LOCUS       DARGBD010000001        53173 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.001, whole genome shotgun sequence.
ACCESSION   DARGBD010000001 DARGBD010000000
VERSION     DARGBD010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 53173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 53173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..53173
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.001"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            2..349
                     /locus_tag="SFZ04_000001"
     CDS             2..349
                     /locus_tag="SFZ04_000001"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEG8064330.1"
                     /translation="MKKKKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLYKSED
                     KFKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVRHC
                     VNSISLEFVKTKD"
     gene            364..990
                     /locus_tag="SFZ04_000002"
     CDS             364..990
                     /locus_tag="SFZ04_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEG8064331.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FIFFHFAATIEKIVGKLILHVFSRIAQVFIVAMGFKMIIVGLKDIFNL"
     gene            1071..2360
                     /gene="cetZ"
                     /locus_tag="SFZ04_000003"
     CDS             1071..2360
                     /gene="cetZ"
                     /locus_tag="SFZ04_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HEG8064332.1"
                     /translation="MFGAKKNNTKIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGYVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLRLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(2382..3029)
                     /locus_tag="SFZ04_000004"
     CDS             complement(2382..3029)
                     /locus_tag="SFZ04_000004"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEG8064333.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(3004..5133)
                     /locus_tag="SFZ04_000005"
     CDS             complement(3004..5133)
                     /locus_tag="SFZ04_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8064334.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLNNHTNDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLAKMTHHHKIFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKALAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSMDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            complement(5130..5420)
                     /locus_tag="SFZ04_000006"
     CDS             complement(5130..5420)
                     /locus_tag="SFZ04_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HEG8064335.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVMDAAKLANFPLQAKVEEE"
     gene            complement(5420..6022)
                     /locus_tag="SFZ04_000007"
     CDS             complement(5420..6022)
                     /locus_tag="SFZ04_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8064336.1"
                     /translation="MKKISALFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNDSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            complement(6033..6485)
                     /gene="smpB"
                     /locus_tag="SFZ04_000008"
     CDS             complement(6033..6485)
                     /gene="smpB"
                     /locus_tag="SFZ04_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEG8064337.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEAKAAMKNYK"
     gene            complement(6482..7249)
                     /locus_tag="SFZ04_000009"
     CDS             complement(6482..7249)
                     /locus_tag="SFZ04_000009"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEG8064338.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSRRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSSCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            complement(7246..7473)
                     /gene="csrA"
                     /locus_tag="SFZ04_000010"
     CDS             complement(7246..7473)
                     /gene="csrA"
                     /locus_tag="SFZ04_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HEG8064339.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            complement(7467..8285)
                     /gene="truB"
                     /locus_tag="SFZ04_000011"
     CDS             complement(7467..8285)
                     /gene="truB"
                     /locus_tag="SFZ04_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEG8064340.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLANLKQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELEFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            complement(8282..10357)
                     /locus_tag="SFZ04_000012"
     CDS             complement(8282..10357)
                     /locus_tag="SFZ04_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEG8064341.1"
                     /translation="MNLFEELNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLSGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVGITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            complement(10354..10791)
                     /locus_tag="SFZ04_000013"
     CDS             complement(10354..10791)
                     /locus_tag="SFZ04_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064342.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQVENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            complement(10785..12506)
                     /locus_tag="SFZ04_000014"
     CDS             complement(10785..12506)
                     /locus_tag="SFZ04_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEG8064343.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLNTN
                     EFLQALKDYENLNQALGKIMTYVYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELTPEKSQEFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEVLSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTNKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            complement(12510..13397)
                     /locus_tag="SFZ04_000015"
     CDS             complement(12510..13397)
                     /locus_tag="SFZ04_000015"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEG8064344.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGSVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            complement(13407..14630)
                     /gene="sstT"
                     /locus_tag="SFZ04_000016"
     CDS             complement(13407..14630)
                     /gene="sstT"
                     /locus_tag="SFZ04_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEG8064345.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFFASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            14770..15966
                     /locus_tag="SFZ04_000017"
     CDS             14770..15966
                     /locus_tag="SFZ04_000017"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEG8064346.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            complement(16203..17528)
                     /locus_tag="SFZ04_000018"
     CDS             complement(16203..17528)
                     /locus_tag="SFZ04_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEG8064347.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKNSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWLNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQNQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKDWKNLSKEIFNDKK"
     gene            17501..17773
                     /gene="yajC"
                     /locus_tag="SFZ04_000019"
     CDS             17501..17773
                     /gene="yajC"
                     /locus_tag="SFZ04_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEG8064348.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            17766..19346
                     /gene="secD"
                     /locus_tag="SFZ04_000020"
     CDS             17766..19346
                     /gene="secD"
                     /locus_tag="SFZ04_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEG8064349.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKNNNTRFWFGYRRR"
     gene            19346..20317
                     /gene="secF"
                     /locus_tag="SFZ04_000021"
     CDS             19346..20317
                     /gene="secF"
                     /locus_tag="SFZ04_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEG8064350.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILEKQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            20327..22756
                     /locus_tag="SFZ04_000022"
     CDS             20327..22756
                     /locus_tag="SFZ04_000022"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEG8064351.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYTQKSGKLIHSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQICGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKVLRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            22753..23265
                     /locus_tag="SFZ04_000023"
     CDS             22753..23265
                     /locus_tag="SFZ04_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064352.1"
                     /translation="MKKILIFCIGLFLGACGYVPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            23249..24646
                     /locus_tag="SFZ04_000024"
     CDS             23249..24646
                     /locus_tag="SFZ04_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064353.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQYNES"
     gene            24612..25796
                     /locus_tag="SFZ04_000025"
     CDS             24612..25796
                     /locus_tag="SFZ04_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEG8064354.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSVFERRMNI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCEKFVLPCFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGIQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            25783..26685
                     /locus_tag="SFZ04_000026"
     CDS             25783..26685
                     /locus_tag="SFZ04_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8064355.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYTIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEVENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            26622..27017
                     /locus_tag="SFZ04_000027"
     CDS             26622..27017
                     /locus_tag="SFZ04_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEG8064356.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            27017..29953
                     /locus_tag="SFZ04_000028"
     CDS             27017..29953
                     /locus_tag="SFZ04_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEG8064357.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQIPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIEGEIEDRFGKL
                     DIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            29955..30716
                     /locus_tag="SFZ04_000029"
     CDS             29955..30716
                     /locus_tag="SFZ04_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8064358.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            30713..31399
                     /locus_tag="SFZ04_000030"
     CDS             30713..31399
                     /locus_tag="SFZ04_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEG8064359.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            31396..32208
                     /gene="thiD"
                     /locus_tag="SFZ04_000031"
     CDS             31396..32208
                     /gene="thiD"
                     /locus_tag="SFZ04_000031"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEG8064360.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGYALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGVKAVLLKGGHSEANANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHLFKFLDEK"
     gene            32198..32830
                     /gene="thiE"
                     /locus_tag="SFZ04_000032"
     CDS             32198..32830
                     /gene="thiE"
                     /locus_tag="SFZ04_000032"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG8064361.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKVTPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            32808..33437
                     /locus_tag="SFZ04_000033"
     CDS             32808..33437
                     /locus_tag="SFZ04_000033"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEG8064362.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKLAKTLV"
     gene            complement(33434..33826)
                     /locus_tag="SFZ04_000034"
     CDS             complement(33434..33826)
                     /locus_tag="SFZ04_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064363.1"
                     /translation="MSLTLNISSYTPKIIQDSYYYLQAQILSHNATQFSKYFLYQAKQ
                     ENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFNPDANLSKDGVIIAHISIALN
                     RDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(33883..34545)
                     /locus_tag="SFZ04_000035"
     CDS             complement(33883..34545)
                     /locus_tag="SFZ04_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064364.1"
                     /translation="MSKAFTLFELITSLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQ
                     LVIKLQNEELIYEIKPKFNEQLNQQGLISKNISSFNLQNNKLKICLKRQTKHCLEKRI
                     LL"
     gene            complement(34542..34844)
                     /locus_tag="SFZ04_000036"
     CDS             complement(34542..34844)
                     /locus_tag="SFZ04_000036"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064365.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTTILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(34841..35575)
                     /locus_tag="SFZ04_000037"
     CDS             complement(34841..35575)
                     /locus_tag="SFZ04_000037"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEG8064366.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSSAK"
     gene            complement(35575..35964)
                     /gene="fliW"
                     /locus_tag="SFZ04_000038"
     CDS             complement(35575..35964)
                     /gene="fliW"
                     /locus_tag="SFZ04_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HEG8064367.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
     gene            36125..36772
                     /locus_tag="SFZ04_000039"
     CDS             36125..36772
                     /locus_tag="SFZ04_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEG8064368.1"
                     /translation="MKKGIFLLVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETILIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            36789..39164
                     /gene="lon"
                     /locus_tag="SFZ04_000040"
     CDS             36789..39164
                     /gene="lon"
                     /locus_tag="SFZ04_000040"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEG8064369.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFILTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(39224..39484)
                     /gene="rpsR"
                     /locus_tag="SFZ04_000041"
     CDS             complement(39224..39484)
                     /gene="rpsR"
                     /locus_tag="SFZ04_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEG8064370.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(39495..40046)
                     /locus_tag="SFZ04_000042"
     CDS             complement(39495..40046)
                     /locus_tag="SFZ04_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEG8064371.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(40055..40432)
                     /locus_tag="SFZ04_000043"
     CDS             complement(40055..40432)
                     /locus_tag="SFZ04_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEG8064372.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            complement(40519..41385)
                     /locus_tag="SFZ04_000044"
     CDS             complement(40519..41385)
                     /locus_tag="SFZ04_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HEG8064373.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFFLKFKKYTILQCNFCFTLENNLLLSCIQGH
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQATLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEI
                     KTNLDKTLSIQD"
     gene            complement(41378..42484)
                     /gene="rseP"
                     /locus_tag="SFZ04_000045"
     CDS             complement(41378..42484)
                     /gene="rseP"
                     /locus_tag="SFZ04_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEG8064374.1"
                     /translation="MRSLLLLIVILTLGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            complement(42481..43017)
                     /gene="pgsA"
                     /locus_tag="SFZ04_000046"
     CDS             complement(42481..43017)
                     /gene="pgsA"
                     /locus_tag="SFZ04_000046"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEG8064375.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALFLTLC
                     SGFEYIYTYIKAQKKGEK"
     gene            complement(43142..43747)
                     /locus_tag="SFZ04_000047"
     CDS             complement(43142..43747)
                     /locus_tag="SFZ04_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8064376.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKCLDAYMPFLKSLNQEEKISYAREQAHIALASILYSANALNIASCPIGGFDKQKLN
                     SYLSLDIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            complement(43747..44365)
                     /locus_tag="SFZ04_000048"
                     /pseudo
     CDS             complement(43747..44365)
                     /locus_tag="SFZ04_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
     gene            complement(44429..44854)
                     /locus_tag="SFZ04_000049"
     CDS             complement(44429..44854)
                     /locus_tag="SFZ04_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8064377.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKFQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVIDETLRGKGIGQAFLKKIQIWAKNQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(44866..45954)
                     /locus_tag="SFZ04_000050"
     CDS             complement(44866..45954)
                     /locus_tag="SFZ04_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEG8064378.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSSLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHGWLGISESVLESNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            46053..48806
                     /gene="ileS"
                     /locus_tag="SFZ04_000051"
     CDS             46053..48806
                     /gene="ileS"
                     /locus_tag="SFZ04_000051"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEG8064379.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKRLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESTPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLASNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            48800..48910
                     /locus_tag="SFZ04_000052"
     CDS             48800..48910
                     /locus_tag="SFZ04_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064380.1"
                     /translation="MLENPIPNSIIITTVAVVLAFSALAVFLIKKTKENK"
     gene            48907..50268
                     /gene="gatA"
                     /locus_tag="SFZ04_000053"
     CDS             48907..50268
                     /gene="gatA"
                     /locus_tag="SFZ04_000053"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEG8064381.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKDWELTSASKILQGYIAPYDASAIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASTNLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            50278..51735
                     /gene="guaB"
                     /locus_tag="SFZ04_000054"
     CDS             50278..51735
                     /gene="guaB"
                     /locus_tag="SFZ04_000054"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEG8064382.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            51732..51905
                     /gene="xseB"
                     /locus_tag="SFZ04_000055"
     CDS             51732..51905
                     /gene="xseB"
                     /locus_tag="SFZ04_000055"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEG8064383.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            51898..52674
                     /locus_tag="SFZ04_000056"
     CDS             51898..52674
                     /locus_tag="SFZ04_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEG8064384.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            52686..>53173
                     /locus_tag="SFZ04_000057"
     CDS             52686..>53173
                     /locus_tag="SFZ04_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEG8064385.1"
                     /translation="MRKILLQIFIFSVLFIVTFTINRVLMQNSFIPTGLISDKNEIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFSNIKINNKLVIYSKNFYFIFSSIYIIVI
                     SCLCIGFSYAKYYYYEIYKTKFDIFMFTLKDDNAKTILSIIYHDYPILKILALMLIFG
                     VFV"
BASE COUNT        18553 a         6941 c         8946 g        18733 t
ORIGIN      
        1 aatgaagaag aaaaaaaaag taattttaaa taaaggaaca gaagctcctt ttagtgggaa
       61 atataatgat ttttatgaaa aaggaatcta tcaatgcaag caatgtggag cttcgcttta
      121 taaatccgaa gataaattta aatcaggttg tggatggcct agctttgatg atgaaataaa
      181 aggggctgtt aaaagaattc ctgataaaga tgggattaga accgagattg tatgtgcaaa
      241 ttgcaatgga catttaggtc atgtttttga aggagaagga ttttctgcta aaaatgtaag
      301 acattgtgta aattctattt ctttggaatt tgtaaaaact aaggattgat agtgttttct
      361 agtatgggtt ctgagcttta tttgatgttt tttgctgcaa ttactttact tgctatatta
      421 aatccttttg gtaatttaac tcaatttttg gctatgagtg atggattgcc tttaatgctt
      481 cgaaaaaaac tttttagaac tattctctat acagctttta ctatagtttt ggtgttttta
      541 ttatcaggac ctttatttat gaactatatt tttagagttt cattggatga tttaagggtt
      601 tctggtggtt tggttcttat tataatggct attaaaaatt tacttttttc aacaaaaatt
      661 gcaactaagg attttagttc ttatcaagat atggatgata aggaaatttt aagacagagt
      721 ttaataccta tggcatttcc tatgcttgtt gggcctggaa ctttagctag cgttattgtt
      781 atagccgaag atggtgggct tgatgttgct cttggcggag taatgatagc ttttattttt
      841 atgtttatat tttttcattt tgcagctact atagaaaaaa tagttggaaa attgatttta
      901 catgtttttt ctcgtatagc acaagtattt attgttgcta tggggtttaa gatgattatt
      961 gtaggtttaa aggatatatt taacttataa attaatataa ttttaagtaa ataatactat
     1021 ataaatatga tataatttta aaataattta ttattaaaaa ggtgagtttt atgtttggtg
     1081 ctaagaaaaa taatactaaa ataattgaac aacttgaaaa aaaatgtaat ggtttaggag
     1141 atattttaag atctattggg aataccatgg cggtaattga atttactacc gatggcgtta
     1201 ttttagaggc aaatcaaaat tttttaacaa ctatgaaata ctccctttca gagatcaagg
     1261 gtaagcatca tagtatgttt tgtttgcctg aagttgttaa ttcttcagca tatagtgatt
     1321 tttggaaaga tttaagagat ggaaaagcta gaagtggtct ttttagacgt atagctaagg
     1381 gagggataga tgtttattta gaagcaaatt atcttccaat tagtgataat aatggttatg
     1441 tttataaaat tattaaattt gccaatgata taactcaaag acattatgaa atgcttgatc
     1501 ttagaaatac tattgctgct gctaatcgtt ctatggctat tattgaattt aaacctgatg
     1561 ggactattat tacggctaat gaaaattttt taagaactat ggattttaat attgatgaga
     1621 ttaaaggaaa gcatcatagt atgttctgtg attctaatta tagacactct aaggactatg
     1681 ttcaattttg ggaagattta agagagggta aatttcaatc aggtaaatat ataagatacg
     1741 gaagaaataa taaaaaagta taccttgaag caagttataa tccggttaaa aatgatgatg
     1801 gaaaaattta caaggttatt aaatttgcta cagatataag cgaacaagtt aaaaaagatc
     1861 aagaaaaact tcgtctcata agtgaacttg cagaaaaaaa tgataatctt actcaagatg
     1921 gagatcgtgt aattgaaaac actgtttcaa atgttcagaa tattgctgat atgatgtctc
     1981 aaagttcaaa tcttgtttct tctttaaatc aacaatcaga tgaaattaaa tctattattc
     2041 aaactattag tgatattgct gatcagacta atctgcttgc tttaaatgct gctattgagg
     2101 cagcacgtgc tggtgaacat ggtagaggtt ttgctgttgt tgctgatgaa gtaagaaatt
     2161 tagctgaaag aacagggcat tcggttaatg aaattaccac tacgattaat tctattcgca
     2221 atgttacatc acaagtggtt gagagtatta aaagcggttt agaggatgtt aatcagagtg
     2281 ttgaacttgc aaaagaagca agagagtgta tggagaaaat tcgtgaaagc tctgctgaag
     2341 ttgctaaagc gatgtcataa gcgtgatttt cacgcttatt tttaagtaat taaatcttta
     2401 aaatttttaa aaccactttc ttgattgcat ttttctttta aaatatttaa aaattctttc
     2461 ctagaaatat tatgagcacc cataaattct aaatgttggt tataaacttg acaatctatg
     2521 ataaaatcat aaggttttaa taaatcacaa agtttaatca tggcaacttt agatgcattt
     2581 tttttaatgc ttaccatgct ttcaccaaag aaaaccttgc ctaaaattaa accataaatt
     2641 ccacctataa gttcattatt ttcataaagt tcaaggctat gcgcatagcc ttgggtaaat
     2701 aacttataat aagtggtaat aaattcatca tctatccagc tttgagagcg tgtatcgcga
     2761 cataatgtaa ttaattttaa aaaatcataa tcaagtttaa tttgatagag attaataaat
     2821 tttttcatat ttttttggat gtgaatttga tttggaatta aaatgcatct aggatctgga
     2881 caccaccaag ttacaggttt acttgtccat gggaatagac caaaagtata agcttttaca
     2941 ataaaatcag cttctaaatt ttgacttaaa aatacaggag catttttagg tgcattgagt
     3001 aatttagaat ataaattcga gctttccatt tttaccaagt ttgattttag ctataccgcc
     3061 ttttttaagc tttccgaata aaatttcatc gctgattttt tctcctattt cctcagaaat
     3121 tatgcgtttt aaaagcctta ctccaaattc tttattatag gcttttttag ctaaataaat
     3181 tttggcttta tcatccattg ataattttat attatttaaa tttttagaaa tttcatcaag
     3241 ttctttttcg ataattttaa caagtatagc atcgtttaaa tcattaaaat gtaaaatttt
     3301 atcaatgcga ttaataaatt ctggagcaaa aaaatctttg atagcacgat tacttttttc
     3361 ttcattttta cttaaaaaac caagctcatt gctttcttta agtcctagat tagatgtcat
     3421 aataatgatt gtatttttaa aatctacttt aagaccgcta ttgtcggtga gttcagcatt
     3481 gtcaaaaatc tgtaaaaagg tattgcttaa atcaggatga gccttttcta tttcgtcaaa
     3541 aagaacaaga ctgaaaggat ttttgcgaat agcattgctt aaaagtccac cctcttcaaa
     3601 acctatatat ccagccggag atcctattag tttacttata gcatgttttt ctgcatattc
     3661 actcatatca aagcgttcta aatttaaacc taaaaattca gctaaagctt tgcaaagttc
     3721 tgtttttcca actccacttg atccagtaaa caaaaacact ccgcgtggtg tattggaatt
     3781 tttaaatccc gcaaaacttt gcttaagtga tgaaacaagg ctatctataa cttcatcttg
     3841 gccaaaaatt tttgctttta aatttgtttt taaattcatt aaagctttat tttgatcgaa
     3901 ttcaaatatt ttgtgatggt gggtcatttt tgctaaaaca ttttctaaat cttttaaatt
     3961 ggcatttttt ttagcttttg gatttaaagc aaaagaagcg ccaagttcat cgatcagatc
     4021 tatagcacaa tcaggtaaaa atttatcatt aaaaaatttt ttaccccaaa ttacagcata
     4081 ttgaagaatt tcatcgttta attttatatg atgaaattct tcatatttgt tttttaatcc
     4141 tttaagaatt tgcaagcttt cttcttggct tggttcatct acatttattt tagcaaaacg
     4201 gcgacttagg ggtttatttt tatcaaaagt atttttatat tccataaaag ttgttgcacc
     4261 tatgcatttt aaagttccat tacttagagc tggttttaaa agattggaaa aatcagtatg
     4321 agattctcct gtgcttccag ctcctactat agtgtgaatt tcatcaataa ataaaatagc
     4381 attgggtatt ttctcaagtt catttaaaat ttctttaatt cttttctcaa aatctccacg
     4441 gtattttgtt cccgcaagta tactagccat atcaagacta aaaatttttg cattttgtaa
     4501 gtttttaggc accttttttt ccgcaatagc taatgctaat ccttctacaa tggccgtttt
     4561 gccaactcct gcttctccta ctaaaatagg attatttttc ttgcgacgtg aaagaatttg
     4621 catcattctt tcaagttcaa attttcttcc tattaaagga tcaatcttgc cattttgagc
     4681 caaaagtgtt aaatcatttg tgtggttgtt taaattttgt atattttcat gattttgaag
     4741 ttcttgaatt ttgttaagat ttatgttgtg tttttttaag agatagctag aataacttct
     4801 tgaatcctgt atgagctttt ctaaaaaatc tataatttta atttcattat ttttattttt
     4861 agatgaaagt aagatttcat ctaaaacaac agatattgta ggttctattt cttgtttaat
     4921 aacttgattg ttttgagaaa tgtaattttt taattcagtt tctagaagtt caagatctcc
     4981 atctgaaaat tcttcaaata tatccttaaa atcagtgctt agttttagta atgcaaacag
     5041 tacatgctca caggtaacaa attcatggtg atttattaag cttagatttt tggcattatc
     5101 aagatatttt tgtaaatttt cttggtattt cattcttctt ccacctttgc ttgtagtgga
     5161 aaattagcaa gtttagccgc atccataact tttttttgtt ttgaaagagc tatttcctgg
     5221 gtgtaaatgc cacaaattcc agaaccattg tgatgaattt ctaacattgt ttgacttgct
     5281 ttctcaaggt tttgatgaaa aatattcatc aaaatttcta taacaaaatc catggttgtt
     5341 acatcatcat ttaagagtat aactttatac atttttggtt cactaagttt tgtttgctct
     5401 agagtttggg tttttggcat tattttcctt tgtagatttt atttaaatct tcttgcatga
     5461 gttctgttgg aattttacca agataaaaat ttgttggagt attattattc cagtaatcgc
     5521 ttattttttg ataaattcca ttttttaaaa caactttaaa aggaagttgc tccatatttt
     5581 gatagtctat atcttttaaa atttgagcaa taatacgatc attagagctg tcattgctta
     5641 gaaaatagta agcaccataa tcatccgcga attttttaac tgtttcatcg ctaacatctt
     5701 caaaatgtgt aagtcctata atgataaatt tgctagaatt atttttccaa agtttgctaa
     5761 gatctaaagc ttcttcttta catggggtgc aaaaagtgcc aaaaaaatca aacattagaa
     5821 cttttccttc ctctccttcc accacaaaac ctttatctgt tcttattaaa gttttgcttc
     5881 caccatttac actatttaag actattttat ctcctttgtg atactcttca aacataaaat
     5941 cattttgaat ttcttcttcc ttggagcaag cattaagaaa aaatgctaaa cttattaaaa
     6001 atagggctga aatttttttc atttattttc ctttatttgt aatttttcat agcagcttta
     6061 gcttctaaat cggcttgctt tttctttaaa gtttcacgct tgtcgtgcaa atttttccct
     6121 ttagctaaag caagggtagc ttttacttta ttttttgtgt taaaataaag atctaatgca
     6181 acgatagtat atccttctat acttacttta cctaataatt tatcaatttg ctttctatgc
     6241 attaaaagct ttctagcgcc tctttcttcg tgtttataga aagagtgtgt agtatgaagt
     6301 aatgaaatat gagaattaag taaaaaaatc tcatttttta taatgcgaac aaaagagtct
     6361 ttaagatttg ctcttcctgc ccttaaggct acaacttcac ttcctttaag gacaattccg
     6421 gcttcaaagc gttctatgat gctataatca aataaagctt ttttatttct cgcaataatt
     6481 ttcatcgatc aaccttaaaa acactactac cgctaccgct tagaaaaaaa tcttcttgta
     6541 agtaagactt cattttagga tataaagttg cacaaggagt aaataaatca tttaattctt
     6601 tgtttttaaa attttgtaac aactcttttg tgctgagttt tttgtatatt tgcgcttgat
     6661 tattgttttt ttgaaagtca aatattcctc tatcaaattc atcataaaca gctttagttt
     6721 ggcaagatat ttgtggaaaa gtccatttta aattaggtat gtcatcttca aattcttcta
     6781 taatttcgcc acagctactt acattagcag agtgaaagcc acttaaaaaa aaggcaatat
     6841 cacttcctag ttgtatgctt aaatttataa gttcttgtag gtttaatttt aaatttaggg
     6901 tttcatttat tagtagtaaa aaactcgcac aatcgctact tccaccacca agcccagcac
     6961 atactgggat attttttgtg agttttagac tttttttgct aaataattct tttaattcgt
     7021 tattatatct tctagaaagt agcaaataag ccttttgaat aatattattt tcgcatttaa
     7081 aattactaat gatttcaaat tcttttttag aatctgattc tttgtcaaca agctcaagct
     7141 catcaaaaac atcttttaaa agtataaatc gtgattctaa aagatgatat tttcttgagt
     7201 caaaaccggt aagttttaaa aaaatatttg ctttagcgta agctttcatt tgattagttt
     7261 tttgcttaag tcatcaagtt taatatcatt ctgaacaaca gaatgcaaat tttcatcctt
     7321 tacttgttga acaagttctt ttctaagtat cataagggat tttggagctt ctatacctat
     7381 tttggcatat cctttccctg tttgaacgac tttgatttct ataccttctc cgataattat
     7441 actttcattt tcttttcttg ataatattaa catttttcaa ccttatttag aagatatttt
     7501 actgtatttt ctttaatatt aattatgcta aaatattttt ctgtttcaat ataataatct
     7561 ccttcatcat gaaattctaa ttcttcgaca aaaattttag caccattttc gagtttattt
     7621 aaatccttga taaaatttgg ctttaggtta atgtatttta acacatttaa gcttttctca
     7681 ttattataaa caaatttgcc ttctttaatg cgctctaaag agcttaaagt cgcattaata
     7741 cctagttttc tagcaaaaag ttcacaataa gatcttatgt aagcaccttc actgactgtg
     7801 atttcaatat ttaaaaaagg atgattatag cttaagatct tacaatcaaa tacttccatt
     7861 tgacaaggtt ttaaatttgc ttctatacct ttttttgcaa gttcataggc gcgagttcca
     7921 ttgattcttt tggcgctaaa ttgaggtggt gtataggaga taattccttg catttgatca
     7981 atgatttgtt ttaaatttgc aagatcaaat tcttttatat tttgaatttc ttttatattt
     8041 tgatcatcaa gacttaagga gtaaactcca agccataaag tagctttata ggtttttggg
     8101 gtttttttta aaaaacggaa aagttttgtg tattgtccaa atgcaacgat taaaacccct
     8161 ttggcgaaag gatcaagagt gccagaatat cctgcttttt tatttttata ttttttcttt
     8221 aaagtgctta aaaaggcgtt agagctcaaa ccccttggtt taaaggctgc aaagatcttg
     8281 ttcatactgc tttttccaca aagcttgcca tgattacacg cattatgcca ccaaaattaa
     8341 tattaagctt ttcctctttt ccgcttttat taacttcaac aaccctgcca atgccaaaaa
     8401 ttttatgttt aactagatct cctttgcaaa aactagtttt ttgtatattt tgattttttg
     8461 atttttcatt gattaattta ctttcttcta agaagcgact aggattgata tttgctcttg
     8521 aaccatgata aaaacgagaa tttgcaacac ttattgtgag aaatttcttg gcgcgagtga
     8581 tgccaacata agcaagacgg cgttcttctt cgagattttc ttcgctattt aaaggaaaaa
     8641 atccttcgtc aaagcctatt ataaaaacat aatcaaattc caaacctttg ctagcatgaa
     8701 tgctcatcaa gcaaacacat tcttcatcta aattatcttg atcgcttaat aaagaaattt
     8761 cactaagtag atcttctaaa gaagctttgg gatcttcttt gagtttttct cttagattag
     8821 cataaaactc atcaagattt ctgattcttt catctccatc atcttgctct gaaaaataat
     8881 ctttaatttt aaataattct tctatattgt caaaaacctt ttttgcatta tcgtagcttt
     8941 ttagagtgtg aatattttgt ataaaaatat ttgcttcatt ttgtgctttt tttgttgtta
     9001 aaattcctac accaccatcg ctttcgcata gggcatcaaa aagtgaaatt tgacgttttt
     9061 ttgcatattc ttctaaattt tttagggctt tttctcctat ggatcttttg gggcgattaa
     9121 taatacgttt aaacgacaaa tcatcgcttg gatttaagat aagtctaaga tacgagatta
     9181 aatcttttat ttctaatctc tcataaaaac gcataccact aagtagttta taagaaattt
     9241 gtttcttcat aaatgcttct tctattgctc ttgatagtgc attaactcga aataaaatgg
     9301 cgatctcttt agcttctact ccagaattta gcaatttttt cacttcttga gcgatatata
     9361 aaccttcatc tttttcgttt tcgtttttta atattttaat attttcccct gtatctttag
     9421 tgcagattaa agtttttcca agtcgttgct cattgtgaga tatgagatta tttgctgctt
     9481 gtaaaatagt ccctactgaa cgatagtttt gttcaagttt tacaagttta acatttttaa
     9541 aatcattttg aaaatttaaa atattttcaa tttttgctcc acgccaacta taaatacttt
     9601 gatcatcatc accaacaact gtgatatttt catgcataca acatagattt tttagaattt
     9661 tatattgcaa ggtattagta tcttgatact catcaactgt aatgtaatta taaagtaagc
     9721 tttgttcttt ggcaaaattt atatcatttt ctaaaatgag attgcttagc aataaaagat
     9781 catcaaaatc tacaaaattt tgttttaata agtattcttc ataagcacgg taatagttgg
     9841 caaatttgta ttcattttga tatttttcaa aattatgttc ttttagtaaa tttaaatctt
     9901 caaagacatt gcttactctt ttgccttcat ttttgcaata agatatgtat tggataatat
     9961 catagacatt atctttgttt ttatcatgga ttaagtcttt aattattttt tttgtatcat
    10021 ctgtatcgat aacaataaaa ctatttttac gctccaatct ttcaaaatgg agttttaaaa
    10081 ataaaagtcc aaatttatga aaggtgcaaa gcaaaggatt gtgattgcct tgtagaaaat
    10141 ttaatgctct atgacgcata acactagctg ctttatttgt aaaagtaaga gtaagagtgt
    10201 tatgtgaggg gatgcctact tcaccgataa gataagcaag acgagtggtg atagttttgg
    10261 tttttccact acctgcgcct gctaggataa gcatggctcc atcaatgtgg cttaccgctt
    10321 gtttttgact atcatttaac tcttcaaata gattcatttt ttgaaaatat ctttattttt
    10381 tggattattt aaaaatatat ttttagattt ttgtaaattt ttgctatctt cacgtttata
    10441 aagactaaaa ttaacgaata aaatgctatt ttctacttga atttgcgtga tagctcctaa
    10501 atcaaccttt acaaaactat caaaatcatc atttccaaaa cctgcgtgaa attgaatgaa
    10561 atctttattt agttgtatgg attcaaaggt gtatcctcca agagcaaaaa gagcataagg
    10621 attttgttta atatcaagct ctttgggaag ttcagggtta aaatctatga aatttgtatt
    10681 tgcaactatg gaaaattcta tattttcttc tataaggtgt gaaataactt cataacaatg
    10741 cttttgcatg gtatggataa aattttcatt ttttaagatt gtttctagca tgattgtaac
    10801 tccatgaatt cattgatgag tttttgaatt tcttttatgc ctatttccca aaaattttca
    10861 tcttctatat caaatccaaa cattcctact agttcttttg gactcacgct tccacctaaa
    10921 gaaagcattt tgatataaag ttctttaaaa ttttcacatt ttttactttt gtaaagtcca
    10981 taaagagcta aaactaaaag ttgtgcataa gcataagcat agcagtaaaa aggagaatgg
    11041 ataaaatgag gaatataact ccaccaagaa gcataatttt ttgtaagttt tacgctgtct
    11101 tgaaacatct tttgagattc ttccatccaa attttattga tttcttcagt actaagttca
    11161 ttttcttgag catgtaagcg tctttcaaaa caagtaaaat taatttgtct ataaaaagtt
    11221 gcaaaaatat cttcgatttt atttgcatat aaagataaga gttcttcttt ttttaactta
    11281 tctttaataa aatcaaatac gagcatttca gcaaaaactg aagctgtttc tgcggtggtt
    11341 aaaggtgtat tttgatttaa atagcttaca ttataagaaa gtttttgatg gatagtgtgt
    11401 cctaattcat gtgcaagtgt aaaaagatcg cgtcttttat tggtgtagtt taataaaaca
    11461 aaaggatgtg catcagaagt tgcagaatgc gaaaaagcac ccccttgttt attttcttgc
    11521 ggataaacat caatccaacc ttgatcaaaa gcattttttg ctatatcata aaattgagga
    11581 gaaaaagctt gaaatgcctc taaaacaata tttttacttg ttttaaaatc aaaacttgct
    11641 tcttttccta tgggtgcata tctgtcatag tctttaagct catcatagcc taaaatttgt
    11701 ttttttcttt tgtaaaattg cgatactaag ttaaaatgtt tttgcgcact tgctatcaaa
    11761 gaatcaacgc ttttttgtga aatttgattg ctgatatgtc ttgaaatttc agcattttca
    11821 taacctctta ataagcttat gttttttctt tctgttttta tcatattaat aataaaactt
    11881 aaaagtctgc tatttttttg caaaacttta ctgaattttt tagcagcttt tttgcgtatt
    11941 tttctatctt catcatacat tttgcttaga acttcttctt cgctaagttt tttaccttca
    12001 aaagggattt ttaaagcgct catactttca tcaaaaagtc tactaaaagc atttgcacct
    12061 gtattggaaa gataaagcat aatgcgttct tcgtttttgc taagattata gcgtttgttt
    12121 tgcaataaat tagaaagata aaaatcataa tctttgcaaa aagttgtaaa ttcttgactt
    12181 ttttcaggag ttaactcaca aaattcaagc tcgaaaaaga gtaaattttc ttctattttt
    12241 ttgcactctt cttcgtattg tgcgtaaaaa gaaccatttt gagtgttttt agcaaaaagc
    12301 aaataaacat aagtcatgat tttaccaaga gcttgattta aattttcata atcttttaaa
    12361 gcttgcaaaa actcattagt atttaatgta taaagtttat tttcatagtt ttttttgaaa
    12421 tttaaacttt gttggatttg atcttgtgta aaattttgca atgcttcttt atcgtgaaat
    12481 aaagcactta aatcccattc taacattttt tatccttcat tttctagtat gagtttttta
    12541 agaacagcca ttctaatagc cactccattt ttaacttgtt ttaaaactaa agtcctttca
    12601 tcgctcatca tttcatcgct tatgtcaata ttgcgattaa cagggcctgg atgtagtaaa
    12661 ataagctttt tatcctttac taagcttttt tgaatgcaaa aatcatttgc atagtcttta
    12721 agtgaagcat aaacggtttt attatgtctt tctgtttgtg ttctaagact catgatgata
    12781 tctgaatttg ctataatatt ttcatcaagt ttataatgtt ttttaagatg ggtattaggc
    12841 ataaaatgcg gtggagctac tagggtaata tcaagattaa atctacttaa aagttctata
    12901 ttggacgctg caacgcggga atttttaata tcacctacga tgcaaatttt tttaccttca
    12961 acactacctt gaaaatgatt ataaatcgta aacaaatcga gtaaagcttg ggtaggatgg
    13021 gcgtgttttc catctcctcc attaacaaca ggacaatgca tatgctttgc taatatcaaa
    13081 ggaactcctg agtttgcgtg tcttacaaca atagcattag gactcatggc atctaaatta
    13141 gcagcagtat cataaagagt ttctcctttg ctagagcttg atcttgaaac atcaaggcgt
    13201 aaaaccctag cacctaatct tcttgcagcg ctttcaaaag atgaaagggt gcgtgtagag
    13261 ttttcaaaaa aaattgtcgt gatgcttttt ccttcaagaa aagtcctagg tttttcatct
    13321 aagaaatcac ttgcttcttt aaaaagctcc ataatttcga ctttattaaa atcctttgta
    13381 gtgatgagat gacgcatatt tttaccttat ttgatattgt aatttaattc atttttagaa
    13441 caaattgctg taaaaagaac atctgtagaa ctatttaaag cagtttcaac actatcttga
    13501 ataaccccta taataaaacc tatggcaact accttcatag caatatcata gtctatatta
    13561 aataaagaac aagccaaagg tataagcagt aaagatccgc ccgcaactcc gctagcccca
    13621 caagctgcaa aggtggcaat aatgcttaat aaaaaggctt gtaaaagact gatttctata
    13681 ccaacggtat tggctgcagt aagacttaaa atagctatag taactgctgc tcctgccatg
    13741 ttgatagtag ctcctaaagg tatagaaatg ccataaaatt ctttatctat gccaagttta
    13801 gcgcaaagtg ccatatttac aggaatattt gccgctgaac ttcttgtaaa aaaggcaaaa
    13861 aatgcactgt gccttaagca gataaaaatt aaaggaaaag gattttttct tgtataaaaa
    13921 aagactatta aggcattgat aacaaaagta acaaaaagca tagtagctac aagtaaaatt
    13981 aaaagtttta cataacttag caaaccttgt gctcctgttt gtgctacaga attagccaca
    14041 agtccaaaaa ttccaaaagg ggcaagtttt actacaaatt taacgatttt taaaacccct
    14101 tcattgatat ctataaaaac ttgttttgct tcgttagaac agtgttttaa tgctatacct
    14161 ccagctattg cccaagttaa aattcctaaa taatttccgc ttgaaagagc atttatggga
    14221 ttatcgacaa ttttaaataa aagatctttg aaaatatcac tcatgtgggt tggagatgag
    14281 tttgtagcag tttgaactcc atctaaaaca agctttacag ggaagaaaaa attagcaaga
    14341 actgcacaag ctgaagcaaa aaaggtgcct actatatata aaatgataat atttttgatc
    14401 ttagcaccac tttgagaaaa atctttagtg caaattgagg ttaaaattaa aataaaaaca
    14461 agcataggag cgatagcttt taaggcactt gtaaaaagta ttccaagtaa atttgcaatt
    14521 tcagatattt ctttagagct aatgcctata agtattccta gtgctatacc tatgcaaatt
    14581 tgaactatga ggttgccttt agcgtagctt tgaatgattt tagaaaacat aaaaaccttt
    14641 taaatatttt ttatatcaaa agttgatttt aactaacttt tgcttaattt tagagaattt
    14701 ttaatttatc aagctttgat aagtttattt ggatacaatt gtggtttatt ttaaatgaaa
    14761 ggacttttta tgtatctatt cacttcagaa gtcgtaagtg caggtcatcc agacaagtgc
    14821 gctgatataa tcgctgatac gatagtggat atactcttga aaaatgacaa aaattcaagg
    14881 gtggcgagtg aggtttttgt cgcaggaaat aaggttgtga taggaggcga agttaagtca
    14941 aatcacaaac ttagtaaagc tgattacgat aatttagtta aagatgtttt aaaaaacatt
    15001 ggttatgacg gagcaggcca ttttagcaaa gagcagtgtt tacatcctga tgaggttgat
    15061 gttatggtgt ttttaaatga acaaagccct gatatcaacc aaggtgtcga tcaagaagat
    15121 ggcgaaacag gagcaggtga tcaaggcatt atgtttggtt ttgcaagttg tgaagctgag
    15181 gaatatatgc cagcagctat tagttatgca agaatgctat gtgatagagt ttatgcttat
    15241 gcaaaagcaa atccacatga acttggagtg gatattaaaa ctcaagtgac tatagattat
    15301 ggcactaagg cgaattttga aaattgcaaa ccgcaaagta ttcatactat agtagtttct
    15361 gcaccttgtg ttgaaagtat gaaaatagaa gatttaagat ctttagtgat gaaacttatc
    15421 ttagatagta atttaccaaa agaacttttt gatcctaata agactagaat tttaatcaat
    15481 ccaactggta aatatgttaa tcattcttct ttacatgata gtggtttaac aggaagaaaa
    15541 cttatagtag atagttttgg aggttattct ccaataggtg gtggtgcgca atcgagcaaa
    15601 gattatacta aagttgatag aagtggactt tatgcaggta gatggttagc taaaaacata
    15661 gttgcagcag ggcttgctaa aaaatgtata gttcaactta gttatgctat aggtgttgca
    15721 aaacctactt cggtaagcgt ggattgtatg ggcacaaata ccagtgtaaa tgacgatgtt
    15781 ttaagtgatt ttgtaatgca aaatttctct ttaacgccaa attggatccg tgataaattt
    15841 catctggata aaccaagtaa agaaactttt ctttatgcgg atgtagcagc tcgtgggcaa
    15901 gtaggacaaa aggactatcc ttgggaaaaa cttgatgctc tagaacagtt taaaaagcta
    15961 ctttaaaaaa ttaacaatat tatacaagct taaacaaggc ttgtataatt ataaagaatt
    16021 aataaagtta tattaatttt tgacttagag ggatattttt caatatccct cataaatata
    16081 aaagttagga aggaagctaa attaatttag ctttggggta aaaacccctc taagtcaaaa
    16141 tattgtttga cagaattata atataaaata acttaaatta ctttaaaatt aaaattttaa
    16201 tattattttt tatcattaaa tatttctttg gataaatttt tccaatcttt gcttaaaagc
    16261 tttttaggga gtataactat attctctttg ccatttgtag catgataaac actaacccca
    16321 tatttacttg cataaaattt cattaagagt tgctggagtt tgtattcgct actattatta
    16381 aaccaagcat tgttgcttag ggctataata atttgtgaat tttgatagtt ttgttctttg
    16441 gtagcttcat aacaaattgc atttgtgata atttgattat ctaatttata tttgctttgt
    16501 ataggacctt tggaaaattc ttcaatattt ttgagaaaat atttttttgt taagtcttta
    16561 aaaaatggaa tttcttcacc aaagggaact aaaaaatgct tatttaaaat atagacattg
    16621 ccttttttaa agatataagt gctattgtaa gtatgctctt tttcaacatg aaatgctcct
    16681 gtaataatgg tgattttata agataattct ttaagcatga gctcatattt ggtatttttt
    16741 aaatcaaaag caaaagcggt ttcaggcaag attacaagtt cttttttttc atttatagct
    16801 tgaagtatat cttgaattaa gatatcagaa tttgatttta aattttcttg taaaaatttt
    16861 tgattttgag agatattagt attgatgagt ttgtagttta aattaagagt ttgagcttgt
    16921 ttttcattat attgaaatcc actaaagaat aaaataagaa caatcgctat tttataatat
    16981 cttgatatat aaccctcata gatgaaatat gctattaaaa atatgcaaat aataccacga
    17041 taacttgggt caaaaaaacc ataaactgta aaaattcccc aattaagcca atcaaatcct
    17101 aaaggatgga taaaacttat gcaaaaaatt ccacaaagcc ttaaaaaatc aaattttaat
    17161 aaataacata atctaaaaag tagtccataa ataaaaccaa tgataattgg tataattggt
    17221 actaaatagt ttagattaaa ataaattgaa gataaaccaa tccaccaaaa ccaaagaatc
    17281 cctacaaaaa aacctatcca aaaatattgt ttagaatttt tactttttag aagtaaaact
    17341 aacccccaaa tagctaaaaa tgggctaata gtttgtgtaa aaatattttc aaaaaatgat
    17401 agataaatag aatttgaaag taaaattgca ataaaaaaga cttttattat tttaaaaatg
    17461 atagaattag tgtttaattt ttttggaata aaggaaaaat atggcagaaa attcaatttt
    17521 aacttcattg ttacctcttg tagtgttatt tgcaattttt tatttcttgg tgatcagacc
    17581 gcaacaaaaa caagcaaaag cacataaaca aatgcttgag tctttgcaaa aaggagataa
    17641 aatcatcact aatggcggac ttatttgtga agtcgtaaaa ccagaggagg attttatcaa
    17701 agttaagctt aatgaagaca atgttactgc aaaaatttca agagaattta tagcaaagaa
    17761 aattgatgcg taattctaaa atcaattatc gcttgattat ttttatagcg gtatttattt
    17821 ttggagtggc tttttcactc ccttcttttt tacagtcaga acgtggtgcg aagattaatt
    17881 tagggcttga tttgcaaggt gggctttata tgctcttagg tgtagataat gaagaagctg
    17941 taaaatctaa aataaaatca attgcatctt cattgagtta ttcttttaat aaagaaaata
    18001 ttttaaatga tggcttaaat acccatgatg atattttaga atttactttg cttgataatg
    18061 cagatattgc aaaagttgaa aatttgctta aagaaataaa aggaattaat atacaaagtg
    18121 aaaatatgca ctataaaatt tcttttacct cagaagaagt aaaaaatata gaaaattttg
    18181 cacttttgca agcagttgaa accataagaa ataggcttga tcaatttggt ttagcagagc
    18241 caacagttgc taaacaaggt gatgataaga ttttggttga acttgcaggg attaaaacca
    18301 aagaagatga actaagagca aaagaacgca tcacaaaagc agcacatttg caacttatgg
    18361 aagttgatga ttctaaaatg ggtcaagctt ctacaatgag cgatgctgag gctgcgagtt
    18421 atggactgat tttagtgcct gattctagaa atccaaattt aaaatatacc ttaaaaagta
    18481 tacctatttt agatggatct atgcttactg atgctagagt agggattagt gataagagta
    18541 attatcctgt gattaatttt actttaaatg ccgagggttc taaaaaattt gctgattata
    18601 caggagcaaa tgttggaaag cgtcttgcta ttgtacttga taataaagta tattctgctc
    18661 catctatcaa tgaacgcata ggcggaggta gtgggcaaat cagtggagct tttactcaag
    18721 aagaagcacg cgatgtggcg gtagctttaa gaagtggagc tttgcttgcg cctgtaaaat
    18781 tacttgaaca aagaagcata ggaccatctt taggtgctga tagtattaaa atgagtatga
    18841 tagccttaat cggtgcatcg gtttttattg tagtatttat gatgatgtat tacggtgtgg
    18901 caggaatttt tgcaaatatt gcaatgctag ttaatgtttt ggtagtagtt gccgttatgg
    18961 ctatgtttgg agcaacttta actttaccag ggatggcagg acttgtttta actgtgggta
    19021 tggcagtaga tgcaaatgtg attatcaatg agcgtatacg agaactcttg cgagatggag
    19081 taaatataag agttagtata gaacaaggtt ataaaaatgc tatgagtgcg attatagatt
    19141 caaatatcac ttctttagtt acttcggtag cactttatgc ctatggaaca ggagcagtta
    19201 aaggttttgc tgtgactttg ggaattggta tcgttgtttc tatgattaca gctattttag
    19261 gaactcacgg aatgtttgat tattttatgc aacgcataga aaaaaataat aatacaagat
    19321 tttggtttgg ctataggaga agataatgca gttttttagc gaaaagaaaa tttatgattt
    19381 tatgagaatg cgttttgctg ctatttctct ttcttttatt ttgttttttg gttctattta
    19441 tttactttgg gataggggtt tgcaatatgg cattgatttt agcggaggaa ctttagttca
    19501 gcttaaatat gaaaatgcag ctcctataac acaaattcga gaaattttag aaaaacaagg
    19561 aacttttcaa aatttatctg taactgaatt tggaagtaat gaagaagtaa ccatacgctt
    19621 tttaggaagt aatgataatg taagcaatga tataggcgag catataagca ctcttttaaa
    19681 ggatacggga aaatttgaag tgcgtcgtgc tgatgtggta ggtccaaaag taggtgatga
    19741 acttagaaat aaaggactta tggctatagc tgtatctttg atagcaattt taatttatat
    19801 agcgttgcgt tttgagtggc gttttgctct tgcggctata atcagtgaaa ttcatgatgt
    19861 tgtgattact ttaggggcaa tttctttatt taaaattgat gtcaatttag atactttggc
    19921 tgctgtttta actgtgcttg gatactcttt gaatgataca attattattt ttgatagaat
    19981 cagagaaggt attaaaacaa gtaaaaaaac cgaacttgca cctattatta atgaaagtgt
    20041 ttcagcaact ttatcaagaa cggttttaac ttcagggttg actttagcaa ccgttgtgat
    20101 actttatttc tttggtgggg aaatgataca aggattttct ttggctttaa ttgtaggtat
    20161 tatagcggga actttaagct ctatctttgt tgcaagtccg acattattat ggtttaaatt
    20221 tagtgtgctt gagtttagga ataaagaaat tgaaaaagca aaaagaaaac aagataaaga
    20281 acgcaatcgt gcaatgtatg aaaaaggaac agtgtaagga gaatttatgg cttatgaagc
    20341 aagtttaata gaaaaaaaat ggcaaaaaat ttgggatgaa aatgaatatt ttgagccaaa
    20401 agatgattta aatttgccta aaaaatatat tttatcgatg ttcccttatc ctagcggacg
    20461 aattcacatg gggcatgtaa gaaattatac tataggtgat gctttggcaa gatattatcg
    20521 caagataggt tttaatgttt tacatcctat aggttttgat agttttggta tgcctgctga
    20581 aaatgcagct attaaacata aaattcatcc taagtcatgg acttatgaaa atatagctta
    20641 tatgaaaaaa gaactttttt ctttaggttt ttctttttct aaaaaaagaa tgcttgctac
    20701 ttcagatcca ctttatacaa aatttgagca agaatttttt attaagatgt ttgaaaaagg
    20761 tttgatttac actaaagaag caaatgtaaa ttggtgtgaa caagatcaaa cggttttggc
    20821 taatgagcaa gttgaagacg gaaaatgttg gcgttgtggt catgaagtag tgcagaaaaa
    20881 aatgccaggt tattatgtaa aaatcactgc ttatgctgag gaacttttaa aagatttaga
    20941 agaattaaaa gataaatggc ctaatcaagt tttaactatg caagaaaatt ggattggtaa
    21001 aagcgaaggt ttggaatttt ctttaaattt agacgaagaa agcaagcaaa aaaccaaaga
    21061 aagttcttta gaagttttta ctacaagagc agatacaatt tatggagttt cgtatatcgc
    21121 tttagctcca gaacataaga ttgttcaaaa tttgctttca caaaatttat taaatcaaga
    21181 tgtattaaat aaaatcaaag ttattcaaaa tcaaagccca agagaaagac aaagttctga
    21241 aaaagaaggt tattttttag gaatttatgc cattcatcct ttaagcggag aaaaaattcc
    21301 tttatgggtg gctaattttg tcttggctga ttatggtagc ggagcggtta tggctgttcc
    21361 agctcatgat gaaagagatt ttgaatttgc aacaaaatat aatcttgcta tcaaacaagt
    21421 tattcaaact caagaaaatt taccttatac gcaaaaatca ggaaagttaa tccatagtca
    21481 agaatttgat aatcttgatt gtaatgaggc aagattaaaa attatttctc agtttgaagc
    21541 taaaaatata ggaaaaaggg ttgtaaattt taaaattcgt gattggggtg tttcacgcca
    21601 aagatattgg ggtgcgccta ttcctatgat taaatgtcaa atttgtggta tagtgcctca
    21661 aaaactagaa aatttaccta ttaccctacc tgaagatgtg caaattacag gtgagggtaa
    21721 tccacttgat aaacatccaa cttggaaaaa ttgtatttgt cccaaatgtg gcaaagaggc
    21781 tcaaaaagaa agtgatactt tagatacttt ttttgaaagt tcttggtatt ttgcacgttt
    21841 tgcaagtgat gagaaaactt ggcaggaaaa agctttagat gaaaaaagtg taaagtattg
    21901 gatgagtgtg gatcaatata taggtggtat tgaacatgca atcttgcatt tgctttatgc
    21961 gagatttttc caaaaagttt taagagactt gggttattta acacaaaatg aaccttttga
    22021 tagactttta actcagggta tggtgttaaa agatggagct aaaatgtcaa aatcaaaagg
    22081 caatgttgta gatcctgatg agattataga aaaatacggt gctgataccg caagactttt
    22141 tatacttttt gctgcgcctc cggctaaaga gcttgaatgg aatgatgatg cggttgaagg
    22201 ggcttataga tttatttgta aactctatga tagggcgcaa aatgttaaaa aaggtgagct
    22261 tgtagaatta aaacaagaaa atttaaataa agaagaaaaa tatgcaagat taaaggtata
    22321 tgaagctttg aaaaaatctt ttgaagttta tcatcaaagt tttgctttta atactttaat
    22381 tgcagcttgc atggaagctt taaatgcttt agcgctttgt aaaaatgaag ctttggagca
    22441 agaggctttt tatattattt taaatatttt agagcctatt attcctcatg tttgttttga
    22501 gcttagcgag gagcttttta aatgtaaaaa tttcaaaaaa ttagaactta aggaagaggt
    22561 ttttgtaaaa gatactttaa atttagctgt aagtattaat ggtaaaaaaa gggctgaatt
    22621 tgaaatttca agtagtgcga gtaaagaaga aattttagct tttgcaaaag aaaatactgc
    22681 taaatggctt gaaggtaaga gtatagttaa agaaatttat gtggaaggaa agctagttaa
    22741 tctagtgatt aaatgaaaaa gattttaatt ttttgtatag gtttattttt aggtgcttgt
    22801 ggatatgttc ctacatcaaa aatcgctaat aatattttcg atgagaaggt ttatgttaat
    22861 gttgaattaa gtcaacaaga tccaaaaaat agtatctatg ttgccgatac tttaaaagaa
    22921 atggtaattt caaaattagg gcgtaaactt gctttaaaac atgaagctga tgatgtaatc
    22981 aatgttaaaa tgaataattt agaatttatt cctttagctt atgataaaaa tggctatgtt
    23041 attagttata aagctaaatt aaatttagat tttaatgttg tctttaaaga tggttcaagt
    23101 caggctttta gtacaagtgg aagttataat tttgaaattt ctccaaatag tattattagt
    23161 gattctgcaa ggtatgaggc tattcgagca gcttcaagcg aggcatttga tgagtttatt
    23221 tccgtaattg ctattaaagg gcaaaaacgt gattccaaat actaatgaaa tagcaaagca
    23281 aactttaatt gcattaaaag aaagaaaact aaaaccaact cctgaaaatt atacggaaat
    23341 ttttgaagaa ttatctttaa aatatggtat tacaagttca aataaggcta aacttgataa
    23401 atacaaaacc ttgcttttac cgatttatca acaagaatta aattctaaaa ctataagaag
    23461 tttagaagaa ctaattagtt ttttaatttc tgttttaaat agacaaagtg gaaaacaatt
    23521 tagtgaattt tttgattttt tatatactat atctaaaact ttgcaaataa gtaaggataa
    23581 aaagataaga gatttggcta aggtgacttc gattagaatt tctaaaacta tggatagtga
    23641 aagtatttac ttgcttacta aaaaatggaa agagcttgaa agaaattacg atgaaaatga
    23701 cttagaagaa caagctcgca aatatggtat tagtaaatat gatgattatg atagcgtgat
    23761 taaaaaactc ttagttaaac ttgaagagcg tagttatgag cactttagtg aattattatg
    23821 cttgggttta aatccttcat tggtagaaga tttaaaaatt caaggtttta tacaaaattt
    23881 aacacaaaag ccttttgtaa taggcgaaga aaattttaaa aatgaactaa tggaatttat
    23941 aaatcatcgt ataatggttg ataatatgta tgtccaaaaa aatttaaatt tttttaatga
    24001 taatctaaaa aaaatctatg aattgcttgt cttacttaat aaatcgaatg aaaaaaatat
    24061 ggattttatc aatactttaa aaccagatga aaatggggaa gtaaaactta gttttgagga
    24121 tttaaaacta aaatttaaac aacttggaga aaaaattaca tctttaaata atcaaattga
    24181 attcacgcaa agcttagaag agagagaggc ttggagtgtt cttaaagagc ttgataaaat
    24241 ggatgaaaat tttaataagt ataaagttaa ttattcttta gctttatttt ctatagtaaa
    24301 ttaccgtttc attatggaaa aatacggtat gggaagtttg aatgaaattt ttgttcgatt
    24361 taaaaaaatt ttaaaagatt cttgtagcga atttgatgaa ctgtggatga tagatgaaaa
    24421 gagttatttg attgtttcgc caggaaaaag caaagatgaa attacacagc ttgtaaatac
    24481 aaatcttaaa actatagaaa attttagatt tatttataag caagatatta taactcctaa
    24541 aattcacgtg gcttatcttg ataagcaaag taagccaagt attaatattt tagatgagtt
    24601 aataaagcaa attgcagcgg ttaatgaaca atataatgaa agttgagaat tttttagctc
    24661 aaaaaagtat aaattacgat aaaattgatc gttttttgat gtttagaatg tatgaaaaat
    24721 ataagaaata ttttaaaaat attcccataa ttcaacttat aggcacaaat ggtaaaggta
    24781 gcacgggtag atatttaacc caacttttag aaaatttaaa ttataaaata gggcattata
    24841 ctagtccgca cattttcagt tttaatgaaa gattttatct tgatggtaag attgcaaacg
    24901 atgaagaatt agaacaagct catataagac ttgaagaaat ttttaaacaa gacttgcaaa
    24961 aattaagtta tttcgaatat gctacttttt tagctatgat tttatttcaa aaatgtgatt
    25021 ttattgtttt agaagcagga gtgggtggag aatatgatgc tacttctgtt tttgaaagaa
    25081 gaatgaatat ttttacaaga attggatttg accatattca aattttgggc aattctttag
    25141 aagatattgc aagaaccaag cttaaagtta tggcgcctat agcacttata agtgatgagc
    25201 aagagcaaaa tgttttaaat ttagcaaaaa aaattgcttt tttaaaaaaa gctaatttgc
    25261 aagtttcttc cttaaatcct tttttgaaag aaaaatttga gatttattgt gaaaagtttg
    25321 ttttaccttg ttttttaaag cataatttaa agcttgcatt aaaggcttgt gaaattttaa
    25381 cttcacaaga aaaaacctta gaagctttaa aaaagttaca agagttaaat ttacaaggaa
    25441 gatgccaaga aatttctcca aatttttttg ttgatgtggg tcataatccc atggctgcta
    25501 aggctatgct tgataaattt caaggagaaa aaataaatct tatttataat gcttatttgg
    25561 ataaggatat ttttcaaatt ttaaatacat taaagcctat tattgataca atacaaatat
    25621 ataaatataa aagtgcagaa cgaaagctgg ccgatgatga aatttatagt attgcatcaa
    25681 agctaggtat acaatgcaaa gaatttgtaa aattagaaga gaataaaaaa aatctagttt
    25741 ttggttcttt tatgctggta gaaaattttt taaaggagtg gtgtggtaaa aaataaattc
    25801 actattacca ttacagatat taacggttca agacattttt atttaaatca aataattaaa
    25861 aaaatagttt tttatactat tgcttttatt gttttatttt tagtttttag tggtttttat
    25921 atcaaatatc tcgatagcaa acttagcgat atcagtgaaa agcgtgagga gcttttgaaa
    25981 aaaagcaaag aattggaatt atctaattcg caaatgcaaa aaagcataga agaaaaaact
    26041 cagcagtatg cagctataga agataaaata gcttcttttg aagaggcttt gggcttagaa
    26101 gtagaaaata atcttacaat tagtgcaaga cttgataatc ttcagcttac caatgagcag
    26161 caacttggaa ttttgggaca aattcctaat ggatggccta ttgaaaataa aggcattaca
    26221 ggaaattttg gctggagaga gcatccgctt ttaaaaagaa gggaatttca tcctggtatt
    26281 gatttaagag cagaaattgg tacccctatt tatgcaccag caagtggagt agtggaattt
    26341 tcaggttata gtgataatgg ctatggctat aatgtaattt tattgcataa ttttggtttt
    26401 aaaacagtat ttgctcatat gatgcgcaaa gaagtggtca aagcaggtca atttgttaat
    26461 aaagggcagt tgataggtta tagtggcaat acaggtcttt ctacggggcc gcatttgcac
    26521 tatgaggtaa ggtttattaa taaaacttta gaacctttgt attttttaaa tttgcaaaga
    26581 aaaaatatga atgatttttt taatcaagaa aggagagttc catggcaatc tttaataaag
    26641 gcggtatcag cccaacatcc agctctagct cagaaacaac agtaatttct tcaggtgcga
    26701 gaattgaggg taaattttat tttgcttcta tgctccatgt tgatggagag ttaagtggca
    26761 ttattcattc tgaaagcatt gtggttatcg gaaaaaatgg aaatttaaaa ggtgaattac
    26821 aagcagataa aattgtagta aatgggtgtt ttgaagggca acttgaggct aatagtttag
    26881 aaattttagc gggcggagtt gttaatggtg atatttcaac acaaaaaatt tctatagaaa
    26941 atggcggtcg ctttaatgga actagtaaaa ttaaagaaga tactatcaaa cttattgaaa
    27001 ataacaacga agaataatgc aagcttcatt ttatgaatac ttacaaaatc caaaaatttg
    27061 tgaacttttt ctttgtaaag atgaaaaaca agcagattta ctcgctcaag tttcacgatt
    27121 taagggttta aaaacctttg ttttacctga ttttagagcg cagtttggag atgatttaag
    27181 ggctttttct aaagaacttt ttgatctttg taagatttta aatgcttatc ataaagaaga
    27241 agaaaaaaaa atccttattt ctcctttaaa tactgtttta aaaaaacttc cttcaaaaaa
    27301 acatttacaa aattatcata tcgataaaaa acaaaatttt gatttgaaat gttttgaaga
    27361 tgaaatttca agattgggat acgaatttgt agatatagtt caggataaag gtgaaatttc
    27421 aattcgtgcg gatattattg atattttttg tatcaatgaa gaaaatccta ttagaatttt
    27481 gctttttggc gaagagattg aaagtataag atattttgat ttgcaaagtc aaaagtctat
    27541 tcctaacgaa ctagaacatt ttgaaatttg tcctttttta aaatattttg acaaagaaaa
    27601 ttatgaaatt tttaaggaca aattagaaga ttttcaaagc gatactttaa tacatgatat
    27661 caattcttta gggttttggt gtattgatga tttttttgat tatttagaac ttgatttttt
    27721 agcttgtgaa aagtttgata ttaatgaata tgaaaaagat ataagttttg tgaatgcaaa
    27781 aattttacct caagctaaaa aatttaaaga attgcaaagt tcttacaata aagatttttt
    27841 tgaatttcat aaaaataaaa aaatcacact tttagctaaa aacgaagctt tatttaaagc
    27901 tttagagctt gaagatactc aaaatatcca ttttgtaaaa agtgatttaa ggcttaatct
    27961 tattagtcct gaagagctaa ttatttcttt aaatcaaaaa gaaaaacaaa aaacaagaaa
    28021 aaaagctagt ttgattatag atgagcttaa aaatggggat tatatagtac atgaagatta
    28081 tggggtaggt aaatttttag gtcttgagat gatagtgata agcggagcaa aaaaagagtt
    28141 tgttgctata gagtatcaaa attctgataa gcttttatta ccagtggaaa atctttattt
    28201 gattgataaa tatttgggcg tgagtggatc tattccaagc ttagataaac taggtaaaac
    28261 aagctttatt aaacttaaag aaaaattaaa gactaaactt ttagctatag cttctgaaat
    28321 tgttattatg gcggctaaaa gatctttggt gcaagcaaaa aaaattacag tggatttaaa
    28381 tagacagact gattttatag ctagtgcggg ttttatttat acaagcgatc aagataaagc
    28441 ctgtcatgaa attttgcaag attttcaaag tggaaaagtc atggataggc ttttaagcgg
    28501 tgatgtgggt tttggaaaaa cagaagtcgc tatgaatgct atttatccag tagttaaaag
    28561 tggattttgc gcatttttat ttgcgcctac gactttgctt tctcatcagc attataaaac
    28621 cttaaaaaag cgttttgatc cttttgatat aaaggttttt aaactggatc gctttacaag
    28681 tagtgcagaa aaaaaacaag ttttacaaaa tttaaaagaa aataaagctt gtgtagttgt
    28741 aggaactcat gcacttttaa gtgtagaatg tgaaaattta gcccttgtta ttattgatga
    28801 agagcataaa tttggagtga agcaaaaaga aaagcttaaa gaaatcactc aaaattcaca
    28861 tattttatcc atgtcagcaa cccctatacc aagaagctta aatcaagctt taagttctat
    28921 aaaatcttat agtgttttgc aaattccacc agaagataga atggatgtaa gaacttttgt
    28981 caaagaaaat gatgacgcac ttttaaaaga agctatagca agagagttaa gacgcggtgg
    29041 gcaaattttt tatattcata atcatattgc aagtatagag caatgtaaaa agcatttatt
    29101 agaacttttt tctactttgc gtattttgat tttacattct aaaatcgatg ccaagatgca
    29161 agaagaagaa atgttgaaat ttgaaaacaa agaatatgat ttgcttttaa gtacctctat
    29221 cgtagaaagt gggattgatt taccaaatgc aaatactatc atagtagaaa aaagcgatcg
    29281 ttttggcatg gctgatttgc atcaattgcg tggacgtgta ggaagaagtg ataagcaagg
    29341 ttattgttat tttttaattg aagataaaaa tgctatcaca aaagatgctt taaagcgtct
    29401 agtttcctta gaaagtaatt cttttttagg cgcaggttct attttggctt atcatgatct
    29461 tgaaattcgt ggcggtggaa atttattagg cgtagatcaa agtggacata ttgagcaaat
    29521 tggatatagt ttatatctta aaatgttaga agatgaactt aatgctttaa gtaaaaatga
    29581 agtggatcaa aaagaaaata aacttgattt aaaactcaat gttaatgcct ttttaaacag
    29641 cgaacttatc agcgaagatc gcttaagatt agaactttat agaagactta gcaagtgtga
    29701 gcaagttcat gaggtttatg agatcgaagg tgaaattgaa gatcgctttg gaaaacttga
    29761 catttatact aagcaatttt tatctttgat tactattaaa attttagctt taaataaatt
    29821 taaaagcatt agtaactatg agcaaaatat tcaatttact gctttaaatg atgaaaaaga
    29881 actcatcaag gcaaaaagca aagatgatga tgatatttta gaggcaattt taacgcattt
    29941 aagaaaggct taaaatggat tggaataaaa cttatgcagc aatttataga gcaagaaaag
    30001 attatttaaa gcctattttt gaaatcgatc ctattgcttt aaaagattta gtaggtatgg
    30061 aaagtcaaaa aaaagcactt tatgaaaata ctttaaattt cattcaagat aagggagcaa
    30121 atcacgcact tttatgggga tctaagggca ctggaaaatc aagtttaatt aaagctatat
    30181 ttaatgaatt taaagaacag ggcttaagac ttgtcgaatt aaataaagaa gatttatttg
    30241 ccttagcaga tatcatcgat gaaatcagat tagaaaattt taaattcata cttttttgtg
    30301 atgatttttc ttttgaaaag ggagatgata gttataaatt tttaaaacct ttacttgagg
    30361 gaagcataga aaaagcccca aataatgtaa ttatttatgc gagttcaaat cgtaggcatt
    30421 tattaagtga aagcattact gataatcttg atacgcaaat cacacataca gaacttcatt
    30481 taagcgatgc tgctgaagaa agattaagtt tgagtgatag atttggtttg tggttaagtt
    30541 tttatcaggg aaatttagaa gagtatttaa agatgataga tttttatttt aaagattatt
    30601 cttgtgataa agagcttttg cacgctaaag ctaaagaatt tgctactcta agagcaagta
    30661 gaagtggtcg taccgcaaag caattttatt tagcttttaa ggagaatttt aaatgactgg
    30721 agcacaaatt tttaccaagc ttttaaattt ggatttaaat tatcatgatt ttgattggct
    30781 tgaaaatcaa ggattgagtg aatttgagct tttaatttct gtcgttttaa ctcaaaatac
    30841 aaattggaaa aatgtcttaa aagctttaga aaatttaaaa aaagaaaata ttgcaagctt
    30901 agaacaaatc aatactttat ccaatttaga acttgcaact ttaattaagc ctagcggatt
    30961 ttataatacc aaaactaagc gtttaaaagg tttggtagaa agtatcataa acacttatga
    31021 aaatttagaa aattttaaaa caaatgcaag cagagaatgg cttttaaata tcaaaggttt
    31081 aggttttgaa agcgttgata gtattttaaa ctatctttgc aaaagagaga ttttggttgt
    31141 agataattat agtttgcgtt tggcttttta cttaggttat gagtttgaaa attatgaaga
    31201 attaagagaa ttttttcaaa gtgacataga gagtgagcaa gaaaatttgt ataaaatttt
    31261 aggaaaaaaa tgcgaacttt acgaacttta tcaaattttt catgctttga ttgtagcttt
    31321 tgcaaaacag agttttaaag gacaaaaatt aagccctaag ggtgaagaat ggatcaaaat
    31381 tttaaaggaa gatttatgaa agcaaaagga agtgaactta tacctgtttt aactatagca
    31441 gggagtgatt gtagtggtgg agcagggata caagccgatc ttaaaacctt tagtgcacac
    31501 aatctttttg gtatgagtgt ggttttaagt gtggtagctg aaaataccgc aagggtgatt
    31561 tctgtacacg atatacctac tcaaagcgtg gatgaacaaa tgcttgccgt gtttgaagat
    31621 atagtgccaa aggcaactaa aatcggaatg ataggttctt gtgaattaat gagctgtgta
    31681 gctaaaaatt taagcgagtt taaacctcaa aatgtagtta ttgatcctgt aatgtttgcc
    31741 aaaaatggct atgctttaat gccgcaagaa aattgtgatt ttttcaaaca aactataata
    31801 aaatttgcag acattcttac tcctaatatt cctgaagcag agtttttgtg tggttttaag
    31861 atcgctaatg aagagcagat gataaaagca gctaagcatt tatgcagctt gggggttaag
    31921 gcagttttac ttaaaggcgg acatagtgaa gcaaatgcca atgatgtgct ttataatgga
    31981 aaagaaattt atattttaaa aggcgaacgc atagaaacta aaaatactca cggtacaggt
    32041 tgtacgcttt cttcggctat tgctagtaat ttagctaaag gcaaggattt atttcacgct
    32101 gttagtgaag ctaaagagta tgtaagaaat gcgatttatt attcacttaa tcttggaaaa
    32161 ggttgtggtc ctacaaatca tttattcaag tttctagatg aaaaataaat tagatcttag
    32221 cctttatttg gttgctacta agggaaataa aagcgaggag tgttttttaa atactttaga
    32281 aaatgctata aaaggcggag taagtatcat acaacttcgt gaaaaagagc ttaatgcaag
    32341 agaattttat aaactaggct taaaggtgca aaaactttgc aagtcttata aaataccttt
    32401 tttgattaac gatagggtgg atatagcttt agccttagat gctgatgggg tgcatttagg
    32461 acaggaagat ttagaagcaa aattagctag aaagctttta ggagatgaaa aaatcatagg
    32521 cttaagtctt aaaaagttag aacaacttga gtttatacaa ggagtaaatt atctaggttg
    32581 tggagctatt aaggtaacgc ctactaaaga aagttcgctt ttaagccttg agcttttaag
    32641 tcaaatttgt gataaaagcc ctataggggt tgtagccata ggtgggattg acaaagaagc
    32701 acttgttgag ttaaagggta taaatttaag cggtgtggct gtggttaggg cgatcatgga
    32761 tgctaaagat gcttttttgg cagctaaaga gctaaagcgt aaaatctatg aaaatttatc
    32821 tcttaaatga aactcctttt gaaggggtgg aaaatcttat tttaaatgag attgtttttt
    32881 atgattttag tgtggatttg agtttgtatg atgctttaat ctgcacttca aaaaatgctt
    32941 taaaagcttt acaacatgca aaaatcactt taaatttcaa actcaattta tacgctgtgg
    33001 gacaaagtac agctcaatac gctaaaaatt taggttttaa aaagattaaa attccatcaa
    33061 aggcttatgg aaaagatctt tttcttgaat ttaaagagga gttaaaaatg caaaaatgtt
    33121 tgtatttaag ggctaaaaat attgtttcaa ctttaaattt ggatcttaaa aatgtaggtg
    33181 tggatttaga tgaaatgatt gtttatgaaa atgtttttaa aaaaggcgac aaaaagctta
    33241 tctatcctgc tatttttata ttcacctctc ctttaagtgt agaaaatttt ttaaaatttt
    33301 atagcttaaa agaagaagat aaggttgtag ttatagggca aagcacagca aagaagcttt
    33361 taaattttaa aaatctttat atatgcgaaa atcaaagtct tttagactgt gttaagctcg
    33421 ctaagacttt ggtttaattt tttaaattcc aaaaattttc tttgggataa ataataatgc
    33481 tttttgtgag taaaatttca tcattgacgt ttttatcacg atttaaagca atactaatgt
    33541 gggctataat aacaccatct ttgcttaaat ttgcatcggg attgaagttg gaaaatttaa
    33601 aattaacaca ttgtgcaata ggataaaaat attttatttt aatcaaagct tttgtgtaat
    33661 taaaatatat attgtctaaa cattctttat tttcttgctt tgcttgatat aaaaaatatt
    33721 tagaaaattg cgttgcattg tgacttaaaa tttgagcttg aaggtagtaa taactatctt
    33781 ggattatttt tggagtatag ctggatatgt ttaaggtcaa gctcattcat agacttatta
    33841 gtagtattaa aaaaattgtc caaattaaaa cataagcttt tttcacagta aaattctttt
    33901 ttcaaggcaa tgttttgttt gtctttttag gcaaattttt aatttattgt tttgcaggtt
    33961 aaatgagctt atgtttttag aaattaatcc ttgttggttt aattgttcat taaattttgg
    34021 ctttatttca tatataagtt cttcattttg caatttgata actaattgag cttgtaaagg
    34081 aataaaacta cctgtaaaat ttgcagatat accattttcc aagatagata tcttttcaat
    34141 cttattaatt ttataagcat agctaatatg ttcattgtcg ttatataaat cttttctatt
    34201 ttggagttgt gttttaaaat cagaatgagg tgaataaagt gtatgattat tttctaaaat
    34261 aagagcagaa ttaataagat aaagtttatt atcttttagg ctaattaact catcttttaa
    34321 aagacatttt aatgtattct gtgaaaatgt aatattaata caattttgta ttaatttttc
    34381 tattttaagc aagtttaaat gtgcttgagt gataagattg tttgtatgta aagcagtaaa
    34441 atttaaatga taaaaatcca ttaaaggttt tgaaagtaag ctagttataa aagtaaaaag
    34501 tattagtgat gttataagtt caaaaagtgt aaaagctttg ctcattcttt aaaataaacg
    34561 ctataatttt gatcttgaaa gtataatttt tgaaattgaa atataccatc attaacaaac
    34621 tgttcttgta aaactatagg tttcaaggct gaagtttgaa gtatggtggt tttaaaaata
    34681 ggcttttcat ataattcttc ttgaagttta tagagtcttt caaaaatatt taaattttca
    34741 tagtttttgt aaagttgaat atagtaataa aaaatgccaa tgaaaattaa agatatgatc
    34801 gttatagcac taatgctttc tataagtatg aaagcctttt tcatttagcg ctgctactag
    34861 catttatggc ttcaaaaaaa cttccgcgaa ttcctttttg ttcgagtatt tttatgcctt
    34921 ttattgtaac tccgccaggg gagcaaatat tttctttgat aatagctgga tgttcatgtt
    34981 ctagtaaagc actagagctt ttaaataaag agcgcgtaag attgagacta agttcttttg
    35041 acaaaccttc ataaactcca gcattagcaa tgctttctgc tataagtgct aaaaaagcag
    35101 gagcgcagcc gctaattgcc atagctgcat tcatttgtat ttcattatct aatttataag
    35161 ccgagccaaa agtttttaaa atgtctaaaa tttcattttc aaaatgagag tttttaagta
    35221 tatatggtgt tgttgaagcc ttgtatttag ctgctgtatt gggtattatt ctaacataat
    35281 tttgagcttt gatggtttgt agtttttcaa aatcaacatt ggctaaaaca gagattaaga
    35341 tacgtgcttg tccttttagc atttgagcaa tattttctaa agcataaggt ttaaatgcta
    35401 aaataacatc tttaccttct atgttaaaat ctttgtaaag taaggtttta aagccttctt
    35461 tggcgagggc ttgaagtttt tctatacttc ttcctactat acaaatttca taatcatctt
    35521 ttaacccata ggctaaggct gttgccatag atccatttgc aagtatatag agcattattt
    35581 tttaatataa ttagcaattt gatcagcttg aaaaaagtcg ggataattaa ctgtatctag
    35641 tatcacttgt accatagtat tattatcaag attaatgact actggagcta gaaaattcac
    35701 tgtcgattct tcaatgcttt ttgctatggc tactatatta aaaattttca tattagattc
    35761 aggtgttaaa gaaagaagct cttgataata agttggtata tcaaattcat aatcaggtct
    35821 aatcaaataa ggattaatta aaacaaaaga aaagtcttta ccatcaagac ttttaagtct
    35881 tacaaatact tcatcgatag ttgaaaattc catatttttg gtttcttcaa aacctaagat
    35941 agggcattta acagctaggg tcatgttttc tcctcaagtt ataatgttta atattttaac
    36001 ataaaataag caataatcat tccaaaattt taaattattt aattaatttt attataattt
    36061 tagaagaaca taattataaa atcgttaaaa tatatatttt tgagaatata aatcaaggtg
    36121 aagtatgaaa aaaggtattt ttttattggt ttttttaagt gtttttttta gtgcgtgtag
    36181 tacgaaaaat gatgaaggtt tatacaatct tagtgctagt gagtggtata agcaaattat
    36241 taaagatttg caggacaagg atttggaaaa agctgatgat cattataatg gtatggcaag
    36301 tgagcatgtt gccgatcctt tattggaaac tattttaatt attttagcac aagctcatat
    36361 ggatgaagag gaatataagt tagctgaatt ttatttagat gaatataata aaaaatttgg
    36421 aaattcacgc aatgctgatt atattcgtta tcttaaaatt aaggcaaaat ttgatgcatt
    36481 tgcagtgcca aatcgtaatc aggctttaat gcttgaaagc caaaaagaaa tagatacttt
    36541 tttgaaagat tatccttata cagaatatga acctttggtt caaacaatgc ttacaaaatt
    36601 taatttagcg gttttttatc ttaatagtac tatagaaaat ctataccagc gcatagggca
    36661 tgatgaaagt gcacaaattt ataaacaaag acttcaagaa agtgaatttt atcagcaaag
    36721 tattatcaaa cctgagcttc cttggtatag aagtatattt gaaagatttt aataaacaag
    36781 gaaaataaat gcagattgaa gagatacaaa attatccagc aaatttacca gtattggttg
    36841 aagatgaatt atttttatat ccttttatga taactcctat ttttattaac gattcatcca
    36901 atatgaaagc tttagatctt gcgattaaaa atgatagcat gctttttgtt gcaccttcaa
    36961 agttggaaaa tggaagaaat tttgatgaaa tttataattg cggagtgatt gggactatca
    37021 tgcgaaaagt tcctttgcct gatggaagag tgaaaatact ttttcaagga tatgccaagg
    37081 gtaaaattat agagcaaatt tctaataaac ctttagaagc caagatagaa cttataaaag
    37141 aagacttttt agaaggaact aaaaaagaag cacttcttga agttttaaaa gagaaagtaa
    37201 aaaatttggc aaatattagt cattattttt ctccagatct tttaagaaca attgaagaag
    37261 gttttgatgc atctaggatt tgcgatttga ttttaaatac tgtgcgtatt aaaaaacaag
    37321 ttgcttatga gttttttatt ttaacagatc ttgagcaaaa attagtaaaa ttaatagatt
    37381 taattgctca agaaatagaa gctaataaaa ttcaaaaaga aattaaaaat aaagtacatt
    37441 ctcgtattga taaggtaaat aaagaatatt ttttaaaaga acaattaaga caaattcaaa
    37501 aagagcttgg ttctgatacg caaaaagaag atgaggttag agagtatcaa aagcgtctgg
    37561 agttaaagaa gaaatttatg cacgaagacg cttataaaga aatcaaaaaa caaattgaaa
    37621 aattcgaacg cattcatcaa gataattccg aagcatcgat gattcaaact tacatagaaa
    37681 cagcattaga tgttcctttt gaaaaaattt ctaagaaaaa acttgatatt aaggaagttt
    37741 caaaacagct caaccatgat cattatgcat taaataaacc aaaagaacgc atagaagaat
    37801 attttgcagt tagggaactt ttagaaaaaa gaaaaatagc agaaaaagat ggtgctaaag
    37861 ttatactttg tctttatggg cctcctggtg ttggtaaaac ttcactggca aattctgttt
    37921 caaaagcttt aaaaagagag cttattcgta tagccttagg tggacttgaa gatgttaatg
    37981 agctgcgtgg tcatcgtaga acttatatag gcgctatgcc tggacgtatt actcaaggac
    38041 tcatagaggc aaaacaaatt aatcctgtaa ttgtattgga tgaaattgat aaattaaatc
    38101 gcagttttag aggcgatcca agtgcggtgc ttttagaaat tttagatcca gagcaaaatt
    38161 ctaaatttag ggattattat ttaaatttta atattgattt aagtaaagtc atttttatag
    38221 caacggcaaa tgatattagc aatattcctg cacctttaag agatagaatg gaatttatag
    38281 aacttagctc ttatactcca agtgaaaaat ttcatataat gaaaaaatat ttaattccag
    38341 atgagcttaa aaaacatggc ttaaaatcca atgaattatt tattgatgat gaaactatag
    38401 agctaatcat tagcgattat actcgtgaat caggagttag aaatttgcgt cgcaaagtgg
    38461 cagagttgtg tcgtaagagt gctaaaaaac tacttttaga aaatattaaa aaagtcatta
    38521 ttaatacaaa aaatttgaat gaatttttag ataaaaaagt ttttgaaata gaaaaaaata
    38581 atggagaaaa tcaagtaggt caggtcaatg gtttggcttg gacaagcgta ggtggagatg
    38641 ttttaaaagt agaggctgta aaaattaaag gtaaaggaga attaacgctc acaggaagtt
    38701 tgggtgatgt aatgaaagaa tcagctagaa ttgcttttag catgataaaa gttttaatcg
    38761 atgaaggaaa aataaaaata cctaaaaaaa taattattga tcctaaagtt aatgtttatg
    38821 atagttataa tattcatata catgtgccag atggagctac tccaaaagat ggcccaagtg
    38881 caggtattac gataagcaca gctattgctt ctatttttag tgataaaaag gttaaagcag
    38941 atgttgcaat gacgggtgaa atagatttaa aaggaaaagt tttaccaata ggcggattaa
    39001 aagaaaaatt aattgcagct tataaagcag atataaaaac agctttaatt ccaagaaaaa
    39061 attacgaaag agatttaaaa gatattccta gtgaggttag agacaatatg gaaatcattg
    39121 ctgttgatac tttcagtgat gttttagaat atactttggt ttaactttat tttgagaata
    39181 aatgtataag aaagcaaact ttttacaagt ttgctttaaa agattatagt ccttcaaaag
    39241 gattattgat tacttctttt ctatccacta tataagggat aagggctaca tgtcttgcgc
    39301 gtttgattgc aacttctacc atttcttggt attttttgct tgtgcctgtt aaacggcgtg
    39361 gcatgatttt aaatctttca gataaagcat gttttaacat tgctgtatct ttataatcaa
    39421 taaattcaac ttttgcttca gtgtatttgc aatatttgcg agagtatttt cttttttctg
    39481 ccatagttta tcctttaaaa tggtaaatta gtatcatcgc tatcataagc atcgatatca
    39541 atttctttta atttttcttc gtgttgtggg ttttggtttc tttgtggagc agggtttgct
    39601 tttgctttat taaaattttg attttcactc atataaggat catagctttg attttcatag
    39661 tttccactat aattgttgtt tgaaaagcta ttattgccaa aatttccgcc ttgttgtgga
    39721 gcattggaat tgccaagcat ttccatattt tcaacttgaa tgctatgttt agagcgattt
    39781 tgtccatttt gatcactcca ttgttcaaat ctcaaacgtc cttctatgag tacttttgaa
    39841 ccttttgtaa ggtattggtt tgcaacttct gcggtgcgac cataaaagct tatatcaata
    39901 aagcaagttt cttctctttt ttctccattt gcggtaaatc ttcttgttac tgctatagcg
    39961 gaagctccaa tagcactacc gctttgtgca taacgcattt ctatatcacg tgtaagattt
    40021 ccaaccaaaa caactttgtt aaacatcttt ttccttattg aatttcagga gcatctaaag
    40081 gtttaatttc ttttttagat tgcttaatcc cgtggcttag tttttcccaa gctgcaattt
    40141 cttttttatt ttcatatttt acgattaaaa atcttattac ttcttcagtg attcttaaca
    40201 ccctttcaag ctcagcgatc aagtttgtag gagctttgaa ataaatcaca aaataagttc
    40261 ctctttcgta ttttttgatt ttatacgcta attttctagt acccattgga acaacagttt
    40321 caatttctgc actatttttg gttaggactt ctttaacgaa ttccaacttc gcattcactt
    40381 cctcttcagt aagtgttggt tttaagataa ataaaacctc ataatgtttc atcttttctc
    40441 cttatggata ttaaagccca tttttatgag caaggatttt gcataaagca agactagatt
    40501 atatcaaaat atacttaatt agtcttgaat acttaaggtt ttatctaaat ttgttttgat
    40561 ttcttcaagc atagcaaaac gttttttata catggagcgt ttttgcgaag ggatttcttc
    40621 taggtttttt tgagagtggt ggagtttata gtatttgtgt ttattgattt ttattaattc
    40681 tccaccattt tctagccaaa ttttttgata atctacaaaa tagccttttt cttttccttt
    40741 ttgagaacgg atttgatttt tttcatgtac acctaaagta gcttgaagtt ttaaaatttc
    40801 acaaagcatc ttagagcatt ctataagtaa agcaacaggg cgcaaaccat gacatttttt
    40861 agttaaaatt ttattaattt ctaaaatatt aaaatctttg tatttatgtc cttgtataca
    40921 agaaagtaga agattgtttt ctaaagtaaa gcaaaaatta cattgtaaga ttgtgtattt
    40981 tttaaatttt aaaaaaaaag cccaaaaacc ttcttcgcaa acattatagt tatatcctaa
    41041 aaaaagctca aaatcttcat caaaagaaaa aattatttgt tcctcgggaa gaaatttaaa
    41101 acaagcgagt cccttatcaa catcataaat aagtgtttta acacgttcat ttgctttaaa
    41161 acttttatcg caaaatcttc ttgtagcatt gtaacaagca tagggtcttt gagagaaaaa
    41221 gtcttttaaa tgtttatttt tttctttatt aagcgttttt tctagaagtc ttacttgagg
    41281 aaaatataaa atttttcttg cttgaaaacg caaatagcgc caaaagatta tactttttct
    41341 tctatcagta aaatttggaa tagggtagga aaatttttta ttcacctata atccttgata
    41401 tatcattata agttgcaaag agcattaaac ttaaaagtat tgccatgcct gtatagctta
    41461 aatattcaaa agtacgctgt ggaactttgc gtctaaaaat catttcataa agattaaaaa
    41521 gtatatgtcc tccatcaagc ataggaatag gtaaaagatt taaaatgcct aaatttatag
    41581 aaattaaagc agtgataaat aaaagcaaag taaagctatt ttgtgcagcc tttgaggtaa
    41641 tttcagtcat ggtgataata ccgcctaaat tttttgcttc aacttcacca cttatgagtt
    41701 ttacaatacc cttgatgatg agtgtagaag cttgaaaact ttcttgtgcg gcatatttaa
    41761 aactttctaa accttggtgt tttacaagag tgcttgtccc atttggactg actccaagtt
    41821 gaggtttttc aacgatttgt ccaaagtcat tgtatccttg tcctattttt ggagttaaaa
    41881 taaattctaa attttttcct tctctattga ttagtatttt caaaggatct aaacttaaat
    41941 gctttgaaat ttcatcaaag gtttgaattc ttataccgtt aatttctaag atagtatcat
    42001 ttttttgaag tcctatttct tgtgcagcag agtttggcgc tatgtttcct atttgcggag
    42061 caagtttgtt tagacctaaa tttcctatga taatataaag aaaaaaagct aaaattagat
    42121 taaaaaatgg tccagcaaaa agaatataaa tcttttttaa aggacttaaa atgctatagc
    42181 tatctttgtc tagattttca aaaccaggac gcatatcatc ttgtccttta agtttaacat
    42241 atcctccaag tggtaaagtg cttaagcgat agtttgtgcc tttaaattca cgctctataa
    42301 gactttttcc aaatcctata ctaaaaactt caacttttac acccaaagat cttgcagcca
    42361 aaaaatgtcc taattcgtga aagaaaatta aaaatgagat gactaaaaca gttgctaaaa
    42421 attcaataga ataaaattta attcccaaag tcaaaataac aattaaaagc aataaagatc
    42481 tcatttttct cctttttttt gagcttttat ataagtatag atgtattcaa atccagaaca
    42541 aagagttaaa aacaaagcta tgtaaagtag aatttcaccg cctatccact ccatgattaa
    42601 aaatcctatc gcagtcattt gaaaagcggt tttaagcttg cctgcaaaag aagcattgac
    42661 atttaaattt tcactgatca ttacaactct aaaacccgtg ataaaaaatt cccttactag
    42721 tataatataa attacccatt cattagcttt tcctgtaagt aaaagcccta aaaaagctgc
    42781 taaaacaagc attttatcgg ctaatggatc taagattcca cccagttttg tagtttgttt
    42841 ccaagttctt gcgatgtatc catcaaaaaa atcacttaaa gctgctaatg aaaaagttaa
    42901 agcagcaaaa tagttaatcc aactttgatg aatattttca aaatgatgaa ttaataaaaa
    42961 aaatagcaaa ggcgctaaaa ccattctaaa aatcgccaag atattgggta aattcataac
    43021 aagccttgtg aaattaaatg taaaattata atcaaaattg tataaaattt aagcaaagac
    43081 ttagtaaaaa tacaaaaaag aatcagttta tttttattta aattttgctt ttaagcaaaa
    43141 tttaaataaa ttttacaact tcatcaaaac taaaacgatt tttttgagga tttttttcat
    43201 cgttgcaata tcctaaagcc accaccaaac ttgatctttc tttttgaata tcaagtgata
    43261 aataagaatt aagcttttgt ttatcaaaac cacctatagg gcagcttgct atatttaaag
    43321 cattagcact gtaaagtatg ctagctagag ctatatgagc ttgttctctt gcataagata
    43381 ttttttcttc ttgatttaga gattttaaaa aaggcatata agcatctaag catttttgaa
    43441 tttctgtttc actcatatct ctttttctaa gtttttcttc aaaataatcc aaaaaatcaa
    43501 gtcttgaaat gatgataatt aacgcagcgc aatcttttac atgtttttgc tggttgcaaa
    43561 ttttagaaag ttcttctttt cttttctcat cttgcactac tataaatttc caaggttcca
    43621 gtcctaagga gcttgggctt aatcttgcta tttctaaaat agaatttaaa tcctcttttt
    43681 tgagtttttc atttttaaaa tttctacaag aatatcttgt gctaaaaatt tcaagttctt
    43741 ttttcattat ttttccttgt aaaattcgac gacttcatta aaatttaagc gttgagtaga
    43801 atattttggt tcatgggctt tatatcctaa ggataaaatt acagcagttt caaaaggata
    43861 agttaaatta agaaaatcat caactttagc tttttcaaag ccacctatca tacaagaatc
    43921 aatacctaag ctcattgcag ctagtgacat ttgcatcata gcaagatagc attgaagttg
    43981 tgcataatga tagagttcat tatcattcat tgcattggtt ttatgagtat aaatttctaa
    44041 aattttttga aaattttctt cgctagaact tgagaaacga cgcacttgtt tttgtgcaaa
    44101 ttcatctttg ctttgaagat cttttcttgc tagaaaaata atattatgac tcgcacttgc
    44161 tacattttgt tgattgtaac atagggttga gagtttaaga ttgtgttctt tttgttctaa
    44221 tactacaaat ttccaaggct caaatccatg tgagcttggg gctgactcca ctttctaaga
    44281 taaaatgcaa atccttttca ttgatttttt tatcattaaa aagtttacaa gctctgcgtt
    44341 ttgaaattag ttctttaaaa ttcattttat tccttaaaat caaaaataat aatattaatt
    44401 ataaaatgca aagcttaatc aaaaaatatt atagtttgat atttttctta aaaacaaaac
    44461 cagatttttc aaaacccatt ttttggatat aaaattcatg agcttgtgtt ctaaaaaaac
    44521 ttgaacttag ttctaattct tcatatcctt gattttttgc ccaaatttgg atttttttca
    44581 aaaaagcttg acctatacct tttcctctta aagtttcatc tatgacaaaa tcacaaatat
    44641 aaagacaatg attatgataa agtacattaa agggcatgac tccacaagct gctttgtagc
    44701 ttccctcatt ttcataggca aaaagtttat aatgttgagt ttgtgtagca agttggaatt
    44761 tatctaaaaa atctttcaaa gataggttat ttcttaattg ttttatcaag ggataaattt
    44821 tttccaagtc ttcttttagc ttaatttctt tcatttttaa atcccttaaa tttcaaaaat
    44881 ttcaggtttt aattttaaaa gtaagcaaaa agttgccaaa acagcttgtt cttgcataaa
    44941 ttcacgatct ccatctaaat aaagcgtttc ttggataaaa gttccatctc taaacattgc
    45001 acctatataa atagtgcctg attttatttt tccctcatct ttttcgccaa ctactccgct
    45061 aatagctaag gcaaaatcag gattagctgt tttaaaaata ccttttagca taaaataaac
    45121 acaacgttca ctgtattcgc cattactttc taagacgctt tcgctaattc caagccatcc
    45181 gtgtttgatg cggttggaat aacttacaat agaaccttca aaaatttcac ttacacctga
    45241 aattttggtt aaggtacttg cacaaagtcc acctgtgcaa ctttcagcaa aagaaatttt
    45301 taattttttt tctaaaagtt tagagcttat aaaatgtatg ggatctttac ctaaaaatac
    45361 cttttgtcca aaaagatttt ttacgctatt taaaaaacca tcaagttttc caaaattagc
    45421 gcaagtggcc ttaataagca caagattatc taaaagcttg gttgatttta tacttatctc
    45481 ataagatttt gttagggttt gcagtagcaa tatagcgctt tcatcatcca tgccaaaaat
    45541 gcaaaaatat gcaaaattta attttatatg cccaagaaga ttgggtaatt tttcgcttgg
    45601 atttatttta acgacattaa tttttgaatt tgaaaaatta cacacaaagc tatttttact
    45661 aaattctgct ttatctggaa ccaaggtatc atcttttaag ataagattat catcatttaa
    45721 agttgctaaa attttagcaa cagtcgcata atgcaaagag cttgtaaata aagtgataaa
    45781 atcatactga tttaagagat tttcaagtaa aaaaggtaaa tctttatcgg ttttattttg
    45841 tatgcgaatt tcgttgattt ctttaaattt ttcttcataa gttctataaa tataattttt
    45901 gaatttttcg tttatagtaa gctcatctcc tataagataa agcaaatgtt tcataaattt
    45961 tccttttttt cttataatta tagccaaaaa caaagtagaa attaaagcta atttgagtag
    46021 aatttaagat tattaaaaat taggtggaaa aaatggacta caaagaaact ctacttttgc
    46081 ccagcactac ttttgctatg cgggcgaatt tagcggaact tgaaccgcaa agatttaaaa
    46141 aatggtttga gcaaaattat gcttatgaaa aaatgaaaga aaatcgcaaa aatgcgaaaa
    46201 aaagttttac cttacacgat ggcccccctt atgctaacgg acatatccat ataggacatg
    46261 ctttaaataa aattttaaaa gaaactatta tcaaaacgca ttattttaaa ggtgagagtg
    46321 tgcgttttac tccagggtgg gattgtcatg gtttgcctat agaacaacaa gtagaagtaa
    46381 agcttggaga aaagaaaaaa agcttaagta aaaaagaaat tcgtgagttt tgcagacaac
    46441 atgcgagtga atttgtagat atccaaagag aagaatttaa aaatttaggc attattgcag
    46501 attgggataa gccttattta actatgaaat ttgagtttga agcagcgatt tatagaactt
    46561 tatgcgagat tgctaaaaaa ggcttacttt gcgagcgttc taagcctgtt ttttggagtt
    46621 gggcggcaaa gtcagcttta gcggaagctg aagtagagta tcaagataaa gaagattatt
    46681 ctatctttgt ggcttttgat ttagatgtaa aagcttgcga aaaattaggc gtttcaaaag
    46741 caagcgcagt gatatggaca actacgcctt ggactttggt ggctaatcaa gctatagctt
    46801 taaatcctaa tgaaaattat gtgatcacca aagagggttt gatttttgca agtgctttac
    46861 ttaaaagtat ggtagaaaaa ggacttacaa gtggagaaat tcaaaaagaa ctaaacgcaa
    46921 aagaatttga aaaacttgaa gctatcaatc ctttaaatgg aagaaaatct gttttaatta
    46981 tgggcgagca tgtattgatg gatggtggaa gtggacttgt acatactgca ccaggacatg
    47041 gcgaagatga ttattatgct tgtttgaaat atggcattga ggttttaatg cctgttgatg
    47101 atagtggatg ttatgatgaa actttaagag ctaaaaggct tttgccttct catttgcttg
    47161 aagagtttat aggtcttcat atttttaagg ccaatgaaaa aattttagaa cttttaggcg
    47221 aaaaactttt acattcttct aaatttatac actcttatcc attttgttgg agaacgcata
    47281 agcctgtgat ttatagagct actaaacaat ggtttatttt aatggatgaa ccaaaacttc
    47341 aaggaaaaac tttaagagag tgtgcaaaag aacaactttt aaaaacaacc ttttatccgc
    47401 aaagtggggt aaaaagaata ggttctatgg tggaaaatcg cccagattgg tgtatttcaa
    47461 gacaaaggga ctggggaacg cctatagcct tttttaggga taaaaacact aaagaagtga
    47521 tttttgatga tgaacttttt gactttgtag cggctatttt tgaaaaacac ggcgctgatg
    47581 cgtggtggga gtttgaaatc aaagatttaa ttcctacaaa ttcaaaatac aacgctgaaa
    47641 atttagaaaa agtatatgat attttagatg tttggtttga tagtggaagt acttttaatg
    47701 cggttttaaa tagcggactt tatgacgcag gagaaaaaag agcaagtatg tatttagaag
    47761 gaagcgatca acatcgtggt tggtttcaaa gctctttgct tgtaggtaca gcgatcaatg
    47821 aaagcacacc ttatgaaagc attttaactc atggttttac caccgatgaa aaagggcaaa
    47881 aaatgtctaa atctaaaggc aatgtgattg ctcctgaata tgtagcaaaa acctatggag
    47941 ttgaaatttt aagactttgg atacttttaa gtgattattc aagtgattta aaaatttcag
    48001 acaatatctt aaaacaagtg ggtgaacaat atcgcaaaat aagaaacact ataagatttt
    48061 tacttgccaa tacaaatgac ttaaaagatt tagaagttaa agaatttagc tttattgata
    48121 aatggatatt aagccgtgca actaaagttt ttaaagcaag caaagaggca ttttttgctt
    48181 atgaatttgc taaaggtttt agtttgcttt taaatttttt aagtgcggat ttaagtggga
    48241 tttatcttga tatcagtaaa gatagacttt attgtgatag cgaaaatgct caaagaagaa
    48301 aatccgctca agtggctatg gctttgatag caaaagagct tttaaattta cttgcttcaa
    48361 atttaagcta tagtgtagat gaggctttag aacatgctaa tgttttaatc aaaggtgatg
    48421 caaaagatgt atttgatcta agtttaactc aagattttga ttatgatttt ggtatagatg
    48481 atacattttt aatgagtgct agagagaaat tttttgaaca aattgatata cttaaaaaag
    48541 ataaaatcat caaatctact ttggaattaa atttaaacat cagttttaat aaattcccaa
    48601 atgaggaatt agccgattgg tttatggtaa gtcaaatcag caatgaaaat gaagaaattt
    48661 tggctgaatt tgaagtagag aatgagaaat ttaaaatcac caaagcttcg ctttgtaaat
    48721 gcccaagatg ttggaaactt caaagtaaag atgaagaaac accttgttta agatgtgaag
    48781 aagttttaaa agggattcaa tgctagaaaa tcctattcca aatagcatta tcattacaac
    48841 tgtagcggtg gttttggctt ttagtgcttt agcagtattt ttgatcaaaa aaacaaagga
    48901 aaataaatga taactttaaa agaagcttta aaatactcca aagaagaact tgaaaattta
    48961 aaaaaagaac tcaatgaaaa agcaaaaaaa gaaaaaaaaa taggtgctta tatcgaacaa
    49021 tttttagata aagacttaag tgtttcaggt gaaggtgtgc ctgtagctat aaaagataat
    49081 atcagcgtaa aggactggga gcttactagt gcgagtaaga ttttacaagg ttatatcgct
    49141 ccttatgatg caagtgcaat tgttaattta aaagctaatg gtttttctcc ttttgggcgt
    49201 tgtaatatgg atgaatttgc tatgggaagt tcaacagcga gttcttatta tggcaaaact
    49261 ttaaatcctt taaattttga gcgtgttcca ggtggatcaa gtggtggaag tgctgctgcg
    49321 gtagcgggtg gcttggcttt ggcaagtttg ggttctgata caggaggatc tgtgcgtcaa
    49381 cctgcagctt tttgtggttg tgtaggattt aagccaagtt atggaagagt gagtcgctat
    49441 ggtttggctt cttattcttc aagtttggat caaatcgggg ttttaacgca aaatgtagaa
    49501 gatgcggcaa ttttatatga tgcgatcgca ggatatgaca aaatggatag cacgagtgca
    49561 aatatcgagt ttatcaaaac cgctccaaat ttaaatgcaa ataaaaaatt aaaaattgca
    49621 gtgattgaaa attatgtcaa tgatgcagat agtgaagtaa aaaatgcact tttaaaaacc
    49681 atagatatgt taaaagctaa tggacatgag attgtatata aaaatttgct tgattctaag
    49741 tttgatattg cggcgtatta tatcatcgca acagctgaag caagtacaaa tttaagtcgt
    49801 tatgatgggg tgcgttatgg caagcgttct gaaaatatcc aaaatttaaa agaaatgtat
    49861 gtaaatacac gcagcgaagg ttttggagaa gaagtaaaaa gaagaatttt gttaggaact
    49921 tttgttttaa gcagtggata ttatgatgcg tattatatta aagcacaaaa agctagagct
    49981 tttattaagg caaaatatga agaaattttg caagattgtg atcttatttt tatgcctgta
    50041 actcctacaa cggcttttaa atttgatact caaaaaagcc ctatgcaaac ttatttagaa
    50101 gatgtttata ctatctctgt aaatttagca ggacttggag gcattagtgt gcctgttgca
    50161 aaagataaag aagggcttaa tatatcagca caactgattt gcaaagctta tgatgaacaa
    50221 accttgttag atggggcttt aagtttagaa caaatgatta aacattaagg atgaaagatg
    50281 aaaattgtaa aaagagcttt aacttttgaa gatgtattat tgcgtcctgg gtattctgaa
    50341 gttctaccta aggaagtaaa aattcacact aaactaacaa aaaatatcac tttaaatatg
    50401 cctttaatct ctgcggctat ggatacagtt accgaacaca gagctgctat catgatggca
    50461 agacttggag gacttggagt gattcataaa aatatggata tagcctcgca ggttagagaa
    50521 gtaaaaagag tgaaaaaaag cgaaagcggg gtgattatcg atcctatttt tgtaagtcct
    50581 aaggcaagtg ttgcggaggc tttagaaatt atggcagagt atagaatttc aggtgttcct
    50641 gtagtagatg aagataagaa actaataggc atactcacca atcgtgattt aagatttgag
    50701 agtgattttt caaatttggt tgaaaatgtt atgactaaaa tgcctttaat cactgctcca
    50761 aagggttgta ctttagatga tgcggaaaaa attttcagta ccaacaaagt agaaaaactt
    50821 cctatagtgg atgaacaagg acgcttggaa ggacttatca ctataaaaga tcttaaaaaa
    50881 cgcaaagaat atcctgatgc caataaagat aattttggaa gattacgcgt gggtgcggct
    50941 ataggagtag ggcaaatgga tcgtgtggat gctttagttg aagcaggcgt tgatgttgtt
    51001 gtgcttgatt ctgcgcatgg gcattctaag ggtattattg atacagtaaa agcaattaag
    51061 gctaaatatc caaatttaga tcttatcgca ggaaatatcg ccactgcagc tgcagcaaaa
    51121 gcactttgtg aagcaggagt agatgcggtt aaagtaggta ttgggccagg aagtatttgt
    51181 actacacgta ttgtttcagg tgtgggcgtg cctcaaattt cagccattga tgaatgcgta
    51241 gaagaagcaa ataaatttgg cgttcctgtg atagccgatg gcgggatcaa atattcaggt
    51301 gatatcgcaa aagctttagc tgtgggtgcg agttctgtta tgataggatc tcttttagct
    51361 ggaacagatg aaagtccagg agagcttttt acttatcaag gaagacaata taagtcttat
    51421 cgtggtatgg gctcacttgg tgctatgcaa aagggaagtt cggatagata ttttcagcaa
    51481 ggtactgctc aagataaact cgttcctgaa ggtatagaag ggcgtgttcc ttatgtggga
    51541 agtataagaa gcgtggtgca tcaactttta ggaggtttgc gttcttctat gggttatgtt
    51601 ggggctaaag atatagaaga ttttcaaaaa agagccgaat ttgttgaaat taccactgca
    51661 ggacttaaag aaagtcacgt gcatgatgtt actatcactc atgaagcacc aaactacaag
    51721 gttaatcatc aatgagtttt gaagaaaatt taaaacacgc taatgaatct ttggaaaaat
    51781 taaataatca agagcttgcc ttagatgaaa gtgtaaaaat ttataaagaa ggtttagaga
    51841 gtatcaaaaa agcaagactt gagcttgaaa aagcaaaatt agaagtggag caaattgatg
    51901 agtaaaatag cagctttaca gtttccaact ttagctttaa gtgaatcaag gcttgattat
    51961 tatcttaaag cttcaaaaga caatggagta aatttagtag ttttgggaga atatgtgatc
    52021 aacagttttt ttacagaact tttgcatatg ccaaaaaata tgataaaaga acaaagcgaa
    52081 gctaaaaaag aaagcttgat taaacttgct aaaaaatacg aattagaaat catcgctcct
    52141 tatgtaagcg ttgaagctaa aagttataaa aaactttgct taaaagttac tccaaatggt
    52201 gtgaaaagtt atgaacagca aattttaatg ccttatgaac attggaatga agaaaaattt
    52261 ttcagcaaca aaactccatc agaattaaaa atttttactt ttaattatga aaaattaaaa
    52321 tgtgctttgc tttttggttt tgagacacat tttgatattt tttggcaaca gattatggcg
    52381 aaaaaaattg atttggttat cgttcctagt gcttgtacct ttgaaagcaa acaaagatgg
    52441 gaagaacttt taaaaacaag agctttttta aattctacaa gcattttaag agtaaatcgc
    52501 ataggcaaaa caaaagatga gtggaatttt tacggcgata ctttgtttat taatgctttt
    52561 ggtgagatag aaagtaaatt gggttctgaa gaagaaatgc ttattataga gcctaaaaaa
    52621 agtgatgaag caagaaaact ttggggtttt gataaaattc ttaagaattt ttaaagaagg
    52681 tgaatatgag aaaaatttta cttcaaattt ttatttttag tgtattattt atagtaactt
    52741 ttaccattaa tcgtgtttta atgcaaaatt cttttatccc tactggttta attagtgata
    52801 aaaatgaaat ctttttaatg tatcttttag gtgtttttca tgatataaga tttttaagcg
    52861 cagcgttttt accattcttg ctttgtggtt ttttaagttt aattttttct aatataaaaa
    52921 taaataataa gttagtaata tatagtaaaa atttttattt cattttttca agcatttata
    52981 taattgttat ttcttgtctt tgtataggat tttcttatgc aaaatactat tattacgaaa
    53041 tttacaagac taaatttgat atttttatgt ttactctaaa agatgataac gcaaaaacta
    53101 ttttaagtat tatttatcat gattatccaa ttttaaaaat tttagcttta atgttgattt
    53161 ttggagtttt tgt
//
LOCUS       DARGBD010000002        43383 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.002, whole genome shotgun sequence.
ACCESSION   DARGBD010000002 DARGBD010000000
VERSION     DARGBD010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 43383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43383
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.002"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(115..1113)
                     /gene="mnmH"
                     /locus_tag="SFZ04_000058"
     CDS             complement(115..1113)
                     /gene="mnmH"
                     /locus_tag="SFZ04_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEG8064386.1"
                     /translation="MLNEVDFAEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKARGASYICQNMSKHILELAHKFRIGDKIGIYCSRGGLRSKS
                     IAVILSELGYRVVRLKGGFKAYRSFLAHYFDNEINLDFFALCGNTGCGKTELLELLPH
                     HLNLEKMANHLGSSFGDILGKQPTQKAFEANLFYTLNSLKDFIFIESESRKIGEIVLP
                     LKLYEKMQKAFKIHCFCSLEKRIDRIQKIYQEKMTPLKFKECLAKISPYISVNFRQDL
                     LKSYEQREWQRLIALLLAYYDKSYKKPQKIDFELNTDDIFKAKEELLGYFKTQLLF"
     gene            complement(1103..1588)
                     /locus_tag="SFZ04_000059"
     CDS             complement(1103..1588)
                     /locus_tag="SFZ04_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEG8064387.1"
                     /translation="MQYLYAPWRSEYFEKEKSECPFCDCANKIKSDEELGVIFRAKYC
                     FGVMNRYPYSAGHFMIIPYLHEEHIENLSDEAWQEISQFVRLGVRILKSELHAGGVNI
                     GMNLSKDAGAGIAPHCHYHLVPRWVGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNV
                     K"
     gene            complement(1599..2375)
                     /gene="trpC"
                     /locus_tag="SFZ04_000060"
     CDS             complement(1599..2375)
                     /gene="trpC"
                     /locus_tag="SFZ04_000060"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEG8064388.1"
                     /translation="MILDKIFEKTKEDLKERKAQLPYDMLGRSLASNPFFPKDVKAAL
                     KRIENEVRIIAEVKKASPSKGVIRENFDPLDIALKYEKNGAAAISVLTEPHFFQGSLE
                     YLSMIRRYTHTPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFSGADIIGINHRNLDDFSMDMNLCEKLIPQIPNSKIIIAE
                     SGLEDKDFLRHLQNLGVDAFLIGEYFMRQNDEGEALKALL"
     gene            complement(2372..3649)
                     /locus_tag="SFZ04_000061"
     CDS             complement(2372..3649)
                     /locus_tag="SFZ04_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEG8064389.1"
                     /translation="MYRYLLFVLVAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELDNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALKKEPQNLYYLDSLAWGYYKQGDCKK
                     AWEILKQTLEDKEFANSDESKAHAKAIKACIKP"
     gene            complement(3622..3996)
                     /locus_tag="SFZ04_000062"
     CDS             complement(3622..3996)
                     /locus_tag="SFZ04_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEG8064390.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVECEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            complement(3986..4687)
                     /locus_tag="SFZ04_000063"
     CDS             complement(3986..4687)
                     /locus_tag="SFZ04_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEG8064391.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNKIQGDIFHDDFNQFQIIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLAKTNSMLKPNGALYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            complement(4693..4842)
                     /locus_tag="SFZ04_000064"
     CDS             complement(4693..4842)
                     /locus_tag="SFZ04_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064392.1"
                     /translation="MIKIAFFITFVISFLAAQSPVNFKEDNNITKERNIFKEQSPKRI
                     KIPTH"
     gene            complement(4860..4936)
                     /locus_tag="SFZ04_000065"
     tRNA            complement(4860..4936)
                     /locus_tag="SFZ04_000065"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4900..4902),aa:Arg,seq:cct)
     gene            complement(4965..7040)
                     /gene="fusA"
                     /locus_tag="SFZ04_000066"
     CDS             complement(4965..7040)
                     /gene="fusA"
                     /locus_tag="SFZ04_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEG8064393.1"
                     /translation="MSRNTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(7054..7524)
                     /gene="rpsG"
                     /locus_tag="SFZ04_000067"
     CDS             complement(7054..7524)
                     /gene="rpsG"
                     /locus_tag="SFZ04_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEG8064394.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(7593..7979)
                     /locus_tag="SFZ04_000068"
     CDS             complement(7593..7979)
                     /locus_tag="SFZ04_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEG8064395.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            complement(8099..12652)
                     /gene="rpoC"
                     /locus_tag="SFZ04_000069"
     CDS             complement(8099..12652)
                     /gene="rpoC"
                     /locus_tag="SFZ04_000069"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEG8064396.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKQGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPIVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(12645..16781)
                     /gene="rpoB"
                     /locus_tag="SFZ04_000070"
     CDS             complement(12645..16781)
                     /gene="rpoB"
                     /locus_tag="SFZ04_000070"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEG8064397.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFILTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(16890..17267)
                     /gene="rplL"
                     /locus_tag="SFZ04_000071"
     CDS             complement(16890..17267)
                     /gene="rplL"
                     /locus_tag="SFZ04_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEG8064398.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMIAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(17288..17767)
                     /locus_tag="SFZ04_000072"
     CDS             complement(17288..17767)
                     /locus_tag="SFZ04_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEG8064399.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLGVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(17919..18620)
                     /locus_tag="SFZ04_000073"
     CDS             complement(17919..18620)
                     /locus_tag="SFZ04_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEG8064400.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(18675..19100)
                     /gene="rplK"
                     /locus_tag="SFZ04_000074"
     CDS             complement(18675..19100)
                     /gene="rplK"
                     /locus_tag="SFZ04_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEG8064401.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(19126..19659)
                     /gene="nusG"
                     /locus_tag="SFZ04_000075"
     CDS             complement(19126..19659)
                     /gene="nusG"
                     /locus_tag="SFZ04_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEG8064402.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(19669..19848)
                     /gene="secE"
                     /locus_tag="SFZ04_000076"
     CDS             complement(19669..19848)
                     /gene="secE"
                     /locus_tag="SFZ04_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEG8064403.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVVVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(19867..19942)
                     /locus_tag="SFZ04_000077"
     tRNA            complement(19867..19942)
                     /locus_tag="SFZ04_000077"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(19907..19909),aa:Trp,seq:cca)
     gene            complement(19955..20113)
                     /gene="rpmG"
                     /locus_tag="SFZ04_000078"
     CDS             complement(19955..20113)
                     /gene="rpmG"
                     /locus_tag="SFZ04_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEG8064404.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(20166..21365)
                     /gene="tuf"
                     /locus_tag="SFZ04_000079"
     CDS             complement(20166..21365)
                     /gene="tuf"
                     /locus_tag="SFZ04_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEG8064405.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(21434..21508)
                     /locus_tag="SFZ04_000080"
     tRNA            complement(21434..21508)
                     /locus_tag="SFZ04_000080"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21474..21476),aa:Thr,seq:ggt)
     gene            complement(21613..21689)
                     /locus_tag="SFZ04_000081"
     tRNA            complement(21613..21689)
                     /locus_tag="SFZ04_000081"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21653..21655),aa:Gly,seq:tcc)
     gene            complement(21696..21781)
                     /locus_tag="SFZ04_000082"
     tRNA            complement(21696..21781)
                     /locus_tag="SFZ04_000082"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21745..21747),aa:Tyr,seq:gta)
     gene            complement(21831..21906)
                     /locus_tag="SFZ04_000083"
     tRNA            complement(21831..21906)
                     /locus_tag="SFZ04_000083"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21871..21873),aa:Thr,seq:tgt)
     gene            complement(22021..22758)
                     /locus_tag="SFZ04_000084"
     CDS             complement(22021..22758)
                     /locus_tag="SFZ04_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8064406.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDKGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHK"
     gene            complement(22760..23416)
                     /locus_tag="SFZ04_000085"
     CDS             complement(22760..23416)
                     /locus_tag="SFZ04_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8064407.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(23409..24110)
                     /locus_tag="SFZ04_000086"
     CDS             complement(23409..24110)
                     /locus_tag="SFZ04_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8064408.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACVIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
     gene            complement(24126..24722)
                     /gene="nssR"
                     /locus_tag="SFZ04_000087"
     CDS             complement(24126..24722)
                     /gene="nssR"
                     /locus_tag="SFZ04_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HEG8064409.1"
                     /translation="MKDYLELLSSVGKLKKFQKNSILFYEGEEAKKFFILLKGKIRIY
                     KSTASDKEITLHYFNPPNFIAEMPAFKKLNYPANAVFEEDGEILEIDFINFQNLCSEN
                     KEFNFLLISSLFDKIKILEKKLSQNALDLRTRLLKYLLENEKNLDTISQKQIAIDLNV
                     RAQSLSRVLKELKISELIDTKKGRIEILNKDMIMKELW"
     gene            24817..25200
                     /gene="ctb"
                     /locus_tag="SFZ04_000088"
     CDS             24817..25200
                     /gene="ctb"
                     /locus_tag="SFZ04_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HEG8064410.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
     gene            complement(25197..27020)
                     /gene="recG"
                     /locus_tag="SFZ04_000089"
     CDS             complement(25197..27020)
                     /gene="recG"
                     /locus_tag="SFZ04_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEG8064411.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKELIFNAKLS
                     HFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLVIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLSKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKAKKDLAKKLPN"
     gene            complement(27010..28230)
                     /locus_tag="SFZ04_000090"
     CDS             complement(27010..28230)
                     /locus_tag="SFZ04_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG8064412.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKILQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELSK
                     NIKDEILLRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETMNAYIKKHQ
                     ELLNISFASIQNEN"
     gene            complement(28230..29276)
                     /locus_tag="SFZ04_000091"
     CDS             complement(28230..29276)
                     /locus_tag="SFZ04_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HEG8064413.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDKEIIDHFE
                     YLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            29350..30537
                     /locus_tag="SFZ04_000092"
     CDS             29350..30537
                     /locus_tag="SFZ04_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8064414.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLARLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INNKNLFYMYLGQGFGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     AYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            complement(30553..31641)
                     /gene="nusA"
                     /locus_tag="SFZ04_000093"
     CDS             complement(30553..31641)
                     /gene="nusA"
                     /locus_tag="SFZ04_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEG8064415.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            31768..32010
                     /locus_tag="SFZ04_000094"
     CDS             31768..32010
                     /locus_tag="SFZ04_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064416.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            32007..33308
                     /gene="miaB"
                     /locus_tag="SFZ04_000095"
     CDS             32007..33308
                     /gene="miaB"
                     /locus_tag="SFZ04_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEG8064417.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDILEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            33292..33921
                     /locus_tag="SFZ04_000096"
     CDS             33292..33921
                     /locus_tag="SFZ04_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEG8064418.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
     gene            33923..34882
                     /locus_tag="SFZ04_000097"
     CDS             33923..34882
                     /locus_tag="SFZ04_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HEG8064419.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNIQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNNDTEVTLDNFNEALNNKF
                     DLLDQENNLETLNNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDINISAIDFLESETFLEIKTKQINTLDLMIELMQKELK"
     gene            34879..35406
                     /locus_tag="SFZ04_000098"
     CDS             34879..35406
                     /locus_tag="SFZ04_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064420.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            35396..35914
                     /locus_tag="SFZ04_000099"
     CDS             35396..35914
                     /locus_tag="SFZ04_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064421.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKSKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(35906..37198)
                     /gene="thiC"
                     /locus_tag="SFZ04_000100"
     CDS             complement(35906..37198)
                     /gene="thiC"
                     /locus_tag="SFZ04_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEG8064422.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQIGAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGVQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     regulatory      complement(37255..37359)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(37373..38143)
                     /locus_tag="SFZ04_000101"
     CDS             complement(37373..38143)
                     /locus_tag="SFZ04_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG8064423.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFILKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPENITELTGITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEILKYCLGKLPYHIKTTEELINFTKTATHKAKINI"
     gene            complement(38140..38787)
                     /gene="rpe"
                     /locus_tag="SFZ04_000102"
     CDS             complement(38140..38787)
                     /gene="rpe"
                     /locus_tag="SFZ04_000102"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEG8064424.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFIDLFIPLKPKFISFHVESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLVHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            38927..39121
                     /locus_tag="SFZ04_000103"
     CDS             38927..39121
                     /locus_tag="SFZ04_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEG8064425.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            39306..39521
                     /locus_tag="SFZ04_000104"
     CDS             39306..39521
                     /locus_tag="SFZ04_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HEG8064426.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            39531..40628
                     /locus_tag="SFZ04_000105"
     CDS             39531..40628
                     /locus_tag="SFZ04_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HEG8064427.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLRNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(40660..41256)
                     /locus_tag="SFZ04_000106"
     CDS             complement(40660..41256)
                     /locus_tag="SFZ04_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEG8064428.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFAEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(41339..43361)
                     /locus_tag="SFZ04_000107"
                     /pseudo
     CDS             complement(41339..43361)
                     /locus_tag="SFZ04_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862692.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
BASE COUNT        14332 a         8110 c         5753 g        15188 t
ORIGIN      
        1 taaaaatttg gggctaaacc aaaacaataa aaaagaattc ttgcaagata ataaagaaaa
       61 ttttgatgat ttggtaaaag ttttttttaa attaaaagta gaaattatct agtattaaaa
      121 aagcaattgc gttttaaaat agcctaaaag ctcttctttg gctttgaaga tatcatcagt
      181 gtttagctca aaatctattt tttgtggctt tttataactc ttatcataat aagccaaaag
      241 caaagcaata agcctttgcc attctctttg ctcataactt tttagcaaat cctgacgaaa
      301 atttacactg atataaggac tgatcttagc aagacattct ttaaatttta aaggagtcat
      361 tttttcttga tagatctttt gtatcctgtc tatgcgcttt tctaaagaac aaaaacaatg
      421 aattttaaat gctttttgca ttttttcata aagctttaaa ggtaaaacta tttcacctat
      481 tttacgactt tcgctctcta taaagataaa atcttttaaa gagtttaaag tataaaaaag
      541 gtttgcttca aaagcttttt gcgtaggttg ttttcctaaa atatcaccaa aagatgatcc
      601 tagatgattt gccatttttt ctaaatttaa atgatggggc aaaagctcca aaagttctgt
      661 ttttccacag cctgtattac cacaaagagc aaaaaaatct aaatttattt cattatcaaa
      721 ataatgcgcc aaaaaacttc tataagcttt aaagccaccc tttaaacgca ccactctata
      781 gcccaattcg ctcaaaatca ctgcaataga ttttgaacgc aaacccccac gagagcagta
      841 aattccgatc ttatctccta tacggaattt gtgggcaagc tctaagatat gctttgacat
      901 attttgacaa atataactcg cacccctagc cttagccaaa gcttgatttt ttttataaat
      961 tgttcctatt tcttgatatt cttcatcatt taaagcataa aaatttaaag ctcctatcaa
     1021 atgagaatgc aaaaattctc tagggcttct tgcatcgatt aaaagagaga aattttcttt
     1081 ttgaaattct gcaaaatcta cttcatttaa catttttaaa cgccaaaaca agtttttgat
     1141 aaacttgttc tatattggta ccacaaaccc tagtctctcc tatagtggtg ataaaattag
     1201 tatcccctac ccaacgcggc actaggtgat aatgacaatg aggagctatc ccagcacccg
     1261 catctttact taaattcata ccgatattta ccccacctgc atggagttca ctttttaaaa
     1321 ttcttactcc tagacgcaca aattgactta tctcttgcca agcttcatca cttaaatttt
     1381 ctatatgctc ttcatgcaaa taaggtatta tcataaaatg ccctgcagaa taaggatagc
     1441 ggttcatcac gccaaaacaa tacttagctc taaaaatcac tcctaattct tcgtcgcttt
     1501 tgattttatt agcacaatca caaaaagggc actcgctctt ttctttttca aaatactcac
     1561 ttcgccatgg tgcatacaaa tactgcattt ttatcctttt aaagcaaggc tttcaaagcc
     1621 tctccttcat cgttttgacg cataaaatat tctccgatta aaaaagcatc aacgcctaaa
     1681 ttttgcaaat gccttaaaaa atctttatcc tctaaaccgc tttctgcgat aataattttt
     1741 gaatttggaa tttgtgggat gagtttttcg cataaattca tatccataga aaaatcatcc
     1801 aaattgcgat gatttatgcc tataatatca gctcctgaaa aaatcgcttt gctcaaatct
     1861 tctttatcgt gaatttcaac caaagcctca agacctaaat gtcttgcaaa ctcaagcagt
     1921 tttttaagct ctttcatgct tagcatttta gcgattaata atacaaaatc cgccccataa
     1981 accaaagctt ctaaaatttg atactcatca aaaataaaat cctttcgcaa caaaggagtg
     2041 tgcgtataac ggcgtatcat gctaaggtat tctaaactcc cttgaaaaaa atgcggttct
     2101 gttaaaactg aaatagcagc agctccattt ttttcgtatt ttaaagctat atctaaagga
     2161 tcaaaatttt cccttataac ccctttactt ggactagctt ttttaacctc tgcgataatt
     2221 cttacttcat tttctattct ttttaaagca gctttaacat ctttaggaaa aaaaggattc
     2281 gacgctaaag atcgtcccaa catatcataa ggcagttgcg ccttacgctc ttttaaatct
     2341 tctttagttt tttcaaaaat tttatctaaa atcatggttt aatacacgcc tttattgctt
     2401 ttgcatgagc cttgctctca tcagaatttg caaattcttt atcctctaaa gtttgcttca
     2461 aaatttccca agccttttta caatcacctt gtttataata cccccacgct aaagaatcca
     2521 aatagtataa attttgaggc tcttttttta aggcaagttt cacaagctct ataccttttt
     2581 taacatctaa atcataatct ataagcaaat atccatagta gtttaaatac aaagcattgc
     2641 tatctttatc gatagcctgt tcgaattttt cttttacaga atcaattact tttggagtga
     2701 tttttttagc ttcatttgca gcttcaaatt caaaaactgc cgctcgtaga agatattctt
     2761 tattttttgt tttatgataa agagctaaac tcattttttt agcatcatca aagcgtttta
     2821 aattctgata caaagcgagt ttaatgtcat catctaaatc atactgcaaa gaaattttta
     2881 aagcttcttc tgttttgcct tgagaattta aaagctcaac taaagccaat acaaaacttt
     2941 tatttttggt aagttgataa agctctttat atatactttt taaagcttcg atattttttt
     3001 catcaaaata aattttagca agcaagacgc aagttttgag agtgcaacca ttggtttttc
     3061 ttgaaaattc taaaacattt ttaatattta aagtatcatt caaaatcgca taaattccta
     3121 tgagtttaaa taaaatttct tcattttgca cttgattata agcagatcta tagtattttg
     3181 tagcattttt taaatcattt tttttaacca aaatatcacc ataaagctct aaatttctag
     3241 gatcactatc cttttttgtt aaaagctctt tcataagttt ttgagcattg ttgatatcat
     3301 ttgaatttaa agcataaaga gcactaagtc gcttaagatt gtcattttga tttaaataag
     3361 gctttgctag attatctaac tctgcttgct tgtcaagatt gtttgctaaa gtaagtaaaa
     3421 atgcattttc taaaaaatta gtattattat aatcttgata aagacttaaa aattcatctc
     3481 tggcttcttt gtattgttta taatactcat aattataagc cttcataacc cttaaatcaa
     3541 aatcattgct tttatatttt gtataatcag gataaacaac attgattttt gaacttccac
     3601 aagctgccaa aaaaaaggct actaagacaa ataacaaata cctatacatt ctttttctaa
     3661 ttccttttga tgtgttttaa aatattccca aaatggaaaa gttctgcatt gttttggacg
     3721 aaaatcgtag atactacaat ttcttttttg agtatcaaaa aaaatgcaag caaaaccatc
     3781 ttcacattcg acttccttaa aactcatttt aaagcccact tttctcaagt atttttcagc
     3841 aaattctttg ctttctaaat ttaaatgctt tcttaatgct tctaattctt ccttgctcgc
     3901 aaaaatattg ccactttctc cagtgcaaca ctttccaccg catttctcac aagcattttc
     3961 atcaaaagca taagaaaaat ttttatcaaa tatcataact ttttaaccta aatcttaagt
     4021 gaatttcttg catttgtttg cttaaaattt cattttcata tacaaaaaaa ggaggtaaaa
     4081 tctcacaagg cgattttgaa ccttttttta cctgtatcaa aacaagtctt gcttttttgt
     4141 tttgatgtgt atgtacaaag caaagctttg ttattttcat tttcatatct tttaaaataa
     4201 aacaaatttc atctaaagct aaagcttcat agcaaaaata caaagcacca tttggcttaa
     4261 gcatagaatt tgttttagct aaaaagctat gcaagggtaa aaattcctga aatttactta
     4321 tagctttatg ctgatcttca ctcttgtaag ctccttgtct ataaaatgga ggattgcaga
     4381 ctatgaagtc aaattttttt atgatttgaa attgattaaa atcatcatga aaaatatcgc
     4441 cttgtatttt gttggatttt aaattttttt caatcaattt tatattttct ttttgaatat
     4501 caatcaaaga taaacttaaa tttgcaatat tttttttaag taaaatacct atgataccac
     4561 agcccgcacc tacatcaaaa acagcgcctt taattccttg ttttaaaata aaatcagcta
     4621 aaattaaaga atcactattg taacgatacc cttgtgataa ttgtgctagc gtaatcagat
     4681 ctgacatata ttttaatgcg ttggaatttt aatgcgtttt ggagattgtt ctttaaatat
     4741 atttcgttct tttgttatat tattatcttc tttaaaattt actgggcttt gtgctgccaa
     4801 aaaagaaatt acaaaagtta taaaaaaagc aatttttatc ataataacac cccataaaat
     4861 ggtgtccacg gcgagattcg aactcacggc ctcaaaatta ggaattttgc gctctatcct
     4921 gctgagctac gaggacagaa agcgggaaaa atcccgctaa aaatttaacc gtttcttttt
     4981 ttgatgattt catccgcaac atttttagga acttcatcat agtgatcaaa ttccatagaa
     5041 taagtcgcac gaccttgagt ttgacttcta agatcagtag aataaccaaa catttcagcc
     5101 aaaggacaaa atgctgtgat gattttattt ccaccacgct catccatgct atttacttga
     5161 ccacggcgtt tgttaagatc tccaataaca tcacccatgt aatcttcagg agtttctact
     5221 tcaactttca tcataggctc taagatcaca gcacctgctt ttctagcacc ttctttaaag
     5281 cccatagaag cagcaagttt aaacgccatc tcagatgaat ccacctcgtg ataacttcca
     5341 tcataaacag ttactttaac atcttccaca ggataacctg ctaaaacacc attttgtaat
     5401 gcttcttgaa cacctttatc aactgcagga atgtattctt ttggaattac tccacctttg
     5461 atatcattaa caaattcata tccactacct ggctcaagtg gttcaaggcg taagaataca
     5521 tgtccatact gaccacgacc acctgattgt ttagcatatt tgtattcttg ttcaacagtt
     5581 tttctaatag tttcgcgata agcaacttgt ggttgaccta cttcagcttc aactttaaat
     5641 tcacgaagca ttctatcaac gataatttca aggtgtaact cacccatacc tgaaatgata
     5701 gtttggccac tttcttcatc agttgaaact ctaaaacttg gatcttcttg tgctaattta
     5761 tttaaagcaa tagacatttt ttcttgatca gctttagttt ttggctcaac tgcaacagaa
     5821 ataacgggat ctggaaaatc cattctttca aggattacct tatctttttc acttgcaaga
     5881 gtatcccctg ttaaagtatc tttaagtcct acaacagcac caatttcgcc tgcgtaaagc
     5941 actttaatct cttctctttt attagagtgc atttttaaca aacgaccaat tctttctttt
     6001 ttatctttag ttgagttata agcataagag ccactttcca aacaaccacg ataaacacgc
     6061 acgaaagtaa gttgtcctac aaatggatct gtcatgattt taaatgcaag ccctgcaaac
     6121 tcgccatcat cagttgattt tacagaaact tctgtaccat cttcatattc acccttgata
     6181 tttgccactt catcaggagc tggcaaataa gccacaacag catcaagtaa aggttgaacc
     6241 cctttatttt taaacgctgt accgcaaagc ataggaacga tagaaagact taaacatcct
     6301 gctttaatcc ctgttttaat ctcttcaaga cttaattctt ctccgcctaa atatttttcc
     6361 atcaactcat ctgaagtttc agaaactgct tctatcattt ttgtgcgata ttcttctgcc
     6421 ttttctttaa gttcagctgg aatttctttt tctacataat ccgttggctt agtatcatct
     6481 tcccaaacta aagctttcat agttacaaga tcgattacgc ctttaaaatt atcctcagca
     6541 ccgattggaa tttgaagtgg aactggatta gcttttaaac ggttgcgaat ttgatcttct
     6601 acattataaa aatttgcacc gattctatcc attttgttta caaatactat tcttggaaca
     6661 ccatatttat ttgcttgtct ccaaactgtt tcactttgag gctgcacccc acccactgaa
     6721 caaaataccg caacagcacc atcaagaaca cgcatagatc tttcaacttc gattgtaaaa
     6781 tccacgtggc ctggagtgtc aataagattg atttgatgat ctttccaaaa acaagttgta
     6841 gccgcagaag tgatagtaat cccacgctct ttctcttgct ccatccagtc catagttgca
     6901 gcaccatcat gaacttcacc gattttatga ctcataccag taaagaaaag aattctttca
     6961 gatgtagtcg ttttacccgc atcaatgtga gcagcaatac cgatatttct aacttttttt
     7021 aaaggagtat ttcttgacat acacactcct tccttaccaa cgatagtgag caaatgcttt
     7081 atttgcttca gccattttat aagtatcttc tttcttctta aatgaagcac ctttgctatt
     7141 agcagcatcc aaaagctcag ctgcaagttt atcaatcata gttctttcgc ttctttttct
     7201 tgcaaaagaa ataatccaac gaatcgccaa agcttgttgt ctagcagggc gtacttcaac
     7261 tggaacttga taggtcgcac cacctacacg acgagatttt acctctaata aaggcttaat
     7321 attttcaatc gcatcattaa aaatatcaat accttttttc tcgccacctt ttttatcgat
     7381 agcttctaaa gcaccataca taattgttgt agctgtgctt tttttgccat catacattaa
     7441 agaattaata aattttgtga ttactttatt accataaatc ggatcaggta aaacttctct
     7501 taccggagct tttcttcttc tcattatttt tccttcaaat tttaaatttt actcaaacaa
     7561 aatcaaatct aacggatttg tctgtatgaa gattattttg cagcgcctgc tttagggcgt
     7621 ttagcaccat atttagaacg agaaactgtt ctttttgcaa cacctgctgt atcaagagca
     7681 ccacgaacga tgtgatattt aacccctggt aagtctttta ccctaccacc acgcactaaa
     7741 acaatgctgt gttcttgtaa gttatgacct tcaccgccaa tatagctgat cacttcaaag
     7801 ccactagtaa gtcttacttt ggcaactttt cttaacgctg agtttggttt tttaggtgtt
     7861 gtagtataaa ccctagtgca aactcccctt ctttgtggac aatttttaag cgctggagat
     7921 ttagattttt ctaaaacttt tttgcgctct tttctaacca attgatttat ggtaggcaca
     7981 ataattcctt tctttaaaaa tgtaataaac tttggatgat atctaatttt tgcttatatt
     8041 ttagttaaaa agattgaaaa tgaggaaata tagccccgaa gggctataaa atagagtttt
     8101 attcttgttc tttaagtttt aaattttgtt cgccataaag ccctgttcca acaggaatca
     8161 ttctacctag aataacattt tcttttaaat cttctaagta gtcaaattta cctgctatac
     8221 ttgcttcagt taaaactttg gtagtttctt ggaatgaagc cgcagaaatc acactatcac
     8281 ttccaatcgc tgctcttgtt acacctaaaa gcacaggctc ggcaatagct ggttctccac
     8341 ccattctaat gattctttca ttttcttcac ggaatttacg tcttgaaacc aaatcacctt
     8401 caataaattt cgtatgtcca ctatctacaa cttttacttg tcttagcatt tgagaaacga
     8461 taacttctat atgtttatca gaaatcacaa caccttgtcc gcgataaact tgctgaattt
     8521 cagaaatcaa ataataatgc aaggcttttt cacctaaaat tttaagcaca tcatgactcg
     8581 aaacaactcc atctgtaagt ttttcacctg catgaataaa ctctccatct cttacttgaa
     8641 tatgttttga tttgtcgatt aaatactcag cacttgttcc atcttctgct tggataataa
     8701 ttctttcttt agaacgcaaa ggcttatcaa aacgaacaac accatcaatt tctgcaatca
     8761 cagccgcatt ttttggtttt cttgcttcaa aaagttcaga aactcttgga agacctcctg
     8821 taatatcctt tgatttagct gctgcttttg gagtttttgc taaaatatct gcttgagcaa
     8881 ttttatcgcc atcatgaaca aaaataacgg tttttggttc aaggtgataa cgcacagctt
     8941 tatcaccttt tcctgcaatt accaaagttg gtctaactcc gctaggtaaa tactcattaa
     9001 ttactaaaga acgcttacct gtagcttcat caatttgctc atcagcacta taacctgctt
     9061 caatatcctc aaagcttaca acaccatcaa tttctgcaat gatagtatta ttataagcat
     9121 cccattctgc aatcactttt ctttcttttt taggagcact tgcaatgata gtatttgcgt
     9181 catcgatttt ttcactatcg ttaaattcta tcttagattc tcttgggata tagtgtcttt
     9241 ttgcttctct atcattttca tcagcaatca ctacaaagaa tcctttttct ttaacaatat
     9301 cacctttttt aacatttttt actctatcta aaccatcgcc tttaaggatg taaaatttga
     9361 gcgttccttt ttcgcctgct ttgatatttt gaactatagg ctcgccatct tctactaaaa
     9421 tttcactcgc aaaaggaata cgatttggta cattccaacc ctctttaatc acttctacga
     9481 tactttcatt ttcttctact tgcatgccgc tttgatatgg caaataaagt tttccatcta
     9541 tactgccact tacacctgct aattcatttg gtttagcaag atcgtatttt cttagtatgt
     9601 attttacttc ttgtttttta tctttaatag aaacaatcac atcttcatga atattttcta
     9661 tattaatcac acctttaaat ggagttttga tttttggctc cacaagtaaa accgccgcat
     9721 ttctacgatt tgctacgata tttttacctt gtttgttttt ataagtttta agattataaa
     9781 atcttataaa accttctttt tgtgcgctta cttgtctatc ttgtaaatcc gtacttgcag
     9841 ttcccccgct atggaaagtt cttagagtta gctgcgttcc tggttcaccg atagattgag
     9901 cggaaataat tcccactgct tcgcctggtt ttactaattt accttcacca agattgatac
     9961 cataacattt tgcacaaatt ccttttttag ctttgcaggt gataggagtg cggatattga
    10021 cactttttat accgctttcg ccaagaattt ttgctttttc ctcatccatt aaagtacctt
    10081 ctgcaaaaag cacagaattt gtaataggat caatcacatc ctcagctaaa accctgccta
    10141 aaattctttc ttctaaagtt tctataatag aactatctgc ggtaatttca ttgatttcaa
    10201 caccctcatg tgttccacaa tcttcaatgg taatttttac attttgtgca acatcgatga
    10261 gttttcttgt caaataaccc gcatttgctg ttttaagagc ggtatctgca agaccttttc
    10321 tagcaccgtg agttgaaata aagtattcaa gaacatttag cccttcacgg aaatttgaaa
    10381 taataggcgt ttcgataata gaaccatcag gtttggtcat aagtcctctc atcgcagcaa
    10441 gctgagaaat ttgagctgca ctacccctag caccagaatc tgccatcata taaatagagt
    10501 taaaaccttc tttatctttt tctacaagct tcatcatttc ttttgaaaga acattgtttg
    10561 tacttttcca aatatcaatg attttattgt atctttcccc tgaagtaatc aaaccgagat
    10621 tataagaatt ttgaatttct cttacttgtt tttttgcttc atcgatagct ttttgtttat
    10681 cattaggaac aataatatct gcaatcgaaa ttgaaatacc tgctttagtt gcatattcaa
    10741 aacctaaatt tttaagtcta tccaagaaac ttgctgtaat ctctaaacca ccttgtttat
    10801 aaacataatc cacaagcgca gcaatgtctt ttttctttaa gactttattc cagctatttt
    10861 caggcacaaa atcaggtaaa atggatttaa taatcaatct tcctgctgta gtggtaatct
    10921 ttctaccatc taccatagtt tgtatgctcg catgaatatc caaacacttg ctttcaagtg
    10981 ccatcatcac ttcatcaatg cctgtacaaa ttttatgcga acctttagca cctgcttttt
    11041 ccaacgaaag ataataaatt cctaaaacca tatcttgcga tggaacggtt acagacttac
    11101 cgcttgctgg taaaagaata ttcattgatg aaagcataag cactttacat tctgcaatag
    11161 cctcttgaga aagcggtaca tgcactgcca tttgatcccc atcaaagtct gcgttaaatg
    11221 ctgcacaaac caaaggatga agttgtatag ccttaccttc cactaaaaca ggatgaaaag
    11281 cttggataga aagcttatgc aaagtaggtg cacggtttag cataacagga tgtcccttta
    11341 ctacctcttc taaacattcc caaacttcat tggttttgtt ttctatcatt tttttagctt
    11401 gttttactgt ggttgcataa cctttttctt caagcttagc taaaagatgt ggcttaaaga
    11461 gctctaaagc cattttttta ggtaaaccac attgatccat tctaagtttt ggacctacaa
    11521 caataacact acgacctgag aaatccaccc ttttacctag tagattttgt ctaaaacgtc
    11581 cttgtttccc tttgatgatt tcacttaaag attttaatgg gcgtttattt gctcctttta
    11641 cagcattagc acgacgaccg ttgtcaaaaa gtgcatcaac agcctcttga agcattcttt
    11701 tttcatttct gataatgatt tcaggtgcat caagttccat aagtttttta agacgtgtat
    11761 ttctattgat aacacgacga tataagtcat tcacatcaga aactgcaaat tttccaccat
    11821 ctaaagccac taaaggacgc aaatctggcg gtaaaactgg aagatttgta atcatcatcc
    11881 attcaggacg atttggtacg gcttcatcac tatcggtatt ggcgtttaaa tttgaattta
    11941 agaaattttc tactactttt aagcgtttaa tgatggtttt tttcttagcc tctgaatttg
    12001 tagccgccat ttcttcttta agctgattta aaagtgccac aagatctaaa tttgcaagta
    12061 aatcacgaac aacttctcca cccattcttg ctttaaagcc actattttca tagcgttgca
    12121 ttaaattttg atattgctct tcgtttaaaa catcacaata ttctactttt ttggtgcttt
    12181 cattatcata gaaagcatcg cctggatttt caacgatata agcttcataa taaagcacac
    12241 gctcaagatc tttcatctta acacccaaaa gcgttcctat acggcttgga agagaattaa
    12301 cataccaaat atgagccaca ggagttacaa gctcgatatg ccccattcta gaacgacgca
    12361 cttttgaatt tgctacttca acaccacatt tttcacactt aacgccttta aaacgcattt
    12421 ttttgtattt accacaaaga cactcataat ctcttatagg tccaaaaatc tttgcacaaa
    12481 aaagcccatc tctttcaggc tttaaggttc tataattaat agtttctggt ttttttactt
    12541 ctccataaga ccatgatttg attttttcag gacttgcaag tctcagttga aatgcttcaa
    12601 aatctctagg tcttgcatct tctttaattt ctattacttt aaatttactc attatcttca
    12661 tccttatcaa aaatctcaac atctaaagca agagatttaa gctcattggt taatataaaa
    12721 aatgtttcag gaattcctgt tgctggaaca ttttcacctt ttgtcaatgc tttataagca
    12781 ctaaatctac cttctacatc atctgatttt atggttaaca tttctcttaa agtgtgagcc
    12841 gctccataag cttcaagtgc ccaaacttcc atttctccaa atctttgtcc cccaaagagt
    12901 gctttaccac ccacaggttg ttgggtaacc aagctataag gtcctgtact tcttgcatga
    12961 actttttcat caaccaagtg atggagtttt agcatataca tacatcctac atgaacacgc
    13021 tctgcaattt tttcccccgt gcgtccatca taaagttctg ttttgccatc catatctatc
    13081 ttagccattt taaaaagctt gctaaattct tctatattta caccttcaaa aacaggagta
    13141 gaaaatttaa ctcctttact ccagtctcta gcatagttta aaagctcttc atcgcttaag
    13201 cttttaataa attctttttc gtttgcaagt cttggaatag aacaaatttc aagcattttc
    13261 gctcttaatt ctttaagaaa atctttttgc tttctatcaa aaatttcttg aatttgatcc
    13321 ccaagtctaa gtccaactaa acctaaatga ctttctaaaa tttgacctat attcatacga
    13381 cttggaacgc caagtggatt aagcgcaata tccacactct taccatttgg caaataaggc
    13441 atatctactt caggaactat agttgaaact atacctttat ttccatgacg tcctgccatt
    13501 ttatcaccga ctttaagctt tctttttgta gcaatataaa ctttaacaag cttaattacc
    13561 ccacttggta aaatatcatc tttttctaaa atttcaagct tttcatcgtg ttctgctttt
    13621 aattttttct tctcattttg gaaatgattt tttaaatcat cgtattcttt ttgaatctct
    13681 ttagaataag ctttaatcaa agttgttaaa gtaaaacgat tgattttttc aagttcgcta
    13741 atatctgcag tttgtccttt tttataattt ttatctccaa ttttttgatc gctatttaaa
    13801 gaagctttgg aaagaagagc acaaacacga agcatttctt ctctatccat catcaaaagt
    13861 ctatcatgat gctctttttc taaagccatt ttttctttat cataagattt tattgcgcga
    13921 tcatcttttt catagccttt tttagtgaaa attttaacat ccacaacaac accctctaaa
    13981 gaagcggttg cataaaggga tttattcaca acatgtcctg ctttttctcc aaaaatcgct
    14041 cttaaaagtc tttcttcagg agttggttta acctcacctt ttggagaaac cttacccacc
    14101 aaaatcatac ctggtttgat atgggtacca atttttgcaa taccgctctc atcaagatgc
    14161 gcaacatctt cttcttttac atttggaata tctttggtaa tttcttctat accgtctttt
    14221 agttctcttg cttcaatttc tttttcataa atgtgcacgc ttgtaaaagt atcttcacga
    14281 ataattctct cacttacaac tatagcatcc tcatagttat aaccattcca aggcataaaa
    14341 gcgattaaag catttttacc tatagcaagt tcgccttgat ccatagaagg accatctgcg
    14401 ataatttgtc ctgcttttac tatatcacct tttttaacaa tagggtgttg aatataattt
    14461 gtattttgat tggttcttaa atttttctcc atagtgtaat ggtcaataaa tggaccttta
    14521 tcatcttcac ctaaaatgaa aatgctttta ttatccactt tctcaaccac accgccacgc
    14581 tttgctttaa cagcttccca agcatcacgc gcaataattt gttccatacc tgttcctact
    14641 atcggagctg aagcagtaag aagtggcaca gcttgacgtt gcatgtttga acccattagc
    14701 gctctgtttg catcatcgtg ctctaaaaac ggaatcaaag aagctgcaac tccaacaacc
    14761 atacctgagc aaagatcgat taattgcact tcttcgcgtc ttgcaagtat agtttcacca
    14821 tcttgcctag cctcaacaaa ttcttctact atattgcctt tagcatcaac cttagttgaa
    14881 gctggtgcga taaacaagcc ttcttcttgt gtcgctgtaa gataaacaac ttcattagtc
    14941 actttaccat ttacaacttt tctatatggc gcttcaacaa agccaagttc atttactttt
    15001 gcataagtag aaagagtgtt aatcaaacca atattttgac cttcaggtgt ttcaactgga
    15061 caaattctac cataatgtgt cgcgtgaaca tcacgcactt caaaacctgc tctttctttt
    15121 acaagtccac cttcaccaag cgctgacaaa cgacgcttat gagtaacctc gcttaaaggg
    15181 ttggtttgat ccataaattg cgaaagttga cctcctgtaa aaaattcaat gatagttgta
    15241 gtaatcattt taggattgat taaatcataa ggcattactt tatcaagatc cgcatttaaa
    15301 gaagtaaatt tatctctgat cgccttttgc atttttgcaa gacctaaatg aagttcattg
    15361 gctaaaagtt cacctataga acggatacga cgatttccta aatgatctct atcatcaata
    15421 tgtcctttac cattttttac tttaattaaa tattttgcag ttttaataat atcttcatta
    15481 gtcaaaacag taacatactc aggtacttca agacctaatt tatggttcat tttcatacga
    15541 cccaccttgg taagatcgta tctttcagga ttgaagaata aatcatttac aaaagccttc
    15601 gctgcatctt ttaccacagg ttcacctggg cgcataactt tgtaaattct aatcgcagct
    15661 aaatcatttt catcatcgat attttcactt tgtttaagaa gttttagagt ttctccatct
    15721 tgagcaaagg agttaataat cgctgcatca acgccattag ccaagtcatt tgctatatca
    15781 aaactttttt gctctttaat cttagcaagc ttactctcat ctaacaaagt taaagaatca
    15841 aataaaacct ctccactttc tttatcaata ataggatttg ctaaataacg attaagtaaa
    15901 atttctacag gatattctat ccattttaaa ccgtctttaa taagctgttc tgcttttttc
    15961 tttgtaagtc tttttccagc ttgatgaacg atttttcctt tttcatcttt aatatcatat
    16021 tctattctat ccataaaatc atttggatta aattctgtta aaaatttatc ttttttcaca
    16081 tgtatagtct gaataggata aaacaactta ataatatctt gttttttata ccctaaagct
    16141 ctaaaaagca tagttacagg aacttttcta cgcttattga ttcttacata caaaacatct
    16201 ttggcatcgt attcaaaata aagccacgaa ccacgatcag gaataatttg tgctgtataa
    16261 acaagcttat ttgcaaccgt tgaactttct tcttctttaa aaataacacc agggcttcta
    16321 tgtaattgat ttacaaccac cctctcaacc ccattaatga taaaagatac acgatctgtc
    16381 attaaaggaa tttcgcggat ataaatttct tgttctttaa tatcttttac gccaactttt
    16441 tcccctgttt tttcatcttt ttcatgcaga gtaagacgga ttttcatttt taaatttaca
    16501 gaataagtca aacctctttc catgcattcg cgaatggtat attttggctt gcctatttca
    16561 ctactaacat attcaagact caatctattt tgcggatcat gaataggaaa aattgattta
    16621 aaaacttttt ctataccact ttcaccatta tcaagattta aaaaataatc aaaactcttt
    16681 ttttgtaatt gtagaagatt tgggatttct atttgttttg aaatgtttga gaagtctact
    16741 cttaaacgat ttcctaattt attatctaac atatcgcaca tacctcatgg taaattttgt
    16801 aaatttaaaa aagaagacct aaaaattagg taaaaataaa aaaagaagac ttgccttggc
    16861 aaatcttctt ctaactttaa agcttaaaat tacttaagtt ctactttagc accagcttct
    16921 tcaagttgtt ttttagcttc ctcagcttca gctttagcca caccctcttt tagagttgaa
    16981 ggagtttgct caactgcatc ttttgcttct ttaagaccaa ggcctgtaag agcacgaacg
    17041 attttaataa cttcaatctt tttagcaccg ccatcagtta aaacgatatc aaattcagtt
    17101 ttttcttcag cagcagctgc agcaccacca gctgcagcac caccagctat cattacagga
    17161 gcagcagaca caccaaattt ttcttcaaac tcttttacaa gttctgataa ctcaagaaca
    17221 cttaaatttg aaatatattc taatacatct tctttagaga ttgccatttt ttatcctttt
    17281 atttaattta ttcagattct tttttatttt taagcgcatt taaacctatt gtgaaattgg
    17341 taattggcgc attccaaact tgcaaaagca tagcaagcaa ctcattgcgt gaaggcattt
    17401 tagcaagagc tttaacctta gcaacatctg caacttcgcc ttcaatatga gctgttttga
    17461 tttcaaattt atcgttattt tcttcaaatt tagcagctac ttttgaaaca cctagctgat
    17521 cttcgcccca aagataaata tttgtatctt taagaactag acctgtttta ccggaattgt
    17581 taagagcaat gttagccaaa gtatttttaa caatttgaac ttttacattg ttttctcttg
    17641 cattatttct aagctcttct agtttttttg tgctaagacc tctgtaatta caaactacaa
    17701 tagcttcact agctttaaaa ccttcttcaa gtttagcaat aatctcaact ttttcgcttc
    17761 tagtcacatt ttctcctttc cgattgagat ttcaagtaga gtggaaatcc aattaagctt
    17821 acgcctcgac tatcttcaat ctaaaataaa catctcaaaa aatcaaaaat tttttcaaat
    17881 gtttatttta aaacaaaaga gttgcaaaaa agcaactctt atttcatatc aagcaattct
    17941 tgtgtttcaa gctttacaga agggctcatt gtcaaagata aagccgcatt tttaatatat
    18001 ctacctttag ctgcagcagg tttatgtttg ttaattgcct ttacaaaagt gctaacattg
    18061 tcccataatt gttctttgga aaaacttact ttaccaagac ctgcatggat atttccttgc
    18121 ttatcaacac ggaaatttac ctgaccactt tttgcattat taactgcttg agcaacatcc
    18181 atagtcactg ttccagtttt aggatttggc attaaacctt ttggccctaa aattctacca
    18241 actttaccaa caagtcccat taaatttgga gtagcaatca aaacatcaaa attcatatta
    18301 cctttttgaa tttcttctac taaatcatcg ctacccacaa tatctgcacc agcatttttc
    18361 gcttcatcag cttttgcgtc ttttgcaatt acagcaacac gaactttttt acccgttcca
    18421 gcaggtaaaa caacagatcc tcttaccatt tgatctgcat gtcttggatc aacattgagt
    18481 tttaaagcaa tttctacagt ctcatcaaat ttagcagact ttaaagtctt tattgtatca
    18541 attgcatcgc ttaaagcata ctctttattt gaatcaattt tttgtgataa ttcttttaat
    18601 ctttttgcta tcttagccat ttattttctc cgcattttaa agtgctaccg ccttttacct
    18661 tggcggtgaa aggattaatc tacgatttca acacccatag aacgagctga acctgcaata
    18721 attttagcag cttgatctct atctttagta tttaaatctg caattttctt atctactatt
    18781 tctaaaactt gagcacgagt taacttaccc accttatttt taagtggatt atccgtacct
    18841 ttagaaattc cagctgcttt tttgatcaaa tccgtagctg gcggttgttt tgtaataaaa
    18901 gtaaaacttt tatctgcata aacagtgata acaacaggga tattaaaacc tgccatatct
    18961 tttgttcttt cattaaaagc cttacaaaac tccataatat taacaccttg ctgacccaaa
    19021 gcaggaccaa caggtggtga tgggtttgct tttgtggcag caatttgcaa tttaatttcg
    19081 cctacgactt ttttagccat aacaaatctc cttacttgat ataaattaaa ttattttctc
    19141 aacttgagaa tataagatct ccactggagt tgaacgtcca aaaatagaaa catttaattt
    19201 taataaacca cgaaccatat catactcttc tacaattgca gtaaagtttg caaatggccc
    19261 ttctgtgatt ctcacatttt ccccttcttc aaaagaaatc tttggtttag gcgctgcacg
    19321 attgtgaact ttttccaaaa tcaaattaat atctttttct gttaaagggg ttggcttttt
    19381 ggattctcca ataaaacgac caacctttgg aagagattga atgcgatgcc aaagctctgt
    19441 atttaaatca agaagtgcaa aaacgtatcc tgaatacaaa cttctttcgc taatcttctc
    19501 ctttccattc ttaaattcaa taacatcttc agttggaaca acaatttctt taagttgttc
    19561 ttcaattccg ttatctttta ctaaattttc aatggctctt ttaactgcca tttcactgcc
    19621 agcataagtt tgaattgcat accatttatg agtactcatt tactctcctt atacgatcgc
    19681 agaaacaata gaggacataa gccaatccac taacgccaaa aacaaagaaa tcaccacaac
    19741 aaccacaaaa actgtaatat aggcatttct tacctgttct tttaaaggaa aaattacttt
    19801 ccttaattcg gcttttgata atttaaaata agttattaat ttttccattt atttaaacct
    19861 taattatggc agggcaagag ggattcgaac ccccaaccat cggatttgga atccggcgct
    19921 ctaccgttgg agctattgcc ctaagggcgc aagcttaact ttttaactta acttctttgt
    19981 gaagtgtatg tttttttaat cttgggcaat atttttttaa ttctaatttt tcagtagtat
    20041 ttttactatt tttataggtg ctataattaa tatcaccaca ttcttcacac tttaaaccaa
    20101 ctttaattct catttcaatt ttccttaaaa aattaaagcc aagcttttaa cttggcttta
    20161 ttaaattatt taataatttt agaaacaaca cctgaaccaa cagttttacc accttcacga
    20221 atagcaaaac gagttccttc ttcaagtgct actggagcga tcaagcttac agtaattctc
    20281 acattttcac ctggcataac catttcaaca ccatcagcta atttaatcga acctgtaaca
    20341 tcagttgttc ttacataaaa ctgtggtcta tagttgttaa agaatggagt atgtctacca
    20401 ccttcatctt tatttaagat ataaacttca gcttcgaagt cagtgtgtgg agtaattgat
    20461 tttggtttag caagaaccat accacggata acttcttctt ttttagtacc acgaagaaga
    20521 acacctacat tatctcctgc ttcgccttga tccatttctt ttctgaacat ttcaacacct
    20581 gttacagttg ttgtttgagt atctttaata ccaacgattt cgatagtatc acctactttt
    20641 acaacacctt tttcaattct acctgtaaca acagtaccac gacctgaaat tgagaaaacg
    20701 tcttcaattg gcatcaagaa gtctttttca gtatcacgag ttggagttgg aatatagcta
    20761 tcaactgcag ccataagatc cataattttt gctgaccatt caccatcttg tccagcttta
    20821 gcttcttcaa gagcttttaa agcagaacca gaaataatag gtgtatcatc gcctgggaaa
    20881 tcataagagc ttaataattc tctaatttcc atttcaacta actctaaaag ttcagcatca
    20941 tcaaccatat ctgctttatt cataaaaaca acaatatatg gaacgcctac ttgacgagaa
    21001 agaagaatgt gctctctagt ttgtggcata gggccatctg cagcagaaac aaccaagatc
    21061 gctccatcca tttgtgcagc acctgtaatc atgtttttaa cataatctgc gtgacctggg
    21121 cagtcaacgt gtgcatagtg acgattgtct gtttcatatt caatatgaga agtagcaata
    21181 gtaataccac gctctttttc ttctggagca ttatcgatat tatcataatc tttaagctct
    21241 gctaaacctc ttctagaaag aacagcagaa atagcagctg ttaaagtagt tttaccatgg
    21301 tcaacgtgac caatagtacc aatatttacg tgtggcttat tacgtgaaaa tttttcttta
    21361 gccatttttt tcctccgtat aaaaaataaa ttgagcaaag caagtcttat atctatataa
    21421 ttttttcaat tcatggagct catagcggga attgaacccg cgacctctcc cttaccaagg
    21481 gagtgctcta cctctgagcc atacgagcgc tcagaaaaat tatacacaat aacagacaac
    21541 aaaaactctt aaatgggata tatactgtaa gttaaaggtt ttaaaataca gctcccagtt
    21601 cttttaaatt attggagcgg gaaacgggac tcgaacccgc gaccctcagc ttggaaggct
    21661 gatgctctag ccaactgagc tactcccgca aagcatggtg gtgagtcgtg gattcgaacc
    21721 acggaaggcg aaagccagca gatttacagt ctgccctcgt tggccacttg agtaactcac
    21781 cataaaaata ttgctttttc aatattctgg tcaaacactg ctaaaataaa tggagctggt
    21841 taagggactt gaacccccga cctgctgctt acaaggcagc tgctctacca actgagctaa
    21901 accagcaaaa ataaaagtaa gattataact caaaaaaaaa attttgtcaa gactttttta
    21961 gtttttctat aaaattttag tcttgtaaat tttattatca taaaccaata ttatttttat
    22021 ctatttatga taatcaaata aatttaaaaa tttctttgct ctttcgcttt ttggattttt
    22081 aaaaaaactt ttaggatcat tttcttcgat gatttttcct ttatccataa aaataatttt
    22141 atctgctaca gctttagcaa aacccatttc atgagtaaca ataagcatag tcataccctc
    22201 ttttgcaaga tttaacatca cttctaaaac ttctctgaca atctcaggat ccagcgctgc
    22261 tgtaacctca tcaaaaagca ttaactcagg attcatgcat aaacttctta ctatggcaat
    22321 tctttgcttt tgtcctccgc taagttctct tggataagca tgaattttat gcaaaagccc
    22381 caccttttca agccaaattt tagcctcttt taaaacctca tctttctttc ttttttgcac
    22441 tttcataggc cctagaagta tattttcttc aacacttaaa tgctcaaaaa gctcataaga
    22501 ttgaaaaacc ataccaactt tttgacgcat tcttggccat tctttaaaat ctttatctat
    22561 tttctcatta tcaatataaa tattaccact tgcaatctct tcaagcccat taatacaacg
    22621 caaaagcgta gattttccac atccgctagg acctaaaatc accacaactt ctttagcctt
    22681 aacttctaaa ttaatatctt ttaaggcgtg atgcgaacca taatactttt gtaaattttc
    22741 tatttttagt atactcattt tagctccatt ttttctctaa ttttcttgaa tataaagtga
    22801 taggataaca aagtataaaa aagataaaaa aaatcaaacc ataaataata aaaggtgcaa
    22861 aatcatttct attatgaaat tctataattt gttgccctac ttttacaagc tctaccgcgc
    22921 cgattaaata agcaaaggtt gtacttttaa tcatacgagt aagtaaattc atgctcatag
    22981 gagttaaacg acgcatagct tgtggaataa taacataagc aaaactttgc accgtattta
    23041 aacctaaaga tgatgcactt tcatactgat gttttggaat actctgcaag gaaacacgca
    23101 ccaaatccat catctcaaaa caaccccaaa tgctaaaaac aataatagct gcacttacag
    23161 aactcaaatc ccacccaaac catctaggaa aaccaaaata caccacaaaa agccatacta
    23221 aaagtggcat aacacgcaca aattctaaac ccaaacgaca aaaagcatag atataggtat
    23281 ttttaaaact cattaaaatt cctaaaaata acccacctat cgaagtaata ataatgctga
    23341 taaatgaaat ttcaagagtg acaaaaagcc cttgccagag tcttaaaagc gtatcggtat
    23401 ttaaaagttc aagcatgaag caaccttttt tcaaacttta gcaaaataaa agacaaaggt
    23461 aaaataatgc ataaatatcc cataaacaac aaaaacaata gctcatctgt cttataggtt
    23521 aaggaattta aactcttcat taaattcacc aaatctggca aggcaataat actaacgact
    23581 gaagtttctt tgattaaaaa tataatatta gcactaatac ttggcataga aatagccaaa
    23641 gcttgcggca aaatcacata acgcaaattt ccaaattttg aaaaacccaa agaaagtccc
    23701 gcttcaaact gctgttttct tatggcttca aatcccgctc ttaaactttc agccatataa
    23761 gaacctccta aaaaactaag tcctactata acacaagcaa aagaaggcct taaagtttct
    23821 tctacgctta agcaaatcaa atcaagcggt ggaatttgct ctaaatgtat attaaattta
    23881 ggtaaagcat aatataagaa aaaaagttga attaataaag gcgtatttct tgaaaactct
    23941 atataaagct tgcaaatatt ttctaaaatt tttattttaa aataactcat taaaatacaa
    24001 aacaaaccta ttatcaaaga aaaaataatt ccaaaaaagc ttagttttat cgtaagccaa
    24061 gcagccgtta aaaaagcagg agcttgagct aatataaaat caaaatccat tctctacctt
    24121 aaattttacc aaagttcttt catgatcata tctttattta aaatttcaat tctacctttt
    24181 tttgtatcaa taagttctga aattttaagt tcttttaaca ctcgagataa agattgtgct
    24241 ctaacattta aatcaattgc aatttgtttt tgtgaaattg tatctaaatt tttttcattt
    24301 tccaaaagat actttaataa tctcgtcctt aaatctaatg cattttgaga taatttcttt
    24361 tctaaaattt taattttatc aaaaagtgaa ctgataagta aaaaattgaa ttctttattt
    24421 tcactgcata aattttgaaa attaataaaa tcaatttcca aaatttctcc atcctcttca
    24481 aaaacagcat tagcaggata atttaatttt ttaaaagcag gcatttctgc tataaaattt
    24541 ggaggattaa aataatgcaa agtaatttct ttatcacttg ctgtactttt ataaatgcgt
    24601 atttttccct tgagtaaaat aaaaaatttt ttagcctctt cgccttcata aaataaaata
    24661 ctattttttt gaaatttttt taattttcct acactagata aaagttctaa ataatctttc
    24721 attatataat atttccattc ttaacttatg ttaaatttaa tttatcttat ttttgctata
    24781 ttaacgccat aaaattaaca tttaagaaag gcttatatga aatttgaaac aattaatcaa
    24841 gaaagcatag caaaactcat ggaaatattt tatgaaaaag ttagaaaaga taaggattta
    24901 ggtcctattt ttaacaatgc tattggaaca agcgatgaag aatggaaaga acataaagca
    24961 aaaataggaa atttttgggc aggcatgctt ttaggcgaag gtgattataa tgggcaaccc
    25021 ttaaaaaagc acttagatct acctcctttt cctcaagagt tttttgaaat ttggctaaaa
    25081 ctttttgaag aaagtttaaa tatagtttat aatgaagaaa tgaaaaatgt cattttacag
    25141 cgtgcacaaa tgatagcttc acattttcaa aatatgcttt acaagtacgg cggacattaa
    25201 tttggcaatt tttttgccaa atcttttttt gccttttcta aaatctcctc atccttggaa
    25261 aaatcaaaaa atttaaactc atttccatgt tgcataaaac catcgagcaa atctccactc
    25321 aaacgatttt taagatcaag ctctgctatt ttaaacccat ctaaagtgct agcaaattct
    25381 tttaaacgac tcggaatttc tttaagctta gtataaagat agcaagtact tttaagccct
    25441 acacgaccta cacggccacg aagttgatgt aaagtagcaa gtcctaaacg ttccgctcct
    25501 acaatcacta tcatactcaa tcttggcaaa gaaatgccca cttccaccac tgtagtgctt
    25561 agtaaaatat ttccctcatc tctaaaacgc tctaaaattt catctttttg tttatctttc
    25621 ccatgagtta caaaaacttt ttcatagtga ctctgccaat attctttagc ctgctctaaa
    25681 gaaagataag gaatattatc actagcactc actaagggat aaataatgat aatttgatga
    25741 tttttagcga tttcttcttt gatcttctcg ctaagcttag aaaagccttc attttgtata
    25801 caataagttg tgatatcttt tttaaaaggc atttgtttaa tgaaactaaa atttaaaagt
    25861 tcagattgta tcatgcttaa agttcttgga ataggcgtag ccgaaaactg tataaaatga
    25921 ggggcaaatt cttgtttact taaagaatga attttctcac gctgagctga tccaaaacga
    25981 tgttgttcgt ctatcattac aagtacggca ttatggcttt ctaaatgaat taaagcatga
    26041 gtgcctataa caagatttgc tttttggata ttttgttcta aatctttttc ttttttaccc
    26101 cctttaataa acaaaatatt cataaaatca ggtaaaaatt tcttagcctc ttcataaagc
    26161 tgatacgcta aaatactagt aggtgccatt aaaatagctt gcttaggata aaccatcaaa
    26221 gccgcaccaa gtaaaaccaa ggttttacca caccctacat cacccataat cacacgcctt
    26281 ttggcttctt ttgagtgtaa atctttttct atgtctttta aggcattaag ctgatcttta
    26341 gtaagagaaa aaggcaaatc tttaagccaa ttggctatat taaaaacatt gatttgatga
    26401 gctttaaaat gcgttttttt agcttttaaa cgctttaaaa aattatatat ttctatatat
    26461 tttaaatctt tgctaaaatt ttgcaaattt tcaaacataa aaaaactttt ttcatcataa
    26521 gcatgcaaat ttaaaagaaa atgtatatat ttatcctcta tgccactttc ttttaaattt
    26581 tcataattaa gatatttatg tataaaagca gcaatttttg tatcttttaa acctaaaatt
    26641 tgatactttg gactaaaacc ctcaaaagaa gttaaaattt taggattgtt aaattgccaa
    26701 gtgtgattaa aatgcgagag tttagcatta aaaataagct cttttcctac cttacaaata
    26761 ccaaaatgcc aagctctagg atgaaaaaac acaaaagaaa tattttcttg ccattcctca
    26821 caaaaaccta aaccaaaaag ttgatttttt cttgaactaa cgctttttat agtgattttt
    26881 tgggtgcaaa tttcattttc tttaggattt ttacttggat ttaaattttc aattttttta
    26941 ggtaaaagaa gcgctaaatc aatagcactt ctaattttta attttttaaa aaattcaaaa
    27001 tcactttctt taattttcat tttgtatgct tgcaaaactt atatttaaaa gctcttgatg
    27061 ttttttaata taagcattca tggtttcaag tttaaccttt tccataagtt ttaactcttc
    27121 tttataatat cccaaattta aaccttgata aaattcgtta aaagacatag ataaacgctt
    27181 gcttaagctt tcataacgca aaggagttga tcctatgaga aaatttttag cttgatcaag
    27241 ttcattttga gtcatgccat tttttataaa atcttcaaaa agctctttta cgattttttt
    27301 agcttcttta gcgctttcat ttttagtttg taaatatcca aaaactctag aaaaagacat
    27361 attcatatca agcatagcat aagctgagta tgcaagacct cttttaacac gaatttcttc
    27421 cataatcctt gaaccaaatc ctccttgccc tagaacaaat aatgcaattt ttgcaagata
    27481 taaatcctta tctttaaaat cagcaaaaaa aggtgtagca aaataaatat aagcttgttc
    27541 actttctggg cgtagcaaaa tttcatcttt gatgtttttg cttaactcat atttttttgg
    27601 agtatttttt ttgcctattt gaagttttga taagagtttt aaaagatctt ccttggcttg
    27661 tttttcttct aaatctcctc ctaaaatcac aaccaaatca ctaagatgaa taaaattttt
    27721 ataaaaattt tgtaaatctt ttaaagacaa agtttctata cttttttcat ctccatcgtt
    27781 tggactttga aattctttac atttaaaaat ttgagcattg agtaaatttt ttgctaaata
    27841 atcaaaatca ctatttttac tcgcaagttc acctaaggca ttgattttta atttttgcaa
    27901 aattttttct tctattcttg gttttaaaag caatttttct aaactcttta aagcaaaatc
    27961 aaaattttct ttcaagcaag aaagattgat ttccaaactt tcaaaaccac tacttgcctc
    28021 taaatttatc gctctaaatt ctaaatcctt aaaaaattta tcatccacgc cttcatttaa
    28081 aatacgtgaa aacatcttag ctaagcctgc tatttcatca taacttctag cacaatttct
    28141 aaaaacaagc tttaaaacaa caataggaaa atcagaattt ttttcaaaaa taaaagggat
    28201 tttaataccc ctactctcta aatactgcat taaaaccttt ctaaaatttc ataagcggta
    28261 ttgcgtttag ctggattttc gcctaaactt ctaatcagcc ttatcatctc atcttgattc
    28321 attctataac ttgctcctgc ggcacttact acattttctt ccatcatggt tgagcctaaa
    28381 tcattggccc caaattttaa agcaagttga cctataagcg agccttgagt tacccaagaa
    28441 ctttgcaaat ttttaaaatt atctaaataa agtcttgcta aagctaaaag tcttaaatac
    28501 ttgttagaac tttgtttcat aatctctgga tgtttttgga ttaaagcagt attatcactt
    28561 tgaaagctcc ataaaataaa agctctaaat ccccctgttt catcttgcaa ttttctcaaa
    28621 tactcaaaat gatcgatgat ttctttatca ttttcaaccg ttccaaacat catagtagct
    28681 gtacttttca taccgatttt atgagcttgg cgatgtactt ctaaccaagt agctgtatca
    28741 catttatttg gtgcgataat atcacgcacc ctatcgctta gcacctcagc acctgctcct
    28801 ggtatagaaa ataaaccttt agcttgtagt ctttgaagta cttcagtaat tgaaatttta
    28861 gatgcctttg cgatataagc gatctcaacc gctgaaaaac catgtacagt gatatttgga
    28921 taatgttctt ttatccaaga aactaattct tcataccatt ctatttttaa ttttgggtgc
    28981 accccgcctt gaaaaagaat ttgcgtaccc ccgatagctt caagctcttc tatctttttg
    29041 cctatctctt caaagcttaa aatataagca tcatcttctt tatgatggcg ataaaaagcg
    29101 caaaaagaac aatcaataca acaaacattg gtataattaa tatttctatc tacaacaaaa
    29161 gtggtgattt tttcaggatg aagttctaat tttcttttat aagccatttc tccaagttct
    29221 gttaaacttg catggtgtaa taaatctaaa gcttcttttt tatccagtct tttcaaaatt
    29281 tttccttgtt ttttacataa ttaaaataat tatagcattt aaaatataaa ttatgctata
    29341 gtttcgctta tgaattacat tgaactatta aaaaataata aaaatatcag aatattagct
    29401 tcggttcagt ttatagtata ttttggagca tggttttctc aaacaggagt ttttaccctt
    29461 ttggttgagc ttaatgctcc tacttgggca acagctacaa gtgctatgct tgctttttta
    29521 cctggagttt tacttgctcc tattaatggc gtcatagtag agaaaaataa acctaaaaaa
    29581 cttttactca gcatgattag catagaatta atttctattt tttgtcttat ttttgtcaca
    29641 agtcttagta tgctttggct tttatttatt ttaattttca taagactttg tgttgcttcg
    29701 atttattttc aagctgaaat gagtttattg gccaaaattt taactcctca agaacttaaa
    29761 ctcgctaatg aaatgcacag tgtcatttgg gcgatttctt atacagcagg tatggcaagt
    29821 gcgggaattt ttatttattt tctaggagtt aaaaccgctt ttctatttga ctgtatactt
    29881 atactcatag gcatttcttt tttagcaaga ttaagcattc ctgattttca tcaaaaaaca
    29941 caaagtcgct tttttaccat gataaaagaa ggatttttct atgttttaaa caataagata
    30001 atttttcatc ttatcttgct tcacgctttt ataggtttaa ctgcttatga aaccttggtt
    30061 acgcttttag cgcaacatca atataaagaa gttttatctg ctgctttagt aatagggttt
    30121 ttaaatgcgg tacgtgcttg ttctttagct ataggaccta tggttttaag taaatttatt
    30181 aataataaaa atttatttta catgtatctt ggccaaggtt ttggtattat actttgggct
    30241 ttaactcaat ttaattttta tatttctttt ttaggtttaa tcggtgcagg tttttttacc
    30301 tcagcacttt gggcttacac ctacactatg atacaaaaaa atgctgacaa agcatatcat
    30361 ggtagagtga tcgcttatac agatatgatt tatcttagtt ttagcgctat tatttcaatg
    30421 cttatgggct ttttatttga aataggcttg agtttagaac taattacagg cttattgggt
    30481 atgattttta tctttgcggc attttattgg aagtggtttt ataaaaaata tttgtgaaaa
    30541 ttcacaaata ttttaaattt taaacaaatc ttgaagattt ttcattgctt cttcattgct
    30601 gatggcatta tttagctgcg atgagcttaa ttcattgagc tctatttcat aaccacttaa
    30661 catagaagca aggcgaatat taataccatt ttttcctatg gctttgcttt tttgttcgct
    30721 atttaaactt acaatagctt ttttatcttc aatttttaca gaatttacaa tagcgggagc
    30781 caaggcacga gaaattaaaa tttcactctc atttgtaaat tctatacaat caatattttc
    30841 attatgaagc tctttgctta ctgcattaat tcttacacct ttaacaccta ctgtagcacc
    30901 tacaggatcg atatttgctc cattggcctg aagaatgatt tttgctcttt cacctggaat
    30961 tctagcacat cctataatat tgacataacc atctttgatt tctggaacct cagcttcaag
    31021 taaacattct aaaaatttag gacttgtacg actaagctcg attttaatac ctttatctgt
    31081 ataaacacgg cgtatcacag cttttaccac atcacctatt ttaaattttt cccctttaat
    31141 gcgatttttt ctcggtaaaa aagctcttaa ttcatctatt tcaataaaag tattttcttc
    31201 attatccact ctaacaactg taccaaaaac catttgccct actttgtttt tatatttttc
    31261 aaaaatagtt tgttctaata atttttgtat atgatattca agttctttat gcaaggtatt
    31321 taccgcagtt cttcctaaat tttccaaaga acattcatag gttaattcat ctcctatttc
    31381 aacatctgga gcttctgatt ttgccttact taacgcgata aaactctcac ttttattttg
    31441 caatctctcg tcattatctg ctactatggt aattttttga taaagattta aatttttagg
    31501 atccacaaaa aactcatatt cttgtccata aattcttttt gcagtattga ttaaagcggt
    31561 agctaccttt tctcttacat tctctaagtt taaatttttt tcattagcaa tagattcgat
    31621 aatatctgct atcttttcca tattttataa aacctttttt gtgggaaatt taaaaatgta
    31681 gataaaaatt atatccttaa taagtttaat taaaagtaaa atttgctaaa attatagatt
    31741 aaaatgaaaa ttcttaagga tttagctatg gaattaaaat tggcaagaac tttgattaat
    31801 gaaaaaccta aaaatattag cctagaaaaa atcgaagagg ctatagaaaa agaaggacaa
    31861 aagttttttt attttgataa agataataca cacaaacaac tcattgccct tgtaaatcat
    31921 tttgaaaaaa aaggagtaag catttatcat agaaccgtaa aatacggact tgatgataat
    31981 gattttatgt atgaggtaca tattctttga gtgctaaaaa actttttatc caaactttag
    32041 gttgtgcgat gaatgtcaga gattctgagc atatgatcgc agaattaaca caaaaagaaa
    32101 attacgcact aacagaagat atcaaagaag cagatcttat tcttatcaat acctgttcag
    32161 tgcgtgaaaa acctgtgcat aaacttttct cagaagtagg tggttttgaa aaagttaaaa
    32221 aagaaggtgc taaaatagga gtttgtggat gtactgcatc acatttagga aatgaaattt
    32281 tcaaacgtgc tccttatgtg gattttgttc taggagcaag aaatatttcc aaaatcactc
    32341 aagctataaa aactccaaaa tttatgggcg tggacataga ctatgatgaa agtgaatttg
    32401 cttttgcaga ttttagaaat agtatttata aatcctatat taatatctcc ataggttgtg
    32461 acaaacactg cacttattgt atagtgccac atactagagg agatgaaatt tccatacctt
    32521 ttaacatcat ctacaaagaa gctcaaaaag ctattgaaaa aggcgctaaa gagattttct
    32581 tgctaggaca aaatgtcaat aactatggca aaagatttag aaacgaacat aaaaaaatgg
    32641 acttttcaga tcttttagaa gaacttagca ctatagaagg tttggaacgc attcgcttta
    32701 caagtccaca tcctttgcac atggatgata aatttttaga agtttttgcc aataatccaa
    32761 aagtttgcaa atccatgcac atgcctttac aaagcggctc aagtgaaatt ttaaaagcta
    32821 tgaagcgtgg ctatactaaa gaatggtatt taaatagagc tttaaaactt agagaacttt
    32881 gtccaaatgt tagcatttct acagacatta ttgtagcttt tccaggggaa agtgaaaaag
    32941 attttgaaga aactatggat attttggaaa aagtgcgttt tgaacaaatt ttttctttta
    33001 aatactccaa acgcccttta acaaaagccg caaccatgcc taatcaaatc gatgaagaaa
    33061 cagcttcaag aagacttagc accttacaaa atcgtcatag tgaaatttta gatgaaattg
    33121 taaaaaaaca agaaaataaa acttttaaag ttttatttga agaattaaga gcaggcaata
    33181 gcattgctgg aagaacagat aataattttt tagttcaagt tgaaggtagc gaagaacttt
    33241 tagggcaatt taaagaagta aaaataacta atgcaaagcg tatggtttta tatggggaaa
    33301 tcgtttaaaa tccattgctt aacatatata attttcatct tgcaatggct tattttttta
    33361 agctgtaaaa agcactataa aggtgaaaaa gttgaccgta aagctggtgt gatacttttt
    33421 tggcatggaa aattagcact catgcctttt gcgtttagac attatagaca aaaaaataaa
    33481 aaagcctatg tcatgatctc ccaccataaa gatggagaac aaattgcaaa aatcatcaag
    33541 cttttcggtc ttgatactgt aagaggaagc acttcaaggg gtgctagcag tgcacttaga
    33601 gctgcattta aagttttaga acaaaatgac gatatagtta tcacgcccga tggtccacga
    33661 gggccttatc atagtatttc agatggttct atcattttgg ctcaaaaaaa agaactaaag
    33721 ataagaattt taaactatga agcaaatcgt ttttggaaat ttaaaagttg ggataagatg
    33781 atcttgccaa aaccttttag taagattact tatagtctaa gtgaaccttt ggatatttta
    33841 tctttagata aagaaaaagc taaagaattt ctaatgaaac aatttgataa aattagctta
    33901 gctgatcaat ttaaggaatg aaatgttatt tttacttaaa aaaatatttc cacaactttt
    33961 tattagtatt attttagaag ataaaaaaaa tattgtaaaa gcttctattt atagaggaaa
    34021 taaactaatc agtagcaatg aaaaaacttt tgataaaagc gaaaatttac tagaatacat
    34081 aaaaaattta agcaagcatt tcttatttta ccacactgct ttatttttag atgccaaaga
    34141 acaaggatta atacctagta caaatattca agattgtgag cactttaata taggaaaaat
    34201 cagcttacag catattttgt ttaataatgc ccttgtttat acggctaccg aacatgtgga
    34261 atattatagc gagctttttg aagaatatag aggtttagat tttttatatt ccccttttgc
    34321 tcttctttac tacaatatac aaaaagaaaa acagcctgat gatcaaattt tactttatgg
    34381 atttaagcaa ggacatcttt tggcaattat tgttgctaaa ggcaatacta ttttatacgg
    34441 tgattttaaa atatttgagc aagaattagg tttagagctt gaacttccat cagaagataa
    34501 tcaagaaatt gaaaacaaca acaatgatac tgaagttacc ctagataact tcaatgaagc
    34561 cttaaataat aaatttgatc tacttgatca agaaaataat cttgaaactt tgaataataa
    34621 tgataatttt aatcttgatg aattaaatca atttagcaat gatatggaac tatgccgtta
    34681 tattattacg agcattgaaa aattttataa tgatgataaa tatgctgggg tatttatcaa
    34741 tggtatttta ttatatagtg aatcagatat taacataagt gctattgatt ttttagaaag
    34801 tgaaactttt ttagagataa aaacgaaaca aatcaacacc ttagatctta tgatagaatt
    34861 gatgcaaaag gagcttaaat gacttatagc ttcatacagc caagaaaaaa acctattttc
    34921 acactctttg ataaaatttg gctaggactt tttggtttta gtatattatt tatcttgcta
    34981 gtatatttta catatacaat aaaaattgca ttaatcaata gctctatcga tgatgaaaaa
    35041 caacaagtta tagtgcttca aaatcaaact aagcaaaatg aaatgcttta tgaaatttta
    35101 tttgatcaaa gccaaatagc gaaaaatttt aacactcaaa atcaaattgt taaagaaagc
    35161 ttaagaaatc tatttgatat tattgtaaaa actgataata ttactcttga aagtgttgaa
    35221 caagacgaat attccttaaa acttatcgga gtcactccta caagagaaat gtttactcta
    35281 cttttagaaa cccctttaaa aagcatcttt gatcaaagct atacaaccta ttatcgctta
    35341 gataatgggt ggtatcgttt tgttagtatt agtaaacaaa ttccaggagt tgcagatgaa
    35401 agataaaagt ctagaagaaa ttgatttatt aaagcttatc atttgcgcgt taagttttat
    35461 aagcgtttgc acagccttga tcttattttt acttttaccg acattaaaaa attacaaaca
    35521 agcaaatctt agagaaaatt cacaacttgc tatcttaaaa gccgctaaat caaaatttga
    35581 ctttagtgaa gataaaatat caactctaag aagcgaaaac aacaaaagtt tagagcaatt
    35641 tgagcaaaat tttaatatag gaaattttga tattttttta caaaaatatt ttcaaaatgt
    35701 aaaaattcaa gaaactaagc ccgaaaaaca agaaaaatat ctaaaaaacc gcttagccat
    35761 taaagcgaca atgaacaatc ctagaagact ttatgatttt attgatgctc taaaaaacta
    35821 taataactta atcaagcttg attatccact taatcttaaa gcaggagagc aaggcatctc
    35881 tatagatctt actctcaaag tttattcaag ctaaactcac atcttcgcct tttaaaattt
    35941 gattcatagt attcattgca cacatttttc cacacatgga acatgagttt aaatcatcag
    36001 ggcgacgctc attaaacatt tttttagcct tttctccatc aatagcaagt ttaaacattt
    36061 tctcccaatc tatctcttgt ctagccttac tcatctcatc atctcttgct ctttcttttg
    36121 gaagtttagc tatatctccc gcatgagctg caattttagt cgcaactata ccctctctaa
    36181 catcttctaa atttggaagt cttaagtgtt cagcaggtgt tacataacac agcatatcag
    36241 caccgctagc tgcagccaca gctcctccaa tagcaccact aatatgatca taccctgcgc
    36301 caatatctgt taccaaaggt cctaagacat aaaaaggcgc tcctttgcat aaacgctttt
    36361 ctaattgcat atttgcctct atttcattaa tagccatatg ccctggacct tctatcatta
    36421 cttgaacccc aacatcccaa gctctttgag taaggagtga caattctata agctctgaaa
    36481 tttgcgcccc atcacttgca tcgtgagtag agccaggacg caaagcatcg cccaaagata
    36541 aagttacatc gtattttaaa caaatgtcaa gcaaatcatc ataatactca aaaaaaggat
    36601 tctcagcatc tttcatcatc atccaagcat aaagcacaga gcctcctctt gaaactatat
    36661 ttgtaagtct tttactttgt ttaaaaatat gcgctgcgcg agaattaata cctgcatgaa
    36721 ttgtcataaa atcaacccca cttttagcat gatgatatac aacatctaaa aagtctttag
    36781 caccaatttg ttttaaatct ttttctaaaa atcctaccgc atcatataca ggaactgttc
    36841 ctatcatagc ttttgaaaca ttaacaagct cgtctctaaa acgacttgtt ttgccataat
    36901 tgcttaagtc cataatcgct tctatgtcaa atttatgagc aagctctact tttttcattt
    36961 cctcgctata atcaacgcaa tcatttgaaa ctcctaaatt tacattaacc ttagtacgca
    37021 gtccaaaacc tataccattt ggatcaagac ttttatgatt aatatttgca gggataataa
    37081 ttttaccgca agcaatattt tcaagcaaaa aatctttact taaattttct ttttgtgcaa
    37141 caatctgcat ttctttagta aaaatacctt ctttcgcata attcatttga gttttcataa
    37201 atttatcctt taaaaaattt ggataaatga agggtgagta taaattttta aagtattgaa
    37261 atttataaat cttcccgacg ctggcattat ccagatccgg ttcggtctaa gcttttagct
    37321 tactctcagc ctgttacaca agctcccgtc atttatgttt taattataca ctttaaatat
    37381 ttatttttgc tttatgcgtg gcagtctttg taaaatttat aagttcttct gtagttttta
    37441 tatgataggg aagttttcca aggcaatatt tcaaaatttc agcagctgcc aaagcatcat
    37501 ctaaagccct atgatgcgta ttttccacgc ccagaaattc tttcaaaacc tctagtttat
    37561 attttggact ttctatacaa cattgtgcaa attctatagt acaaatacga cgattaagta
    37621 aaatgccaaa accacactca tttaaagcct tagaaataaa actataatca aaacgcacat
    37681 tatgtgctac aaaaatactg tcttttaaaa aaagcctaaa atcacttaaa acctttgtta
    37741 aacttggagc attttccacc atctcataag taatacccgt aagttcggtt atattttctg
    37801 gaatttcttt tactttaaca aaactttgaa agcgtccaat ttctttagaa ttttgaattt
    37861 ttactgctcc aatttctaaa atttccccct tacttacacc gccagtactt tctatatcta
    37921 ctatacaaaa aatttcatct ttaatttttg ttgtgcgtgt tttaaggata aaaatattat
    37981 ctttattcaa agttaagccc aaacccaaaa gctcaaaagt ttccaaatct aaatcaaaat
    38041 tttttaattc ttcaactttg gcaaactctt gcatcaccca atcataaggc ttgctttgct
    38101 tgtttaatat agaaataatc tgatcaattt gctgtaaact caaaattcaa gctttaaaga
    38161 tgaaattgca gttttataat cattagaaga aaaaatataa cttccagcca ccaaaatatc
    38221 agctccggat tcctctaaat cgctagcatt taaaccatta acaccaccat caacctctat
    38281 aaaaacttta gcattttttt tatcaatcat ttggcgtaat tctttgattt tttcatgtac
    38341 caaaggtaaa aatttttgtc caccaaatcc aggattaaca ctcattaaaa gcaccatatc
    38401 tacaaattct agcatgtgtt taatagaatc aataggagtg tgtggattta aaacaatagc
    38461 aggatggatt ccttgacttc ttatatattc acaaagcctt ataggatgaa cttcgctttc
    38521 cacatgaaaa gaaatgaatt ttggtttcaa agggataaaa agatctataa atttacttac
    38581 atctttaacc atcaaatgca catctaatgg caacttacta atagttgaaa ttttttcgat
    38641 cacgcaaggt ccgaaagtca aatttggaac aaagtgtcca tccattacat caatatgtaa
    38701 aagatctgca cctgcagctt caatagcttt aacttcttct tctaatttca aaaaatttgc
    38761 agacaataaa cttggagcta catacatgat caaaacctta aactatatat aaatgtgata
    38821 aataatattt tatcgactta tatattaaaa aaactataaa ttatggaata ttttaagctt
    38881 aattttgata gaatcttcat ttaaaaattt tcataaggac aagaaaatgg caagagtatg
    38941 tcaaatcaca ggcaagggtc caatggtggg taataatgtc agccatgcta acaataaaac
    39001 aaaaagacgc tttttaccta atctcagaac agttcgtgta actttagaag atggcaccac
    39061 gagaaaaatg agaatcgcag cttctactct gagaactcta aaaaaacaaa attctaaata
    39121 attttgagga tttattcctc aattttaaaa tttccaattt aaaaataaac tttaataaat
    39181 cacttatata acacacattt aaaaattatt attaatttta ttatttttta agccaaaaat
    39241 atcttttaat agtgtaaaat accttgttaa atgaatttta aatttcacta atacaaggag
    39301 agtttatgct acatgaatat agagaattaa tgtcagagct aaaaggtaaa gatgctcatt
    39361 ttgataaact atttgatcgt cataatgaac ttgatgacat gattaaagat gcagaagaag
    39421 gtagaacttc tcttagcagc atggaaattt caactttaaa aaaagaaaag cttcatgtaa
    39481 aagatgaact tagccaatat ctagcaaatt ataaaaaata aggcaaaaca atgtttggaa
    39541 gtaaaataaa ccattctgat cttcaaaaac ttgaagaaga aaataaaaat cttacacata
    39601 aaattgaaaa atttcaatcg gaaaatttag aattaaaaaa taaaattaca tcattagaac
    39661 aagcggcttt agagtctaaa cttaaaacag atcttttaaa tgttttatta actggggttt
    39721 taaaaaatat tactattatt caaggcgata tgttagaaaa tgtaaataag gcagaagtta
    39781 tctctagcta ttctaaaact tctcttgctg aaatggatga acttaaccat attgctaatt
    39841 ctatcaatgc ctctttgaga aatattacag aatcagccaa taaaacaaga gatgttgcag
    39901 gaacattgca tagaagtgta gatgaaatta ctaatgtaat taatctaatt aaagatgttt
    39961 ccgatcaaac caatctttta gctcttaacg ctgccataga agctgcacgc gcaggtgaac
    40021 atgggcgtgg ttttgctgtt gttgccgatg aagtaagaaa actagctgaa aaaacacaaa
    40081 aagcaaccac agaagttgaa atgaatatca accttctaaa gcaaaatgca aatgaaatgt
    40141 atactcaaag tgagcaagtt gaaaaaattt ctatagattc taatgctcat attatgagtt
    40201 tttctgaaaa atttactcac ttggtaaatg aagcgcattc tactaattca aatgcagttg
    40261 gtatcgcttc agaagctttc gtatctttag caaaactaga tcatatagct tttaaattaa
    40321 atggttataa agaaattttt tccaaatcag gaaagcaatt agccgatcat acatcttgtc
    40381 gcttaggaaa atggcttgct agcacaggaa aagaaagatt tgggcaaaat aaaagcttct
    40441 taaaaattaa cgagccacat gaaaaagttc atgaaaatat gaataatgct ataacaatag
    40501 caaatacaga agatattagc aaagatatta ctcaacacag cataattaat aaatgcgaag
    40561 ttgctgaaaa tgcatcactt gatcttttca atgtatttaa agaaatgctt gatgagtcag
    40621 atcattaaaa tcccaggttg aaccttttta aggtttaacc taaataatct ttaattttcc
    40681 ccacttttcc tttaaaaacc acatataagc aaaatcaagc aaaggcgttc ttatcatatt
    40741 tttacatttt ttttcaaaat cctgcacctt aacataaaca gcttcaatct cttcatcatc
    40801 aactccacct ccagaagaaa ttttatcttt ttcatcaact tctgcgaaat aaaagctttg
    40861 cttgcttaca cctgaaccaa atcctgtata aaaatctcct attttttcta aatttttagg
    40921 agcatatcct agttcttcta tacattcttc ttttgctatt tcctctaaag ataatttttt
    40981 atccacaagc ccagaacaaa gctctatagt atagcccata tcatcatctt ttacataatc
    41041 tttatcatgc atttgatgat accaaagtgg tatacgaaat tggcgtacaa aaataaaact
    41101 ttctaattct ttatgataca aaagcactga aacactatct ttagattcta taaaatccca
    41161 agtgcaaagc ctaccattac tttcataagc aaatctctta ggcttaatat aatttgattt
    41221 ttcaaaagaa agttctttta aatttttaaa cgccataata aaacctttta tttatttttc
    41281 acattgtact ttatttttgc ttttttgaaa acataaaggt gattaaagcc ttaaaaaatt
    41341 aaaaatcata tttataactt aaccaaaaac ttcttccttc tgtatagtct tgatagcgat
    41401 ttgcatatcc agcaggatta gccccatccc atcttgtaac ttgcggatca aagaaatttt
    41461 tatcaaaaag attttacact gcaaaactta agctagattg cttattgatt ttataattta
    41521 tccctaaatc tactatataa aaaggcttat atttttgcca tggcagacta ccattaccgc
    41581 caccttttgc tttagctata gtatcaagtc ttgctcgtgt ttttatatag gaactaaatt
    41641 tacctcgctc atagtttaat tttaacattg ctatatgtct tggtaaattt tctattctat
    41701 caccaccaaa ccaatttttt tgaccatctt tgtagcgatt atccataaaa gtataacttg
    41761 aatttaggct aaaaccattg taagttttgg tattaatgca aattctatac ctttagtctg
    41821 cgtttttcca agattaatag gacgcttaca aacaatgcca ttgctacaat taatatcatt
    41881 attttgcata cctgttaaat cttcactact gatttgattt gtaaaatcag taataaatcc
    41941 tgtagtagaa taatgcgcaa aatcaaatac cataaaatca acacccaatt cataatttat
    42001 actttcttct ggttttaagt cagggtttcc aaaataagca ttattattgg cataattata
    42061 atatccattt gtcaactgct tggcagcagg agttttatag ccttttgaaa cacctccttt
    42121 caaggctata ttatcattta agtgataaac caaataaacc ctaggcgtaa atttagaatc
    42181 aaacaaatcg ctataaatat aacgcaaacc tgtagtaaaa atcaaatcat cggttataaa
    42241 atactcattt tccccataaa gcgcaaccgt ggtttgatca agatttttac ctcttatttg
    42301 actacctgcg cttgcttgat cattttttaa tatctcataa tcaatccttg caccaaaggt
    42361 atttactaaa ttaccgtatt gacctaaatt ccaaggtaaa acaaccttac cttctcctac
    42421 ccaaatttgg ctatgcagct ccttatcctt agtgctacca tattataaat atgagttagt
    42481 tgaaccaaaa tcatagttac catcatgatt taaaacaata ttatccttaa aaagttgtct
    42541 ttcactttta atagccctac tacttgtaga attcactgaa atttcattaa tatatcgttc
    42601 tatatcaaaa tatatattat ttttatcatc tactgtccaa ttaagcctag aaccaaaacc
    42661 caagctagta aaagcacctg ggctatgact agcaatttga taattatcag gtctttgatt
    42721 gttattattc caaaccggtg taggccattt taaatcagaa gctgccttat cataatactt
    42781 caaccttgca gaaattgata atgtatcttc aatcaaaggg gttgctacat aagcattaaa
    42841 accgcccgca ttgccatagt gattagagtg ctgttgtaaa agagtattaa attctatatt
    42901 tgcttcgatt ttatcaggat ttttcttagt gataatattt atcacaccgc ctacagcatc
    42961 actgccataa agtgtagaag ctggaccacg tataacctca atacgctcta tcatagacaa
    43021 aggtggcaga tatcctgact cactgccact aaaaccatta tcataaaacc catttgcaac
    43081 actttgacgt tttccatcaa ttaaaactag agtataagaa ctaccaaaac ctcgtatgct
    43141 aaaatcataa gtgcctgttt tattcatagt cacatctaca cctggaatat ctcctatagc
    43201 ctctcctata tccttaattg gcttttttca agctcttctt ttgtaatgat agaaatacta
    43261 gcaggcgcat caaccaaatc ttgttcaaaa ccactagcac taaccacaac atcattaagt
    43321 tgatattttt cttctgcttt taacaaagct ccagataaaa ttaaaaaaca cagtaaactt
    43381 ttt
//
LOCUS       DARGBD010000003        42579 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.003, whole genome shotgun sequence.
ACCESSION   DARGBD010000003 DARGBD010000000
VERSION     DARGBD010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 42579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42579
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.003"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..578)
                     /locus_tag="SFZ04_000108"
     CDS             complement(<1..578)
                     /locus_tag="SFZ04_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HEG8064429.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFIN"
     gene            complement(575..799)
                     /locus_tag="SFZ04_000109"
     CDS             complement(575..799)
                     /locus_tag="SFZ04_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEG8064430.1"
                     /translation="MTLDNLKDGQKAIIVNLSAQKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDASCVILRSDEAKTIEVNLI"
     gene            complement(881..2216)
                     /locus_tag="SFZ04_000110"
                     /pseudo
     CDS             complement(881..2216)
                     /locus_tag="SFZ04_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
     gene            complement(2225..3592)
                     /locus_tag="SFZ04_000111"
     CDS             complement(2225..3592)
                     /locus_tag="SFZ04_000111"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8064431.1"
                     /translation="MTGISVFDHKLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQPARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLEKIKN
                     SAILK"
     gene            complement(3602..4766)
                     /locus_tag="SFZ04_000112"
                     /pseudo
     CDS             complement(3602..4766)
                     /locus_tag="SFZ04_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            complement(4779..6224)
                     /gene="dcuC"
                     /locus_tag="SFZ04_000113"
                     /pseudo
     CDS             complement(4779..6224)
                     /gene="dcuC"
                     /locus_tag="SFZ04_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            complement(6228..6590)
                     /locus_tag="SFZ04_000114"
     CDS             complement(6228..6590)
                     /locus_tag="SFZ04_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG8064432.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPDSGEIESHDIKEQ
                     TKQSLKNIGAILEENGISYDKVVKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEVIAQKG"
     gene            6758..7414
                     /locus_tag="SFZ04_000115"
     CDS             6758..7414
                     /locus_tag="SFZ04_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG8064433.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANS
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
     gene            complement(7415..7885)
                     /locus_tag="SFZ04_000116"
     CDS             complement(7415..7885)
                     /locus_tag="SFZ04_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HEG8064434.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
     gene            complement(7942..9366)
                     /locus_tag="SFZ04_000117"
     CDS             complement(7942..9366)
                     /locus_tag="SFZ04_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEG8064435.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGVKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            9538..9852
                     /locus_tag="SFZ04_000118"
     CDS             9538..9852
                     /locus_tag="SFZ04_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HEG8064436.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            9855..10550
                     /locus_tag="SFZ04_000119"
     CDS             9855..10550
                     /locus_tag="SFZ04_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064437.1"
                     /translation="MLFGFDDKQEFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     SYAKNTKSLKMIFGNFLHDIMHVSFGKIQNINIKLNAYAFYFQKRKSLIFNTKISKNV
                     DLLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGKNIDQDGDLIIIDKKFAILPLCK
                     EINTHNLKIENEIHGLLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            10550..11041
                     /gene="fldA"
                     /locus_tag="SFZ04_000120"
     CDS             10550..11041
                     /gene="fldA"
                     /locus_tag="SFZ04_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HEG8064438.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIALKLGISDVFNISDIDAAKINSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWIEQIKP
                     YFA"
     gene            complement(11087..11617)
                     /locus_tag="SFZ04_000121"
     CDS             complement(11087..11617)
                     /locus_tag="SFZ04_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064439.1"
                     /translation="MSKITLILSFFITLFMSACTNATFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLTLKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(11623..12333)
                     /locus_tag="SFZ04_000122"
     CDS             complement(11623..12333)
                     /locus_tag="SFZ04_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEG8064440.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNTTVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDNELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            complement(12382..14187)
                     /gene="selB"
                     /locus_tag="SFZ04_000123"
     CDS             complement(12382..14187)
                     /gene="selB"
                     /locus_tag="SFZ04_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HEG8064441.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENDEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            complement(14184..15506)
                     /locus_tag="SFZ04_000124"
     CDS             complement(14184..15506)
                     /locus_tag="SFZ04_000124"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEG8064442.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVTKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKNIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEEKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            15584..17257
                     /locus_tag="SFZ04_000125"
     CDS             15584..17257
                     /locus_tag="SFZ04_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8064443.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYKARASVYDLGLDLEQSKEVQNRLILVDSDTQTV
                     EFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAKDLSVVRK
                     DFTRQSGCYNLLNFENLEVLLEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQKMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLVRSGMEFRASYFEYQTMAKDELFACIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN"
     gene            complement(17254..18555)
                     /locus_tag="SFZ04_000126"
     CDS             complement(17254..18555)
                     /locus_tag="SFZ04_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8064444.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSVKWGLSSLFD
                     LSVALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDALNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFSENLGVVDIYKNSKNLVVKFDSKLTNKEELEGKIKI"
     gene            18721..19323
                     /gene="rdgB"
                     /locus_tag="SFZ04_000127"
     CDS             18721..19323
                     /gene="rdgB"
                     /locus_tag="SFZ04_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEG8064445.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLTPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIVLSDDSGICVDVLEGNPGIYSARFSSKGDDKSNR
                     DKLVNEMIKKGFKQSKAHYVAAIAMVGLIGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILTKG"
     gene            complement(19354..21825)
                     /locus_tag="SFZ04_000128"
     CDS             complement(19354..21825)
                     /locus_tag="SFZ04_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HEG8064446.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSLFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKARNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNDLVEKRDLATDEKEKDQIRLAIKKHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLKFQITVISSNYIALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLMLSNIEPIIKLGIMMSIGISLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDSKKRHMIYGISVLAIILALIGIS
                     KLRVENSFVNYFKDRSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSNTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNKFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKAKFPNQHKEHILKQ"
     gene            complement(21825..22394)
                     /locus_tag="SFZ04_000129"
     CDS             complement(21825..22394)
                     /locus_tag="SFZ04_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HEG8064447.1"
                     /translation="MKKIFLILALFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAADGIFKLFDSIIDYKLMAKLSLSKNYSKLNPKEQEKFTTAFEASLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLVYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            complement(22404..23102)
                     /locus_tag="SFZ04_000130"
     CDS             complement(22404..23102)
                     /locus_tag="SFZ04_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEG8064448.1"
                     /translation="MRIKFISFILIFFAIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRNFFDNLLAPLRFVGNILQFKFEE
                     AGEEFKRFTANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            complement(23147..23590)
                     /locus_tag="SFZ04_000131"
     CDS             complement(23147..23590)
                     /locus_tag="SFZ04_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEG8064449.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKKDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            complement(23604..24923)
                     /locus_tag="SFZ04_000132"
     CDS             complement(23604..24923)
                     /locus_tag="SFZ04_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEG8064450.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            complement(24933..25997)
                     /gene="mqnE"
                     /locus_tag="SFZ04_000133"
     CDS             complement(24933..25997)
                     /gene="mqnE"
                     /locus_tag="SFZ04_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HEG8064451.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            26141..28489
                     /locus_tag="SFZ04_000134"
     CDS             26141..28489
                     /locus_tag="SFZ04_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG8064452.1"
                     /translation="MLNKELEIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKIKFES
                     IIKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNY
                     ALNFIDEKNLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHF
                     GANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDK
                     HVIFDLNLVFALRRLKYGKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPF
                     WTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIES
                     ENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSK
                     LENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKE
                     LTLKRSKIFLEQDEILQDKIIHIKSNLFIIKNTFEDIVMISKLAKENDFKFWFNNETN
                     LSLQIVAPLHFNIAIILSSLTNLNLIFMNFFELFDNKIYLRFEYDNIISDEQKLKLCE
                     LLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKLGLNTKDQQGLMAYLMNVFNEL
                     ELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            28494..30290
                     /gene="glmS"
                     /locus_tag="SFZ04_000135"
     CDS             28494..30290
                     /gene="glmS"
                     /locus_tag="SFZ04_000135"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEG8064453.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAVGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDVIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            30293..33418
                     /locus_tag="SFZ04_000136"
     CDS             30293..33418
                     /locus_tag="SFZ04_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEG8064454.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKASFVDFPIAFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHNAYE
                     LHLMSSVGKRF"
     gene            33474..34865
                     /gene="fumC"
                     /locus_tag="SFZ04_000137"
     CDS             33474..34865
                     /gene="fumC"
                     /locus_tag="SFZ04_000137"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEG8064455.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDSIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPYIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGPKA"
     gene            complement(34895..35938)
                     /locus_tag="SFZ04_000138"
     CDS             complement(34895..35938)
                     /locus_tag="SFZ04_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEG8064456.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITI
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSIIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(35942..36949)
                     /gene="ruvB"
                     /locus_tag="SFZ04_000139"
     CDS             complement(35942..36949)
                     /gene="ruvB"
                     /locus_tag="SFZ04_000139"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEG8064457.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            37040..37450
                     /locus_tag="SFZ04_000140"
     CDS             37040..37450
                     /locus_tag="SFZ04_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HEG8064458.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            37451..37809
                     /gene="ssrA"
                     /locus_tag="SFZ04_000141"
     tmRNA           37451..37809
                     /gene="ssrA"
                     /locus_tag="SFZ04_000141"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            38041..40289
                     /locus_tag="SFZ04_000142"
                     /pseudo
     CDS             38041..40289
                     /locus_tag="SFZ04_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866779.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(40432..42516)
                     /locus_tag="SFZ04_000143"
     CDS             complement(40432..42516)
                     /locus_tag="SFZ04_000143"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEG8064459.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYKLKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
BASE COUNT        14637 a         6217 c         6774 g        14951 t
ORIGIN      
        1 tcattaataa aatataataa atcttctttt tccggacttt tttcgcaaag cggagtataa
       61 aattgagatc ttggaataaa tttactttca aataaaataa taattttttg cagcaaaagt
      121 tctaaatttt cttttgtttt tgctgaaatt tcaacaactt gactttgaaa ttcttggctt
      181 aaaatagaag tgtcaagctc tataccttct tttttggctt catcgcacat atttaaagct
      241 aaaagcattt ttttattaag gcttaaaagt tctgcactaa ggataagatt acgttctaaa
      301 ttggtagcat ctaaaacatt aacaataaca tcatagtcat tttgatttaa aaaatggcgt
      361 gtgatttttt cttcttcact atatccatct aaagaataag ttcctggtaa atcaatgact
      421 tcaaattcat agtttttgta aaaagttttt gcacttgctt tttctatagt aactccgcta
      481 aaatttccta ctttcatatt agctttgcaa agcgcattaa taagaagact tttgcctaca
      541 ttaggctgac ctacaagggc tattttgatt tttttcatat aagattcact tctatggttt
      601 tagcttcatc agatcttagg ataacacaac ttgcatcaag ctctaccatt atggtggcat
      661 tttttaaaga ggagtgaatt tttttcaagt ttttattttt gataaatcca aagcttaaaa
      721 gtctattttt gagttctttt tgagcgctta aattgacaat aatagccttt tgtccatctt
      781 ttaaattatc taaagtcatt gtaattccta aattaataat aaatattata ataaaaaagt
      841 gtaatgaaat tatccttctt ataaaaagaa ggattaatat ttaaaaagaa aagtggttta
      901 aattttctag attgatgatt tgatctagaa ttttgttagc tttagcatta tcaaggtaaa
      961 tttgtgcatt ggctaaaaat ttagctttta attcttcaaa acttaatgga ttatcaaaat
     1021 tacctttatt tataaaaaca tctttttgga ttgtgcgtcc atcttgcaaa ctggcttcta
     1081 aatgccctgg aaaatatttt ggaaagcctt gagattttct tttttcgtaa ctgatttttt
     1141 tagcaaattc tagtacttct tcacgcttta aattttcata agattcaaga gtgattttac
     1201 catcaaagaa tcctagagtc attaaaaaag catggaaaat ttagcttcat aagcactatt
     1261 tggagtgtat tttgcttcca aaggatcgca gataaaagaa acaggaactt catctacaaa
     1321 acaatgaata cttttaattt catcagcttt taaaccatca ttttttaaag caatagcaca
     1381 atcaataagc ccatgagcaa aatgacaact tggataaggc ttgattcttg catagtttgc
     1441 caaatttctc ctaaggcttt gttaagttct gttttatcgc attcttcttc tatgccaaaa
     1501 catttaaaga tattatccct accttcaaaa atactcaaag gtccactcat atggttttta
     1561 gcaaaatgag ctactataat accgttttta atagcattgg caatatgcaa aacttttgaa
     1621 ttagatccat tggataaaaa ctcattaatc ccacttgcaa aacttcctgc aagtcctaaa
     1681 gcattgatga tttgttcttt gttaagatct agcaagattg cacttgcact tacgcttcca
     1741 aaaattcctg caatagcagt ggtatgaaaa ccacgcttat gaaaagtacc tttgcttgca
     1801 atgcctactc tagctgcaat ttcccagcct actataaaag ctttgatgat ttttttcgca
     1861 tctttgttaa catgaaaacc ataacttaaa caaagtggag ttaaaattgc acttgcatgc
     1921 aaaatcgctt ctgtatgtgt atcgtcaaaa tctaacgcat gagaagcaat gccatctagc
     1981 atggctgcgt atataggatc taatttttga tcatttaccc aaataagagt atttttttct
     2041 gtgcttaaat tttcaaaagc tttaaaagca tttaaaacac attcttcttt gcttgctgct
     2101 atagctgttc caaggctatc aagcataagt tctttagctc tttgaacaac tgtattaggg
     2161 atattttcat atttaagatt gaaaataaaa tccgctaaaa tttcactata gaacatgatt
     2221 tttcctattt taaaatagca ctatttttga ttttttccaa aaattcatct acaagttttg
     2281 gtgcatatcc tacataggtt gttgcatcaa gcaaagcatc gatttctttt tctttcaata
     2341 ccttagatac tcttttatct gcaagtaaaa cttctttaaa ggttttttgt ttttcgatac
     2401 ctagcatagc attttcataa acaatctcat gggcgtgttg ttttccataa tgatcgctta
     2461 atgcaaacat aacacgctct gctaaaacaa aaccattaag agtatttaaa tttttaagca
     2521 ttttgtcttt ttttacttct aaatcactaa gagcgaattt catatttgct aaaaccacag
     2581 aaagcattaa aaacatttca ggtaaaagct tccattccat tttccaaact tgaccatctc
     2641 tttcatgttc atgtctttca atatcgctta aaatggctaa atttgcctta aaggcattgc
     2701 ttactgtaac tgcattttcg cttactgcag gatttctttt gtgtggcata gtgcttgatc
     2761 ctacttgtcc tttgccaaaa ggttcagcaa cttcatcaat ttcattatgt gaaaggatta
     2821 aaatttcatg agcgattttg ttaaaggttg cgttgatatt gcctagtaca aaaccaagtt
     2881 ctataaagcg atcacgtgca ggttgccaag aaatattagg cacatcaagt cctaaatttt
     2941 ctaaagtgag tttttctact tcattgcact catcacttaa acttgcttta gttcctacag
     3001 cgcctactat actgcctaca taaagtcttt tttcaagttc aagtattctt tcaaaatgac
     3061 gctcaagttc gcttaaccaa atagccactt tatgtccaaa agtaataggc aaagcctgaa
     3121 gtgctaaagt tcttcccatc atagcagtgt ttttatgggt tttagctagt ttcgctaagg
     3181 cttttgcgat agcttttaat tcgcttttta caagagtcat tgcttcttta aattgtaaaa
     3241 ccagtcccgt atcgatgata tcttgagtgg ttactccaaa atgtacatat tcacctaaat
     3301 tattatcgca agctttttct aatcctctta cagtaggaac taaagggtgt ttggtttttt
     3361 taaattcagc aaagataaag tccatatcca taaatttata atgagctttt tttgcaatct
     3421 catcagctgc ttttttaggg ataattttaa gttttgcttg tgcttttgct aaagctgctt
     3481 caacatcgag ccatttttgt atgcggtttt gttcgcaaaa aatagcacgc atttcctgcg
     3541 tgctccatga gtctgctaat aatttatgat caaatacact aattcctgtc atcttatctc
     3601 cttatttttt aatactatca aaagcttgtg ttaaatcagc aattaaatct ttagtatctt
     3661 caagacctat atgaaatctt acaaatggtc ctcttgcact taggtctgtt gcagttctag
     3721 gcggagtagt tacggtggct aagctttcat atccacccca gctagcacca attgaaaagt
     3781 attctagttt atctacaaat ttaatagcat cctctttgtt ataaccttct gcaaattcta
     3841 tggtaatcat accatttgca cctttatgat cacgcatgaa aatttcatga tttgagtggg
     3901 atttgagttt tggatagaaa attgttttaa tttcttttct gctttgtaaa aactctacaa
     3961 tttcatcagc acttttttca tgagctttca ttcttacatc tagtgttctc ataccacgaa
     4021 gtactaagta agcatcatca gggcttgttg taaagcctaa agcttctgga agtttgtcaa
     4081 aatttttcca ttctttttcg ttgattacta ctatacccat ggttacatca gagtgtccac
     4141 taagatattt tgtagcggcg ataactgaaa tatccactcc aagttctaaa ggatttagaa
     4201 aatatccact agaataagta ttgtcaatag ctacagggat attatgcgca tgggcaattt
     4261 tgcaaagttt tggtaaatct atgatttcat aaagtataga acctggactt tcacatagga
     4321 taagcttggt attaggtttg atttttttct tctacatcac ttgcatcagc ttttaaaaaa
     4381 tcaatttcaa tgcccatttt ttctaaaaat aattcgcaaa tcgttcttac aggcccataa
     4441 attgcatcag tgattaaaaa atgtgtatct ttgcttgcat agtttaaaag caccatagct
     4501 aatgctgcaa gtcctgttgg gaaaagttgt gctctataac caccctctag agtgcaaata
     4561 agtttttcaa gttcaaaatt ggttgttgtt cctctagatc cataacttaa aacacgatct
     4621 gtttttctta attctctgta tttttgccaa gttgcgtgat ctttaaaaag tatggttgat
     4681 gcacgcataa gtgtaggatt gactgatctt acttcagcgc cttgatcgcc tctgccacaa
     4741 tgaataagtt tagtttttga gttcattttt tctccttttt aaagatagat ataagtcata
     4801 ataacattta caatagccgc tacaagcata ggaatagctg ttcttttaac cacggcaaaa
     4861 ggacttactc ttgcaatagc tgagatagct aagatcgcta gtgcaatagg actaacacat
     4921 cttccaaagc ccgtcatgat ttgaatcggt gctatcatag tgatagtttc aactccaaag
     4981 tgttttgcta tatttgggat aagtggggca aagctaaaaa atgccgcatt tcctgaaccc
     5041 attaagaaag cacaaaccgc aagtaagatt gaaacagcga taataatagc caaaactcca
     5101 aatcctgcat ttttgcaaaa ttctattaaa gtatctacaa aacctacaga taaaagacca
     5161 cttgcaaata cttgaccaca aacgatgagt gaaactgtga taacaaataa atgtcccatt
     5221 cctttaaaga aaatcatcat agaattaaga gtttctacta tacttttata gcgtatcatt
     5281 tcaaaaataa tagccacaaa agttgaaatc accattgcta ctggaacatt cattttaatt
     5341 gcagtgctag cagctgcttt aacttcttca gcgctactta ttcccattaa aaccaagatg
     5401 ctatcaagca cggaactaaa tcctaggatt aaaaccaaag gaattatagg taaaatcgca
     5461 taaattctag gaggcttttt aagttctttt tctttacctt cattttcatt tagttctttt
     5521 ttcaatttct tgcgcattga agacaaaatt atcttttttg tcaaaaaatt tattgcaaag
     5581 atatattgca atacttacag ctataatgat aggcaaggtt gtagggagtt gataatgaac
     5641 aaaataaatt gcaggatcaa cttcagcttt ttctgaggcc atgatcacat ttccacttcc
     5701 aggtccatga tcgatatatt gacaaatagc aatcacactt aaggcagaaa gttttgaaac
     5761 accagagcgt acaagtatag gatacatagt aaccataagt aaaagtgcca agtctgcgtg
     5821 agaagggatg aaaagaacta aaaattgcac gataaaataa gcaactatga gtaaaacata
     5881 aggagatttt acggctttta aaggtttttc aaaaacttta aaaagtgcat aagaagcccc
     5941 tacatgatcc atataagcag aaaaacctgc tatagtcagt cataagtgta agtccaagct
     6001 ctactaatgt acttggacat ggtttgatta aaaacttgaa aaatatcaaa aaaacctaga
     6061 tttaaagaat ctttggtaac aatgtgtgga gaaagtccaa aaatagcagc taaggaaagt
     6121 aaaagcaagc cacttaaaag cagtgccatg tgagcattga tttttttata aagcataaaa
     6181 acaagtaaaa aaacactaaa taaagaaaaa acaataccta gcatatttta tcctttttga
     6241 gcgatgacct ctatctctac tttagctttt tttggtagat cttttactgc aaaagcactt
     6301 cttgctggat aaggagcttt aaaaaattca gcataaattt cattaaatgc tacaaaatca
     6361 ttaatatcag ctaaaaagca agtggtttta accactttat cataactgat accattttct
     6421 tctaagatag caccgatatt tttcaaagat tgtttggttt gttctttgat atcatggctt
     6481 tctatttcgc ctgaatcagg gttgatagga agttgtcctg atataaataa aagtccattt
     6541 acttctctgt aagctgagta tggaccaatg gcctttggat agtttgacat gaattctcct
     6601 ttgttaaata tagattaagc agaatgcatt ttatcactac aataataatt tgtcaatagt
     6661 ttattatcat aataataaaa ttttattttt aagaaatgtt ttaaagtata aagagtagaa
     6721 tttaatatta tattaatttt ttattgaagg cagttttatg gatgagggac aaaaacaaca
     6781 atttataaag ttgacatatt ttttaggaga agttttaggt gagcaatatg agatagtttt
     6841 tcatgtaatt actgaagatg gggcctatat tgcagcaatt gctaacagtc acattagtgg
     6901 aagaagttta gattctccct tgactgcttt tgcaagtgag cttatgcaaa ataaaaaata
     6961 tttagaaaaa gattttttat gtgattataa ggctcttgtt ggaaaatcaa aattaattag
     7021 aggatctact ttttttatta aaaatcatga caaattagta ggtattttgt gtatcaatca
     7081 tgatactagc attatgagag atttaatatg caagatgatt gatttagaaa aaattggaga
     7141 tatgggtgat attttaggaa atattagttt ttctcaaaat gattcaagta tagaaacatt
     7201 aagtcactcg atagaggata ttttagttca aagcgtagat tctagttatt taaattctga
     7261 ttatcaatta agcattactc aaaaagaaga aattgctgaa aagctatatg aaaaaggtat
     7321 ttttaatata aaaggggcgg ttcctatcgt agcaaaattt ttaaaaattt cagaacctag
     7381 tgtctatagg tatctgaaga aatttaaaaa ataactaaaa ttttttgata aattttagta
     7441 tttttaggct tattttcttt aaaaaattat ttttagattt tttgagtaaa aattctgcca
     7501 catctttgcg tccaaacata atagcaaaag tataaggtgt cattcctaaa ccattatttt
     7561 catcaatatt tgctccatat ttaactaaaa gttcacacat aggtaagtat cctttaaaac
     7621 aaactcccgc taatggggtt tgtccacgat cgtttttttc atctactttt gcaccttttt
     7681 ctaaaagcat tttagcgctt tcataagaat tattataagc tgcaagcata agcaagctat
     7741 cgcctttatg agtttttaaa tttacattta aacctgcttc tatcatgatt ttaagatttt
     7801 cacattcatt atttcttgca aaattaaaag ccattttgca aagctcttca aatctttttt
     7861 cttcttctaa actaagagtt gtcattgttt ttccttaatt attataatct ttagtttgcc
     7921 accaaaagtg gcaagtaaaa attatttttc taaagctttt ttaattcctt ttgcataatc
     7981 aggtgaaatt ttttcaaaat gttctaaagc tctagtgata attttttcat caactccctc
     8041 catagaagcg gcgatattat gaaaaagttg agttttttga tcatcattca taagattaaa
     8101 taaagctctt ggttgagtat aaaagtcatt atctagtgga gcatatcttt gtgctacgcc
     8161 ttctaagact aaatcaggtt caagatagct tttgtcttct tttgggctat tatcatagct
     8221 gtttggttca taataagctg catcattttt ataactatca aaattcatag caccagcgac
     8281 attgtaagta ttcacttcgc tttttgcacg atttacgggc aaaagatgat aattagttcc
     8341 tattctatat ctttgtgcat caggatatga aaaaattcta gcttgcaaca ttttatcagg
     8401 gctaaagcca attccaggaa cgatattgct tggactaaag gcagcttgtt caacttcatt
     8461 aaaataattt tgaggatttt tgtttagaat catttcgcct atatccatca aaggcacaag
     8521 actatgaggc caaatttttg ttaaatcaaa aggattaaat ccaagttttt ctatatcttt
     8581 ttcagcaaga atttgaactt gaactttcca ttttggaaaa tctttatttt ctatagcatt
     8641 atagagatct ctttgatgac tttctctatc ttttgctata agctcggcag cttcttggtt
     8701 ggtaagattt ttaatccctt gttgggtttt aaaatggaat ttcacccaaa atctttcatt
     8761 tttatcatta ataaaactat aagtatggct tccaaatcca tgcatatgac gataacttgc
     8821 aggaattcct ctatcgctca taagaatggt tacttgatgt aaactttcag gacataaact
     8881 ccaaaaatcc caagcagcat tattacttct tagatgagtt cttggatctc ttttttgagt
     8941 atgaatgaaa tcaggaaatt tatacgcatc acggataaaa aaagttggag tattatttcc
     9001 tactaaatcc cagtttcctt ctttggtgta aaatttaatg gcaaatccac gtacatcacg
     9061 ctcagcatct gctgcacctg cttcacctgc aacagtagaa aagcgtagga aaagaggagt
     9121 tatttctcct ttttgaaata tttttgcctt agtataagca gataaatcag cggtgatttt
     9181 tatttctcca taagccccac ttcccttggc atgaacggtt ctttctggaa ttctttctct
     9241 attttgatga gcaagttttt caagcaaaag ataatcttgc ataagcaaag gtccttttac
     9301 acccgcgctt aatgaatttt ggttatcggc tataatgttt ccaaaatcgt tagtcaattt
     9361 tttcattgtt ttctcctaaa ataataaatt ttatcaatta gtaaattata tctattaaaa
     9421 attaaaatta actgaataat tgcattttat tgataataaa tttcaaaata aatttagttt
     9481 ttttatatta taataataat tatcaaaata tattttaaaa atcacaaagg agaatttatg
     9541 tcagttttgg ttattggtgc agatgaaatc actcctatta gagctgtttt acatgattta
     9601 ggtgctaaaa aaatagaaca ctgggatgcg cgtaatgaaa atagagttaa tcgcaagccg
     9661 attccttgtg atacagaatg tatagtaatg ttaacaagct ttttaaatca taatactatg
     9721 aaaaaaatca aaaatgaagc taaaaagcgt aaaattccat tagtttgtgc aaaaagaagt
     9781 gtaagttgtg tgtattgtga atattgtaaa atttttaatc ttaataaaga attttcttgc
     9841 tataaaggtt aaagatgtta tttggatttg atgataagca agaatttata ccgcaaattt
     9901 atcgctattt aaacaatcaa gagcttatgt tgactttttt aactcaatat aatgcgagcg
     9961 ttgatagcgc tctaaaaatt cctctttcat atgcaaaaaa taccaagagt ttaaaaatga
    10021 tatttggaaa ttttttacat gatataatgc atgtttcatt tggtaagatt caaaatataa
    10081 atatcaagct taatgcatac gctttttact ttcaaaaaag aaaaagctta atttttaata
    10141 ctaaaatatc taagaatgtc gatcttttaa gacttttaag aatttatctt tatggcattt
    10201 gttttgatgc gcaaatttta tttagctctt atgtttatga taaggtttct tttcaaaata
    10261 atggaaaaaa tatagatcaa gatggtgatc ttattataat agataagaaa tttgcaattt
    10321 taccactttg caaagagatt aatacacata atttaaaaat tgaaaatgaa attcatggat
    10381 tattgaattt gataaaagaa aacaattttg aaaaatttta tattgtttgt ccgcgtaaca
    10441 aaaatttcac acattttatt gaaataaaac attttttgtg tgatttaaac aaaactatgt
    10501 taaaattagt tccgtataaa atatcaaatc aaattataag gagaaaataa tgtcagtagc
    10561 agtaatctat ggtagtgcta tggggaatac agaaggagcg gctaatacaa ttgctttaaa
    10621 acttggaatt agcgatgttt ttaatatctc agatattgat gcagctaaaa taaattctta
    10681 cgataaatta atttgtggaa cttcaacttg gggaagtggt gatttacaag atgattggga
    10741 tggttttgat ttttcagggc ttagtcttgg tggaaaaacc gtagctgtat ttggtatggg
    10801 tgatagtgaa agttattctg atactttttg tggtggcatg ggtaaattag ctcaaaattt
    10861 aaaagatgca ggcgcaaatt tggtaggaga agtttcaact gatggttata catttgaagc
    10921 aagtgatgcg gttgtagatg gtaaatttgt tggacttgct cttgacaatg ataatcaaga
    10981 agatcaaact gaatcaagaa ttgatgcttg gatagaacaa atcaaacctt attttgctta
    11041 ataattctta aaatcaagag tttttatact cttgattgtc tttttcttaa aaataaaaaa
    11101 aactcactat ttgatttata attttatttt ctaaagataa ttgacagcgt tctttatttc
    11161 caagataagc tgttcttgca agaagacttg ttttttgaga attgtgattt ttagagttga
    11221 tttgtaaatt aacttgcata gtatagtagt tttctaccat ccattctcca tcgctttcca
    11281 aaggatcaaa atcataaaaa aatcttgctg aagttgtgat tttttgagca taagaatgct
    11341 ttttcatatc tacaagattg attaaaattt cataatctgc attctctttt acttctttta
    11401 agcctaaatt tttaagtttt aaagtcaaat ctctatctag agtagtttga agttgactag
    11461 gattttgaaa ggaaatttta aaactttgtt gtttttgtga tctgataaaa atgccttcat
    11521 tgcttgtttg aataaagctt tgtgtgaaag ttgcattggt gcaagcactc ataaagagtg
    11581 ttataaaaaa gcttaaaatt aaagtaattt tagacattag gtttatttaa taatagttgg
    11641 agtagcgcta agacctaatg agcgatattt ttcatataag gaaaaaactt cttttaattc
    11701 tgcatcgctt acttttggat aatttttgat atttgcatca tagtatttgt ttaaaattgc
    11761 gattttttct ttatcatttt ttgctttttt tgcttctttg tagattagag cggatttttc
    11821 aaaagcagat tttccatgta ctggagttaa aatataatta acttgatagt ttttaagttc
    11881 attatcaatt tgagctaaat gttctctaca ataagggcat tcaggatccg aaaaaacata
    11941 aattgcaggt ttatttttat ctcccaaagc tattaccatg gtttcttttt gtgctacagc
    12001 tttagcattt tttgtaaaat tttctcttgc ttcttgaaat tttttcattt catattcttg
    12061 agcataagaa attcccgttt tcaagtcgat aagatcaggg gtaataagac tatcttttgt
    12121 aaaaagaatg ttttcttgtt tttgtccatt taattcaacg cttacaataa cactttcaaa
    12181 acccgtatta ccaacctttt gacgatttga tacactaacg gtagtatttg gaaattgtgc
    12241 tttaatgctt tttgaataaa aatcactaat ttctgaatta cttgcagcaa acaaagatgc
    12301 tgaacaggca agaattaaac ttaatttttt catagtttac aaatccttta aataaattat
    12361 gtttaattct ataatgattt tctaaatgtt tgttaaaaat cttttttcag cttctttgct
    12421 tacttgagga aatttgtcta agtattctaa ataagcaata gcatattttc ttgaaagatt
    12481 gaaatattct ttcatacttt gcacatcaag actttgattt tttaataaat ttaaacattc
    12541 ttgcataagt ttttcaagag cttgtttttc tataaaaaga ttgtgtgaaa gtcttacaac
    12601 taagcctttt tgggtaagtt ttttgagtat attatctccg ctttttctat caagttctaa
    12661 aaaatcataa agattataag gagcttcggg tttaatacct tgttttttta aaatttcata
    12721 catttggtta ttgttttttt cttgaagttt ttcaaaatct atgccttttt taaaataaat
    12781 tccattttga aaatccaata aatttgacat ctctttaagc ccgagttcgc aaaaattttc
    12841 acttgcccaa gtaatcctta aagctaaaga atgtgctgaa agcatggcat aaggattttt
    12901 ttcaagtatg aatttgatga aatttttaat ttcttctaga ctttgtaaat gatatacatt
    12961 aagatttttt tcatcaacaa atacttgatt taattctttt gctaatttca atgctttttg
    13021 atgagaaagt ttaaatctct gataacttga aagcaagcca aagccgtatt tgtgtgcgtc
    13081 ttttaagaaa gaaaaagccg ctttaaaatc tttatttttc aaaaacatta aaaatttatt
    13141 tttttgttct ttttttaaag gttcgcttaa aggatttaaa accttaccac cgcctataac
    13201 acgattgttt tgtaataaaa taaaagcctc atcaaaactt aaaaatacat ttttatcaaa
    13261 actaaaatgc acaaaaaatt catcattttc tagttttttt aatatattta ttttgcattc
    13321 tatttgtctt gaacccacgc aaaaaatcat tttgctattt tgtaaatttt ttgctttaac
    13381 taaagcatcg cattctttaa aggctttaaa ataacctttt ttacttagta aataaccttt
    13441 tttcaactct ttataatcac aatttaaact taaagccaca cggttgcaag ctttgatttg
    13501 ctctagattg gtatcgtgat tttgtatatt tttaacaatg agttcttttt gagtgtctaa
    13561 acagatgatt ttttcattta aagtgatact tccttcattc aagctgcctg taacgacagt
    13621 tcctatacct tttagagaaa aaactctatc gatataataa tgaaaaatca gttcttcatc
    13681 attttctttg ttttctatgg tataaagata attttttaat tcttctatgc cttgattatt
    13741 ttttatactg gtatgaaata cttttaaaat gggataatct aaatttttta actcttctaa
    13801 aatttctaca cttttttgct ctatgttttc acaaagatcg catttgctaa gtactaaaat
    13861 gatattttta atatcaagaa tttttaaaat ttctaaatgt tctaaacttt gttcttttaa
    13921 accctcgtta atatctacga caaataaaca aacactaaag ccaaaagctc cacttaccat
    13981 agttttaacc aaatctttat gtcctggaac atcgataaaa gaaatgtttt tatcttttaa
    14041 tttaagattt gaaaaactta aattaatggt gatttgtctt tcttgttctt cttttaaact
    14101 atcgccttca aaaccattta aagctttaat gagtgaagtt tttccatgat caatatgtcc
    14161 tgcggttcct ataataacag atttcataag ttttccattt gattaattgt aagaataagt
    14221 ttttgaagtt cattttctcg tatagttcta aaatcaagaa caaattcatc attttcaatg
    14281 cgtcctatga tattttcttt tctaaatcga gtttgtagtt ttaaagcatc tccttgaaaa
    14341 gttagtatat aagtatctaa acttttatca ggcatagaac ctcctcctac taaacttttg
    14401 ctttttttga gttgggtttg aaattttaat tctttttgca ctcttaaagc tttttcttct
    14461 ataaaggata agtcatcatt taaaagtttt aaggtaataa ttttttcata atctttttgt
    14521 aaataagctt ttaagctttc atttaaaaaa gatagggtta atttatccac tcttagcatt
    14581 cttaaaagtt gattttgttt aagtttttct atgagttctt tttttccaag tataatgcct
    14641 gcttgcacac taccaaaaag tttatctcca ctaaaactta aaatatcaca ttcttgtacg
    14701 agttttttga ttttaggttc atttttaatc agcttttcat ttaaattttc acaccagcca
    14761 gaacctagat cataataact caaaagccct ttttcttttg ctagttcatg tagatctttt
    14821 atatttactt cactatgaaa acccataaga gcgaaattag acttgtgggt ttttaaaatt
    14881 agagcggtat tttcactgat agcttgttca tagtctttta agtgtgtttt gttactagtt
    14941 ccaacttcgc aaagctttac acctgcagct tttatcactt caggcacacg aaaacttccg
    15001 ccaatttcta caagttctcc tcttgagctt atgacttctt tatcataaca aagagaatta
    15061 agcactaaaa aaactgccgc agcattgtta ttgaccacta aagcatcttc gcattcaaaa
    15121 agcattttaa gtttttctag caccaaagca tagcgagagc ctctttttcc attttctaaa
    15181 tcaaactcta cattagaata attacaaatg atatttttac acgcttcata aagttcttca
    15241 tggattacac ttctgccaag gtttgtgtgt ataaccactc cgcttgcatt aatcacactt
    15301 tgtaaatctt tgcgataaaa agttttgatt tcttttttga tttctaaaag tagtttatct
    15361 ttagaaattt catcttggga aaaattttct tttagttttg tgacaacttt tttacaaaaa
    15421 aatgctttga tataaaaagg ataggatttt aaactctcat cttcaataag agtgttaatt
    15481 tgtggaaaag ttctaaattt gttcatctta agccttaaga aaatatttgg ttattttaac
    15541 atagaattta taaaatgatg ttttaaagag attaaggaag acaatgcaag attttgttta
    15601 tataaaaaat gatgttttaa tccctttgcc agatgctatt gaaattttag atcaggcaaa
    15661 tgataaagaa gcattaattt gtaatgataa aaatcaaaaa gcgcaaattt atgcccctga
    15721 gattaatttt tatcttaaaa attctcaaga tgaaatttta gagcaaagta aaaatgtttt
    15781 aacgctttat aaagcaagag ctagcgttta tgatttgggg cttgatttag aacaaagcaa
    15841 agaagtgcaa aatcgtttga ttttagtaga tagcgatact caaaccgtag agtttttaaa
    15901 agaacatgga tttaaggtta ttgctttaag cagtgcagaa attttagctg tttttggaag
    15961 tgtaggggaa ctttgtgctg tggttaaaaa tcaaggcgaa gaagtggaaa tagattttga
    16021 ttttttgctt tttaaagcta aggatttaag cgttgtgcgt aaagatttta caagacaaag
    16081 tggatgttat aatcttttaa attttgaaaa tcttgaagta ttgttagagt ttttgcaaag
    16141 caaaagtcca aaatatcatt ataaaactta tattagctat aatgctagcg tgtgtcaata
    16201 ccacgaaaga cgcagtgagc attgtgcaaa atgtgctgaa atttgtccta ctgtggcgat
    16261 tttaaaagat gatgaaaaaa agcatttgga attttctcaa gtggattgtt tgggttgtgg
    16321 aggatgtatt agcgtgtgtc ctagcggatc gcttgattat gctcctatgc caagagaaag
    16381 tttttttacc ctttgtgagt tttataaaga taaaaaaatt ttaattattc ccaaaaaaat
    16441 gtctttagaa aatttaaatc ttgctttacc aaaagatgtt ttacccttta tgatagaggg
    16501 tgaaaaatgg ctttcttcta tgcatttttt aacgcttttg caaaatagtg gagcaaattt
    16561 ggttttttat acggattttg tatctcgtgg tagcaatgag gctattgtac ttttaaatac
    16621 tttttttgag agaaaatttc aaaaaaaagc tatttttgtt gctaaagatg aaaaagaatt
    16681 gcaaaatgtt ttaaaagagc aagaattcat acaagattta aaatatgatt ttcataataa
    16741 caccttaact acaagagaaa attttgccaa aagaatgcag aaaatgataa aaaatgaaga
    16801 ttttggcagt atagaaagtg gtgaatggtt gcgttatggt aaggtagaaa ttaatcctaa
    16861 cacctgtacg ctttgtcttt cttgtgtggg tgcctgtaat gtaggagctt taatcgctga
    16921 taaacaagaa aatgctttga aatttaatgc ctctctttgc acgacttgtg ggtattgtga
    16981 gttaagttgt gccgaaaaag atactttaaa attagttcgt agtggaatgg agtttagagc
    17041 ttcttatttt gaatatcaaa ccatggcaaa agatgagctt tttgcctgta tagaatgtgg
    17101 taaagaattt gccaccaaaa aagctgtaga aaaaatagcc aatttaatga aacctaaatt
    17161 tggtaatgat gaaaataaaa tcaaaacact ttattgctgt gcagattgca aggcaaaagt
    17221 gatgataaaa gcaatgggtt ttgcggggca aaattagatc ttaattttgc cttctaattc
    17281 ttctttattt gtaagtttgc tatcaaattt aacaacaaga tttttagagt ttttataaat
    17341 atctacaacc cctaaatttt cactaaaagt actgaaattt aaaggtgttt ctaaaggtag
    17401 ataaaggttt ttaaaatcag ctggattttt taagaaaaat aatgctacaa gccaaattag
    17461 agctaaaatt actaaaataa tagctaaaag atttaaggca tctagatgta aaaatatccc
    17521 tccgataata ccacctataa aacttccacc atatccaaaa gcattaaaca accctaatgc
    17581 cgcacctttt tcatgaactt tacaaaattt tgatgcacaa ctttgcataa taggctcatg
    17641 taaattaaaa cctataaaaa aaatcacaac tgctatgata aaaaaatcta tagaattact
    17701 aaaagcaaag aaaagataag aaagtatgaa aaaaacaatt cctaagagta aaatttgttt
    17761 agctaaacct cttttttcgc ctaaacttcc agcaaagccc atagcgataa aacctgctac
    17821 catagaagcg ctataaacaa tccaaagttt atcagaagca aagcctaaat gttttactag
    17881 aataatagga atacttaaaa atgctatact cataagcatt ttttgcatga aattagtaag
    17941 attcataagg gctaaatttt tttgtttaat aagatgaaaa aaaggagttt tttcattttc
    18001 atgagtgatt ttattttctt taggtacaac agtataaagt aaaattatac ataaaagaga
    18061 caaagctaca ctaagatcaa aaaggctaga taaaccccat tttacactca ttaaaggaga
    18121 gattaccata gaagctgcaa aactaagtcc tataaaagaa cccattaccg ccatggcttt
    18181 accacgattt tcttctgtga taaaatcact tatcattgcc gtagctactg ctccaatggc
    18241 ccctgcacct tggagcattc ttcctaaaag catggtgtag atattttccg caaaagagca
    18301 gattaaagag cctattataa aaataatcag tccaatgagc atggtttttt tacgaccaat
    18361 tttatcactt aaaatcccaa aaggcatttg taaaatcatt tgggttaagg cataaacacc
    18421 aactaaaagt cccactaaaa attcattagc accttcaagt tttaaagcat aaagacttaa
    18481 aactggcaaa actataaaaa gcccaaaaaa ccttgttcca actatgaaag ataagggtaa
    18541 gacattattt agcattatca atttcctatt aaatttgaaa tttaaattag gataatttta
    18601 ctatgaaatg gattaagcat tgattaacat cgctttatca tttgatattt aaaagctacg
    18661 cacaaggata aattttataa aatcatattt ttgttttgat attattttgg agcttttgtt
    18721 atgaagatta tcctagctac gagtaataag cataaggttt tagaacttaa agaaatttta
    18781 aaagattttg aaatttatgc ttttgatgaa gttttaacgc cttttgagat tgaagaaaat
    18841 ggaaaaactt ttaaagaaaa tgctttgatt aaagcaagag cggtttttaa tgctttggat
    18901 gaaaagcaaa aaaaagattt tatcgtttta agtgatgata gtggtatttg tgtagatgtt
    18961 ttagaaggaa atccaggaat ttattctgct cgatttagca gtaagggcga tgataaaagt
    19021 aatcgtgata agcttgtaaa tgaaatgata aaaaaaggtt ttaaacaaag taaggcgcat
    19081 tatgttgctg ctattgctat ggtaggtttg ataggggaat ttagtacgca tggaaccatg
    19141 catggaaaag taatagatac agaaaaaggt gaaaatggtt ttggctatga tagccttttt
    19201 attccaaagg gttttgataa aaccttagcc cagcttagcg tggatgagaa gaataacatc
    19261 tctcatcgtt ttaaagcttt agagcttgca aaaatcattt taaagatttt aacaaaagga
    19321 taaaaatgaa aaatttttta aaatatatag ctattattgt tttaatatat gctctttatg
    19381 ttggtttgga aacttggctt tcttagaata aatagtgatt aaaaagcttg gtaataagaa
    19441 caaacttcca cttaaaagca aaatcattac aaaaacggtt aaaattccaa aataaatcgt
    19501 tggaatgaaa ttactactca tcataacact aaaacctaaa actatgctaa tggtagtata
    19561 ataaagtgcc gaacctatac taaggtgaga aatcataatg gcttcttcta ggcttttgtt
    19621 tttaatttct tctctaaaac gataaatata atgtatagca tcatcaacgc ctatacctat
    19681 agcaatagca gctatagtaa tactcatcat atccaaagga atgcctaaaa gtcccataag
    19741 agcaaaaacc acacttaaag gaataacatt taccaatata gccgcaactg aaaattttaa
    19801 atccctaaaa acaatgataa aaagtatgaa aatagctaaa attacaaata taagagtatc
    19861 aaattgcgat gaaaaaagac tttggagcat attattataa agcaccatta tgcctgtgat
    19921 ttgcacttct actccatcgt tttttacaag ctcgttgagc tgttttttaa gatctattaa
    19981 aaacttatta cgtcttaaat tcggatcaga atcaacaata cgcatactaa atcttaactc
    20041 gttattctct atacttacaa aaggtgaaag caagtcttgt ttaaatttag caggtaaatt
    20101 ctcatttaaa aacgcaagag caaaatcatc taactctttt ccatcgttga tatttttccc
    20161 tagggttaaa agactattaa gacttaaaac cgagcctaca aattctttat tttctaaaaa
    20221 ttcatgaact ttttttgcaa tgcgtgtttt tttagagtca aaccaataag tttcttgtgt
    20281 ggctaaattt tcaaattcgc tttcaaaact atcaagagta ttgcttgtat tttgatcgtt
    20341 tttattattt ggaaaacgaa tgatgacttc taaaggcaag gttccaccta ggtttttatc
    20401 aataaccaaa agtccttttt tgatttcact gcgatctttg aaataattga caaaagaatt
    20461 ttcaactctg agttttgaaa tgcctattaa agctaagatt atagcaagaa ctgaaattcc
    20521 ataaatcatg tgacgctttt tagaatcaag agcggtttta gcacaaaagg ctaaaagatt
    20581 aaatttaaac tcttttttat gatagttttt tggttttaaa agaactaaga tacttgctaa
    20641 aaataaataa ctaaagataa gagctaaact tatacctata ctcatcataa taccaagttt
    20701 tatgataggt tcgatatttg aaagcattaa agaaaaaaat cctatcatcg ttgtaacaat
    20761 ggcataaagg ctaggatttg ctttggctag taaggtttca agtactatgc gctcaacttt
    20821 agctttggga tgattttggg tactttcgat aaaatgcgtg atcaaatgaa caactacact
    20881 taaggtgata attaaaacca aagcaatgta atttgatgaa ataactgtga tttgaaattt
    20941 taaaagtgca aaaactccac tagctgcact taagcttata aaacaaataa aaagaggtaa
    21001 aaaaacaaag cgccatgaac ggaaaaaata ataaagtgca agtcctagta aaaatacaag
    21061 agaaacacca tagagcacaa gatcagattt tatataagct atcatatcat cagcgatcat
    21121 gcttacgcca ccaaggtaga gcgtatcttt atttttttca taatttcgaa ctatgctttt
    21181 aatagtatct agactttgtt tcgtgataac tttttgcttg tcttgatgtt tttttatagc
    21241 aagacgaatt tgatcttttt ctttttcatc ggtagcaaga tcgcgttttt ctacaagatc
    21301 attataaact gtatcaggct ttaagtaaat aataagccct gttacttttc catcttttga
    21361 gatgatatta tttttataaa aggggctatt taaaatttca tttcgggctt ttgtgcggtt
    21421 tatatcttgg ctttctatgt ttgggatatt ttttaacagt tcttttaaat ccgtattttg
    21481 tgaactttga agcaaagggg cattgatgat gctaaaaacg cgctctacta aaggggcctt
    21541 ttctaattct tcatgaagtt tttttaattt ggctaaattt tcatttgaaa aaggtttttc
    21601 atcatagggt ttgaaggcta aaagtaaaaa attatcactt ttataatgtt ttgaaatttc
    21661 tctaaaagtt tttaaatctg catcatcttc taaaagtaaa ctttcagcac ttgcatctac
    21721 gctaagctta aaagcaaaaa ggcttaaaaa caggcatata aacaaggttc caaaaaaagt
    21781 actttttgga cgagaaataa aaaactttaa aagctttgca aacattattc tatgacaata
    21841 ctctcaagtt tttgaagtag ggcatcaaag ccttggttgg ctaaaatatc tccaaattgt
    21901 gatctataag tttgtactat actcacacct aaaacatcta catcataaac aagccagttg
    21961 ttattatcat tgtaaaattt gaaaatgata tttttttctt ccccatctac taccatagaa
    22021 gtggttaaaa aatagcgttt ttcatttttt aactcaccat ttttgacctt taaaacctga
    22081 tctttataaa gactgagttt atcggtaaaa ctttttttaa gacttgcttc aaaggctgtg
    22141 gtaaattttt cttgttcttt tggatttaat ttagaataat ttttcgaaag actgagtttt
    22201 gccatgagtt tataatctat tatgctatca aaaagtttaa aaattccatc agcagcttgt
    22261 tttttgtctt ctttgctatc ttgtaaaagt tttaagcttg catcaatgtt tttttgcata
    22321 gtactagaaa tttcatctag ctgtaaggca aaagcattaa aaaataaagc caagattaaa
    22381 aatatttttt tcattatttt cctttatttg ctaagttcat tgcgtctttg ctcgtaagca
    22441 tcacgcaaga atggatataa attaggcgtg ttgtgataaa tttcatcaat ttcatcaagt
    22501 ctaaaactaa gttcattacc aaatccataa gcacttatag ctatacttgc ccaagtagga
    22561 tcaatgtaag cagtaaaact tgcataccaa gttgcaggta aagcaagagt atctctaaga
    22621 ttactagggc cgagtatagg taagacaata tgaaaaccgc ttcctacacc ccagtgagcc
    22681 aaaacggttc ctaagtccgc gggatgtttt ttaagaccca tttttgatgc cacatccata
    22741 agtccaccaa agcccataat ggtattggcg gtaaatcttt taaattcttc tcccgcttct
    22801 tcaaatttaa actgcaaaat attgcctaca aaacgcaaag gagcaagtaa attatcaaag
    22861 aaatttctta cccctaatct tataaattca ggagtaatag tgttatagcc tttaagaacg
    22921 ggacgcaaac cataatcata caaagccaca ttaaaacttg tcatagcttt gttatatcct
    22981 gaaagtggat cgtttacttg atagttttgg tattcttgtt cgaaatcatc taaattttgt
    23041 tctttagcaa aagcaaaaat agcaaaaaaa attaaaataa aagatataaa ttttattctc
    23101 aagcaaaaac tcctaaaaat tttaaaagta aaattatagc aaatttttaa tcaaggttta
    23161 tatcccagta aaaatccacc cattcagtag cttcttttac tttaaaatca ggctctaaaa
    23221 gagcggtttt tttgtaaaaa atggttgtaa ttttaagttc tatatgagga aatttttcaa
    23281 gcaaaacttt ttttatttct gctaaacttt ctccactatc tactatatca tcaatgagta
    23341 gaattttttt gtgcttgctt aaatcaggaa tgttaaaaat ttcaatagta tcaagttttt
    23401 tcgtattatc gtaatgaatt gagtttaaag caaaaagttg acgcgttttt aaagccactg
    23461 ctaaagagtg tcctaaactc atcccccctc ttgctatagc taaaagtgca tcagggttaa
    23521 aatctttttt aatttcttta gcaagaattt ttacatcttc tttaaattct tcataggagt
    23581 aaaatatcat tatatatcct tatttattgt agtgccataa gtaaaaaatt acccaaagat
    23641 aataaactta aaactataat gccaagattg attttatccc attcgcgttt aaaaattcgt
    23701 acaagtaaat aagaaagaaa accaaaagca aaacctgtgg tgatggagta agtaaaaggc
    23761 atcatgataa tagtaaaaaa gcttgctaca gctatagcac tatctttaaa atctatattt
    23821 ttaacttcca taaacattaa aattccaacc attacaagta cggggtatat tgcgtttgca
    23881 ggaatggctt taaaaagtgg cagtaaaaaa agtgtaaaag caaaacaaat agctacaact
    23941 aaagctgtaa gcccagttct tcctccgctt tcaacccctg tagtgctttc aacaaaggct
    24001 gtaactgtag aagtgcctgt catagctcct aaggctgatc ctgttgcatc tgccattaag
    24061 gttttgctta gttttttttc tccatttttg ggatcatcaa aaatctttcc tctttcaccc
    24121 acacctgtga tagttcctat gctatcaaaa agttgagtga taaaaaaagt aagaattata
    24181 ggtatcatag taatatttaa ggcacttttg atatcaagtt gtaaaaagat ggctcctaaa
    24241 ccattttcca tgctaaaatt tggccaagaa aagatttgca caggaaaact tgcattgtct
    24301 aaatggaaaa tccaagcaat aatggagctt gctaataccc ccaaaataaa agctccgcga
    24361 agttttatag cccaaaaaaa gatgattaaa gctagagtga aaattccaaa aagcacatga
    24421 gggcttttga aatttcctat gctgactaag gtatctttat tatgcattat cacacccatt
    24481 tgacttaagc ctaaaaatgc aataaaacaa cctatgcccg cacaaattgc aaggcgtaaa
    24541 tcttttggga tattgcggat tacccaaagg cgaaaatgcg taaaagaaag tatgagaaaa
    24601 ataatacttg aaataaaaac agctcctaag gcactttgcc aagctatgtt ttgacctaaa
    24661 caaaccgcaa aggtaaaata agcatttaaa cccattccta cactcatagc tacaggagta
    24721 ttggcaaaaa aagcattaaa agcacttgca actatggtaa ttaaagctgt tgcggtgatt
    24781 aaagcttcta taggcattcc tgtatttcct actatgctag aatttacggg gataatgtaa
    24841 accatagcta aaaaagtagt aagtcctgct ataacttcgg ttttaaaact cgtattgttt
    24901 tctttgagtt taaaaaagct cattttttct ccttagtagg tttttagctc attgtataaa
    24961 ctatcgcgtt ctacaggaat aagatttgaa gtttttatca tatcgataaa agtttttaaa
    25021 cttgtgcctt tggcggactt tgcaccacct gcactttgta tactttcttt ttctatagtg
    25081 ccgtctaaat cattagctcc aaattcttgt gctaccatgg ctaaatttaa agtcattgtt
    25141 gcccagtaag ctttgatatt tttgatatta tcaagcacta aacgagaaat ggcaatggtt
    25201 tttaaaattt cttcactatc catgatttta tcagtttgta taaagctatt atccctttgc
    25261 caaactagag ggataaaagc attaaatcca ccggtttgat cttgaagatc acgcagtctt
    25321 aacatatgat cgatcctgtg atgtctttct tctatatgtc caaaaagcat ggtagcatta
    25381 ctttgcttgc ttttttcatg ccaaagttta tgaattttaa gccaattttc actgctaact
    25441 tttccatgac aaattttctt acgcacttct tcatcaaaaa tttcagctcc accgcctggc
    25501 atggaatcaa cgccgtattc aagcattttt tctatcactt cttcataact cattttaaaa
    25561 cgacgatgta aaaaatcaat ttcagcagca gtcatagctt ttacatgaag attaggatat
    25621 ttttctttta tcattttaaa aatttctaaa taccattgcc aagttgtatc tttgttgtga
    25681 gctgaaacga tatgcacttc tttggtttct cgttttacag tttcatcgac gattttcatg
    25741 atttcttcat gagtcatcaa ataaggatta ggattttttc ggtgcgctga aaaggcgcaa
    25801 aatttacagg tgtctgcaca gatattagtt gggttgatat ggcgattgat attaaaatag
    25861 actttttttc catgaagttt agtgcgtttt ttgtgagcgt atttgcctaa ggtaaaaaga
    25921 tctagatccc aaagtgcatt ggcttcttct tggtttaatc tttcttcatt ttctagtttg
    25981 gtgattaaat ttttcatttt aattttactc ttttgctgtt tttaaataaa gcattataat
    26041 ttttgcttac tgaaaaagag tttatagaaa aagccaaaat aaaagatatt tttgttaaga
    26101 ttattattaa gatattaaaa ttttaaagag agtagaaatt ttgttaaata aagaattaga
    26161 aatttttaaa aaaaatctta gttcctatac ccaaagttgt agaaaatttt ttcttaagca
    26221 aggggcgttt agcttatatc attctaaaaa tatggataat ttcataaaaa aagcttatga
    26281 tatagttctt aaagattatt ttgatgattt ttcacctcca agtgataata tccctttttg
    26341 tgttttagca agcaaagcat atgcaaataa tagtctttgt tttaatgaaa gtatttcttt
    26401 gatttttgtt tataaagata ttaaggcttt tcatttaaaa cctatgatta aggcttttat
    26461 cgaaatttta aatgatgcgc atttgcaaat tgattcggtt atcttagaat ttaatggact
    26521 ttataatgct agcaatgagc ttaagacttc cataatacaa actcgtttca tatgtggttc
    26581 taggatttta tttaaaggga ttaagataaa atttgagagt attataaaag aaaataaaaa
    26641 tgattttgcc aagcttttgc tagaaaattt taaagaattt gacattccat ttataaagca
    26701 agaatttaat atcttaaaag attttggcgg attaaatcat ttaagatctt tagagagttt
    26761 gcttgttctt tttaagactt ctccaaaaaa ttatgcttta aattttatag atgaaaaaaa
    26821 tttaagcgag ttgcgtttag ctggagattt tttactttct ttaaaatcag cgatgaattt
    26881 attaagtgct aaagatgagg atgaattttt acttattaat gttcatgatt tgagtgaatt
    26941 aatgtataaa aaagctaaaa aacattttgg agcaaatgag ttgttggttc aaaaggcttt
    27001 gcaaagtatg catactatag gtttttatac acacttttta gcaaagcaaa ttcaagatgg
    27061 attaaatcat actcttaaac aagaatataa atttaaaact cttgtggaag ttttagaata
    27121 cttattaaaa cttgaagata aacatgttat tttcgatctt aacttggttt ttgccctaag
    27181 aagattgaaa tacggtaaaa aagatataga aaaagcttta atactttttg agaaaatttt
    27241 ttataaaagg catagttttt gtgttttaaa acttttgctt gatagtggaa ttttaaaaga
    27301 tttatgtaag cctttttgga cagttcgttt tttaagcgat gaagaaggaa attatagttt
    27361 tgatgagcaa gtttttctta tgttaagtga atttgaaaaa tacgaagatg agcttgagat
    27421 actccaaaaa cttaaaaccg atgaaaaaat gattttaaag cttgtgatac ttttaagcgc
    27481 tatagaaagt gaaaatgaaa tttctttagc aggcatatat agagcgtatt gctctaaatt
    27541 tgatttaaag aatgaaattt tagaatgggg tcttaagata tttaaaaaca ataatgcctt
    27601 aaaagatctt gtagaaaaag aagatatata caatcctatt gttgtaagta gcttggtttc
    27661 taagctagaa aatttagaaa atttagagct tttatatact ttaacttggc taaaggctaa
    27721 ggctttaaat tataatgctt tttattttag agttcttgat aaacttttag aaaatgcaaa
    27781 acaaggtttt gaagatgaaa atctacttga agaaagcgca agaagagtaa aaaaagaatt
    27841 aacacttaaa agaagtaaga tttttttaga gcaagatgaa attttgcaag ataaaatcat
    27901 acatatcaaa tcaaatcttt ttattataaa aaatactttt gaagatattg ttatgatttc
    27961 taaattagcc aaagaaaatg attttaaatt ttggtttaat aatgaaacaa atcttagttt
    28021 gcaaattgtt gcaccacttc attttaatat tgccattatt ttaagttctt taacaaattt
    28081 aaatcttatt ttcatgaatt tttttgaact ttttgataat aaaatttatt taagatttga
    28141 atatgataat attatcagtg atgagcaaaa actaaaactt tgcgagcttt taaattcaaa
    28201 tctttctggt tttaatttga aaaaaattaa aaagccaatc attaaaaaag atgagttaaa
    28261 attagactta aactattcta aaatgtatgc caaattaggt cttaatacga aagatcagca
    28321 gggtttaatg gcgtatttga tgaatgtttt taatgaactt gaacttgttt tatgtgcagc
    28381 aaaaattcaa accataagac aaaggacgcg taatattttt atttttcaaa agaatgaaaa
    28441 attagaacat agcgagcaaa agttagttaa tttattaata agtgagtaaa aaaatgtgtg
    28501 gaatcgtagg ttatatagga aataatgaaa aaaaacaaat tatactaaat ggacttaaag
    28561 aattagaata ccgtggctat gatagtgcgg gtatggcagt gatgcaagaa ggcgaactta
    28621 gtttttttaa agctgtagga aagcttgaaa atttggcgaa taaatgcaca gattttgaaa
    28681 gtcaaggtta tggttttgct gtaggtcata caagatgggc aactcatggt aagcctactg
    28741 aaatcaacgc acatcctcat ttaggacagt attcttgtgt gattcacaat ggtattatag
    28801 aaaattataa agaaatcaaa gataaacttg aaaaagaagg cgtgagtttt ttaagtcaaa
    28861 ccgatacaga agtgattgtt cagctttttg aattttatgc aagaaatttg ggagtttttg
    28921 aagcttggca aaaaaccatc aaagaacttc gcggtgcttt tgctactttg ttagtaacaa
    28981 aaaaagatcc caatcatgtg tattttgcaa aaaatgctgc tcctttgatt ataggtaaaa
    29041 atgcaaataa agaatggtat ttttcttcag gtgatgcgcc tttgatagga agttgtgatg
    29101 aggtaatgta tcttgaagat ttaagcttgg gatacgcgag taaagatgag cttgtcgttt
    29161 atgaaaatga tattttaaaa tcactttgtt tttctaagct ttcaggcgat aaggcttatg
    29221 caaaaaaaga cggctttcgt ttttttatgg aaaaagaaat ttatgaacaa agtcgcgtga
    29281 tgagtgaagt tttaatgggg cgtattcaag gcgatgaagt cgtttttgat gagctaaaca
    29341 atgaagattt aagtcaagta gatgaaatca cgctttgtgc ttgtggaaca agctatcatg
    29401 ctgcaatggc aagtgcttat ttgtttgaaa gaattgctaa agttaaagct aaagtagaaa
    29461 ttgcaagtga atttcgatac cgtgaagcaa ttataaaaaa agattcttta tttatcgtta
    29521 tttctcaaag tggagaaaca gcagacactt tagaggcttt aaagattgca aaagagcagg
    29581 gtgctaagac ttttgcaatt tgcaatgtgg ataattctaa tatagtgcgt ttagcacatc
    29641 taagtctttt aactcgtgcg ggcatagaaa aaggagttgc ttcaactaaa gcttttgcta
    29701 ctcaggtttt aacactttgg atgcttgcta tttttatggc acaaaaaaga aatttaaatg
    29761 tttctgctga aattaaagca cttttgcata ctccaaattg cgtgagtgta aaacaggctt
    29821 tacatgaaaa aattcatcgt ttatccaagc gttatttaga tggacatggc tttttcttta
    29881 taggcagaga tgtgttttat cctttggctt tagaaggagc tttgaaactt aaagaattat
    29941 cttatcttca cgctgagggt tatcctgcag gagagatgaa acatggccct attgctttgg
    30001 ctgattctaa gctttatact atagctttaa tgccaaagca catgctttat gaaaaaacaa
    30061 aatcaaatgt tgaagagctt attgctaggg attctacagt gcttagcatt tcacctttag
    30121 aatttgattt aagtgatgat gttataaaaa ccaatgagca agatcattat atgtgtgaat
    30181 tttttgaaat gatggtcatt actcaacttt tggcgatgga aatttccata agacttggca
    30241 atgatgtgga tatgccaaga aatttggcta aaagcgtaac ggtagaatag aaatgaaaaa
    30301 atttttttgt ttaactttag tttgtaaact ttttgcttta agcgaatttg aacttcatca
    30361 tattgataaa gtacataagc tagggtatag tggagatact attataatag gtgtagccga
    30421 tgatgctttt aatcaagatc atattagttt aaaggataag attttaaagt ctacttatcc
    30481 tactgataca gctgggaaac agcttatacc tgatttgaaa aaatcaacac acggaagtca
    30541 tgtagcaggt atagctgttg gagcaaagat aggcgatagc aaaccttatg gagtggctta
    30601 tggggcaaaa ttttatggag ctggggtgtt tccaaatggc tcttacactc aaattcctga
    30661 tatttataat tttttcaaag atgtgagtat tattaataat agctggggta ttaattttta
    30721 tccttatttt aatcttaagg cttcaaattc tggattagta gattgtactc aaactaatca
    30781 agggacaagc tataatatct gtaatactcc tttggaatat gttatgaagg cagataaggt
    30841 tgctaatgat atgatgaggc ttagcaagga caagggggta ttaaatgtat ttgctgctgg
    30901 taatgaagga attcttagcc ctgctttgca tgcgatttta ccaagttatg atgaatcttt
    30961 aagagcttgg ttggctgttg gagctttgga tgcaaatgag attactttag aatcagatgg
    31021 gactttaata attaaaagtc aaggtttggc tgattttagt aatggtttta agggagctac
    31081 gaatttttct ttagttgctg ctggagtaaa tattaataat gttgattcaa gcactaatga
    31141 taagtttaca aaaaaaagtg gaacttctat ggcagcacct atggtaagtg gaacagcggc
    31201 actggtcaag caaaatttcc cctttttgga tggtaagcaa attgctgata tactgttaag
    31261 tacagcaaat aaaaattata aggctccaaa atttactgtt aaacaagtaa ccgatggaac
    31321 aaatcaacct aaatttctta ttgtgtatat ttcgcaagat ccacctagga tagaagatga
    31381 aataaaacgg gatttaaaac agctttacaa tggaatacaa gttcaagtta atggacaatg
    31441 gattgattat agtgattata tttgggataa tagagatagt gcacagtcac aaaaacttaa
    31501 tacttctact attagttcta ttaatggagt agttagagtt gagaaagaag aattatttgg
    31561 acaaggaatt ttagatgcac aaaaggcgtt aaaaggactg agtattttag atgcaaacag
    31621 actcagtgat caggatgtat taaaatatga gcaagaacct aatacagctt attatactat
    31681 aaacactgca ggttatgatg ctgaattttc taatgatatt agtcaaagaa aatgggatga
    31741 aagtactcat ttatcaagtg ctattaataa acctacacat ttagctaatc ttaacatagg
    31801 attatctaaa gaaggtgaag gtattttgat tatcagtggt caaaatactt atgagggtgc
    31861 aactttaatc aaacaaggag aattaaagct taaaggaaaa gttaaaaata atgcttatgt
    31921 agaacaaaaa gcaatattaa gcggtaatgg tattgtaggg caaaatttaa acaataaagg
    31981 catagttaga cctggaaatg aagatttgaa tgatttaacc gtgcaaggaa cttatactca
    32041 agaaggagtt gattctaaat tgcaacttga ttttggtaat tataaaaatt ctaaactgat
    32101 tgcaaaaact tatgatatta agagcgggaa tttagaatat attcctttac ctaaatacta
    32161 tatcttaaat aagccagtga aaattaattt aggagatttg gaaaaaagtt tatcatcttt
    32221 taatcatgtt ttgatacaaa atacctatgc tttaaatttt gattttgttt taagtgatga
    32281 tttagtgagt attaataaaa ccttaataaa acctaattta aagccaaatg cttacgaaat
    32341 tcctaataca agcttgggaa atgctttaag acaattgcga tctagggcag acttgagtca
    32401 gacttatcag gaattttttg cttctttaga taatggaata gatgtaaaga ctaaattaaa
    32461 tagaatagaa ggttcagggt atttaagcac ttttagtaat cataatcaat ctaatttaat
    32521 gcaaaataat atgttattta cccttcatcc tcttaatatt aataattttg cacaaaacaa
    32581 taatatctta cttgctagta cttatttacc tagaattttt agcaatgaag aatatttttg
    32641 gcatcttact ccaagttata aatactataa agataaagat ttttcaggtc aaaaaacagg
    32701 tgctaatatc tctttaggag aaaatttctc atcaggcttt ttagcttatg ctttatctct
    32761 ttctagcgct aaatttaatt ttaataatgg tagtgatttg aagagttata acatggattt
    32821 attgcttaat tataaccatg atttagattt tataaaaata ttaagtggat taggtatagg
    32881 tgtaggattt aatactctta atcgttttgt agtagagcag ccaattgaag gcaaatataa
    32941 aacattgcaa acttcagccc agcttggtgt aactaaagat attattttag gtcaagattt
    33001 tatttttaat cctttaatgt attttacaca tagttttttt tatcaagaag attttaaaga
    33061 aaataaaagt ccttttgcta aaaattatga aagtttaaaa catcatagca taaatgcaaa
    33121 tttaggtttt aatcttgcta aaaatataga gcaagatgat tatcaagctt ctttttctac
    33181 ttttgtaatt tttgaaaaaa gaatttatgg aagaacttta gaaaataagg ctagttttgt
    33241 tgattttcct attgctttta ttcaaaaata taaattaaaa gataatattt taagtcaagg
    33301 ttttaattca gaatttttat ataaaaacaa tgtattttgg cagtttatgt taatgaatag
    33361 attttctcat aatgcctatg aattgcattt aatgagttca gtaggaaaac gtttttgaaa
    33421 gtatttattt ttttagctta taataaataa aattttaatc aaaggaaaaa attatggaat
    33481 acagagttga acatgatacc atgggtgaag ttaaggtccc aaatgacaaa tattggggag
    33541 ctcaaactga aagaagtttt gaaaatttca aaatcggttg cgagaaaatg ccaaaggttt
    33601 taatctatgc ttttgcaaat cttaaaaaat ctttagcttt ggtcaataac aaacttggca
    33661 aacttgatga tgctaagaaa aatgctatag ttcaagcttg cgatgagatt atcgcaggta
    33721 aatttgatga taattttcca cttgcgattt ggcaaacagg ttcaggcaca caaagcaata
    33781 tgaatatgaa tgaagttatt gcaaatcgtg ccactgaaat catgggcggg gattttcgca
    33841 aagaaaagct tgtacatcca aatgatcatg ttaatatgag tcaaagttca aatgatactt
    33901 ttccaacagc tatgagtatt gttgcggttg agcaagtaga gaaaaagctt atccctgcgc
    33961 ttgatgagct tattgcaact tttgaaaaaa aagtaaaaga atttgatagt attatcaaga
    34021 taggacgcac gcatttacaa gatgctactc cacttactct agcacaagaa tttagtggat
    34081 atctttctat gcttttgcat tcaaaagagc aaatcatcgc ttctttacca actttaagag
    34141 aacttgccat aggaggaacc gcagtaggaa cagggcttaa tgcgcatcca gaattaagcc
    34201 aaaaagtaag tgaagagcta actcaactta taggtacgaa atttgtttca agtccaaata
    34261 aatttcatgc tttaacaagt catgatgcga tcaattttac tcatggagct atgaagggtt
    34321 tggctgcaaa tttaatgaaa attgcaaatg atataagatg gttagcttca ggcccaagat
    34381 gcggtcttgg tgagcttatc atccctgaaa atgagccagg aagttcgatt atgccaggta
    34441 aggtaaatcc tacccagtgt gaagctgtta ctatggttgc tgtacaagtg atgggaaatg
    34501 atgcagctat cggatttgca gcaagtcaag gaaattttga acttaatgtg tttaagcctg
    34561 tgattattta taatttcttg caaagtcttg atttgttagc tgattctatg cattcattca
    34621 atatccattg tgctgtaggc atagaaccaa atcgtgcaaa aatcgatcat aatcttcata
    34681 attctttaat gctagttacc gctctaaacc catacatagg ttatgaaaac gctgctaaag
    34741 tagccaaaaa tgcccataaa aaaggtattt ctttaaaaga aagcgcaatg gagcttggtt
    34801 tggttagcga agaagatttc aataaatttg ttgatcctac taaaatgata ggcccaaaag
    34861 cctagaacat aaaacttgcc ttttttaagg caagttaaat taaattctta tcttttaaaa
    34921 tcacatacat tcttaaagtt gatacaaaaa aagttaaaat cgcaggacct agtataatac
    34981 cccaaaaacc aaaggttgaa attcctgcta tcatggccaa gaaaattaaa agttcgttga
    35041 ttttggttgg ggtttttaca agttttttgt tgatccattt gatgattaaa ggtttgatta
    35101 aagtatctgc tataaaagaa attacaatta tagaataaat aaaaataaca agagctgagt
    35161 taagattgtt tgaggcaaat tcataaagac ttacaggcac ataaattaaa gctcctccta
    35221 tagcaggtat gagagaactt acagcaaaaa ttactcccat taaaattcca tcataaccat
    35281 aaaatattgt gattaaacca aaaagtgcac cttgaaatat tgctacaatt accatagagt
    35341 aaagcacaac agccataaca ttacccactt cgcttaaaac atcatcgagt tcttttttat
    35401 caataggaat gatggattta agatagataa caagttctgt tccatataga tttgcaaaga
    35461 aataaaacac acaaattaaa accatatcta taagaaattt agcccctgat tttgtaaaac
    35521 ttgaagcata acttagaatt tgtttagaaa tactatttaa atctatagaa gctaaaaatt
    35581 ctttaatttt aggttctaaa aaattaaagc tttcaggcaa ggtgaattga tagtttttga
    35641 cataatcaag tgtttgtgta actaaattaa tatcaaaatt ctttaaagct ttggcaagtt
    35701 ctatcatagc ataaacaaaa ggtgcaaaga aaagcaaaac catacaagct gttgtaagaa
    35761 tggaagctaa aaatttatgt cctttagtaa gatttaaaaa ttttgcattg atgtttgagg
    35821 tagctaccgc cattaaacta gctatgataa ttacaagtaa aaaaccttta aaaaggtaaa
    35881 gtaaaagaaa taaaataact aaaataaagc ttataagaaa gaattttcca ttttgcaaaa
    35941 tttactcctc aaataaagtt ttttcatagt ttagttttaa agcactataa ctttttgcac
    36001 ttgctatacg cccttttgca gtgcgttcta tatagccatt agctagtaaa taaggctcga
    36061 ttacatcttc tatggtattt tcatcttcac ttaaagccgc agcaatgctt gcaagtccga
    36121 taggtttttg tttagcagca gttaaaagtt caagatatct taaatccatc gcatcaaaac
    36181 caagctcatt cactcctaaa gaatttaagg cctcattagc ccttttttct gtgataatct
    36241 cttcatcatt aacatcagca aaatctctta ccctttttaa aagccttaga gctattctag
    36301 gggttgaacg acttctttta gcgatctcaa gtgcggcttt ttcttcgcaa gttttattaa
    36361 gttttaaagc tgctttttgc aagatgagag caagttcgct atctttgtaa aattctaatc
    36421 taaattgcat accaaaacga tctcgcaaag gattactaag catacctgca cgcgttgtag
    36481 ctcctataag agtaaatttt ggtaaatcga tttttatggt ttgagcagct ggaccactac
    36541 ctatgataat atcaaggcgg taatcctcca ttgcagggta aagcacttct tcgatagcag
    36601 ggcttaagcg atgaatttca tcaataaaaa gtatatcccc ttcgctaaga ttggttaaaa
    36661 tagcggctaa atccccgctt ttttctatca taggagcggc ggttgttttg atatttgcac
    36721 ccatttcata ggagatgata ttagctagtg ttgtttttcc aagtcctgca ggaccactaa
    36781 aaagtatatg atctaaacat tcattgcgtt ttttggctgc agctataaag atatttaaat
    36841 tttttttaat gctttcttga cctatataac catcaaaatt tgaaggacgc aatgaagttt
    36901 cataagtttc atcaaaggag tatttttcta tttctactat tctatccata tctttgctta
    36961 tattttggaa aaattaaaat aagattttag ctaaaatttg ctagaattta cattaaactt
    37021 taatgattat ggtttaaaaa tgggaatttt aacaaaatta gaattagatt atgaaattga
    37081 cgatatagaa aaatttttac aattttttag aaccatgtgc gataggtttg aacctttaat
    37141 catcaagctt ggaagcgata gcgtgcgtta taaagaagcc ataaaagagc ttgaaacttt
    37201 agcacacaat accgcttggg cagcaagacg cttaaatctt gaagaagtga ctgatttttg
    37261 tgtattttgt gaagagatga tggcgcaagc aaatcgcttt aacgggcctg ctagtgatga
    37321 atttacggat tggatgcttt tgatgagtga tcagtttgaa aaatattgtc gttcatatga
    37381 aaatgatgat tctgttttag cggtttttaa tcctttaatt gttaatgttc caaatattat
    37441 ttctaaataa gggagcgact tggcttcgac aggagtaagt ctgcttagat ggcatgtcgc
    37501 tttgggcaaa gcgtaaaaag cccaaataaa attaaacgca aacaacgtta aattcgctcc
    37561 tgcttacgct aaagctgcgt aagttcagtt gagcctgaaa tttaagtcat actatctagc
    37621 ttaattttcg gtcatttttg atagtgtagc cttgcgtttg acaagcgttg aggtgaaata
    37681 aggtcttagc cttgcttttg agttttggaa gatgagcgaa gtagggtgaa gtagtcatct
    37741 ttgctaagca tgtagaggtc tttgtgggat tatttttgga caggggttcg attcccctcg
    37801 cttccaccat cacgctaatt ttaagtaaat cataagttta tttcaaattt ttagaatttt
    37861 ttatatgaag ttaagaacga tttattaccc ttaaaacttt gatatattag gttttataat
    37921 ttttcattaa aaatttatag ttttattttt aagcttgttt ttaggggggg gggtataatt
    37981 attccttcag tttaaattta ttgaaggaga aacttatgaa aaaaaaatgc ttcaagcaag
    38041 atattgctaa gcttaggtgt agcaactttg ctttattcga gtgcttttgc gcaagaaatc
    38101 aatcttacag ggtcttcaga tataggaaaa tattttgaag aaaatggtaa ggatatcaat
    38161 cttaaaaatc ctgatgatta caaagggcaa gatttaagta tcacaatagg tgtttgggat
    38221 ttaccaaacg atgattatga tagcgctgat tgtcgattta acattgatat cggtaaagac
    38281 aatactttaa gctttacaca taacaataaa aaaatcctgc ttatgtaaca aatctaaacg
    38341 ctactgctaa agaggttaaa acaacagata tagttttaca agcttttgca ccttcggtga
    38401 ttaatggaaa tttaactatg actagctcag gaggtgaagc cattactgag gatgaaaaaa
    38461 aggttcaggt ataattcttt ataatggagt agttgaagaa aaaagtgcta atggtagctt
    38521 aactataaat ggaaatttta ctgccgataa aacccttttt tgctacttat ggaaattttg
    38581 ttaaggtaaa tggaactgca aatcttaaaa attcaaattt tggacttatg aagcgctctt
    38641 atacagactt agaagcaaat aatgtagtaa tagttcaagc taaagatttc aatgaaaaca
    38701 ttttaaaagc aaataataac gcaggtgcat tacttttaaa attcgcaagt gattatatct
    38761 caaccgatgt tcaaggcaaa gatcctttgg aagcaggaac tataatagat attagtgatg
    38821 aagataaata cggcgatgga gaaaaaggct tagtagatta taaacttagc gttcaaaact
    38881 gcggtggcaa taaatgctta gtgatcaatg gaggtgctac tgcagcggct aaagataagc
    38941 tagttcaact tcaagtagat atagatacta tcgataaatt gcttaaaaat gaatttgatt
    39001 ccgatcaaga tgaagaatgg gcaaaagcca aagaagccct tgaaaaacaa aaaactgaac
    39061 ttcaaacaat gttagaagaa gctgagaaaa acggcggtaa aatcgatgat gaaaaataca
    39121 ttgatttagt aaataaaaat tcaaattgaa atcttaactc taatgataaa gcttctattc
    39181 tagcacttcg ttctatcaca gaacaattag gaagtatagg agcagattta gcaagtagag
    39241 aaggtgtaaa actagcttta gatatcaaaa aagatacaga caatacaggt aaatctgtat
    39301 ctaatctaaa ttcagcttct agtgcagtaa ataccactat gaatatttct aatgatgttt
    39361 ctataggttc tcgtgtagca atgctaaaca atccttttgg aacttatgct tctaaaatga
    39421 atggtcttaa atttgctgct ttagatagcg atatgagacc aagctatgta aatgaatata
    39481 ccaatagtgt ttgggctaat gcttttggtg gtgctaacat tatcgatgga gatagtggtg
    39541 caatgtatgg tgctaccgtg ggagtagata aacaagctaa tgataatgtt ttatggggtg
    39601 cttattttac ttatgcaaat gctaaaatca aagacaataa tttagaacaa aaaagcgata
    39661 acttccaatt aggtatgtat tctactatca atatagctcc acaatgggaa cttaatctta
    39721 aagcttatgc tcaagtttct ccaactaaac aagacaatgt tcaaatagat ggtgcatata
    39781 actcagatta tacaagcaaa ttcttaggac ttagtgctaa tgcaggtcgt gtgtttgact
    39841 ttagtgataa tactttattt attaaacctt ttgcgggagt aaattattat tttagttata
    39901 ctccatctca tacagaaaat ggtgctattg ctaaagatat tgattctatg aaaaacaatt
    39961 ctgtaagtgt tgaagtgggt gctgaattta gaaaatatat gaatgaaaac tcttatattt
    40021 ttgtaactcc aaaaatagaa caatttgtta tcaatagtgg tgatgattac acagctaacc
    40081 tagctgtaaa taatgctttc tttactagta ttgaagctaa caacaagaaa aaaacatacg
    40141 gacaaattat cgtagggggt aatgtagatt ttacaaatca actcagtatg aatcttggct
    40201 ttggtgctaa acaaatacta gcaggtaaag tagataataa aaatgaaact tacttaagtg
    40261 gtcaagtagg acttaagtat aaattttaat cttaaaaatc atttctaaat ctttttatag
    40321 tttagaaatg attgtttatt tctatgggaa atctcctagg gctttatctt aaagcccttt
    40381 tttataacaa acaagtaaat aagtctttag agtaaaaaac cctaaaaact tttagttttc
    40441 tttgaaaagt ttggaagcta agtgcgttgc acgactttga tctgtatctt ttttaagtgt
    40501 tttataaatt ttacttacat attcttctaa ggtttgttga gaatctatga ttttttcaga
    40561 agaaggaatt ttttcatatt ctccattatt tttaagctta taagctaaaa cattatcact
    40621 aagttgcaag cgtaaaaatt gagctaattt agctttgctt ctttcatcat atataggagt
    40681 cataagttct aaacggcgtt ctaaatttct tggcatccaa tctgcactcg atataaaata
    40741 atttggctca ctatgtttaa aataaaatac tctagcatgt tctaagtatt ttcctatgat
    40801 gcttctaacg cgtatgtttt tgctgtattc ttcatcaggt tttaagcaac aaattccgcg
    40861 tatgataaga tcgatttgca ctccttccat acttgcttca taaagcgctt gtatgatatc
    40921 actatccaca agagaattca ttttagctac aatcacacct tcatttttct tgcttgtttc
    40981 aatgcgtatc atttctaaaa ctttttcttt gatttgattt gggctcattg aaagagtttg
    41041 aaggcgacga tttttactaa agcccgataa gatgtggaaa aagcttgtcg tatctcttgc
    41101 aaattctgct ttgcttgtaa aataactcac atcagtatag attttagcac tgcttgcatt
    41161 ataatttccc gtacttaaat gcatataaaa tttaagttta tctccttgtt tgcgtatgac
    41221 ttgagaaacc ttagcgtgga ctttaaaacc tgtaatgcca taaataacat gagctccggc
    41281 attttctaaa gctttcgccc aatgaagatt attttcttca tcaaagcgtg cttttaattc
    41341 taccatcaca gttacttgtt ttccatcact tgcagcatca attaaagctt gaactatatt
    41401 ggaatttttt tcaactctat aaagtgtcat tcttatggaa attacttcag gatctttgct
    41461 tgcttctttg ataaatttat aaactggatc aaaactttca aaaggttgta tgatgagtat
    41521 atcttctttt tctacagcgt caaaaataga taaattttca tcaaaaggtg gtaaagtttt
    41581 aggcgtgtaa agtgggctta aaagatgcgt aaaggtttta tttcctgcga tttgccaaag
    41641 gctagggaga ttgagtaaaa tagaatattc ataaacatct ttatgaaaaa ttttcatgtg
    41701 agtattaaga aattctacga tttgctcatc tgcatctttt tgaatttgca atcttacaaa
    41761 agctcctttt ctgcgaagtt ttaagccttg ttctaaaatc atcataaaat catcagcttc
    41821 ttcctcttct attaccatat ctgcatttct agtcactcta aatgctgctg aagctaagag
    41881 tttatagcct ggaaaaattt cttctgcgtg ttgatggact atactttcta taggaacata
    41941 aatatttgca cttacttcat aaaaacgagg taaaactctt ggaattctaa tcattccaaa
    42001 ttttacaagt tcaggatgtg ctttatcgca aattttaacc gctagtgaaa aagataagtt
    42061 gtttaaatgc ggaaaagggt gagtagcatc aacagctatt ggaacaataa caggaaaaat
    42121 attggagaaa aaatactcat cacatttttg ttttaaattt tcatctaaat tctcataatg
    42181 ttttatgaaa agattttctt tttctaattc acttgtgatt tcattaaaat aacgctccaa
    42241 aagctctttt tcttggtgta agtatttgcg tatggctttt aattgttgca acggtgtcat
    42301 ttcatcgcta ctgcttgcat taactccagc tgaaaaaagt tgttttaagc ctgcgacgcg
    42361 tatcatataa aattcatcta aattagtgca atatatagct ataaatttta atttttctaa
    42421 caagggtaaa tttttagaac attggtctaa aacacgagaa ttaaagcgaa gccaagaaag
    42481 ttcgcgattg ataaacatat caggacttgt ttgcattaat ttttcctttt ttagttgtat
    42541 tttatcattt attttgaaat tattgaataa aagttttaa
//
LOCUS       DARGBD010000004        39949 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.004, whole genome shotgun sequence.
ACCESSION   DARGBD010000004 DARGBD010000000
VERSION     DARGBD010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 39949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39949
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.004"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            121..1527
                     /gene="aspA"
                     /locus_tag="SFZ04_000144"
     CDS             121..1527
                     /gene="aspA"
                     /locus_tag="SFZ04_000144"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEG8064460.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1544..2881
                     /locus_tag="SFZ04_000145"
     CDS             1544..2881
                     /locus_tag="SFZ04_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG8064461.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLAAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     VLHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVVLGFVLAPMLI"
     gene            2987..4348
                     /locus_tag="SFZ04_000146"
     CDS             2987..4348
                     /locus_tag="SFZ04_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HEG8064462.1"
                     /translation="MKIKVGLIFSGIVCLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAT
                     KFVGTTLLNDTIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEEQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4358..4753
                     /locus_tag="SFZ04_000147"
     CDS             4358..4753
                     /locus_tag="SFZ04_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HEG8064463.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRAKDFRLEIKAKINLICRKDKS"
     gene            4750..5373
                     /gene="lpoB"
                     /locus_tag="SFZ04_000148"
     CDS             4750..5373
                     /gene="lpoB"
                     /locus_tag="SFZ04_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HEG8064464.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTITKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5456..6793
                     /locus_tag="SFZ04_000149"
     CDS             5456..6793
                     /locus_tag="SFZ04_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064465.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINIQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAIISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6803..8005
                     /locus_tag="SFZ04_000150"
     CDS             6803..8005
                     /locus_tag="SFZ04_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064466.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEATLK
                     QIANRISGDILNAIYPLKVAAVENNEVIFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKFSYAKITEGSVKVGDICRPLSNTGSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8164..8472
                     /gene="rplU"
                     /locus_tag="SFZ04_000151"
     CDS             8164..8472
                     /gene="rplU"
                     /locus_tag="SFZ04_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEG8064467.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8483..8737
                     /gene="rpmA"
                     /locus_tag="SFZ04_000152"
     CDS             8483..8737
                     /gene="rpmA"
                     /locus_tag="SFZ04_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEG8064468.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8844..9881
                     /gene="obgE"
                     /locus_tag="SFZ04_000153"
     CDS             8844..9881
                     /gene="obgE"
                     /locus_tag="SFZ04_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEG8064469.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDVQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASVGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVRLGEEFAEQIALNINELDNYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNK"
     gene            10004..10759
                     /gene="proB"
                     /locus_tag="SFZ04_000154"
     CDS             10004..10759
                     /gene="proB"
                     /locus_tag="SFZ04_000154"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEG8064470.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10833..11750
                     /locus_tag="SFZ04_000155"
     CDS             10833..11750
                     /locus_tag="SFZ04_000155"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEG8064471.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11713..12366
                     /locus_tag="SFZ04_000156"
     CDS             11713..12366
                     /locus_tag="SFZ04_000156"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEG8064472.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCEQIRNGKIDENFAIYALEQTN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12363..13148
                     /locus_tag="SFZ04_000157"
     CDS             12363..13148
                     /locus_tag="SFZ04_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEG8064473.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13154..13990
                     /locus_tag="SFZ04_000158"
     CDS             13154..13990
                     /locus_tag="SFZ04_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEG8064474.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KF"
     gene            14051..14476
                     /locus_tag="SFZ04_000159"
     CDS             14051..14476
                     /locus_tag="SFZ04_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HEG8064475.1"
                     /translation="MFEDMHPSIMLATIAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLCVNDELEVIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAIQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            14487..14999
                     /locus_tag="SFZ04_000160"
     CDS             14487..14999
                     /locus_tag="SFZ04_000160"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEG8064476.1"
                     /translation="MSKLLFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVGILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            15002..15523
                     /locus_tag="SFZ04_000161"
     CDS             15002..15523
                     /locus_tag="SFZ04_000161"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEG8064477.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFLDSFFDIKNSSFQNFLRLLIENSRLECIPQIVKELERQKAFKENIFV
                     GIVYSKEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKA
                     LQNKLNEYILKII"
     gene            15537..17042
                     /gene="atpA"
                     /locus_tag="SFZ04_000162"
     CDS             15537..17042
                     /gene="atpA"
                     /locus_tag="SFZ04_000162"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEG8064478.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            17051..17935
                     /locus_tag="SFZ04_000163"
     CDS             17051..17935
                     /locus_tag="SFZ04_000163"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEG8064479.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEYSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            17961..19358
                     /gene="atpD"
                     /locus_tag="SFZ04_000164"
     CDS             17961..19358
                     /gene="atpD"
                     /locus_tag="SFZ04_000164"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEG8064480.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            19362..19751
                     /locus_tag="SFZ04_000165"
     CDS             19362..19751
                     /locus_tag="SFZ04_000165"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEG8064481.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            19751..20305
                     /locus_tag="SFZ04_000166"
     CDS             19751..20305
                     /locus_tag="SFZ04_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8064482.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            20314..20703
                     /locus_tag="SFZ04_000167"
     CDS             20314..20703
                     /locus_tag="SFZ04_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HEG8064483.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSTPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            20706..21485
                     /locus_tag="SFZ04_000168"
     CDS             20706..21485
                     /locus_tag="SFZ04_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HEG8064484.1"
                     /translation="MKNYSLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAAKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEVKVKND"
     gene            21495..22703
                     /gene="tolB"
                     /locus_tag="SFZ04_000169"
     CDS             21495..22703
                     /gene="tolB"
                     /locus_tag="SFZ04_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HEG8064485.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            22780..23277
                     /gene="pal"
                     /locus_tag="SFZ04_000170"
     CDS             22780..23277
                     /gene="pal"
                     /locus_tag="SFZ04_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HEG8064486.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            23281..24228
                     /locus_tag="SFZ04_000171"
     CDS             23281..24228
                     /locus_tag="SFZ04_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG8064487.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSFLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            24243..24812
                     /locus_tag="SFZ04_000172"
     CDS             24243..24812
                     /locus_tag="SFZ04_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8064488.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            24812..25732
                     /gene="fabD"
                     /locus_tag="SFZ04_000173"
     CDS             24812..25732
                     /gene="fabD"
                     /locus_tag="SFZ04_000173"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEG8064489.1"
                     /translation="MKTAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNS
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            25729..26418
                     /gene="pfs"
                     /locus_tag="SFZ04_000174"
     CDS             25729..26418
                     /gene="pfs"
                     /locus_tag="SFZ04_000174"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HEG8064490.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            26415..27170
                     /locus_tag="SFZ04_000175"
     CDS             26415..27170
                     /locus_tag="SFZ04_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HEG8064491.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLQKA"
     gene            27175..27696
                     /locus_tag="SFZ04_000176"
     CDS             27175..27696
                     /locus_tag="SFZ04_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HEG8064492.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            27696..28310
                     /gene="recO"
                     /locus_tag="SFZ04_000177"
     CDS             27696..28310
                     /gene="recO"
                     /locus_tag="SFZ04_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HEG8064493.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            28307..28714
                     /gene="ybeY"
                     /locus_tag="SFZ04_000178"
     CDS             28307..28714
                     /gene="ybeY"
                     /locus_tag="SFZ04_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEG8064494.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            28838..29527
                     /locus_tag="SFZ04_000179"
     CDS             28838..29527
                     /locus_tag="SFZ04_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064495.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELTKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELLESEVKNLFQWMDENAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKKLQETSEEDKKAF
                     KPIQVESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMNFSNDNAGEFNKILSQ
                     NTSAKIIDIKA"
     gene            complement(29552..30478)
                     /locus_tag="SFZ04_000180"
     CDS             complement(29552..30478)
                     /locus_tag="SFZ04_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEG8064496.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFISIHGRTRKQLYSGKADYGSIASAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDTVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(30475..31461)
                     /locus_tag="SFZ04_000181"
     CDS             complement(30475..31461)
                     /locus_tag="SFZ04_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064497.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(31451..31813)
                     /gene="dksA"
                     /locus_tag="SFZ04_000182"
     CDS             complement(31451..31813)
                     /gene="dksA"
                     /locus_tag="SFZ04_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HEG8064498.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(31825..32274)
                     /locus_tag="SFZ04_000183"
     CDS             complement(31825..32274)
                     /locus_tag="SFZ04_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEG8064499.1"
                     /translation="MQVNIFCIQKSDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(32276..33118)
                     /locus_tag="SFZ04_000184"
     CDS             complement(32276..33118)
                     /locus_tag="SFZ04_000184"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEG8064500.1"
                     /translation="MNFADIFSKIRRQQPSVKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTSLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(33127..33849)
                     /locus_tag="SFZ04_000185"
     CDS             complement(33127..33849)
                     /locus_tag="SFZ04_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEG8064501.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFNNKQAFKSNLSDPKYSPLTPNLFSKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(33849..36068)
                     /gene="bamA"
                     /locus_tag="SFZ04_000186"
     CDS             complement(33849..36068)
                     /gene="bamA"
                     /locus_tag="SFZ04_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEG8064502.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINIAGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVSITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDNTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            36145..36972
                     /locus_tag="SFZ04_000187"
     CDS             36145..36972
                     /locus_tag="SFZ04_000187"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEG8064503.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIAILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            37052..38425
                     /locus_tag="SFZ04_000188"
     CDS             37052..38425
                     /locus_tag="SFZ04_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8064504.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            38425..39309
                     /locus_tag="SFZ04_000189"
     CDS             38425..39309
                     /locus_tag="SFZ04_000189"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEG8064505.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNIRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            39348..39749
                     /locus_tag="SFZ04_000190"
     CDS             39348..39749
                     /locus_tag="SFZ04_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HEG8064506.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDVI"
     gene            39758..>39949
                     /locus_tag="SFZ04_000191"
     CDS             39758..>39949
                     /locus_tag="SFZ04_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEG8064507.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEI"
BASE COUNT        14312 a         5262 c         7087 g        13288 t
ORIGIN      
        1 tgtatttgaa agtagttttc ttattaacca attattaact aaaaatgcaa tatcattatt
       61 ttatgattta aatcaaaaat ttttgatttt aaattaaaat acttttatga aaggttcaaa
      121 atgggaacaa gaaaagaaca tgattttatt ggggaattag aaatctctga tgaggtttat
      181 tatggagtgc aaacttttag agctgttgaa aattttgata tttctcatga tagattaaaa
      241 gattttcctc gctttgttag agctttggct agagtaaaaa aagctgcagc tatggcaaat
      301 catgaattag gtcttttgga taaaaatatc caagatgcga ttattaaagc gtgcgataaa
      361 attttagaag gtgggtatta tgatcaattt gtagtagata tgatccaagg aggtgctgga
      421 acaagtacaa atatgaatgc taatgaagtt atagcgaaca taggacttga acttatgggt
      481 cataaaaaag gtgaatacca atatcttcat ccaaatgatc atgttaattt aagccaaagt
      541 actaatgatg cttatcctac ggctttacac cttgccttac atgattattt aagtgatttg
      601 gcaaaagcta tggaacatct aaaaaaagct tatgagagaa aagctgaaga atttaaagat
      661 gttcttaaaa tgggtagaac ccaactgcaa gatgctgtac ctatgacttt aggtcgtgaa
      721 tttaaaactt ttgccgtaat gataggtgaa gatatacaaa gagtattaga agctagaaaa
      781 ttgattttag agatcaattt gggtggaact gctattggaa caggaattaa ttctcatcct
      841 gattatccga aggttgtaga aagaaaaata agagaagtga caggttttga atatactgtg
      901 gctgaggatt taatcgaggc gactcaagat acgggagctt atgtacaaat ttcaggtgtt
      961 ttaaaacgtg ttgcaacaaa actttctaaa gtatgtaatg acttaagact tttaagtagt
     1021 ggtccaaaat gtggtcttaa tgagattaat cttccaaaaa tgcaaccagg tagttctatc
     1081 atgccaggta aggtaaatcc tgttattcct gaagtagtta atcaagtttg ttattttgtt
     1141 attggagcag atgtaactgt aacttttgct tgtgagggtg gacaattaca acttaatgtt
     1201 tttgaaccag ttgtagcata tagcttattt aattctgttg taatgctaga aaaagcaatg
     1261 tatactttag ctgataaatg tatagatggt attaccgcaa atgaaaaaat ttgttcagac
     1321 tttgtctata attcagtagg tatagtaaca gctttaaatc cttatattgg ttatgaaaat
     1381 tcagcttcta tagctaaaga ggcaatgaac actggaaaaa gagtggctga tattgcgctt
     1441 gaaagagggc ttttaagtaa agaacaaatt gatgaaattt taactccatc aaatatgcta
     1501 aaccctcaca tggaagctaa aaaatagcat tttaggattt aatatggata taatgataat
     1561 tttgcaagta atcgtccttc ttggggcgat ttttatcggt attcgcctag gcggtattgc
     1621 tataggttat gctggaggat taggtgtagt tatattaggg cttgttttag gtatgaaacc
     1681 tggtaatatt ccttgggatg ttattttaat tattgccgca gctattgcag caatttctgc
     1741 tatgcaacaa gcaggtggac ttgattacat ggtaagggtg acagaaaaaa ttttaagatc
     1801 aagtcctaaa tttataaatt atttagctcc agcttgtggg tggttgctta caattttagc
     1861 aggaacagga aatgcagtat tttctttaat gcctgttgta gttgatgttg caaaatctca
     1921 aaacataaaa cctagtgttc cactttcatt aatggttgtt tcttcgcaaa ttggaatcac
     1981 tgcttctcct gtaagtgcag ctgtggttta tatgagcggc gttttagagc cacttggatg
     2041 gaattatcca actttaattg gaatttggat tagcacaact tttgtagctt gtatgcttgc
     2101 agcttttata gtgagtttaa tcactcctat ggatttgagt aaggatagtg tttatcaaga
     2161 acgattaaaa gcaggacttg taaaggatgc aggagctgtt ttgcatggcg aagataaacc
     2221 aggtgctaaa ctttcagtgg taattttctt gatcactgtt ttggcagttg tactttatgc
     2281 aaccgcaatt tcaagtaata ttaaatggat tgatcctgtt gtggttccaa gagatgcagc
     2341 tattatgagc tttttgctta ctgcagcaac tttgatcact tggctttgta aagttgaacc
     2401 aggtaaaatt cttgacacta gtgtatttaa aagcggtatg actgcttgtg tttgtgtttt
     2461 tggtgtagca tggcttggaa atacttttgt tgcaggacac gaagcttcta tcaaagaagt
     2521 agcaggcgac tgggttaaac aaacccctgc tatgttagca gttgcatttt tctttgcaag
     2581 tatgctttta tattcccaag cagcaaccgc aaaggccatt gtacctgtaa ttatcactgc
     2641 tttaggaatt tcagcagcaa atccgcatga ttcttatatg cttgtagctt gttttgcagc
     2701 agtttcggca ctttttgtgc ttccaactta tccaaccttg cttggtgcag tgcaaatgga
     2761 tgatacagga acgactagaa ttggtaaatt tatatttaat cactcattct ttataccagg
     2821 ggttttagct attgcaattg ctgtagtatt aggctttgta ttagctccta tgcttattta
     2881 aatcaaaccc taggtttttc tcctagggtt aaattttttt cattagtttt taagtatata
     2941 ctacgttata atattcattt tcaattttct ttaagaaagg aatttaatga agataaaagt
     3001 tgggttgatt ttttcaggta ttgtttgcct ttttttaaca gcttgtgtta atcaggttaa
     3061 acaaaataca acatttgaaa atactttaac acaaaaatat tgtggtgatg attttttcaa
     3121 tcaaaattta gaaaaaatta aaaaaaatga tgatgtcatt tatacaggat taaatgcagg
     3181 tttgattgct agaaattgtg gtgattttaa taaaagtaat gtattttttg atgctgtaga
     3241 agaatcttat aaatatgatg tggatttaga aaatgtaagc cctaaagcaa ctaaatttgt
     3301 tggtacaacc ttgcttaatg atactatagt agattatgat ggttctttat atgaaagaat
     3361 tatggttaat atatataaag ctctaaacta tatggaagaa gatgattatg aaaatgcaag
     3421 agttgagttt aatcgtgctt taatgcgtca agataaggca aaagaatatt ttgctaaaga
     3481 aattgaaaaa aatcgtgctg atttagataa ggcaaaagaa gataaaaatt atgataaaaa
     3541 tatgaatgaa aattcaaaag ttatagaaga gcaatatgac aacttattta aagaatttga
     3601 tacaacaaaa aatttcataa atccttatgc gacttatctt gcttcaatat ttttctttat
     3661 ggataaagat tatagaaaag ctgcagattt atttagagaa gtagctatta tttatccaaa
     3721 aaacaaaact atcaaaaaag aggctaaaat ttttaaagaa tatgccacaa aaataaaagt
     3781 caaaaaagct aaaaaatatg tttttgtagt ttatgaaaat ggatttggtg tagttaagga
     3841 tgaatttgct ttaaccttac cttttatagt ggataaaaaa attattagca caaatattgc
     3901 tttacaaacc ttaaaaaaaa gggaagcttc ttttgcaaat ttaaatataa atggtcaaaa
     3961 tacaaatgat tttgtagatt tagacaatat tgtcgctact gaatttaaaa taaatatgcc
     4021 tgcaatgatt gctaaagcct tagctcaaac tataattaaa accactttaa atgtagctgt
     4081 tgcaaataat gactctacag gtggatggct aagtcttgca acagcagtag caactgctgc
     4141 aaccaataaa gctgatgtgc gttcttggag aggtttacca aaaagtattg ccatagcaac
     4201 aatagaaaac gacggaaatt tagaaatcaa agatccacaa ggcaatattt tgtttcaaaa
     4261 atcattggat aaaaataaaa atgctcttgt gatagtgcgt tcttttgctc cgtatttacc
     4321 cgcaagtgtt gctatcatgg aaaaataagg ctaaaagatg aaaaaaaata ttttatttat
     4381 tttaatgttt ttacttagtg cttgtgcacc aagttatcaa ataaattcaa atcaaaatac
     4441 tgtaatttta ggttcaaatt taccaaaaag tttagtaaaa caatttcaaa agcgtataaa
     4501 tagcaatggt tatttagaat ttgaagtgat tttacgcagt acttttgcta aagatgtaat
     4561 ttataaagtg gattggttag ataaagatgg ttttgtgcta agagatgttt taaatgagga
     4621 ctatcaagcc cttagaattc cagcaggaca agaggtaatt cttcgtaaac ttgcatctga
     4681 tacaagagcg aaggatttta gattagaaat taaagcaaaa attaatctca tttgtaggaa
     4741 ggataaatca tgaaaaaaac aaaaatttta ggaacagctc ttattggagc tttgcttttt
     4801 agtggttgtg cgcaaacagc ttatacagat ggaaaggcaa gtcaggtaaa aaaaggcgat
     4861 gctttaacct tgggtcttga tagacaagat tttgaaagtg cagctgaaac tatgataaat
     4921 agtatgttaa gcgatcctgc ttttgcaaat attaaaccag gtacaagaaa ggttattgct
     4981 attggtaggg ttgtgaatga taccccgcaa agaatcgata ctgaaaaact caccgcaaaa
     5041 atcacttctg cattaagaaa atcaggtaaa tttgttctaa cttcagcagt tgctgcaggc
     5101 ggagcacttg atagcatgag tgaagatgta agagaattaa gagataatga tgagtttaat
     5161 caaaaaacca taacaaaaaa agggacattg gtatcgcctg atttttctct tgcgggtaaa
     5221 attagacaag ataatgtaaa acttagcaat ggtaaaactc aagtagaata ctttttcttg
     5281 ctaagactta ctgatctaac atcaggttta gtttattggg aagatgagca aactattgat
     5341 aaaaccggtt ctagtaaatc agttacttgg taaaataaaa attaatttat gaataaattt
     5401 ttttagctca agtgtttagc ttgggctttt tttatgattt ttaaaaggat acgaaatgaa
     5461 aaaaatatta tttatcggct ctttagttat ggcaagttta ctttatgcac aaggttccca
     5521 gcctgtagaa attacacaac aagatataaa tattcaaaat gaaatgtctg acgcaagtac
     5581 taaggatatt accccaaaat caattgaaga tttttttgaa gaatttgccg ataatttcgg
     5641 tatagaatat ggtataacca aagatggaaa aactttttat acaggaaaaa gtactgttgc
     5701 tgtaaatgat actgatccac aatttgcaca agctttacaa aatgcttatc aaaaagcaat
     5761 gttaaattta caaagcgaat ttataagaga tgcttttgga agaattgcta caagcaagat
     5821 tcaaaattat gaagcagaca attctactaa tgctaaggaa tttgatgaat tgccaaaagg
     5881 tgataaggtt gatcaaattt taaataaact tacacaatta gctggtgctc agcttgataa
     5941 ggcattaaaa gatttaggta tagatacaaa ttctttaagc gaagacagaa aaaagacttt
     6001 attaaagcaa gaatttctta ataaaactat gacaaatgcc ataggttcta tgagtggact
     6061 tgttcctgtg caaactatag ttacacaaag aagaggtgag tatgatgtag gtgttattgc
     6121 tattatttcc aataaaactc gccaattagc aaaagatatg gcactagcaa gacagagtgc
     6181 tattaagggt aaaggcaagg caataagtga gtatctgcca aaagatacaa aaggcttttt
     6241 aaatgaatat ggaattcgct tagtttatga tgaaaatggt gcacctatta ttttaagtta
     6301 tggaaactgg ggttatgtag cagatcctag caatgctaaa aaaacaaata ttttagaaga
     6361 tagagccaaa gaaacagcac ttactatggc tgatgctgct attatagagt ttattaatac
     6421 aaatttaagt cttaaagatg aaagaacaac tggtgatact tacgaggaaa tcatcaaaca
     6481 aagtattaat gttaatgata gttccactca agaacaaact caaaacataa caaatattat
     6541 tgacaaagta aatagtaaaa taaaagcaag cgcaagcggt aaaattcgtg gtattcgtac
     6601 tcttaaaaaa tggagctata caagtgaaaa tggtattgaa catgtaggag ctgtgagatt
     6661 ttattcttat gaaaatttag ctaacacaaa tgaggcttta aattcaaagt caaatgcaac
     6721 aaaaaatgaa gctaaaaaat cttctagcat acaaagaagt tctaatgttg taaatagcat
     6781 ggatgatttt taaaggtaaa agatgaaaat aattaaaatt ctttttttag gcttattttt
     6841 aagcctaagt cttaatgcta aagttataac cacaacttca acaaaatcaa gcacaggtga
     6901 aggcacaggc ttgactaggg aagatgcgat aaacaatgcc attatagaag ctataggaaa
     6961 aatgagtgga gtaagcatca attctcttaa gaaatctaac actagcgttt caactgataa
     7021 ttcaggttca aatatacaag ataattacag cgagcaaatt tcaaaagcca ccaaaggtag
     7081 agctgatact tatgaaatca atagtgttga acaagatgca aatggtaaat atacagccaa
     7141 tgtaacgatt tttaaaacca caacaacaaa aaagtatcaa gctccaggtt taagtgcaga
     7201 taatagaaga agtattactg tttttgattc tactccagat gctgcaaaaa gaggtatagg
     7261 ctcagctttg caacaaaaaa tcatttctga tttattgcaa agtcgtaaat ttaatgtttt
     7321 agaccgtgat tctagtggct attatgaaat ggaaaaagct ttaatcaaaa gtggcgacgc
     7381 agctagcgat gaagtttata aacttaaaaa tgtgttagca acagattata ttttattgtt
     7441 ttctatttca ggacttgaag gtaaacaaaa aacaagcaat ttaacaggaa aaagcaaaac
     7501 tgaaattgaa gttatcgtag attatcgtgt gcttttattt gctacaagac aaattaaatt
     7561 ttctaatact ttaagcatga aagtcaatct taaagacaat agtcttagtg ccaatgaagc
     7621 tacactcaaa caaattgcaa accgcatttc aggagatatt ttaaatgcaa tttatccttt
     7681 aaaggttgca gctgttgaaa acaatgaagt aatattttct caaagcttaa atcaaggtga
     7741 tgtttatgaa tgttttgctc ttgggaaggt tataaaagat acttatacaa aagaaaatac
     7801 aggaagagta gaaagcaaaa caggaagtat tgaaatcact cgcacaagcc ctaaattttc
     7861 ttatgcaaaa atcacagaag gtagtgtaaa agtgggcgat atttgcagac ctttaagtaa
     7921 tactggtagt ggaaatggct acactatagg tcgtgatgca aattatcaaa cccaagaagg
     7981 cggcggagta aatctaggct tttaaatttt tagagtttga tttttctcaa actctaaact
     8041 ctttcttaaa ttcatcaaaa attaaagaaa aattttgtaa aatcgaaatt ttattaaacc
     8101 actaaagctt ttaaatccgt tattacggtg ctttatggta ctaccaattt ataaggaaaa
     8161 gcaatgtatg ctattatcaa acacagcgga aagcaataca aagtaagtgt tggcgatgag
     8221 ctaaaactag atcactttga agctgaaagc aaagcaagta ttgaagtaag cgaagttctt
     8281 gctatcaatg ataaagaatt aaaggtaggt gcgcctttcg tagcaggtgc aaaagttgtt
     8341 ttggaagtga tcaatcacgg aaaagataaa aaagttgtga tttacaaaaa aagacgcaga
     8401 aaagattcta aactcaaacg cggttttaga agacaattta ctcgcgttgt agtaaaagat
     8461 attaaagctt aaggagtaaa gaatggcaca caagaaaggt caaggttcaa ctcaaaataa
     8521 ccgcgattcc ataggtcgtc gtttaggtgt taaaaaattt ggtggcgagt ttgttagagc
     8581 tggaaatatt atcatccgcc aaagaggaac tgcaactcat gcaggtaaca atgtaggcat
     8641 gggaaaagat catactatct ttgctctaat tgatggtttt gtaaaattcg aaagaaaaga
     8701 caaagataga aaaaaagttt ctgtatatcc tgcataagtt tttaggacgc tttttagcgt
     8761 cttgaaaact ttaaatttat aaatttaact tcttttattt actcaaattt agctttataa
     8821 atttaaagtc aaaggcaatt taaatgttta ttgatagtgt taaaattact ttagcttcag
     8881 gcgatggtgg caaaggtgct gtaagttttc gccgtgaaaa acatgttcca cttggtggcc
     8941 ctgatggagg agatggtgga aatggtggtg atattatttt cgtatgtgat aataataccc
     9001 acactcttgt aaatttcaaa ggcaaaagag aattacgcgc gcaaaatggt gctggtggaa
     9061 tgggacgcaa taaaaatggc aaaaagggtg aaaatttaga acttatagtg cccgaaggaa
     9121 cgcaagttat cgatgtacaa accaatgaaa ttttacttga tcttaccaaa gaaggacaaa
     9181 gagagctttt tttaaaaggt ggaaaaggtg gacttggcaa cacccatttt aaacacgcca
     9241 ccaatcaacg ccccgattac gcacaacctg gtataaaagg agaaagtcgc ttagtcagac
     9301 ttgaacttaa acttattgcc gatgtagggc ttgtgggctt tccaaatgtg ggaaaatcta
     9361 ctcttataag cgttgtttca aatgcaaaac ctgaaattgc aaattatgaa tttaccaccc
     9421 ttactccaaa acttggactc gtagatgtag atgagtataa ttcctttgtt atggctgata
     9481 ttccagggat tatcgaagga gcaagtgtgg gtaaaggctt aggacttgcc tttttaaagc
     9541 acatagaaag aacgagcttt ttacttttcg tgctagatcc tatgaggcaa atgcctttaa
     9601 aagaacaatt tatagtacta agaaaagaac ttgaaaaatt ttccaatgaa ctttttgggc
     9661 gtaaatttgg catcatgatt tcaaaaagtg atagtgttcg tttaggagag gaatttgctg
     9721 agcaaattgc tttaaacatt aatgagttag acaattatct caaagaaata aataatccac
     9781 aaagcttttt aatcaaagtc tcaagccttg aaaaaacagg acttaaagaa cttaaattca
     9841 tgcttttaga agaaattaaa actttaagaa ataacaaata aaaattttaa caatctagga
     9901 agtgttttat attaaaaatt tcaaacactc cctatttttt caaaaaataa ctagtttata
     9961 tgaaattttg gctaaaatta taaaaatttt tcaaggaata agcatgaaaa gaatagttgt
    10021 taaagtgggt tctcatgtga ttagcgaaga aaacacttta agttttgagc gtcttaaaaa
    10081 tttagtcgca tttttagcta aactcatgga aaaatatgaa gtaattttag taacctcggc
    10141 ggctatttcg gcaggacaca ccaaactaga tatcgataga aaaaacctta ttaataaaca
    10201 agttttagct gctattggac aacctttttt aatcagtgtt tataacgagc ttttagccaa
    10261 atttaacaaa ctaggcggac aaattttact tacaggcaag gattttgact ctagaaaagc
    10321 taccaaacac gcaaaaaatg ctatcgatat gatgataaat ttaggaattt tgcctattat
    10381 caatgaaaat gacgctacag ctatagaaga aattgtcttt ggtgataatg atagtttaag
    10441 tgcttatgct acgcattttt ttgatgcgga tttgcttgtg attttaagcg atattgatgg
    10501 attttacgat aaaaatccta gtgaatttag tgatgcaaag cgtttagaaa aaatcactca
    10561 tattaaagaa gaatggctac aagcaaccat aaaaacaggt agtgagcacg gaacaggtgg
    10621 tatagtaacc aaacttaagg cagctaaatt tttacttgaa cacaataaaa aaatgttttt
    10681 agcaagtggc tttgatttaa gtgtggcaaa gacattttta ttagaagata aacaaatagg
    10741 tggaactttg tttgagtgat taatttatta aattctcttt taaaatcaaa taagctataa
    10801 ttaaaacttt taatttcaca caaagcgaaa aaatgaaaaa aattattttt atgggcactc
    10861 catcttacgc aacttgtatt ttaaaagcac tagtagaaaa tgaaaatttt aaactcgtag
    10921 cactttttac tcagcctgat aaagccgtag gtagaaagca aattttaact ccaagtgata
    10981 ctaaggcttt tttaagtcaa aattatccta gtattcctat ttttactcca agttctttaa
    11041 aagataaaaa tattataaga gagattaagg atttaaatcc tgattttatc gttgttgctg
    11101 cctatggaaa aattttacct aaagccattt tggatttagc gccttgtgtg aatttgcatg
    11161 cttctttact tccaaaatac cgtggtgcca gtccgatcca aagtgcgatt ttaaacaaag
    11221 atgaaaaaag tggagtttgc accatgctca tggaagaagg gcttgacaca ggtgctatac
    11281 ttgaaagctt agaatgtgat ataaaagata aaaattcaag tgaagttttt gaacttttag
    11341 caaatttggc cgctaagctc atcctctcta ctcttttaaa tttcgataaa atcaccccta
    11401 aaaaacaaga ggaaagtcta gcaacacttt gtagaaaaat caaaaaagaa gatgggctta
    11461 taaatttgca aaatgcaaga gaactttatc aaaaatatct agctttcacc ccttggcctg
    11521 gagttttctt ggaaaatgga cttaaattct tagaacttga acttgtggat gaattaaaac
    11581 aaaatgctaa gatgggtgaa attttagaat tagaaaaaga aagttttttg cttgcttgca
    11641 aacaaggagt tttgcgtatt aaaaaacttc aagaaagtgg aaaaaaagct cttgatggca
    11701 ggacttattt aaatggaaaa aggcttaaaa gtgaagatag tttgtgttga aagtatagac
    11761 tcaactcatc tttttttatg cgagcaaata cgcaatggaa agattgatga aaattttgct
    11821 atttatgctt tagaacaaac aaatggagtt ggaagtaggg aaaattcttg gcaaagctct
    11881 aaaggaaatt tacatctttc tttttgtatt aaagaagaag atttaccaaa agatttacct
    11941 ttagcttctg tgagtattta ttttgcttat ttacttaaag aagttttaca agaaaaaggt
    12001 tctaaaattt ggcttaaatg gcctaacgat ctatatttag atgataaaaa agctggagga
    12061 gttataagtg ctaaaatttc aaattttatc ataggcggta tgggtttaaa tcttaaattt
    12121 gcaccccaaa atacagcttt atgcgatata gaaatttcgc ttaaagattt agtgagtgag
    12181 tttttgcaaa aagtagaaaa aaaaatttta tggaagaata tttttagcaa gtatatgtta
    12241 gaatttgaaa aatcaagaaa atttagcgtc catcatgaag gtaaagtttt ttcacttgaa
    12301 aattcttttt tgtacgaaga tggttcaatt ttactaggcg ataaaagggt gtatagttta
    12361 agatgagcga aattattaca atagcaaatc aaaaaggtgg agtaggaaag actacaacag
    12421 cagtaaattt agccgcttct ttggctgtgg ctgaaaaaaa agtacttttg attgatgttg
    12481 atccacaagc taatgcgact acagggcttg gttttaatcg taataattat gagtataata
    12541 tttaccatgt ttttatagga agaaaaaagc tttcagatat tattttaaaa acagaattgc
    12601 cacaacttca tttagctcct tcaaatatag gtcttgtagg tatagaacaa gagcttgcta
    12661 aaggtgaaaa taatgagaaa aaaatgttac ttaaaaatca aattcaagaa gtaattgatg
    12721 agtatgattt tattattatt gattctccac ctgctcttgg aagtattact ataaatgctt
    12781 ttgcagcaag tgatagcgta attatcccta tacagtgtga attttatgcg cttgagggtg
    12841 tagctatggt tttaaataca attaaaatta tcaaaaaaac tattaattct aaactcaggg
    12901 ttcgtggatt tttaccgaca atgtatagct ctcaaaataa tctttctaaa gatgttgtag
    12961 atgatttgaa acaaaatttt aaaaaacaac tttttactat taatggaaac gaagatgact
    13021 ttattgtgat ccctcgcaat gtaaaacttg cagaaagtcc aagttttgga aagcctataa
    13081 ttctttatga tattaaatcg ccaggttctg ttgcttatca aaatttggcg tattctatat
    13141 taggataatt ataatggggt taaataaaga taggggttta agtagtttaa tcagtgatat
    13201 ggatactgtt tatagcaaag aattgggttt tgataaaaat caaagcacta tgatagaaat
    13261 tgatcaaatt tcacccaatc catttcagcc aagaaagaat tttgatcaag aagctttaga
    13321 tgagcttgct aattctatca aagaatttgg acttattcag cctattattg tatttaaaaa
    13381 aaataataaa tttattttaa ttgctgggga acgtcgctta agagcagtga aagcattagg
    13441 aaaaaaagaa attctagctt ttattgctga tattgatgag aataaactta gagaattggc
    13501 tcttattgaa aatatacaaa gagagaattt aaaccctatt gaacttgcta attcttataa
    13561 ggatttgatg caagttcata agattactca agagaattta gcagaactta ttcataagtc
    13621 tcgtactcaa ataacaaata ctttaagact tctgaattta gatattagaa ctcaagagtt
    13681 gattgcttct ggaaaaattt ctcagggtca tgctaaagtt ttggttggtt tagatcaaaa
    13741 agatgaaaaa atgttggttg atagcataat aggtcaaaaa cttaatgtta gagatactga
    13801 aaaaatagtt aaaaaaataa aaaataatga aagcttacct aatcaagaat ttgaagatga
    13861 aataaaaaaa ttaaaacaaa tactaaatcg ctttggattt gactgcaaaa ataaaaataa
    13921 tgattttgta attcatttag aaaatattga taaaattaaa aaattaatca aaatgcttga
    13981 aaagttttaa ccaaaatctt agctttttta tggtaaaata gtccttcaaa aattctaacc
    14041 aaggagaatt atgtttgaag atatgcatcc ttccataatg cttgctacta tagctatttt
    14101 tttggctatg atagttattt taaatagtat gctgtataag ccgcttttaa aatttatgga
    14161 tgaaagaaat gattctataa aaaatgatga gaataaagta aaagaaaatt ctcaagaagt
    14221 tttatgtgtg aatgatgaat tagaagttat tcatattaac actagagaag aaattcaaaa
    14281 aatcaaacaa agtgctatag ctgctgctaa agaagaggca gagcaaattc ttagaagcaa
    14341 gaaagaagaa ttagaaagaa aaatggccag cttttatgca gatttagcta ttcaaaaaaa
    14401 agagttacaa gaacatttaa acatacattt acctgagctt aagcaagctt tgcaaaataa
    14461 cataaagaaa atttaagagg agagaaatga gtaagttatt atttattata tttttgctac
    14521 ctttgtatgc ttttggtgca tcaaacggta gtggagaata tgatattatt ccaaggacta
    14581 ttaattttct aatttttgtg ggtatattgt attattttgt tgcaactcca tttaaaaatt
    14641 tttacaaaaa ccgtattgta aaaatttctt ctaaacttga tgaaattcaa aaaaaacttt
    14701 tagaaagtaa agctaagaaa ttagatacga tgaaaaaact tgaagaagct aaggcaagtg
    14761 ctgctgccgc tttaattaca gcaaaaaaag aagctgaaat tttagttcaa aatattaaga
    14821 aagagactca agatgagtta gatttacttc aaaaacattt tgaggaacaa aaagattatg
    14881 aatttagaaa aatggaaaaa gaattagtat caaatacttt aaatgaaatt ttttctgatc
    14941 caaatatgac attaaaacag agtgaaataa tagaacttat gatgaagaag gtatcttaaa
    15001 tatggaaaat ataattgcaa gaagatatgc aaaagcgata gcttcaagag ctgatataaa
    15061 tgatttttat cagaatttgt gtattttaaa ttctgctttt gttttgccaa aatttaaaaa
    15121 tattatagaa tctaatgaga ttaaaaaaga aagaaaaatg gaatttcttg attctttttt
    15181 tgatattaaa aattctagtt ttcaaaattt tttaagactt ttgattgaaa attcaagatt
    15241 agaatgcatt cctcaaatag ttaaagaact tgaaagacaa aaagctttta aagaaaatat
    15301 ttttgttggt attgtatatt ctaaagaaaa attaagtcaa gaaaatctta aagatcttga
    15361 agtcaaactt aacaaaaaat ttgatgcaaa tattaaacta aataataaaa tcagtcaaga
    15421 tgatagtgtt aaaatagaat tagaagaatt aggttatgaa ctttcttttt ctatgaaagc
    15481 tcttcaaaat aagctaaacg aatatatatt gaaaattatc taaggagaaa aagtaaatga
    15541 aatttaaagc tgatgagatc agttcaataa tcaaagaaag aattgaaaat tttgatttaa
    15601 atcttgaaat tgaagaaaca ggaaagatta tttctgtagc tgatggtgtt gctaaggtat
    15661 atggacttaa gaatattatg gctggagaaa tggtagaatt tgaaaatggt gataaaggaa
    15721 tggccttaaa ccttgaagag tcgagtgtag gtattgttat acttggaaaa ggagaaggtt
    15781 taaaagaagg tgcttctgta aaaagactta agaaattact taaagttcca gtaggtgagg
    15841 ctttgattgg ccgtgttgta aatgctttag gtgagccaat tgatgctaaa ggtgtgatca
    15901 atgctaatga atatcgtttt gttgaagaaa aagcaaaagg tattatggcg agaaaaagtg
    15961 ttcatgagcc tttacataca ggaattaaag ctattgatgc gcttgtgcca attggtcgtg
    16021 gtcaaagaga gcttatcata ggtgatagac aaacaggtaa aactactgtt gctgttgata
    16081 ccattatatc tcaaagaggt caaggagtta tctgtatata tgttgcaatt ggtcaaaagc
    16141 aaagtacagt ggcacaagtg gttaaaagac tagaagaaca tggtgctatg gaatatacta
    16201 ttgttgtaaa tgccggtgct tcagatcctg cggctttaca gtacttagct ccatatactg
    16261 gtgtaaccat gggtgaattt tttagagaca acgcaaaaca tgctttaatt gtttatgatg
    16321 atttgagcaa gcatgctgta gcttatcgcg aaatgtcttt gattttacgt cgtcctccag
    16381 gtcgtgaagc ttatccaggc gatgtttttt accttcattc aagattgctt gaaagagcaa
    16441 gcaagctaaa tgatgaatta ggtgctggtt ctttgacggc attgccgata attgaaacac
    16501 aagcaggaga tgtttctgct tatattccaa ctaatgttat ttcaattaca gatggacaaa
    16561 ttttcttaga aactgattta tttaactcag gaattcgtcc tgcaattaat gttggtttat
    16621 cagtatctcg tgtaggtggg gctgctcaaa ttaaagctac aaaacaagtt tcaggcacat
    16681 taagacttga ccttgctcaa tatagagagc ttcaagcttt tgcacaattt gctagtgatt
    16741 tagatgaggc aagtagaaaa caacttgaac gtggacaaag aatggttgaa ctcttaaaac
    16801 aaccacctta ttctccgctt agcgttgaaa aacaagtagt tttaattttt gcaggaacca
    16861 aaggtttctt agatgatatt gctgtttcta gaattaagga atttgaagat ggaatttatc
    16921 cttttattga ggcaaaacat ccagatattt ttgagcaaat tcgctctaaa aaagctttag
    16981 attctgattt ggaagaaaaa ctagctaaag ccattaatga gtttaaagca aatcatttat
    17041 aaggtctttt atgtctaatt taaaagaaat taaaagaaaa attaaaagtg ttcataacac
    17101 tcaaaagact acaaatgcta tgaagctagt ttctactgct aagttaaaaa aagcagaaga
    17161 agcagctaaa agatcaaaaa tttatgcaca aaaaatcgat gaaattttga gtgaaatttc
    17221 atttcagatc aataaaattg ttcacaatga agatgatgtg cgtttatctt tgtttcataa
    17281 aaaagaacaa attaaaaccg tagatttaat atttatcact gcagataaag gcttatgcgg
    17341 tggttttaat attaagactt taaaaacagt aagtgaaatg ctaaaagaat atgaagcaaa
    17401 aaatattaat attcgtctta gagctatagg taaaactggg attgaatatt ttaattttca
    17461 aaaaatagaa ttgttagaga aatatttcca tcttagttct agtcctgatt atgagaaagc
    17521 atgtgaagta attcatgctg ctgtagatga ttttttaaat ggaaatacag atgaagtgat
    17581 tttagttcat aatggttata aaaatatgat tacccaagaa cttaaaatta atcatcttat
    17641 tccagttgag ccaaagagta ttgaacagac tcataattct cttttagagc ttgaaccgga
    17701 aggaactgag cttttagaag atttaatgaa aacgtatttt gagtataata tgtattatgc
    17761 gttaatcgat tctttggcgg cagagtatag cgcaagaatg caagctatgg ataatgcaac
    17821 taataacgca aaggcaagag tgaaacaact aaatttagct tataacaaag caagacaaga
    17881 atccattact actgagctta tagagattat cagtggtgtt gaatcaatga aatagtaaaa
    17941 ttttaaggag aagataaata atgcaaggat ttatttcaca ggtattaggt ccggttgttg
    18001 atgtagattt taacgactat ttacctcaaa ttaatgaagc aattgttgta aattttgaaa
    18061 gcgaaggaaa aaaacataaa cttgttttag aagtagcagc tcatttagga gataatagag
    18121 ttagaactat tgctatggat atgacagatg gtttggtaag gggcttaaaa gctgaggctt
    18181 taggtgctcc tattagtgtt cctgttggtg agaaagtttt aggaagaatt ttcaatgtta
    18241 ctggagattt gatcgatgaa ggtgaagaaa tttcttttga taaaaaatgg gcaattcata
    18301 gagatccacc agcttttgaa gatcaaagca caaaaagtga gatttttgaa acagggatta
    18361 aagttgtaga tttacttgct ccttatgcaa aaggtggtaa agtaggtctt tttggtggtg
    18421 caggtgttgg taaaactgtt attattatgg agcttattca caatgttgca tttaagcata
    18481 gcggctattc tgtatttgca ggtgtgggtg agagaactcg tgaaggaaat gacctttata
    18541 atgaaatgaa agaaagtaat gttttagaca aagttgctct atgttatgga caaatgaatg
    18601 aaccaccagg ggcaagaaat cgtattgctt taacaggttt aacaatggct gagtatttta
    18661 gagatgaaat gggtcttgat gtgcttatgt ttattgataa tatctttaga ttttcacaat
    18721 caggttctga aatgtcagca cttttaggaa gaattccatc agctgtgggt tatcaaccaa
    18781 ccttagcaag tgaaatgggt aaattccaag aaagaattac ttcaactaaa aaaggctcaa
    18841 tcacttcagt tcaagctgtt tacgttccag ctgatgactt aacagaccca gctccagcaa
    18901 ctgtttttgc tcacttagat gctacaacgg ttttaaatag agctattgct gaaaagggta
    18961 tttatcctgc agttgaccca cttgactcaa cttcaagaat gcttgaccca aatatcattg
    19021 gagaagaaca ttataaagtt gctcgtggtg ttcaatcagt gcttcaaaaa tacaaagatt
    19081 tacaagatat catcgccatt ttaggtatgg atgagcttag cgaagaggat aaacttgtag
    19141 ttgaaagagc aagaaagatt gaaaaattct tatcacaacc atttttcgtt gcagaagttt
    19201 tcacaggtag cccaggaaaa tatataagcc ttgaagatac aatagcagga tttaagggaa
    19261 ttttagaagg taaatatgat catttaccag aaaatgcttt ctatatggtt ggaaatatag
    19321 atgaagctat tgcaaaagcg gataaattaa aaggttaatt tatgaacgat ttgattaatt
    19381 tcgagatagt tacgcctttg ggtgtaatct atcaaggaga agtaaaatct gttactttac
    19441 cgggtagtga aggagaattt ggcgtgctta aaggacatgc tgctttggtt tcttctttaa
    19501 aatctggagt aattgatatt gaaaaagctg atttaaacca tgaattaatt gctattgatg
    19561 ctggacatgc aaaggtagat gaagataaga tttgcgtgtt agcaaagggt gcggtttggg
    19621 tttgtggaag tgatgaaagt gagattgaaa aaaatcttgc tcaagcaaaa gatttgatta
    19681 aatctatgag ttctgataat gcagctttag cagcaacttt ttcaaaactt gataatgcaa
    19741 ggatgcatta atgaattttg aagctatatt tcattttttc aatagttcaa gtattattac
    19801 ttatatagtt ttattatggc tttctttata ttttatttta gcatttagta ttttgtttgc
    19861 tagattgact tatttggcta catggagaaa taaggaaaaa gaaagtttag aaactttgct
    19921 cttgggtgag aaggatttaa gtcgtactga ttcgatttta agaaagtgca atgatacaac
    19981 ttcaaatcat ttagaaatct ataaaaattt agcaagtcgc cgcgcttctg ctggacttac
    20041 ttggcttagt attattgctt caacttcacc ttttataggt ctttttggga cagttatttc
    20101 tatacttgaa acttttggtg ggcttggaac tcaaaattct ttaagtatca tagctcctaa
    20161 aatcagcgag gctttagttg ctacaggttg tggtatttta gtagcaattc ctgcttatac
    20221 atttcatctc atcattaaaa gaaaagcttt tgaactttta agcattattg atagcgagat
    20281 taaagttata agttcgagta aataaggtta aaaatgccat ttgatgatga aaaacctgaa
    20341 cttaatatca cacctttagt agatattatg cttgtattgc ttgcgatttt aatggtaaca
    20401 gctccaagca ttacttatga agaaaaaatt aatcttccac aaggtagtca aaaaaatacc
    20461 agcactccaa ctgttaagag tttaattatt agtattaatg caaaaaaaga aattttttta
    20521 aatcaagaaa aatacgattt tataagtttt gctgacaatc ttgctcaaag aaaagcacaa
    20581 tttaataccg aagatccggt ttttatacgc gctgataaaa gcttaaaata tgacgatgtt
    20641 atttcagtct taagaagtgt aaaaaattta ggatttaata aagttgcttt acagactgaa
    20701 taatcatgaa aaattatagt ttgagtaatt taaattcgtt tttacttgct ttagcaatat
    20761 atattagtat agtaattctt gtttttttta gacttgtaag cgaggttgaa cctgctatac
    20821 aatatactga tataaaagat agttttgtag atattgaact tgctgaacca tcaaaacaag
    20881 ttattactca aagcaacact cctaaagaaa tacaaaaacc aacagagcaa attgatatag
    20941 aaaagctttt tgctcagact acaaataaaa cagttaaaac tgaagatatt gaccaaaagg
    21001 caagtaattt taatgagctt tttggaaata ttaaagaaat acaagaagaa aagactacaa
    21061 aaattcaatc aagtgctaaa tcaggagctt ctagtgccgc aaaacctcaa gcttctgaac
    21121 ttgtaaaaca acttaatgat agtttacttc aagaagaaag ttcaacgcaa ggcgaaagca
    21181 caaaggcgca aaagattgga atttatgatg aatttttagg gaaagttgtg cgtattatca
    21241 ctcaaagatg gactcagtat tatccaaata gtgaaaaaat ttctgttaag gtaaaaattt
    21301 ttattgatga aaatggaaaa tttggctata cttcagttga aaaaagtggg aatcctttat
    21361 atgatgctaa agtggctgaa tttttagaaa gtcaaaaagg taaatttatt acttatcctc
    21421 cgcaaaataa aaatataagc attaccatga atttaagaga tgaagtaaaa gttaaaaatg
    21481 attaggagaa aaaaatgaaa aaaattgtag caattttttt agtcttttta ggaagtcttt
    21541 gggcagaaga tccagtgatt gatgttgtta attctggtgt agttttacca aagattattg
    21601 ttaaagacaa ttcaaattta agtgatgaga atttaaagaa aagcttttat aatatcattg
    21661 tgaacgattt gaaagtaagt tcaaactttg aagttgttgc taatgcaact gagacaagta
    21721 attatacttt tgaatacact ttaaataaaa atggtaacac tttgagttta aatgtaaaaa
    21781 taaaagctgg cggttctgat aagtcagagc aaacttatac tttaaatggt ttagagcaat
    21841 atccattttt ggcacataaa agcgtcaaag cttctgtaaa tgcgttagga cttgcacctg
    21901 ttgattggat ggatcataaa attttgatcg cgagaaattc tagctctaaa aaaagtcaaa
    21961 ttattatggc tgattatact ttaacttatc aaaaagttat tgttgatggt gggcttaatt
    22021 tatttccaaa atggggaaat aaagaacaaa ctctatttta ttatacagct tatgatcatg
    22081 ataagccaac tttataccgt tatgatttaa ataccaataa agctagtaaa attttatcaa
    22141 gtggcggtat ggttgtagca agtgatgtga gtgtagatgg aagtaaacta cttgttacca
    22201 tggctccaaa agatcagcct gatgtttatt tatatgactt aaataccaaa aatctaacac
    22261 aattaactaa ttattctggt attgatgtta atggaaattt tattggctca gatgatagta
    22321 aagtggtatt tgtaagcgat cgtttaggat atcctaatat ttttatgcaa gatttaaata
    22381 gcaatagtgc tgaacaagtt gtttttcatg gtagaaacaa ttcggctgtt tcgacttata
    22441 aagatttttt ggtttattca agtcgtgaac caaatcaagc aggtgttttt aatatttatt
    22501 tgatgtcaat taatagtgat tatattcgtc aacttacagc aaatggaaaa aatttatttc
    22561 caagattttc tagtgatggt ggaagtatag tatttatcaa atatttaggt gcgcaaagtg
    22621 ctttgggtgt tattcgtgta aatgcaaata agacttttta ttttcctctt agggttggaa
    22681 aaattcaatc aattgattgg taaaaatttc aattttaggt taaaattaat taaaaattag
    22741 atataataat aagaatttat taactttgaa aggtcataaa tgaaaaaaat tctttttact
    22801 tcaatcgcag ctcttgcagt tgttattagt ggttgtagca caaaaagcac tagcgtaagc
    22861 ggtgatagta gtgttgattc aaatcgtggt tcaggtggaa gtgatggttg ggatattgat
    22921 tcaaaaattt ctcaacttaa tgatacttta aataaagtat attttgattt tgataaattc
    22981 aacattcgtc ctgatatgca aaatgttgta agcacaaatg ctaatatttt taacactgaa
    23041 gtaagcggtg taagtattac tgttgaagga aactgcgatg agtggggaac cgatgaatat
    23101 aaccaagctc taggtttaaa aagagcaaaa gctgtaaaag aagctttaat cgctaaaggt
    23161 gtaaatgctg atagaattgc tgttaaaagc tatggagaaa caaatcctgt gtgtactgaa
    23221 aaaactaaag cttgcgatgc gcaaaacaga cgtgctgaat ttaaattatc aagataatta
    23281 atgaaaaaaa tattcacagt agctcttctt ggagctactt tactttatgc agaaagctca
    23341 gcttttggtg caggagatat aacaagcaat tcttcttatg gtttaacttc aaatgaaaaa
    23401 ttatttaaag aaaagttaga taatttaaat aatgaaaata tacaaacaaa tgctagaatt
    23461 aatgaaatta acgaaagaat cgagggttta caaagcactt tagaaggtat aaattctcaa
    23521 tatgccaaat caaattctag attaagtcaa gttgaagaga ataatcaaaa tattgaaaat
    23581 aattttacta gtgaaattca aaaattaaag gcttatgttg aagaaagtag aaaaattcaa
    23641 gaagctaata ataagcaagt aaaaaaagtt ttagccgaac ttagtttttt agtagatgct
    23701 attaatgcaa attatgtttc taaaaacgaa ttaaatgatg caaatttaag cgttaaaact
    23761 attacaccta gtgttgttgt ttcaactaca gattcaaata gtaccattga aaacaataat
    23821 actcaaaata cccaagatga taaagcaaaa caaattgatg aatcttggaa aaagaaaaaa
    23881 aataatgaaa ttttagaatt agcgataaaa gatgttgata aaaatgcttt tgaagattcc
    23941 aaagcaaaat taaattttct cataacaaag cagtataaac ctgcaagagc aaatttttgg
    24001 ttaggggaga tcgagtataa acaaaaaaat tataacaatg ctattgttta ttataaaaaa
    24061 agttcttctt tgagtacaaa aggagattat ttcccaaaac ttttatatca tactgccatt
    24121 tcattggata aaacaggtga tacaaaaaca gcaaatggtt tttataaagc tttaaaaact
    24181 aattatccaa attcacccga agcaaaagct tcacctaata gaaaataaat taaggagata
    24241 aaatggctat agaaaaaaat agtgtagttt caatgtttta tgagttaaaa gatgcaaata
    24301 caaatgaagt tttagaatca aatttatatt ctcaacctat ttcttttatt ttaggcaaag
    24361 gtcagatttt agaaagctta gaagaagaag tgatgaagct tgattgccct agcaatgctg
    24421 atgtggtaat taaaaaagaa aaaggtttag gcgaatacga tgaaaatgcg gttcaaactt
    24481 taccaaaaga gcaatttgca ggtattgatt taaaagtagg tatggaactt tttggcgaag
    24541 gtgaaaatgg cgaaaccgtt cgtgtaactg taaaagaaat tggtgaaaat gatgtgacaa
    24601 ttgattataa tcacccttat gcaggtcgtg atttgctttt ttctttaaat atcgtagatg
    24661 ctagagctgc aagtgaagat gaaattctta caggtattat cgcaggaagt catagttgtg
    24721 gttgtggaag cggacatggg cacgatcatc atcacggaca cggacatggt ggcggcggtt
    24781 gctgtggtgg cggtggttgc ggttgtcatt aatgaagact gcgtttatat ttccaggtca
    24841 aggctcacaa agtcttggca tgggaaaaga tttttatgaa aactctataa aagccaaaga
    24901 actccttcaa aacgcaagtg atttttgtaa gattgatttt aaacatttgc tttttgaaga
    24961 aaacgaaaaa ctcaatcaaa gtgaatttac tcaacccgcc atcgttttaa attccttaat
    25021 ggcttatagt gttttacttg aaaaaaaacc tgatttaagt tcgaaatttg ctttagggca
    25081 ttctttggga gaattttcag ccttagctgt taatagtgct tttgattttt tagaggctct
    25141 ttctttggtc aataaaagag gactttttat gcaagaagat tgtgcaaaag ttgaagcagg
    25201 tatgatggtg gttttggggc ttgatgatga aaaggttgaa gagctttgtc aaaaagcaca
    25261 aaaagaaaac aagcaaattt tcgctgcaaa ttataactgc gatggacaaa tcgttgtagc
    25321 aggtttaaaa cctgatttag caagttatga aagtgtattt aaagaagcag gagctaaaag
    25381 agctatgctt ttaaatatga gcgtggcaag tcattgtcct cttttggaaa atgcttcagc
    25441 taagctttgt gtggagcttg aaaaggtatt aaaaccaaat tttaaagccg taatttctaa
    25501 tgcaaatgcc aaaatttata caagcaaaga agaagccctt gagcttttaa aagcacaact
    25561 tatctctcct gtgctttata aacaaagcat taaggcatgt gaaaatgaag tagattattt
    25621 catagaattt ggcgcaagtg tgcttaaggg tttgaataaa aaaatcactt caaaagaaac
    25681 ttatgcttta acaaatatga atgatattga tgaattttta aaggttgtat gatgaaaata
    25741 gcaattttag gagccatgag tgaagaaatc actcctttac ttgaaacact taaagattat
    25801 acgaaaatag aacacgctaa caatacttat tattttgcaa agtataaaaa ccatgaactt
    25861 gttttagcgt attctaaaat tggcaaggta aattctactc ttagtgctag tgtgatgata
    25921 gaaaaatttg gcgcacaagc tttgcttttt acaggagttg caggtgcttt taatcctgaa
    25981 cttgaaattg gtgatttgct ttatgcaaca aaattagctc aatacgatct tgatattacc
    26041 gcttttgggc atcctttggg ttttgttcca ggtaatgaaa tttttatcaa aaccgatgag
    26101 aaattaaaca atcttgcttt agaagttgct aaggaattaa atatcaaact gcgtgcaggc
    26161 attattgcaa cgggtgatga gtttatttgc gatgaagcaa aaaaagcaaa aatcagagaa
    26221 attttcaatg ctgatgcttg tgaaatggaa ggcgcaagtg tggctttggt ttgtgatgcc
    26281 ttaaaggtgc cttgttttat cttaagagct atgagtgata aagcagggga aaaggctgaa
    26341 tttgattttg atgaatttgt gatcaattca gctaaaattt cagccaattt tgtgcttaaa
    26401 atgtgcgaga aattatgata aatcttagca aaaaacttat acgccaagtt gcacaagcta
    26461 atgctaaatt tggacttatt aaagatggag atagggttct tttagggctt agtggcggga
    26521 aagattcttt ggctttagcc catcttttaa atcgtatgca agctcatgct ccttttaaat
    26581 ttgaacttga agcggtaact ttgagttatg gcatgggcga ggattattct catcttcatg
    26641 cacattgtga agaacacggc attaaacata gcgtgcttga ttcaaatatt tatgaagttt
    26701 caggcgatac cataagagaa aattcaagtt tttgtagtta tttttcgaga atgcgtcgtg
    26761 gagctttata tacttacgct cttgaaaaag gttttaacaa gcttgctata gcccatcatt
    26821 tagatgatgc agcagaaagc ttttttatga attttattca taatggagct ttaagaacct
    26881 tagcgcctat ttatcaaagc aaacgcggta taactgtgat acgccctttg atttttgtgc
    26941 gagaaagaca gcttagggat aatgctacgc aaaatgaact tagcgtgata ggaaatgaat
    27001 tttgtcctgg tatgaaactc agtgaaaaaa atgtaaaatt tccacacgct agagaagaag
    27061 ctaaacagct tttagcaaat ttagaaaaag atcatcctaa gctttttaca agtttaaaaa
    27121 ccgcttttgc caatttacac acggagagtt tttggcttca aaaggcataa aagcatgaaa
    27181 aaagcttttg ttttagtgga ttatcaaaat gattttattg atggaagttt aggttttgat
    27241 aaggctttaa aaatcaaaga aaatattctt aaagccttaa atcaaatcga ttttaataac
    27301 acgcatttgc ttttaaccta tgatacgcat gatgagcatt atctacaaag taaagaaggt
    27361 ttaaatttgc ctgtaaaaca ttgcattaaa gagagtttgg gttggcaaat gccaaaggaa
    27421 tttgaacctt ttttacaaaa agctcataaa attttttata aaaatacttt tggtagctta
    27481 gaattagcta atttcataca aaaaagtgat tatgaagaac ttcattttgc agggcttgtt
    27541 tctcatattt gtgtgttttg taatattatt ttagcttttg gtgctaagcc taatgcaagg
    27601 ataattttac accaaaattt aagtgcaagt tttgatgaaa atttagaaaa atccgctttt
    27661 gatatactta gggcttatgg tattgaaatt gtttaatgca aggctttata cttcatactc
    27721 aaaaagttaa agatgaggat ttgattgttt atattttaag tcctaaaatg cttattaagg
    27781 cttatcgttt ttatggactt agacattcta gtattttaag cggctataaa atcgactttg
    27841 ctttagaaga aaatcctagt tttttaccaa gacttaaaga tgtattgcat ttgggatttt
    27901 tatggattat gcaaagggat aaaatgctta tttggcaaga atttatccgt cttttatata
    27961 ggcacttaaa agatgtagaa gagcttgata gtttttattt tgatttactt gatgagtgtg
    28021 tgaaaaggtt tgaaaaacaa aatccaaagc gtgttattgt tgatgcttat ttaaaaattt
    28081 tggaatttga aggaagattg cataaagatt ttttttgttt tgcctgtgat gagaaaattc
    28141 aaaattccat tacattgcta agggcttttt taccttcgca ttctcaatgt gctttaggat
    28201 ttgagtttga agagaaaaaa ctaaaacaat tttatagtag taaaaattgt gcgatttttg
    28261 atgatgaaga aatagaaaat ttatatcatt tgattaagga aggtttatga tattaagtga
    28321 tgaaaaatgt gattttttag aatctatagc aagtttttta agtcctaaag atgtggagct
    28381 tgtctttgtg gatagtaaag aaatgcaaga aattaactta gagcaaagaa aacaagataa
    28441 aaccactgat gtactttctt ttccacttga aaatatcgat gagagtttgc ctttgggttc
    28501 tgttgtgatc aatgtggatt tggcaaaaga aaaggctaaa gagttagggc atagctatga
    28561 agaagaaata agcttgcttt ttatccacgc tatgcttcat ttgttaggtt ttgatcatga
    28621 aaatgataat ggagaaatga gagaaaaaga gaaagaactt atagagcatt ttaatttacc
    28681 taaaagtttg attgtaagga ctttggaaga ttaagtaaga tttttttcaa gggctagaag
    28741 acttgcgctt tatattttaa atatatgagt aaaaatatta aaaaaaatca tttttgccga
    28801 tttactttag aataaaattt attccaaggt gataaagatg atagtatttc ctctaagctc
    28861 ttttaataga tattttggaa acaatccttt gcaaacactt accaaaataa gagatgaaag
    28921 tattgaaaat ggaaatcccg agcttacaaa aaaacaaaga gaagaattag gtaatgattt
    28981 gatagatttg tataagattt ctaaaaaatt cagcgataaa atagaattag tcgagggttc
    29041 aatagaagat aagcttagaa acaatgaatt actagaatca gaagttaaaa atttatttca
    29101 atggatggat gaaaatgcta aacaccctcg ttggatgcat attgatggcg tgagttatga
    29161 tgaagcttat gttaaaattt ttcacacaag caaaagtata gatgaattta aagaaaaata
    29221 tcttgagctt caaaaaaaat attttgttga ttttaacaat attgattcat cgcagaaaaa
    29281 actgcaagaa acttcagaag aagacaaaaa agctttcaaa cctatacaag tagaaagtaa
    29341 aagcgaaacc tacaaagatg ataataaaat gaatgagctt ttaagaaaac tactagaaac
    29401 taaatttggc acaagcgatg agctagaaat tctttttggt atgaatttta gcaatgataa
    29461 tgcaggggaa tttaataaaa ttctttctca aaacacttca gcaaaaatta tagatattaa
    29521 ggcttaagat tttttaaatt ataaaaatca atcaagttaa actaaaaaat tcttctattt
    29581 tttttcgcat ttcttcgaca ttgtcgatac gattaacggt atctctaaag gctgaagcgt
    29641 ctttatgccc tttagaatac tcgtgtaaat gcttgcgaaa tatacttacg ccttgatctt
    29701 tgtagtgttt tatcatttca tcaaaatgag tgagtatgat ttcttttttg agtttttcat
    29761 ctacactttt accgcttttg atttcataaa atatccaagg atttcctacg cttgcacgcc
    29821 ctatcatgag tccatcacat tttgtgattt tataaacttc tttagcgttt tgtgcgttaa
    29881 tatcgccatt tgcaatcaca ggaattttca cactcgcttt agcactagca atggatccat
    29941 aatcggcttt tccgctataa agctgttttc ttgtgcgtcc gtggatactt ataaaatcca
    30001 cccccaagct ttcgcaaatt ttagccattt tttcaggata tttttcatta aatcctagtc
    30061 gaaatttcac acttgtaagg ctttttttat tgttttcttt aatcactcct acaagatttt
    30121 taaaaagctc taaattttct agcaaagcac tgccagcaca ttgtttaaca actttattta
    30181 cagggcaacc gcaattaaaa tcgatcccat ctacaaaatc catttcattt agcatttgca
    30241 ctgctttttt tagcacttct ttatctccac ctgcaatttg gactatatag ggattttcta
    30301 attcagctct ttctagcata tgtaaagttt tagaactttc ataaactaag gcattagaac
    30361 ttatcatttc acttatggta atatcagcac caaatttttt tactacatta cgaaaaggca
    30421 gatctgaaaa acctgccata ggggctaaaa acaggggttt tttgctaaaa tctatcattg
    30481 tatgagttga tttagatcga ttttgatatt tttttcacgc aaggctaaaa aggctttaaa
    30541 atcattaaat tttttatcat cattgtgaat ttgttctctt aactcatcta aaagtccaaa
    30601 ttcagccaaa agatataaat atgctcttaa agcttcgctt ttttcatttt taattttgtt
    30661 aaaaattcct aaaatagcat caggatttaa aagtttagta cttagttttg ctgcattaag
    30721 atagtctttt tcgcttaata tgttgtgtga aagtaaaact tcatattctg ctacactaag
    30781 ttctaaattt ccttctttaa aacgcttgat aagtgtgaga acttcagaag gctttttagg
    30841 gatttttaca tttttaattt gctcataact agctttttct ataagagtgt taaaagcaat
    30901 ttcttcaaat tcatctttga tttcattaag gtttttaagt ttgttatagg cataatttgc
    30961 atcatttttg agatgatttt tttcattttg caaatataaa acattgttat tttcgagttt
    31021 aaatttgcta aggttaaaaa attcgttttt atttaaacca tcaataagat ctaaaatttc
    31081 attgatttta tttgagtgtg gaattttttc atgtgttttt atggttttaa aaagttgtgc
    31141 tacagatcta aattcttttg tttgaaaagt ggttttaaga tctttttcaa ggagtaaatc
    31201 ttgagtataa gcttcaaatt tagctgcatc tttaaaaaaa tgcttaaatt ttaaataacg
    31261 caaaaatcca taaaatgcta tgtgtaaaac ggctaaaatc atataaataa ataaaggaat
    31321 aacaagccat atcataatag gtagttcaaa ggtataagtg ctgatattta gagtatagct
    31381 tcctagttct agatgccaag caaaggcaaa aataagtgct atataaataa aacttgcaag
    31441 taagaagagt ttaattttca tgtttttttc cttgttctgc aatttgacgg caagtgatac
    31501 aatatcttgc gtgaggtttg acttttagtc tttgagagtc gatttcatca tcgcaagatt
    31561 cgcaaattcc ataagtgccg tttttgattt tatctaaaga atcttcgatt tctataagtt
    31621 cttctttgag attggtgctg atagcaaagt caatttgaga tcctgtttct atgacagaaa
    31681 aatccacact atcgcttggg acgctattgt gaagagcttc gatttcattt gaattgcttt
    31741 gcaaattttc taagatggct ttttttcttt cttctaaaat atttttgaaa ttttgtattt
    31801 catttttttt cattttaaaa ctttctattt gtgataaggg tgattgttgt tgatgcaaaa
    31861 tgcacgataa atttgttcta aaagtaaggt tttaacaaat tgatgtgcta aagtaagttt
    31921 gcttaatgat agtctaaaat ccaaactttg attaaattct tctcttaaac cataagcacc
    31981 tcctataaaa aaacttaatt catttttatc ttggatgagt tttgcaaatt ctatacttgt
    32041 aagatctttc cctttttcat caagagcgat acaatagcct tttttataag gcataaaagc
    32101 ttcttcatag cttttttttg cttctatggc atttaaattt tgagctaagg ctattttttt
    32161 attaaaaaca tttatttctt ttaaagtggc gtatttggag atgagtttag agtatttctc
    32221 actacaagtt ttaaattcat cacttttttg aatacaaaag atattaactt gcaaattatt
    32281 ttccactaaa aaattttagt acatcgctaa gatattgttt ttgttctcct ctttcaacta
    32341 tggcatctat aagtccatgt tctaacaaga actctgcttt ttgaaaacct tcaggtaaat
    32401 ctgctcctat agtttgttta ataactcttg caccagcaaa acctactaaa gcttcaggtt
    32461 cagcgatgat taaatctcca agccaagcaa aagaagcact tactccaccc atagtaggat
    32521 cggttaaaat gctaatataa ggaagttttt ctttgctaag aagtttaagt gcagcactag
    32581 ttttgctcat ttgcatcaaa gaataagtac tttcttgcat tctagctcca ccgcttgcac
    32641 ttacgatgac aagagaagtt ttgcttgtga tagctctttg tatagctcta acaatttttt
    32701 ctccttcaac agaacctaaa gatccgccca taaaagaaaa atcaaataca acaagttggg
    32761 tttttaaacc attgatttca cattctccac tgatgacaga actttttcta cctgttttac
    32821 tttcaccttc gctaaggcgt tttttatagg atttgctatc aacaaatttt aaaggatcta
    32881 tagcttctaa atttgcatca tactcaataa aactgccttc atcgcttaaa agtttaatac
    32941 gttcatcagc tgaaattctc atgtgataat tgcatttagg acaaacatta aaacaagatt
    33001 ctatttcttt ataatacatc aaagcatgac aactttggca ctttacccag tgatttggcg
    33061 cttctttaac gctaggttgt tgtcttctta tttttgaaaa aatatctgca aaattcatat
    33121 attcacctaa ttatttttta aaaattctaa gattatatca aaaatttttt tgtcttggct
    33181 taggagaagg aaattttcat ttttttctat atataaattt tgatgaattg ctaaagcagc
    33241 tgctgtatca aaaattcgtg tttttccaag aattaataca aaactaaaat acgaagcata
    33301 agcaagactt aaggctgttg cacccaaaga gcgaaatttt aattgatttt ttgttaaaaa
    33361 atcgagaagt tctggataaa gtgaaatttt ttcaactata cctattttag aaaatagatt
    33421 aggtgttaag ggtgagtatt ttggatcgga aagattggat ttaaaagctt gtttgttatt
    33481 aaaagcaaaa atttcttgac tgacaagatt gcaaacaaaa gcgctttttg cctgatcttt
    33541 ttccataaga gctatagaag ttccataaaa tggtatttta gaaacaaaat ttgaacttcc
    33601 atccaaagga tcaagaatca tttgttttgg gctagctttt ccgatcaatc cgctttcttc
    33661 agaaaaaatt tgtccaaaac aactaagata ttttatgaaa atttgttcac attttaagtc
    33721 aagctcatag ccttgatttt tatcatagcc taatttagag caaagtttaa gatcattttg
    33781 tgggatattg tttagatact tgcgtatttg caaatttgca ttcaagcaag catctaaaaa
    33841 ttctttcatt aaaagcgtgt tccaagatta aattcaaaac tattagtatc atcacctttt
    33901 ttatcattaa gaggtttggc aaatacaagt tgtaaaggtc caataggtgt aatccattca
    33961 atgcctatac ctgtactcat tctttttatt tcatctaaat ttttacgccc tatcatacca
    34021 taatcaaaaa acacgctacc acgaagtttg attctatcaa tcaaaggaaa actaagttct
    34081 acggaattgg caaaagctat agttccacct acttcatctc cccattgatt tttaggactt
    34141 actgttctgc tttcaaaacc gcgtatcgat ctaataccac ctaaataaat tctttggtta
    34201 attggtaaat aaccttcatc ccatacttta taaaaactcg ctttatagcg ataaataaga
    34261 tcatatccta tatagtcttg caaaccttga taaaagttaa atttagagct tgatgaaata
    34321 aattcttgat ctccgccaag tccagcgtat tctaaactag ttgaagcaat aatacctgat
    34381 cgtggcagat aataatcatc tgtattgtta aaggtgattg ctggagttat agagctttta
    34441 atacttttgc caagttcata tcctgttctt aaaagagttg gacttaagtg atatatatcg
    34501 ctttgttcaa gattataagt taagcttaca ttatagtatc ttgcaaattg gcgtccaact
    34561 gttatatcaa agccgtaatt tttttctgaa taattatccc attcatagtc atttgaataa
    34621 agtgttccac ccagactata ttgactatca agaacgcgtg gatttacgag actaatcctt
    34681 cccgataaag tatcatcgct tttatctacg cttacagagc tttttattcc tgaaccaaag
    34741 atatttgtat ccgataaaga agcgttaagc aaaataccat cgcttgatcc atagccaatg
    34801 cctccagaaa tagctcctgt agaagcttct ttaacatcaa caatcaaatc aatatgtgta
    34861 ttatcaactt tttcttcttt gatatttaca tcgtcaaaat aagaagttct ttttaaagca
    34921 ttttttgact cgcttaagtc tgttctattg tataaattac cttctgttat atataattct
    34981 cggcgtatga cgcgatctac ggtgcgtgaa tttcctgaaa taataacatt tcttatataa
    35041 actttatcgt gagggattac tttaaataca acggtggctt cttgagtttg atcatttttt
    35101 tgaatatcag gatagacttc tacaaacgca taacccaaat cagcactttg tgtttctatg
    35161 gttttaacat cttttctaat gtcttcgata ttgatagttt tgccagcgct tgatcttaaa
    35221 tcttttacgg tttgtgcatt ttgcttatca tcaaataaag gattttctat gcttatactt
    35281 ttaattttat aaggctttcc ttctttgata aaataagtca aatttgcttg ataagtatct
    35341 gtgtaggttt taagataagg ggaggatact tgaacatcta aatatccttt tttcatatat
    35401 tcatcagcaa ttcttgaact atcgttacta agttcaaaaa cttttaattt tccatcattg
    35461 cgtccccaca tccatcccat aaattctttt tctttgttaa caacagcagg ttctatatca
    35521 gaatatgaaa atttctttgc tccacttaaa tgaacattat caataatgat attttcacca
    35581 cgatttacta taaattcaag ctctagtcca tcagtatttt ctaaagtctt ttttttgtat
    35641 tctacaatag tatcaaaata actttttgct tcataataag ctttaatgcg ttcaatagct
    35701 tcttttatac ttccttcatc aagtagtgta cctcttttaa tccctaaaat actttcaact
    35761 tgttttctat cattggaagc tatacctgtt atactaacct ttgctatagt tggtttttca
    35821 gtaactataa tttccaaaat tccattgttg ttttctactg caatattttc gaaataattt
    35881 tgtttataaa gattaagaat agcagtgttg atttttgcag gatttatttc ctcgcctatt
    35941 ttaagccccg cgatatttat agcgcttgtg ttcgataaat gatttaatcc gataaattta
    36001 atatctttaa tggttgctgc attggccata gcaactaaag cacaaatact aataagatgt
    36061 tttttcattg attttttacc taaagcttta ttaaaagctg tataatagca aaaaaaattt
    36121 aacaaaaaaa ctaaggtaga aagtatgaaa atagcaatta tagggcttgg gcttatgggt
    36181 ggatctttag ggctttgttt gaaagaaaat aagcttattt cttgtgttta tggtatggat
    36241 ttaagcaaag aaaatgaaaa agatgccctg caattaggtc ttattcatga gcttatagaa
    36301 tttaaagatt tagctttatg tgatatgatt tttgtcgcaa ctcctgttga tgctattata
    36361 gcaattttgc aaaagttagt tgatttgcct tctaatgtaa caattataga gcttggaagt
    36421 acaaaaagaa aaattataga aagtttgcct aagaatttaa tcaaacaaac tctttttgct
    36481 catcctatga caggaactga aaattcaggt ccaaaagcag cttttaaaga gctttataaa
    36541 gatgcagttt gtgttctttg tgatagtgaa atagctgatg atttacatca aaaaagagcg
    36601 gtagaaattt tttctcattt agggatgaaa attgttttta tggatagtaa agcccatgat
    36661 catcatgctg ctattatttc tcatttgcct catgttataa gtttttcttt ggcaaatttt
    36721 gtaatgaagg aagaagataa aagaaatata gttcatttag ccggaggatc ttttaaaggt
    36781 atgagcagaa ttgccaaatc atcgccacaa atgtgggaaa gtattttttt acaaaataaa
    36841 gataacttat taagttctat tgattttttt caacaagaat tagagagatg taaacaaatg
    36901 atacaattag acaaaaacga tgaattaaga gaatggatga aacaggctaa taccctaaga
    36961 gaaattttat aaatttgcta gatatttact gaaaatataa tagaatttat attaaaagca
    37021 acaaaaacat tgaaaatttt taaggaaggt tatggcaaaa agaaaaggca aaacttattt
    37081 atctgtttta attttagttt taatagcaat tttgattttt tttatttcaa gattaagtat
    37141 ttttgaaaaa aatcctcctc aaattttaat gccagatgtt gtatatactg atcttaaaaa
    37201 acctatttta gtgcatatta aagatgatga aagttctatc aaaaacgtac aaattatatt
    37261 gcataaagac gacaatacta gtgcaatggt tatagcagat gaaaagattt ctaatttaaa
    37321 agatattacc ttacaagttg ctttgccaaa atttggttac aaagaaaatg taaaatcttt
    37381 tgttttggag gtgatagcta aagattctag tttttggaat ttttttagtg gcaatgaagc
    37441 aagaaaacaa attgcggtat tagtagataa tacggctcca aaaatcaata tcataagcaa
    37501 ttcttaccaa atcgagcaag gtggtgctgg ggcagttgtt tttaaggctg atgatgctaa
    37561 tttagataag gtgtatatag aaacaaataa aggtaaaatc tttaaagcca caccttatgt
    37621 aaaagaagga tattatgcgg ctttgattgc ttgggatgca agagatgagg aatttcgtgc
    37681 atttgttatc gctacggata aagcgggcaa tatttcaaaa gaacgtataa ggtattattt
    37741 tgttaatcgt aaatatcgtg tttcaaatat caatctaacg gataaatttt tagatggaaa
    37801 gattgagaat ttagcaaatc agtacgctcc aaaagataat aatctcaatc gttatgaaaa
    37861 atttaagttt gtcaatgaaa ctttaagaaa tagcaatgaa aaacttatcc atgaaatcac
    37921 ttcaaaagta cctgaggaaa aaattgataa ttttgatttg aatttatttt tacctcttaa
    37981 aaatggtatg aaagtagcgg attttgctga tcataggtat tattcttata atgggcaatt
    38041 tgtgagtgat tcttatcata tggggcttga tctagcaagc gtagcacaag ctcctatcat
    38101 aagtaataac gcaggcaagg ttgtttttgc tgctgaaaat ggaatttatg gtttaaattt
    38161 aattgtttat catggttttg gagtatatag tctttatggg cactgttctt ctaaaaatgt
    38221 tgatttagat gaaatgatta ataaacaaag cattataggc aaaacaggaa caagtggttt
    38281 agccttaggc gatcatttgc attttggagt tttggttcaa ggggttgaaa cgcgtcctga
    38341 acaatggcaa gataaaaaat ggatagaaaa taatatttac aatgttttaa atgatggtaa
    38401 aaagataatt ttaggaaaaa attaatgaaa caattaactt tagcaaaaac tgtcaaaggc
    38461 gtaggtatag gacttcataa gggtgaaccc atagaaatta ctttagagcc tttagaagca
    38521 aatagtggta tagtattttt tagaagtgat cttaatgcaa gctataaggc aagtcctgaa
    38581 aatgtgatca atactcaaat ggcaactgtt ttaggagatg aaagagggtt tatttctaca
    38641 atagagcatt taatgagtgc gattaatgct tatggaatcg ataatatacg catagtttta
    38701 aatgcaaatg aagctcctgt tatggatgga tcaagtatta gtttttgtat gatgcttgat
    38761 gaagcagggg taaaagaact tgatgcgcct aaaaaaatta tggtaattaa aaagcctata
    38821 gaagtgagag atggtaataa atttgtgcgt ttaactccta ctaaagaacc ccgtattaat
    38881 tacacaatta aatttgacaa tgctgttata ggtgaacaaa gttacaattt tgaattcagc
    38941 aaaaaaaatt atatagaaaa catagcaagg gctagaactt ttggtttttt aaaagatgtt
    39001 caagctctta ggagtatgaa tttagcacta ggtggaagtt tagaaaatac tatagtagta
    39061 gatgaaaatc gtattttaaa tcctgagggt ttgcgtttca aagatgagtt tgtaagacat
    39121 aaaattttag atgcaattgg agatttaacc ttacttggat atcgtgtttt tggagattat
    39181 acttcatatg ctgggagtca tcatttaaat catttactta ctaaagaagt tttaaaagat
    39241 aaagatgctt atgaaattgt aagccttgaa aaaacaaccc aaaaagctta tgaaaaggta
    39301 tttgcataaa aacttctctt ttacttaata ctttatctaa gcctttaatg atcggaattt
    39361 atcaagatga taaacttata aaaacttata aaagtgaaga aaaagcaagc gaatttttac
    39421 caaaaatttt agatgaattg cttaaagaat atgattttac aagtttaatc tatgctaatg
    39481 gtccaggttc ttatatgggg attaaaattt cttatgtaag tttgagtact ttaagtatag
    39541 taaaaaatat tcctttattt gcggtgagtg cttttgaatt aaatggctat aaacccataa
    39601 gtgcaaataa aaatttttgt tttgtatata aggaaggtga aatttgttta gagcaaaata
    39661 tcccagcaga gtttttttta ccaaaaaatt tacaagagct taaactaaat aatgataatc
    39721 ttccctttta ttttttagat gtaatttagg atgaaatttg aaaattttag ttccagctac
    39781 gagtgcgaat ttagggccag gttttgattg tttaggactt agtttaaagc tttttaatga
    39841 aactcaaatc caaaaatcag gtgtttttag cattagtatt ggaggcgagg gaagtgataa
    39901 tatttttctt aaaaaaaaca atatatttgt aaatattttt tatgaaatt
//
LOCUS       DARGBD010000005        35292 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.005, whole genome shotgun sequence.
ACCESSION   DARGBD010000005 DARGBD010000000
VERSION     DARGBD010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 35292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35292
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.005"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            61..426
                     /gene="flaG"
                     /locus_tag="SFZ04_000192"
     CDS             61..426
                     /gene="flaG"
                     /locus_tag="SFZ04_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HEG8064508.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASSNIQTDRSQSQGGDDGQ
                     QQGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            429..2357
                     /gene="fliD"
                     /locus_tag="SFZ04_000193"
     CDS             429..2357
                     /gene="fliD"
                     /locus_tag="SFZ04_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEG8064509.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDGGFVNAQLNGTADLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDSNGQYQSDSEA
                     ENIFSNLGWELDKTSSIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNGL
                     EFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYNQNNVTGFRLNFSGDGSSDFSIKGDANILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLNTVTNMINAANNSNN"
     gene            2369..2755
                     /gene="fliS"
                     /locus_tag="SFZ04_000194"
     CDS             2369..2755
                     /gene="fliS"
                     /locus_tag="SFZ04_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEG8064510.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            2736..3011
                     /locus_tag="SFZ04_000195"
     CDS             2736..3011
                     /locus_tag="SFZ04_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064511.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(3009..3329)
                     /gene="rnpB"
                     /locus_tag="SFZ04_000196"
     ncRNA           complement(3009..3329)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="SFZ04_000196"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            3443..4012
                     /gene="efp"
                     /locus_tag="SFZ04_000197"
     CDS             3443..4012
                     /gene="efp"
                     /locus_tag="SFZ04_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEG8064512.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            4170..4862
                     /locus_tag="SFZ04_000198"
     CDS             4170..4862
                     /locus_tag="SFZ04_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HEG8064513.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            4849..5802
                     /locus_tag="SFZ04_000199"
     CDS             4849..5802
                     /locus_tag="SFZ04_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HEG8064514.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPHLSFFENKNATLMALIIGIIISSIVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            5812..6816
                     /locus_tag="SFZ04_000200"
     CDS             5812..6816
                     /locus_tag="SFZ04_000200"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HEG8064515.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLALDVDIL
                     "
     gene            6935..8227
                     /locus_tag="SFZ04_000201"
     CDS             6935..8227
                     /locus_tag="SFZ04_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEG8064516.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFANSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDPFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGVIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            8238..9035
                     /locus_tag="SFZ04_000202"
     CDS             8238..9035
                     /locus_tag="SFZ04_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8064517.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GALVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFESNVNFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(9032..10117)
                     /locus_tag="SFZ04_000203"
     CDS             complement(9032..10117)
                     /locus_tag="SFZ04_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEG8064518.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(10114..11346)
                     /locus_tag="SFZ04_000204"
     CDS             complement(10114..11346)
                     /locus_tag="SFZ04_000204"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEG8064519.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENTLAYFNNSNLEIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            11417..12352
                     /locus_tag="SFZ04_000205"
     CDS             11417..12352
                     /locus_tag="SFZ04_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEG8064520.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDKNK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            12533..13861
                     /locus_tag="SFZ04_000206"
     CDS             12533..13861
                     /locus_tag="SFZ04_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG8064521.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMAKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDYIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAMGDAMQPALSYNYAKKDFSRIKAIVKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQDFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSCFMGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
     gene            complement(13909..14838)
                     /locus_tag="SFZ04_000207"
     CDS             complement(13909..14838)
                     /locus_tag="SFZ04_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 domain-containing protein"
                     /protein_id="HEG8064522.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSHNADNSDSSFIPFIGAELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYVIGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEIELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            14992..16368
                     /locus_tag="SFZ04_000208"
     CDS             14992..16368
                     /locus_tag="SFZ04_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEG8064523.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKVLRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            16431..17033
                     /locus_tag="SFZ04_000209"
     CDS             16431..17033
                     /locus_tag="SFZ04_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064524.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDMINTEEYKLKRELEIEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFECLSAFLETQSEKNDLAVVKM
                     ISESMERKTQRFYLQTKFQTFPQYIFPSVWSSPMWNKQWE"
     gene            17024..17230
                     /locus_tag="SFZ04_000210"
     CDS             17024..17230
                     /locus_tag="SFZ04_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064525.1"
                     /translation="MGIMLGILSLIAGFVAIVLMCSLYFIVFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            17307..18425
                     /locus_tag="SFZ04_000211"
     CDS             17307..18425
                     /locus_tag="SFZ04_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosome-binding GTPase"
                     /protein_id="HEG8064526.1"
                     /translation="MANNEFNFNNGSFFNEIMTMFEKIKKEEQENNKLNVLILGKTGA
                     GKSTLINTVFGEKVAKTGSGSPITANLNKYEKDGLCIYDSKGLEIKDDKGIDNLKQFI
                     EDQKAKEPSDQIHLVWFCICEANRRIEPQEKELIKFLKSEKFCTILVITKAQQDKDEN
                     GCSFKDIVKKELELDDEKIERVRAIAIEDDEGNVKKLLGIKELVNKTYCFLNEGQKNA
                     FARKQQYDKDLKREACKEKAQDKIKYYAGLSSTVALSPIPFSDFPLIATNQCAMIYHI
                     SMIYELNLSSKDDALKILTALLATGVTGFAVKTLATGLMKFIPGVNFIGGAINATVAY
                     NATKKIGEFYIDYLDEHFEDIQNGKKLDFEFKNLSIEK"
     gene            18436..18606
                     /locus_tag="SFZ04_000212"
     CDS             18436..18606
                     /locus_tag="SFZ04_000212"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064527.1"
                     /translation="MIKPIPKFQKCIKCGKSFLAKPKSDALNTLDFICSDCKGEKSGF
                     LSSLFEIFKPKH"
     gene            18620..18925
                     /locus_tag="SFZ04_000213"
     CDS             18620..18925
                     /locus_tag="SFZ04_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064528.1"
                     /translation="MFSKIFSSLSLANAFKGFLFKRISSPMQSARIISMVLDIKNAFN
                     DSKDQASSICKTLDLIVNFKKEHPQDFNELFEILKDLIQEYEQNPNEIKQNLKEILK"
     gene            18934..20001
                     /locus_tag="SFZ04_000214"
     CDS             18934..20001
                     /locus_tag="SFZ04_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8064529.1"
                     /translation="MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNSLEEIYQSTNEENFLQLFLSDYANLFVAKVIKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSLLRDKFLANFITPNDHTYAIYGNNYTYPLPVRLKEECSYFLGD
                     EKHYLSVYKSKEYLAMQENFIRFVFGKRIFYLLHPDSISNIIHAELELLQSENDLLND
                     FTSIIVKYSKTLEYEIYAFAKKVLLKACMKDPSLYDLTYNVQSKSFILKDFFTQKPNL
                     GSIKFLLRHENIQCHLGKSLTQFINYPFSKSLTLIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKSILTHKEIS"
     gene            19998..20870
                     /locus_tag="SFZ04_000215"
     CDS             19998..20870
                     /locus_tag="SFZ04_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEG8064530.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKKKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLRTKNENFIPNEKLQEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDKDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIR
                     LEDILKSYLNNLSK"
     gene            complement(20892..20967)
                     /locus_tag="SFZ04_000216"
     tRNA            complement(20892..20967)
                     /locus_tag="SFZ04_000216"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(20932..20934),aa:Met,seq:cat)
     gene            complement(21001..21075)
                     /locus_tag="SFZ04_000217"
     tRNA            complement(21001..21075)
                     /locus_tag="SFZ04_000217"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21041..21043),aa:Gln,seq:ttg)
     gene            21168..22187
                     /locus_tag="SFZ04_000218"
     CDS             21168..22187
                     /locus_tag="SFZ04_000218"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HEG8064531.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            22199..22642
                     /locus_tag="SFZ04_000219"
     CDS             22199..22642
                     /locus_tag="SFZ04_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEG8064532.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            22660..24360
                     /locus_tag="SFZ04_000220"
     CDS             22660..24360
                     /locus_tag="SFZ04_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEG8064533.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISSKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            24357..24821
                     /gene="ilvN"
                     /locus_tag="SFZ04_000221"
     CDS             24357..24821
                     /gene="ilvN"
                     /locus_tag="SFZ04_000221"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEG8064534.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            24818..25783
                     /gene="lpxD"
                     /locus_tag="SFZ04_000222"
     CDS             24818..25783
                     /gene="lpxD"
                     /locus_tag="SFZ04_000222"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEG8064535.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(25772..26800)
                     /gene="queA"
                     /locus_tag="SFZ04_000223"
     CDS             complement(25772..26800)
                     /gene="queA"
                     /locus_tag="SFZ04_000223"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEG8064536.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHDPLFLAQIK
                     GRVKKDEILYFKDDLKVRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYARTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(26793..27530)
                     /gene="tatC"
                     /locus_tag="SFZ04_000224"
     CDS             complement(26793..27530)
                     /gene="tatC"
                     /locus_tag="SFZ04_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEG8064537.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            complement(27531..27938)
                     /gene="tatB"
                     /locus_tag="SFZ04_000225"
     CDS             complement(27531..27938)
                     /gene="tatB"
                     /locus_tag="SFZ04_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HEG8064538.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKTEK"
     gene            complement(27997..29064)
                     /locus_tag="SFZ04_000226"
     CDS             complement(27997..29064)
                     /locus_tag="SFZ04_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG8064539.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFQALKEDIVFQLK
                     QFNIQSNQIKTLFIGGGTPSCVDAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGAQSFHPKKLHFLGRIHNQEMIIKALENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKALITHLSAYNLTIESNTAFTKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYK
                     NKRYFNPNFLISDELALYLSS"
     gene            29165..29635
                     /locus_tag="SFZ04_000227"
     CDS             29165..29635
                     /locus_tag="SFZ04_000227"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEG8064540.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEEKGYI"
     gene            29637..30839
                     /locus_tag="SFZ04_000228"
     CDS             29637..30839
                     /locus_tag="SFZ04_000228"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEG8064541.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSVQQGDQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVSCALLSIALNEKGYPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNVEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            30840..31376
                     /locus_tag="SFZ04_000229"
     CDS             30840..31376
                     /locus_tag="SFZ04_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HEG8064542.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKAARPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            31382..31981
                     /locus_tag="SFZ04_000230"
     CDS             31382..31981
                     /locus_tag="SFZ04_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEG8064543.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFMPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYEGYELAKLNSKSGVLLATLLLNYYTKK"
     gene            31983..33125
                     /gene="folP"
                     /locus_tag="SFZ04_000231"
     CDS             31983..33125
                     /gene="folP"
                     /locus_tag="SFZ04_000231"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEG8064544.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRIGAELITHKEVITAKITHSNALLMASKEQIQKLIAKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPAYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYEAKYCLMHMQNNPNNMQDNPSYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            33126..35069
                     /gene="ligA"
                     /locus_tag="SFZ04_000232"
     CDS             33126..35069
                     /gene="ligA"
                     /locus_tag="SFZ04_000232"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEG8064545.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFE
                     EQNKDEISKDSPTQKIAPIIQSEFKKIAHLRRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWHKQSFEAYANLEGFGEQMALSLCEFTRVNHTRIDEFYKLLNLKIEK
                     LEIKSDSMIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCINESAFNELVKE"
     gene            35050..>35292
                     /locus_tag="SFZ04_000233"
     CDS             35050..>35292
                     /locus_tag="SFZ04_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064546.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLYIFSF"
BASE COUNT        12406 a         4595 c         6306 g        11985 t
ORIGIN      
        1 tataaatttg tcgatataag cttttaacta gcaataggaa attttaaaaa ggattttaaa
       61 atggaaatat cgaaggcaaa tgggcaaatg gatacagctt tggcaaacat tagccaaaga
      121 acaagtgaga cacaggctag ttcaaacatt caaaccgata gaagtcaaag tcaaggaggc
      181 gatgatggac aacaacaagg tgtgagtgaa aagttagctg atattacaaa aaagttaaat
      241 gagcaaatgg attctctaga taccaatgtt cgtttcggtt atagcgataa aatcggttct
      301 atgtatatta gcgtgactga aaaaagtact ggaagggaaa ttcgtcaaat tcctagcgaa
      361 gaagctatga gattagctga gtattttagg gatgtgatag gaatgatatt tgataaggag
      421 agttaaaaat ggcatttggt agtctatcta gtttaggatt tggttctggg gttttaactc
      481 aagatactat agataaatta aaagaagcag agcaaaaagc tcgcattgat ccttatacta
      541 aaaaaattga agaaaataca accaaacaaa aagatttaac agaaatcaaa actaaattac
      601 taagttttca gacggctgtt tcatcattgg ccgatgctac ggtttttgcg aaaagaaaag
      661 ttgtaggaag tattagtgat aatcctccag caagtcttac agttaattcg ggtgttgctt
      721 tacaaagcat gaatatcaat gttactcaac ttgcacaaaa agatgtgtat caaagcaaag
      781 gattagcaaa tgacggtggt tttgttaatg cacaattaaa tggaactgcc gatcttactt
      841 ttttttcaaa tggcaaagaa tatactgtta cagtagataa aaacacaacc tatagagatt
      901 tagctgataa aattaatgaa gctagtggag gagagattgt tgctaagatt gtaaacacag
      961 gagagaaagg cactccttac cgcttaactt taaccagtaa agaaacaggc gaagacagtg
     1021 cgataagttt ctatgctgga aaaaaagatt cgaatggtca gtatcaaagt gattcagagg
     1081 cagaaaacat attttcaaat cttggatggg aattagataa aacgagttct attgatccag
     1141 ctaaggataa aaaaggttat ggcatcaagg atgcttcttt gcatatccaa actgcgcaaa
     1201 atgcagaatt tacacttgat ggtattaaga tgtttagatc aagtaacact gttaccgatc
     1261 ttggtgtagg aatgacttta actttaaata aaacaggtga aattaatttt gatgtacagc
     1321 aagattttga aggtgtgaca aaagccatgc aagatttggt ggatgcttat aatgatttag
     1381 taaccaatct taatgctgca actgactata atagtgaaac tggaacaaaa ggaactttac
     1441 aaggcatcag tgaagtaaat tcaatacgct caagcattct tgctgatttg tttgattctc
     1501 aagttgttga tggaactact gaagatgcaa atggtaataa agtgaacact aaggttatgc
     1561 tttctatgca ggattttggc ttaagtttaa atgatgcagg cactttgagt tttgattctt
     1621 ctaaatttga acaaaaagtt aaagaagatc cagactctac tgaaagtttt ttttcaaata
     1681 ttactaaata cgaagacatt aatcacacag gagaggtaat taagacagga agtttaagta
     1741 aatatcttaa ttccaatgga ggtaatacta atggtttaga atttaaacca ggagatttta
     1801 ctatagtttt taataatcaa acatatgatt tatctaaaaa ttctgatggt actaatttta
     1861 aattaacagg gaaaacagag gaagaattgc ttcaaaattt agctaatcat ataaacagta
     1921 aaggtattga aggcttaaaa gttaaggttg aatcctataa tcaaaacaat gttacagggt
     1981 ttaggttgaa ttttagtgga gatggtagct cggatttttc aatcaaagga gatgctaaca
     2041 ttctcaagga attaggtttg tctgacgtaa atataacctc taagcctata gaaggtaaag
     2101 gtattttttc aaaattaaaa gccacgttgc aagagatgac tggaaaagac ggttcaatta
     2161 caaaatatga tgagagtttg acaaatgata ttaaatcatt aaatacctct aaagactcga
     2221 ctcaggctat gattgataca agatatgata caatggcgaa tcaatggttg caatatgaga
     2281 gtattttaaa taaactcaat caacagctaa atactgtgac taatatgatt aatgcggcaa
     2341 acaattctaa taattaagga taaaaaagat gcaaaataat ttagcctata atgcttattc
     2401 tcaaaatcaa gtggggatag agtccccgca aaaacttatt gaaatgcttt atgagggaat
     2461 tttgcgtttt tgtgcaagag ctaaagtagc cataagaaat gaagatatag aacaaagagt
     2521 gtattttgta aaaagaacca cggctatttt tatagagctt attaatactt taaactatga
     2581 aaaaggcgga gaagtggcac attatttaag cgggctttat acaagagaaa ttcaactttt
     2641 atctttggca aatttagaaa ataacgaaga tagaatcaat gaagttataa atgtaaccaa
     2701 aggtttgcta gaagcttgga gagaagtgca taacaatgaa acagtggctc agtgatttta
     2761 aacttgcatt aatccaagaa gatgtcaata aacttgaaaa tttacttgat gaacttgata
     2821 tgaaagcttt tattaaaaat ttagccaaag aatcgccttc agaagatttt ttaaaagaaa
     2881 atgcaaatga tgtattttat caagttcaag ctcttttgca agaagctgtt atactgattg
     2941 aacaaaagaa aaaaacaaaa gctgttgaaa ttcaaaaatt tcaaaaagcg ttgacatatt
     3001 ttaaatctta aaaaagcata gcgataagcc gagttctgtc ttgaatgctc atttatctag
     3061 ttttgttttt gcaaacaaaa tcaagcgaag ggttaaaaca aagacgctaa ccatcccttc
     3121 ttgctgcaca ttgggtttac atagccgaaa ttgttaccaa aatcgctggt gggcttttac
     3181 cccgccgttt caccttttcc acttacgtgg tagttttctt tctgttgcac tatcccttag
     3241 gttaccctag ccatctgtta gatggaatgt ttgtctttag cagctcggac tttcctctcc
     3301 taaaaagaag cgagcattta ctatgcttta aatttggatt ttaacgtaat tttacttatt
     3361 ttttcatcaa ataaaataat tttattgtga tatcaatcaa aatttgataa aattgttttt
     3421 tattttttaa caaaggaaat ttatggcatc ttattcaatg ggtgatttaa aaaagggact
     3481 taaaatagaa atcgatggaa ttccttttaa aatagttgag tatcagcatg taaaaccagg
     3541 caaaggtcct gcttttgtgc gtattaaaat caaatctttt attgatggta aagtacttga
     3601 aaaaactttc catgcaggtg ataaatgtga agctccaaat ttagaagata aaactatgca
     3661 gtatctttat gatgatggtg aaaattgcca atttatggat acgcaaacat atgaacaagt
     3721 agctattagt gatgatgatg taggtgaggc gaaaaaatgg atgcttgatg gtatgatggt
     3781 agatgtgctt ttccataatg gtaaagctat cggcgtagaa gttccacaag ttgttgaact
     3841 caaaatcatc gaaacagctc caaattttaa gggtgatact caaggatcaa ataaaaaacc
     3901 ggctacattg gaaacaggcg cagtagtgca aattcctttt catgtgttag aaggtgaagt
     3961 tatacgcgtt gatactgtgc gtggtgagta tatagaaaga gcgaacaaat aatacaaaaa
     4021 aagcttttgg actattccaa ggctttttta aatttatata aaatttattt tgttacttaa
     4081 tttctcattc cattcttaaa aatatttttt taaacttttc ttcaatttaa aatttctata
     4141 atatttctaa ttcatattgg agatggttga tggaatggtt acttcttgct tctatacctt
     4201 tgattgtttt aggttttgct ttaaagatta accccttttt agtggtaact tcagttggaa
     4261 tttatgctgg acttgtttca ggttttgatt ttgttaaggt tgttagtgat ataggaaaat
     4321 cttttgtaga taatcgctat gttgctataa tttggcttat tttaccttta cttgctgttt
     4381 tggaacgcaa aggcttaaga gagcaggcta aaaatttaat atccaaaata aaagttgcca
     4441 gtacaggacg aattttaatg tgttattttg tttttagaca agttactgca gctttagggc
     4501 ttttatcttt aggcggacat gcacagatga taagaccttt aatagcccct atggcagaag
     4561 ctgcagctaa gcttaaattt aaaaacttaa cacataaaga tagtcaaaaa atcaaagctt
     4621 tttctgcggg aacggataat gttgctgtat tttttggaga ggatattttt atagccgtgc
     4681 attctatttt atttattaaa gctttttatg agagcaatgg tattattgtt gagccattgc
     4741 atttatcagt ttgggctata ccaactggaa ttttggcttt aattatccat tgctctagac
     4801 tttatttatt tgataaaaga ttggaaaaaa cttataaagg gttgagtgat gataagtctt
     4861 gatttacttt attatattgt aggaatttta tttttagttt ttggaatttt aagtttttct
     4921 aatcaagcta aagatataaa atcaagaata agcggcgggg tattttggat aagttatagt
     4981 tttacttttt tactagcagg agttttgcct cattttgtga tgggttgtat agtgatttta
     5041 ctagcactta tagcagggtt taatttatta aaaccagcaa agatcgaagt tagcaaagaa
     5101 gaaaaagaat acgagataaa acatgcaaat atttataaaa ataaactttt tattcctgct
     5161 ttaatggttc ctttgattac acttattggg acttttttat ttccccattt gagttttttt
     5221 gaaaataaaa atgctacatt gatggctttg attataggta taattatttc ttcaatagtt
     5281 gcttgtttta tgtttaaggc ttctcctaaa agagctgtta aagatgcagc acatactatg
     5341 gatcacatta gttgggcggc gcttttaccg caaattttgg ctacacttgg ggtagttttt
     5401 gtttctacag gaatgggcga tcaagtatct aaacttttat ctagttatat tagtttggat
     5461 aatgctttta ttgcagtagc tgtgtattgt atcgctatgg cgctttttac tatagtaatg
     5521 ggcaatgctt ttgcagcttt tcctgtgatt actgctgcta ttgctttgcc gattttaatc
     5581 atacaaatgc atgcaaatcc tgctattata ggtgcgattg gaatgcttag tggattttgc
     5641 ggaactttaa tgacgcctat ggctgcaaat tttaatatag ttcctgcggc acttttaaat
     5701 ttggatgata aaaatggcgt aattaaagcc cagtttatgt caggacttgt tttgcttgta
     5761 gctaatatct ttttaatgta ttttttagct tttagatttt aaggagaaac aatggaaaaa
     5821 tttataaaac aatttagctt tattgcacta gaaaatattt ttagagaatt gccaaataaa
     5881 atcacacatt cttttaatga tatcaatgat attaaaccgc caaaacttat gtatcctata
     5941 ttttatggtt cttatgattg gcattctagc gtgcattctc actggctttt ggtgaaaatt
     6001 ttaaaagatt tttctcattt tgctccaaag gatgaaatca tcaaagctct agattctcaa
     6061 tttagcaaag aaaaagcaga aggagagctt aaatatcttc aaaaccctgc acacaaaggt
     6121 tttgaaagac cttatggatg gggatggttt ttaaaactga ctttggagat aaatttactt
     6181 gctaaagaaa atgacaaagc tgaaatttgg gctaaaaatt tagaaggcat agctgatttc
     6241 tttgttaaag aatttaagga gtttttacct aagatggatt atcctatacg agttggaacc
     6301 cattttaata gctcttttgc tttgtatttt gctttagaat atgcaagatt taaaaaagat
     6361 caagaattgg agtattgcat catccaaagt gctaaaaagt ggtttttaaa tgataaaaat
     6421 atgcaagctt tagagccttg tggagatgag tttttatctc ctgttttgat ggaagcggtg
     6481 cttttaagtg ctgttttaca taaaaatgat tttgtaaaat tttttaaagc atatttgcca
     6541 aatttagaag caaaagagcc tgcaacttta tttacccctg tgagtgtgag tgataggagc
     6601 gatggtaaaa tagcacattt agatgggtta aatttaagcc gtgcttggtg ttttaaaata
     6661 ctttcaaatt tttgcgatga aaatttaaaa attcttttaa gaaacaatgc tacagagcat
     6721 tttgataaag ctatagctca tatagaagat gattatcttg ggtcgcattg gctaggaagc
     6781 tttgctttgc ttgctctgga tgtggatatt ttataaaaaa tttcataaga tgagtaaatt
     6841 tgttgctaaa tagatatttt ttaaatttag attttgtttt tatgctttga aaaatatatt
     6901 ttttgatatt ataagcccta taatattata aaggatgata atggtttttt taatcatctc
     6961 tagtattata gtggctatta ttttgggcta tattactaga cataatgttg gaatttttgc
     7021 tatgattttt gcttatatta taggagcttt ttttatggat ttagctccta aaaaaatcat
     7081 agctttttgg cctatttcta tattttttgt tatttttgct gtctcattgt tttataattt
     7141 tgcaaccgta aatggaactc ttgaaaaatt agctggacat ttgatgtatc gttttgctaa
     7201 tcatccttat ttgcttcctt ttgttatttt tgtggttagt gctattatag ctgctttagg
     7261 agcaggtttt tatacagttt tagcttttat ggcaccactt acttttttac tttgcgataa
     7321 aatcggttta agcaaaattg ctggagctat ggctataaat tatggtgctt tgggaggagc
     7381 aaattttatg acttctcaaa gcgggattat ttttcgagga ttgatggaaa attcaggcat
     7441 tgaagcaaat gaagcttttg caaattctag tattattttt gcttttacta taatcttgcc
     7501 tattgtggta ttatcttttt ttgtgtttaa tgcttttaaa aataatataa aaattagtgt
     7561 tatttcaaaa cctgatccat ttgattataa acaaaaaact actttaattc tcatgtttat
     7621 gatgattgtt gttgttttaa tctttcctgt gctaaatatt atttttccac ataatgagac
     7681 aattagttat tttaataaaa aaatagatat agccatgata gccatgattt ttgttgccat
     7741 tgctttattt ttaaaattag ccgatgagaa acaagttgtt gctttaattc cttggggaac
     7801 cttgataatg atttgtggag tagggatgtt aattagcata gcagttgaag caggggttat
     7861 aaaattattt tcagatcttg tagaaaatga gatcaatgtg atttttattc cgttaataat
     7921 gtgtgctatt gcagctttta tgtcgctttt ttcaagtact ttgggtgtgg ttactccagc
     7981 gctttttcct atagttccaa gcattgctgc aagcagtgga ttaagcgagg cattgctttt
     8041 ttcttgtatt gttgtagggg ctcaagcttc tgctatttct cctttttctt ctggaggaag
     8101 tctaatttta ggatcttgcc ctgataaata taaggaaaaa ttatttaaag atttgcttat
     8161 taaggctgtg cctataggat ttatagcggc gattttagct actattataa tgagttttat
     8221 tttataagga taatttaatg aagattgata ctcacgcaca tatatttttg aaaaagttaa
     8281 atacggttgc aaatgcaaga tataagcctg attatgacgc tagttttaaa gattataaag
     8341 caaatttaga tcattatgat tttaataaag gggctttagt tcagccaagt tttttaggta
     8401 ttgataatga atttttgctt cagagtatag aaaaagatga aaatataaaa gctatagttg
     8461 tggttgatga aaatattaaa tttgatgagc ttaaaaaact aaaagaaaga aaagcttgtg
     8521 gagttagatt aaatttaatt ggcaaagaat taccaaattt taaaagtatg gtttggactc
     8581 aattttttga aaatttaagt aagcttaaaa tgcaaataga aattcaaaga gatttagata
     8641 ataatcttgt tgatattgtt gaaaatttaa ttccttatgg ttgtaatatt gttatcgatc
     8701 atttagcaag agctaatgca aacttaacaa atttagagga tttaatttgc ttaaaaaact
     8761 ctagaatatt ttttaaaatt agcggttttt atagagcaaa aatagattat gctaataatg
     8821 aacaagctgt aaaatttgca aagaaaatat atgaaatttt aaaagaacat tttccactta
     8881 gcaattttgt ttttggaagc gattggccac atacaaattt tgaatcaaat gttaattttt
     8941 catcggctct agtagctttt aatgaagttg tcgtatctaa aaaagaacaa gagcaaattt
     9001 taggggataa tgcttgtgct ttatttggct tttaagcttt ttgttttatc ctaaagatgt
     9061 attttgcaat gcgttcaaaa tgcactctta gataaggttt gtaaatcaca aaaccaccta
     9121 aaagccctaa aatgcttcct attacaacat caattaaacg agcgagtatt aatttatctg
     9181 cattttcact cataaaatta gctgcttccg aaagataagt agcataagga gtaaagaaaa
     9241 tcatagctaa agcatagttt cgattgacta aaaattgtcc tataaaaaac aaagacatca
     9301 taagtaaaat aagctctata tcgtgaaatt gtttagataa aagccaccat gcaaaacata
     9361 ctcctaaggc cgttcctatg atgcgttgaa tttgtttaat ccatatagaa tttaaagtta
     9421 caccttgcat aatagctgta caagaaatgg ctatccaata acttctttca agttctaaaa
     9481 aagttcctat aaatatagaa aaagccacaa aagaacccat gatcaaagaa tccacaaaaa
     9541 ctgcatcaaa acctatatat tctctaggtg gaatttcgct aggtaaagca tttttaaatc
     9601 cataaatcac aacgatagaa tataacaaag ccattaaatt agctaccatt gctccaagaa
     9661 aaacaagacc tactaaaaag ataaaatcct tagcttcaaa aggagaatag gctcctaaaa
     9721 cacaagaaaa tacaaagaaa aaatatccag gtgcaccaat gttatagtat ctaattaaaa
     9781 tagaacttcc catggccata attcctatag ggatgaaggc aaaaattgca ggcaaaaaat
     9841 gagttaaaat tcctaagaaa aaactagaaa ctatgccaaa agaacagcac atcacaacag
     9901 ccattctatg atataaagga gtgtttggaa catataaaaa agacaaagct cctatcatgg
     9961 caatgagtcc atagtttaat tttccaaaaa atacactaag ccctaaaact atacctacgc
    10021 ctaaagccgc aaaaaaaggc atttgccaaa cttgttcgct tgaatttaat ttagcaattt
    10081 ctttaaagtg ttgctttagt atttctattt tattcactct cgaatttgtc cttccccatt
    10141 gattatatat ttataagtgc aaatatcttc aatccccata ggacctcttg catgcaattt
    10201 gctggttgaa attccaactt ctccaccaaa gccaaattct cctccatcgc taaaacgcgt
    10261 tgaagcatta gcataaatac aagatgagtt tataaggcgt tgaaatttag cgatatttga
    10321 agcatcattt gagataatgg tttcagaatg caaggagctg tgtttattga tatgctctat
    10381 agcttcatcg caatctttta ctaattttac acttaaagca aaatcaagcc attctgtatc
    10441 aaaggtattt tcatttgctt taaaaatttc taaatttgag ttgttaaaat aagccaaagt
    10501 attttcatgg gcgtgaattt ttaccttaaa tttttcaaat tcaggtatta aaagacttat
    10561 aaaattttta gcaatttttt catggattaa aagcgtttct aaagcgttac aaacacttac
    10621 tctttgacac tttgcattaa ggattatttt taaagccata tctaagttag cactttgatc
    10681 tacaaaagca tgacacaagc ctttattttg cttaatgaga ggaattttgg tattgtttgc
    10741 aatttcttgt atcatatttg aacttccgcg aggtatgatc acatcgatta aatcatcaaa
    10801 ggctagaatt tgcaagattt catctctttg ggtaaacata gcaaaacaat cttgcaaatc
    10861 aaattcctta agtactttat taacaagagt aaatatagcc tcatttgtaa attttgcttc
    10921 acttccgcct ttaaatacac aagcattgga actttttatc attaaagctg cgatttcagc
    10981 gctaagacta ggccttgctt cgtaaataac acaaatgagt cctaaaggaa tgcttatttt
    11041 ttgtatgttt aaacccgcat aatttttcca gcctttagaa attttgccta taggatcttc
    11101 gatgtaagcg attttttcta ggccttcgca aagagctaaa atacgttttt catctaacaa
    11161 aagcctatct ttcattgctc cgctttttgt gaaatttgcc atatcttttt tatttgcttc
    11221 taggataatt ttgaaatttt ctcttaaaat ttgagctaat tttagaataa ttttttcttt
    11281 atctttgggc gttaagttaa gtagtttttg agaatttttc ttaatatttt caagcaaatt
    11341 tcgcattttt aatcctttat ttacaaaaaa cttgataaat tatacaaaaa aatttagaat
    11401 tgaaaggtaa atataaatga aaaaaataga tttaattgta gtaggtgcag gtccaacagg
    11461 gataggctgt gcagttgaag ccaagcttaa aaacaaagaa gttttgatac tagaaaaatc
    11521 aaataacatt tgtcaaactt taatgcaatt ttataaggat ggcaaaagag tagataaagc
    11581 ttataaggga tgcgaaggaa ccaatcacgg acatgttcct tttgaagatg gcaccaaaga
    11641 aagcactata gaaacttttc aaaacgcttt aaaagagcac aatatagaag ttgaatttgg
    11701 ttctgaagtt gagagcgtta aaaatgaaaa tggagttttt ttagtaagta cagctaaagg
    11761 tgtttatgag tgtaaaaaca ttattgttgc tataggtaga atgggtaaac ctaataaacc
    11821 tgattacaaa cttcctatga ctttaacaaa aatcattaat tttaatgcca attcagtttt
    11881 gggaaatgaa aaaattcttg ttgtaggtgg cggaaattca gcagcagaat acgctgtgga
    11941 tttggcaaat tcaaatcaag ttagcctttg ttatcgtaaa aaagaattta caagattaaa
    12001 tgatataaat cttaaagata ttcacgaagc tggaaattcg ggtaaggtag agttaaaatt
    12061 aggaattgac attaatgaag tagaagatga taatggcaaa gctaaagtaa attttaccga
    12121 tggtacaagt gatatttatg atagaatcat ttatgctatt ggtggttcta ctccacttga
    12181 ttttttacaa aaatgtggga ttaatgttga tgataaaggc gtgcctttaa tggataaaaa
    12241 caaacaaagc aatgttaaag gcatctttgt agcaggagat attgctacta aaaatggagc
    12301 aagtatagtt acagggttaa atgacgctgt gaaaattctt tctgtgcttt aaaatttagc
    12361 ctttgggcta aatttttatt ttagtttaat ctagaaaatt catatgcaaa ataaaataaa
    12421 tattaataaa cttattgcga aattacttta tttaaattct tacatattag gacttttggc
    12481 attttattag cggtttaaaa tatttttaat tttaaatatt ttaaggatta ttatgtcaag
    12541 tatttttagc accttaagcc cttttaggct ttttgtaaaa tgtgccgtgc caaatgttat
    12601 aagcatggct tttatttctt tttattatat agttgatgga atttttgttg gaaaatatct
    12661 aggaagtgat gctttagcgg cactagcctt gattattccc tttatcatga tgtcttttgc
    12721 tttggctgat atgatagcca taggatcagc agtgcaaatt tctatgcatt taggtttagg
    12781 caagaagaat ttagctagaa agatatttag ctcaagtatg ttgattattt ttataatctc
    12841 ttgttttatt ggaattttag agtatttttt aggacctgtt ttgattgatt gtttaaatgt
    12901 tagcgatgag attaaaacga tggctaaaga atgtatgttt gtttttgctt tgtttgcacc
    12961 ctttactatg ctttcttttg ctttggataa ttatttaaga atttgcggaa aaactgctta
    13021 tagtatggta atgaatgtga ttatagcatt aagcaatata gtgcttgatt atatttttat
    13081 agtcgagttg ggttggggct tattttcagc tgctcttgca acttgtttgg ggcttgtttt
    13141 aggtggtatt tttggaattt ttcctttctt gtttcaaaat ttagagctta aaatttcaag
    13201 cctatacatg aatttaaaaa tttttaaaaa tattctttat aacggaagca gtgagttttt
    13261 tggcaatatt tcaggatctt tatatagtat ttttgcaaat tttgttttat taaaaatttc
    13321 tgatactcaa gccgtggcag ccttttctat agttttatat attgatagtt ttattataat
    13381 gcttattatt gctatgggtg atgcaatgca gcctgcgctt agttacaact atgctaaaaa
    13441 agatttttca agaatcaaag ctattgtaaa agtggtattt tttgcagggg gatttttatc
    13501 tttattctct atagtgctta tattgatatt tggagaaaat ttaatcacgc tttttacaaa
    13561 agaaaacaat caagatttta aaacttttgc ttatacagct ttgatgcttt ttgcttttaa
    13621 ttattttttt gcatggttta atgttctaag tggttctttt ttgacagctt ttaataaggc
    13681 aagcttttct ttggttttaa gtttggcgca aaatttattt atacctttgt tttttctttt
    13741 gtttttatct tgttttatgg gtttaaatgg agtatggcta agtccatttt ttgctgaatt
    13801 ttgtgttttg attttagctt ggatttttct taaaagaatt tttaaagatc tatctttata
    13861 ggagatagat cttttttaaa ttttatcaaa ggagcttttt tataattttt agaatttata
    13921 tcctatacca gttaggacaa tttgataggt ttcatcataa aatcctatat cgctatttct
    13981 tttttctatg ccataatttg caaaaccata aagtccgtta taacccaaaa attgattttt
    14041 aacaactttt aaattaagct taactatatt accatcttgt tttttgtgaa agataggatc
    14101 agttcctact gcttcatatt tgctaagatt taaatttgga gtgaagatgt aatcattagc
    14161 aaaagccaaa tttgttccta tactaaaacc atatcttgaa tagctttgag cttttccgtc
    14221 tgcatcattg taatcataat ttaaccctag gtttaataag ctataattat agtttaattc
    14281 aatttcgtga taatatccct ccctttttaa agagctttgt gcgatagtgt ctttatcata
    14341 tttgtttttg ctaaataaat atgaagtggt aaatttccca aaatcacttt cataaagttg
    14401 agagatttta aaaccatatc tatcaacatc agtttcttct ctatttccta ttacataagg
    14461 atttgcataa gctttttctc ttaaagagga aattacagaa aaagaagtgc taaaacgctc
    14521 taaataagct ctttcgtagc ctaaagctat accgctgata tctcttccat tgtagttttt
    14581 aataaaaatt ctatcattat ctataagatt accatagtaa agttctgcac cgataaaagg
    14641 aatgaaagag gagtctgaat tatcagcatt gtgactgctt agataatcgc tgtttgccaa
    14701 ggttgaaata ttacttttaa tatcccttgc acccacacct atgcttaaat ttccactaaa
    14761 accttcttga aattctacag ccgtagctga ttgggttaaa atggaggcta aaacacagga
    14821 aaataaatat tttttcaaat gttctccttg aaatgtttgt tgtttgtaat taaattacat
    14881 ttataattgt aactaatatt acattaaata tttataaaaa aattaagttt tataatttaa
    14941 gtttttttag atagaatttt tagaattaat ttatatttat aaggaaattt agtgcagcaa
    15001 gagtattatg acttggattt agaacgagct attttaagca gttgtatcat gagtgaagaa
    15061 gcttatgcta gtatagcagg tgatattagc ccaaaagatt ttagtcttaa agctcaccaa
    15121 gatattttta aagcggttat agcttgtagt aataacaaag agcccatttc tgtaagtttt
    15181 ttaagaaaac ataaaaaaat agatgagcaa attttagcag aaattcttgc cactccttct
    15241 atgatagatt tgcctgctta tgtaaatgaa cttcacgaaa agtccgtaaa aagacaactc
    15301 ttgagttttg cacatctttt gccaactcgt atcaatgaag atcgtgctgt aagtgaaatc
    15361 gcagatgaaa ttggtaaaga aatttttagc attacaaatc gtgtgaattc tagagatatt
    15421 aaagatgttg atatggtaat atcagaactt tttgaagaat ttaaaaagca aaaaacttta
    15481 gaaaataaag gtattatagg gcttgataca ggttttgaag gtctaaataa aatgacaaaa
    15541 ggctttaaag ggggtgaact tataataatc gccgcgcgtc caggtatggg aaagacaact
    15601 ctttgtttaa atttcattga taaggtttta agacaaaaaa aaggcgtggc tttattttct
    15661 cttgaaatgc ctgcaactca aatcatgcaa agaatgctat cttctaaaac ttctattcct
    15721 ttgcaaaaaa ttttaactgc agatttaaac gatgatgaat gggagcgttt aggagatgct
    15781 tgcaatgatt atagtcaaaa gaaattatat atttacgata gtggttatgc aactattgct
    15841 gatgtaaggg ctattttaag gcgtttaaaa tctcaagatg aaagtatagg actttgtgtg
    15901 attgactata tagggcttat gatgagtaat tcaaatttta atgatagaca tttgcaagtt
    15961 agtgaaattt caagaggact taagcttttg gctagggagc ttgatatgcc tattatcgca
    16021 ctttcacaac ttaatcgtgg cttagagcaa agggcaaata agcgtccttt gatgagtgat
    16081 ttgcgagaaa gtggagctat agagcaagat gcggatgcta ttttgtttgt atatcgcgat
    16141 gaggtttata gagaacaaga agaaaaagaa agagagaata aagctaaagc tgaaggcaaa
    16201 gcttatcaaa ggctttttat accaaatcct atgcaagaaa atgctgaaat tattgttgga
    16261 aaaaatagaa atgggcctgt tggaactata gaagttgtat ttttaaaaga aaaatcttgt
    16321 tttgtagata aacctatagg ctatgaaact actgaattta caggctagct ttaataaaat
    16381 aagtttttaa tattttaaag ttatttttta cgacacaacc tgtcgcaagg gtgttttata
    16441 ctttctttgt tattttaaaa caaggagaga aaatgttaaa acaaatcgca tttggtagta
    16501 tagctcttac agctacagga tatggcataa aaaaattata cgaaaaatta tccaagccag
    16561 aaagaaaatt tgatacacat gctattgttc caagctgtaa agatatgatc aataccgaag
    16621 aatacaaact caaaagagag cttgaaatcg aacaaaagaa aaatcaaatt caagaatttc
    16681 tttgcgaatg tatggagtgt tatagcggct tttcaaaata ttttaattct aaggaatttt
    16741 tagaatttga gcaaaatttt acctctaaaa ataatcataa aacagaattt cttttgtcgt
    16801 cttataaaga tcaaatgata aaagtgatcg actatgctaa aaaatttgaa tgcttgagtg
    16861 cttttttgga aacacaaagc gaaaaaaatg acttagcggt tgtaaaaatg ataagcgaaa
    16921 gtatggagag aaaaacacag agattttatc tgcaaacaaa atttcaaact tttcctcagt
    16981 atatttttcc ttctgtgtgg agttctccta tgtggaataa acaatgggaa taatgcttgg
    17041 aattttaagc cttatagctg gctttgttgc catagtgttg atgtgtagtt tgtattttat
    17101 agtgtttatg gtttttgttg gcatagcgat acttattttt ctttctatgc aaccttatcc
    17161 ttataatata atattttgtg ctatatattt aatcacaatt ttagcgctag tgctatggcg
    17221 taaaacttaa aaatttcact tcccccttga ctgggggggg atttgataaa atacaaagtt
    17281 aaaaatttta aaaacaagga gaaagtatgg caaataatga gtttaatttc aacaatggat
    17341 ctttttttaa cgagataatg acaatgtttg aaaaaatcaa aaaagaagaa caagaaaata
    17401 ataagttaaa tgttttaata cttggaaaaa caggtgcagg aaaaagtact ttaattaata
    17461 ccgtatttgg tgaaaaagta gccaaaacag gtagcggctc tccaatcact gctaatttaa
    17521 acaaatatga aaaagatgga ctttgtatat atgatagtaa aggtcttgaa ataaaagatg
    17581 acaaaggtat tgataactta aaacaattta tcgaagatca aaaagcaaaa gaaccttcag
    17641 atcaaattca tttggtatgg ttttgtattt gtgaagcaaa tcgaagaata gaaccacaag
    17701 aaaaagaatt aataaaattt ttaaaatctg aaaaattttg tacaatattg gttatcacta
    17761 aagctcaaca agataaagat gaaaatggtt gtagttttaa ggatattgtt aaaaaagagc
    17821 ttgaattaga tgatgaaaaa atagaaagag taagagctat agcaattgaa gatgatgaag
    17881 gaaatgttaa aaaactttta ggtattaaag agttagtcaa taaaacttat tgttttttaa
    17941 atgaaggaca aaaaaatgct tttgcaagaa aacaacaata tgataaagat ttaaaaagag
    18001 aagcttgcaa agaaaaggct caagataaga ttaaatatta tgcaggatta tcttcaactg
    18061 tagcattatc tcctatacct ttttctgact ttcctcttat tgcaaccaat caatgtgcta
    18121 tgatttatca tattagtatg atttacgagc ttaatttaag cagtaaagat gatgctttaa
    18181 aaattttaac agctttactt gctacaggtg ttacaggatt tgcagtcaaa acgcttgcta
    18241 caggtcttat gaaatttatt cctggtgtca attttatagg tggagctatt aacgcaacag
    18301 tagcctacaa cgccactaaa aaaatcggag aattttatat agattattta gatgaacatt
    18361 ttgaagatat acaaaatgga aaaaaacttg attttgaatt taaaaattta tcaatagaaa
    18421 aataagcaat aaatcatgat taagcctatt ccaaaatttc aaaaatgtat aaaatgtggc
    18481 aaaagttttt tagctaaacc taaaagcgat gctttaaata ctttagattt tatatgtagt
    18541 gattgcaaag gcgaaaaaag tggattttta agttctttgt ttgaaatttt taaaccaaaa
    18601 cactaatcaa ggaaaagaaa tgttttctaa gattttctca tctcttagtc ttgcaaatgc
    18661 gtttaaaggc tttttattta aacgcatttc aagccctatg caaagtgctc gtattatcag
    18721 tatggtttta gatataaaaa atgcttttaa tgacagcaaa gatcaagcaa gtagtatttg
    18781 taaaactttg gatttgatag taaattttaa aaaagaacac ccgcaggatt ttaacgagtt
    18841 gtttgaaatt ttaaaagatc tcatacaaga atacgagcaa aatcctaatg aaatcaagca
    18901 aaatctcaaa gaaatcctaa aataaggcaa aatatgaacc accttttaat cctttataac
    18961 ccctactatc aagaagatgt catcaagcaa cacttaagca ttttgcaaga aaaatcccaa
    19021 gttgcctttg gcaaaatcaa atcaaagctc aacgatcaag aaaagcaaaa ttccttagaa
    19081 gaaatttacc aaagtacaaa tgaagaaaat ttcttgcaac tctttttaag cgattatgct
    19141 aatttatttg tcgctaaggt gataaaaatt tctaaaaatg ttgatgaaag tttgattcct
    19201 agttattata aagaaaaaaa tttagaagtg gaagactttt ttattatcag tgatttaaga
    19261 gaattggtca gggaagattt tagtctttta agagataaat ttttagccaa tttcatcacc
    19321 ccaaacgatc acacttatgc tatttatggc aataattaca cctatccttt gcctgtgaga
    19381 ttaaaagaag agtgttctta ttttttagga gatgaaaagc attatttaag cgtgtataaa
    19441 agtaaagaat acctagccat gcaagaaaat ttcatacgct ttgtttttgg caaaaggatt
    19501 ttttatctct tgcaccctga tagcataagc aatatcattc atgcagaatt agagcttttg
    19561 caaagcgaaa acgatctttt aaatgatttt acaagcatta tagtcaaata ctccaaaacc
    19621 ttagaatatg aaatttatgc ttttgccaaa aaagttcttt taaaagcttg tatgaaagat
    19681 cctagccttt atgatttaac ttataatgtc caaagcaaat cttttatact taaagatttt
    19741 tttacccaaa aacccaatct tggaagtatt aaatttctac tcagacatga aaatatccaa
    19801 tgtcatttag gaaaaagttt aactcaattt atcaattatc ctttttcaaa aagtcttact
    19861 ctcattcaag aaatccgcaa tgaagccgtt catgcaaaag ccccaagttt aaatgaagtc
    19921 aaaaaactta gaaatgaaat tttaggcata gaaggcgtaa gtttgttaaa aagcatttta
    19981 actcacaagg aaatttcatg aaagaatacg acaaattaag catacgcttg gtgcagattt
    20041 tatcaaaatt taacaatggg gaaagtctaa gcgcccaaga gcttgcacaa gagtttaatg
    20101 tcgatacaag aaccatacaa agggatctta acgaaagact tacttttatg cctattaaaa
    20161 aagaaaatgg aagatatgtt ttagaaagct ttgctttggg aaaattaagc tttaaagaca
    20221 tacagaattt tgccacctta agtggtattg ctgagcttta tccaaaactc gatcaaggct
    20281 ttatagtcga tcttttaagc catagggtaa ataaagtttt gatggtaaaa aatgaaggtt
    20341 ttcaaaaggt ggattatgag ctttttaaag atcttagtgt agctatactc aaacacaatg
    20401 tattgaattt tttctacaag aaaaaagaac gccaaatcaa accttacaaa ctcgtaaatt
    20461 acaaaggaat ttggtatctt ttaggggatg aaaatgataa attaaaacat tttaatttag
    20521 ataaaatttc aaaacttcgc actaaaaatg aaaattttat tcccaatgaa aaacttcaag
    20581 aacaaatcca aaatgatcct aatatctggc ttggagaaag caaagaagtg attttaaaac
    20641 ttgataaaaa tgctaaggaa tattttttta gaaaagaaat actaagtaat tatcaaatca
    20701 ttgataaaga tgaaacaagc tatactttaa gcactcaagt ttcctatgaa gatgaaattt
    20761 tacatttggt taaacagtgg attccttata taaaaattct agctcctata gaactgaaaa
    20821 tacggctaga agatatttta aaaagttatt taaacaatct atctaaataa aatttatttt
    20881 aaatccataa ctggttgcga aggggagatt tgaactcccg accttcgggt tatgagcccg
    20941 acgagctaac cactgctcta cttcgcggca tataagatct ttgaaatata aaataagaag
    21001 tggatggggt aaagggattc gaacccctga atgacaggac caaaacctgt tgccttaccg
    21061 cttggcgata ccccaataaa tattttttaa aagtgtgatt ataatgaatt ttaatttatt
    21121 tgtcaagcaa tttaagttat aattttaaaa attttgagga aataaaaatg aaatttgtta
    21181 gcgtagaaca agcgattaag gatttacaag caggaaaaat gcttgttatg gtagatgcag
    21241 aagatagaga aaatgaaggc gatttaatct ttcctgcgca atttagtact caagaaaaag
    21301 taaatttcat gataaaagaa gctcgtggtg tggtttgtgt agccttagat gaaactttgg
    21361 caaaaaaatt tgaacttcct ttaatggtgc ctaaaaatac ttcaaaccac gaaactgctt
    21421 ttactataac cgtagatgca aaagatgcta caacgggagt tagcgcctat gaaagaaata
    21481 tgactataca aatttttgcc gatgataatg ctaaggcgag tgattttgta agaccagggc
    21541 atatcaatcc tttaatcgca aaaaaaggtg gggttttaga acgcacaggt catacagaag
    21601 gcacggttga tctttgtaaa ttagcaggat taaaaggtgc ttgtgtgatt tgtgaaattg
    21661 taaaagataa tggagatatg gcaagaagag aagatctaga aattttttgc caaaaacatg
    21721 atttaaatat gatagccgta agcgatctta tagaatatcg cctaaaacat gaaagtctta
    21781 ttaagcttga agaaaaaagt caaagtgttt tagcaggctt taaagcagaa aaatttatct
    21841 ttagtgatca taatcaaacc caacacatag ctttttgctt taaagatatc aaaaaatgtg
    21901 aaaatgttaa atttcatatc agtggtagtg attttgagct tttaacttca gataaatttt
    21961 caaaactttt agagcaaatc aaatttctta gtgaaaatgg tggcgttata gttttcatgc
    22021 aaggagaaaa atccagcacc actcaataca aaaactatgg tataggagca cagattttaa
    22081 gatattttgg tatagaagaa attaaacttt tatctcaaag ttgtgataaa gactatatag
    22141 gcttagaagg ttttggttta aaccttaaag cttgtaattt taactaaaaa ggaaaaaaat
    22201 gactttaaaa gaacaaattt taaacgatat caaagaggca atgaaacaaa aagatgattt
    22261 taaaagagat agtttaagaa ctctaaatgc agcttttaag caaatagaag tggatgaaag
    22321 aatagagttg gataatgaaa gaatttataa aatcattgca agtgaaatca aaaaacgcaa
    22381 agacgcaatc gaactttatc ttaaggcaaa tcgtgaagat ttagcacaaa aagaacaaaa
    22441 tgaaataagt ctttttgaaa tttatctgcc taaacaacta agtgatgagg agttaacttt
    22501 agccttaaaa caacttatag aagaattggg cgtaagttca ctaaaagaac aaggtttggt
    22561 aatgaaagaa gctaaaataa aattaggtgc gagtgttgat ggcaaaagac ttaatttagc
    22621 acttaaagag cttttacaat aattttttgg agtgttatta tgaaagagtt aagcggttcg
    22681 gcaatgattt gcgaggcttt aaaagaagaa aatgttaaaa ttgtttttgg ttatcctgga
    22741 ggcgctgcgc ttaatattta tgatgaaatt tacaatcaaa agtattttaa acatatttta
    22801 gtgcgtcatg aacaagcggc tttgcatgct gctgatgctt acgcaagaat gagcggagaa
    22861 gtgggcgtag ctatagttac aagcggacca ggttttacaa atactattac aggtctagct
    22921 acggcttata gcgattctat ccctttggtg ttgatttcag ggcaggtggc aaattctctt
    22981 attggtacag atgcttttca agaaattgat gcagtaggca tttcaagacc ttgtgtaaag
    23041 cataattatt tagttacttg tatagaagag tttccacgca ttttaaaaga ggctttttat
    23101 atagcaagaa gtggtagacc tgggcctgtg catatagatg tgccaaaaga cgtaagtgca
    23161 actttgggac tttgggaata ctctaaagaa atttccatga agacttataa gcccgtttat
    23221 aagggtaact caaagcaaat taaaaaattt gcagagcttt taaaagaagc aaaaagacct
    23281 ttgttttact taggtggagg ttgcatcagt tctaatgcaa gcgagcaaat cagagagctt
    23341 ataaaattta caaaaattcc agcagttgaa actttgatgg cgcttggaac tttaagaagt
    23401 gatgatgttt ttaatcttaa aatggcaggt atgcatggaa gctatgctgc taatatggct
    23461 ttaagtgagt gtgatttgct tgtgagtgta ggagcgagat ttgatgatag gattacagga
    23521 aaaacaagtg aatttgctaa acatgcgact atagttcatg ttgatattga tcctagttct
    23581 atttcaaaga ttatcaatgc gcattatcct atagtaggag atattaaaga agttcttaaa
    23641 gagcttttag aagagcttaa aaaggaaaat ttcaacacaa cttttaaaga atggcacgaa
    23701 actttaaagc gttataatga actttatccg ctttcttatg aagatagcaa tgagatttta
    23761 aaaccgcaat gggtgattga agaatgtgcg aaaatggctc cagatgcaag gattattacc
    23821 gatgtgggtc agcatcaaat gtgggtggca cagttttatc cttttaatta tccaagacaa
    23881 cttgcaacaa gtggagggca aggaactatg ggatattctt tacctgctgc tttgggtgca
    23941 aagcttgccg tgggtgaaga agtggtgatt aatttcgtag gtgatggatc ggttttaatg
    24001 aatatccaag agcttatgac tgcttatgag tatggtataa aaactataaa tattatttta
    24061 aataatgcct ttttaggtat ggtaagacaa tggcaaagta tgttttataa agagcatttt
    24121 tcacaaactg atttaagcac tcagcctgat tttatcaaaa ttgctcaagg ttttggttgt
    24181 gaaggttatg aaatttcaag caaagaagaa ttcattcaag cttttagcca agctttaaaa
    24241 agtgataaaa cctctctttt aaatgtaaaa attgatcgct ttgaagatgt tttacctatg
    24301 gtgcctgcag gaggtgcgat ttataatatg attttaccaa aggcaaagga tagacaatga
    24361 gaagggtttt atcggtaatt gttttaaatg agcatggggt tttatctcgt atagtaggac
    24421 ttttttcagg aagaggttat aatattgact cgcttacagt agcacctttg gaaaataaag
    24481 aattttctcg tattaatata gtcacctcag gaaatgaaag aacttttgag cagatagtca
    24541 aacaacttca taagctcatt cctacttata aagtgataga aagtgaagaa tttattgaca
    24601 aagaaatggc tttagtgaaa attcctttaa atgaaaattt aggtggactt gatgccgttt
    24661 tgaaagctta taatggtact attgcaaata gcaatgagaa ttttttgttt ttaatggttg
    24721 ctgatgatgc aaatcgcatt gataattttt taaaaacaat taaaaaatac aatcctagtg
    24781 atatagttcg cagtggatct gttttgatgg agattaaatg aaattaagtg aaatagcaga
    24841 atttttaagc ttggaatata aaggcgagga tatagaaatc agtgctttaa attctttatt
    24901 gaaagcaaat tttacagagc ttacttattg tgatggtgag aaaaatacca aagatatacc
    24961 tcacacagga gctgctgcta ttttagtatc taaagaatat gaaaatttag tacctaaaga
    25021 tactaaagct ttgattactc aaagtccaca tttgagtttt gcttttttaa gcaagctttt
    25081 tgctaaacct ttgataagca cagctaaaga aaaagtacaa aatatcgcaa aaagcgcaag
    25141 aatcatgcct aatgtttata taggtgataa tgtaaatatc ggtgaaaatg taatcattat
    25201 ggcgggagct tatataggcg ataatgtcag cattggtgat gagagtatta tccatcctaa
    25261 tgtagtgatt tataatgata ctaaaatcgg taaaaaatgt catttgcttg ccaattgtgt
    25321 aataggaagc gatggctttg gttatgcgca caataaaaac ggcgaacatt ataaaattta
    25381 tcataatggc aatgtggttt tagaagattt tgtagaagtg ggggcttgta caactataga
    25441 tagagcagtt tttgatagta ctattatcaa agcaggtact aaggtagaca atctagttca
    25501 aatcggacat aattgcaata taggtcaaaa ttgtatcatt gtggcacaaa ctggaatttc
    25561 aggttcaagt gagttaggac gcaatgttat tatgggtggt caaagtgcaa cgagtggaca
    25621 tttaaaaata ggcgatttta gtactatagc tgcaagaggc ggtgtgagta aaaatttaga
    25681 aggcgggcgt gtttatggag gttttcctat catgcttcaa aaagattggc taaaacttca
    25741 agctaaaata gcaataaatt ttaaagaaaa atcacaagat taacatcgca tcgccataag
    25801 agtaaaagcg atatttttct tttatggcga gttcataaag ttttaaacac tgttctctac
    25861 cgataaaagc tgaaactagc atgataagag tagattttgg taaatgaaaa ttggttaaaa
    25921 gatgattttg tcttataggt ggattttgcg ggtgtaaaaa aagatcacaa aaaccatttt
    25981 ttgttttagt tcttgcataa tattctatgg ttcttgttac cgttgttcct acgcctaaaa
    26041 tagcttgttt agaatctata atttcacatg cttgctgcgg aatattaaaa aattcgctat
    26101 gcattttatg ctcttgtata ttttcgcatt ccacgctttt aaaggttcca gctcctacat
    26161 gtaaggttaa atgataaatt tcgtgttttt ttcttaaatt ttcaagcata gtctcactaa
    26221 aatgtaaact tgcagtcgga gcagccactg cacctaaatt ttttgcaaag atactttgat
    26281 aatctttcaa atcacttttt tcatcctccc ttttaatata aggaggcaag ggtatatgtc
    26341 ctatcttgtc aagcaggttg taaagatttg aggtgtctaa ggttttatca ttttgaaaaa
    26401 attgaacttt tcgaagacca tcatttaaaa gttctacaac gcgtactttt aaatcatctt
    26461 taaaatataa gatttcatct tttttaacac gccctttaat ttgagctaga aaaagcggat
    26521 cgtgagaatt taaaaaaggt tgatgcaaga aaagctctat ttttcctccg cttgctttat
    26581 tgccataaat tcttgcttta ataactttgg tatcattgaa aaaaatcgcg cagttgggta
    26641 aaaagtcttg taaattttta aaagtagtat gaaaaatttc tttgtttttg cgatcaaaaa
    26701 ccaaaagcct agcatcttct tttggatttg taggatagtt ggctatgagt tcattagcta
    26761 gagtgtaatc atagcttgaa agaagtaagt ctttattcat cactttcttt atcttttgga
    26821 gcaggattta ccttttgaac aattaaaata gaaagtccat aaagtccgca aagtggtcct
    26881 gccattaaaa attgagataa aacatcaggt ggagtcataa aggctgaaaa aacaaaaata
    26941 actaaaacag ctatgcgaaa atggcgtttt aaaaaactat catctataag tccgatttta
    27001 gcaaagaaaa aggcaattac aggcatttca aaagctaagc caaaagccac aacaactttc
    27061 gtaaaaaaat ctacataagt tcctatggta atcacaggat taaaatcttc atttaaacca
    27121 aaattaatta aaaatttaaa agccaaaggc actacaacaa aatagcaaaa acaagccccc
    27181 aaggcaaaca taatgcttgc aaagctaaca aaaggcacca caaggcgttt ttcattatca
    27241 taaagtcctg gagctacaaa tttccaaaat tgccaaaaaa ttacaggtag agaaaagata
    27301 aaggctgcaa aaaaactaac cttcattgcg gtaaataagg cttcttgtac ttcaattaca
    27361 ttcacatgtt tggctacttc gggtaaaaca gctataagtg gagcttttaa aatatctaag
    27421 atatagcttc gtagagcaaa acatacaata aacataacta caatgcaagc aacgcttata
    27481 aaaaggcgtt ttctaagttc tattaaatga ggtcttaatt cttcaaacat ttatttttcc
    27541 gttttatctt gtgtttctaa tttgctaaga tttggttttt cctctgtatt taaattttgt
    27601 ccgctaaggt tattttttac tttatcatct ctgctatcaa aggttaaatc tacctttgtt
    27661 ttatctaaaa tatctctttt aaggtcatca aattcttcaa aactgagttt tttgcgtata
    27721 ttttcattag tgcttgaaaa ttcatctttg tatttcttag cttcttcttt taagtcattg
    27781 atgcgtattt ctttttctat gcttgatttt gcatcatcta tgttgcgttt tacagccttt
    27841 agaatttttg ctatttgcac tatagcttct ggaagtttat caggccctaa gactaaaatc
    27901 gctacaacta aaataactat aatttcacca aaactcatta atcgttactc tttgatttga
    27961 tattttaaat aaatatttta cttaaaaaac ttaaatttaa gatgagagat ataaagcaag
    28021 ttcgtcgcta atgagaaaat taggattaaa atatctttta tttttgtaaa agagtttttt
    28081 ttcttttaat aatatattta ttttgtcttt ttgccattga ttgagttttg tttcatcaat
    28141 ccctactata cttctaagtc ctaaaaatag gtgttctaaa ttcaagtctt tagagcttag
    28201 ttgctctata gatctaaaag tgggattttc tatgtaattt tttaaatttt ttgctgtata
    28261 aaaacgctta ttttcataaa atcctaccgc acttaatcca caagctaggt agttttttcc
    28321 ttgccaataa gcaagattat gtttgcaaat ttgggctttg gtttttgaaa aattgctgat
    28381 ttcatattga aaaaagtcaa gctctagaag ttgtttgata aaaaatttca ttaaattagg
    28441 agcatttttt ttgaaatgtt cttttttggt aaaggctgtg tttgattcta tggttaaatt
    28501 ataagcacta aggtgtgtga ttaaagcctt gatttgtttt aagtgtaaga gttcaaattc
    28561 aagcattttt ttattgtcta attttgtatc ataaataaga tctaaattga tatttttaaa
    28621 acctacttta tttgcatttt ctaatgcttt gataatcatt tcttgattgt gaattcttcc
    28681 aagaaagtga agttttttag gatgaaaact ttgagctcca aaagaaatgc gattaactcc
    28741 tagatttttc atatttttaa gccaatttaa tgttgctgag ttgggattag cttcgcatga
    28801 aatttctaca tttttatcta gtaagggata taaaatttta aaaatatctt cataattata
    28861 cgcatcgaca caacttggtg ttcctccgcc tatgaataag gttttaattt gatttgattg
    28921 aatgttaaat tgttttaatt gaaaaacaat atcttctttt aaagcctgaa aataggcttt
    28981 ttcataatca ttttttttca aacttgtaaa agcgcaataa ttacatttgc tttcacaaaa
    29041 tggaatatgg atataaaaat gcataaaaac cctaaaatat tttattaaat ttttaatgta
    29101 ttttaataaa aatttgattt gatttaggtt aaaattatat ccttgagatt taaggaaaaa
    29161 tattgtggaa aacgagaaaa attatagacc aaatgttgca gctattgttt tatcaagttc
    29221 ttatcctttc gagtgtaaga tttttatagc taaaagaagt gatatggata atatttggca
    29281 atttccacaa ggaggcattg ataaaggtga aagtgtcaaa aacgctttat ttagagaatt
    29341 aaaagaagaa ataggcactg atgaggttga aatcattgct gagtatccag aatggttgag
    29401 ttatgatttt ccgagtaaaa ttgttaaaaa aatgtatcct tatgatgggc agattcaaaa
    29461 atatttttta gtgcgtttaa agcacggtgc tacaatcaat atcaatacca agcatcctga
    29521 atttgatgat tatcaatttg tgagtgttaa acaaattttt gaaatgatta atcatttcaa
    29581 aaaaaatatt tatgttaaag tgatcaaata ttttgaagag aaaggttata tctaaaatgc
    29641 ttatagttca aaaatatggt ggaacaagcg ttggaacact tgagcgtatc gaagcagtag
    29701 ccaatagggt tatccaaagt gtgcaacagg gtgatcaact tgttgttgta gtatctgcaa
    29761 tgagtggggt gacaaatact cttatcgagc aagctgaata ttttagtaaa actcctaatg
    29821 gtaaagatat ggatatgctt ttaagcagtg gagagcgtgt aagctgtgct ttactttcta
    29881 ttgctttaaa tgaaaagggt tatcctgcta tatcattttc tgggagaaaa gcgggaatta
    29941 ttacagatag tgtttttaca aaggcaagaa ttcatcatat tgatacaaaa gcgataaaat
    30001 cagaacttca aaatggtaaa atagtcgtta tagcaggttt tcaaggtgta gatgaggaag
    30061 gtaatgtaac taccttaggg cgtggtggaa gcgacttaag tgctgtggcg gtagcaggtg
    30121 ccttaaatgc ggatttgtgt gaaatttata ccgatgttga tggggtttat acaacagatc
    30181 caagaattga accaaaggca aagaaattgg ataaaatttc ttatgaagaa atgcttgaac
    30241 ttgcaagttt gggtgcaaaa gttttgcaaa atcgctctgt agagcttgca aaaaaattaa
    30301 atgttaactt agtaactaga agtagtttta acaataacga aggaacaatg ataacaaagg
    30361 aagatggaat ggaacaagct ttagtaagtg gtattgcttt ggataaaaat caagcaagag
    30421 tgactttaag aaatgtagaa gataagcctg gaatcgcagc tgaaattttt tctgttttgg
    30481 caaatgaaaa tattaatgta gatatgatta tacaaaatgt tggagttgat ggcgctacaa
    30541 atttgggttt tacagttcct caaaatgaac ttgaattagc caaaaatgct atgcaaaaaa
    30601 ttttaagctc aaaaacaact atagaaagtg atagtgctgt agtaaaagtt tctatagtcg
    30661 gcgtaggcat gaaatcacat tcaggagtgg caagtaaagc ttttaaagct ttagctgatg
    30721 aggggattaa tatcggtatg atttctacta gtgaaattaa aatttcaatg atagttcatg
    30781 aaaaatacgg agaacttgca gttagagcac tacatgagtg ctacggactt gataaataaa
    30841 tgagtgattt tttaagtttt actcttgaaa atattcgcaa tggcggagct tttatggcat
    30901 ggttggagtc gcgtcgttta gaatgggctc ctttgatggc tgcaagactt aaatatcttt
    30961 tagagggacg cacttttgtc ttaatgtgcg atgaacaaag atcttggtat gaagagtatt
    31021 ttttaaaaaa tataaattca aaagccgctc gtcctatgct tccttttgtg tcgttaaatt
    31081 ctttatgcaa gaagaaagta caaagttcag aagatatagc tttacttaat gacttgcttg
    31141 acatttcttt tcctaatggt tatgtgtatt tttatatagg aagtgcttct gataataaat
    31201 ctttaatcgc taaatcaaga gatgatagtt tattgtggct ttttgatgag cagttacaag
    31261 atagttttta tttaaattct aaagataaag acttggatat caagcttatt agtttatatc
    31321 aactttttga tgtaagtttg gatgcaatat tattttccaa ggtgcaatta ggataaatat
    31381 tttgtttatt agtaagatta ttatcagcga agatttttta ggtattaaag aagaaatgat
    31441 taataatttt ggtattaaaa aattaagatt ttttatgcca caaaatgaat ttttacttga
    31501 tgatgcaaga gcggttgaaa aagaaagcta tattgcagaa actgaagaaa aaattattgt
    31561 tttaatggcg gattcttata ggatagaagc acaaaatttt ttacttaaac ttcttgaaga
    31621 gcctccaaaa aatattaaat ttcttattgt ggtaccttct aaaaatttac ttttacctac
    31681 cataaaatcg cgtcttattt gcgaaaaaag aaaagttgaa aaggaagtta aaaaacttga
    31741 tttagatctt aaaagaatgg atttaagaat gctttttgat tttttgcaaa aaaatgaaaa
    31801 tttggataaa aatgaactta tggatcaaat cgcattactt gctaaagaat gtgtgaaata
    31861 taaagatttt aatgctgaag aattagagtt tttttatgaa ggctatgagc ttgcaaaatt
    31921 aaattctaaa agcggggtgc ttttagctac tcttttgtta aattactata caaagaaata
    31981 aaatgaaatt ttttaaaatc aatccaaata ccgattttaa tttgctttgt tctttcataa
    32041 atccccataa aatgggacaa aagattatga gtgaaaaaac aaaaattcat tttattttta
    32101 tcaaagatat ttccactcct gcagcaaata ttttaaaaca agatgcttta agaataggag
    32161 ctgaacttat tactcataaa gaagtaatta ctgcaaaaat cactcattca aatgcacttt
    32221 taatggcaag taaagagcaa attcaaaagc ttattgctaa agaaaaactt caagattttg
    32281 gacttaaaaa tttggctctt tttttacaaa aagatttttt aaaaccaaaa aaagctgagc
    32341 ttatggcagt gattaatgtc aatgaagaca gttttaatgc aaaaagtcgt gtgagtgaag
    32401 aagactttga aaaaaggctt aatgactttc ttgctttaaa gcctgcgtat atcgatatag
    32461 gtgcggttag ttcaagacct gggagtgagt attgtggcaa ggaagaggaa tttaaaagac
    32521 tgaaaaaagt acttgactta atttatgaga aaaattatta cgaacaagca atttttagtt
    32581 tagatagttt tgatgaatat tgtctagaat atgctttaaa taagggtttt aaactcatta
    32641 atgatattac aagtttaaga aatcttaatc tagctaaact tgcaagtaaa tatgaggcaa
    32701 aatattgctt aatgcacatg caaaacaatc caaataacat gcaagataat ccttcttatg
    32761 aagatttgct tgatgagatg actttgtttt ttaaagaaaa acttgaactt ttagaaagtt
    32821 ttggagtaaa agaaagtatt ttagatgtag gtattggttt tggaaagagt gcggggcata
    32881 atatgatttt aatcaaacac ttagagcatt ttttgcaatt taataagcct ttacttatag
    32941 gtgcgagtcg caaaagtgtg attaatgcgt attttcaaag cgagattaaa gatcgtttag
    33001 caggaacttt gtatttgcat ttaaaagctt ttgaaaatgg tgctagtatt ataagagtgc
    33061 atgatttata tgaacataaa caactttttg ctttagcgca ggcaatggat aatataggag
    33121 tttagatgaa aaaagaagag tatttagaaa aagttgcttt agcaaatttg tggatgaggg
    33181 catattatga aaaagatgaa cccttggcta gcgatgaaga atacgatgct ttaatcagag
    33241 aattaagtgt ttttgaagaa caaaacaaag atgaaatttc aaaagactct ccaacgcaaa
    33301 aaatagctcc tatcatacaa agcgagttta aaaaaatagc tcatttaagg cgtatgtggt
    33361 cgatggaaga tgtgtttgat gagagtgagc ttagggcttg ggcaaaacgc gcaaaatgtg
    33421 aaaaaaactt ttttatagag cctaaatttg atggagcgag tttaaattta ctttatgaaa
    33481 atggtaaatt agtaagcggt gccactaggg gcgatggcga agtgggtgag gatataacgc
    33541 ttaatgtttt tgagatagaa aatataccta aaaatatagc ctataaagaa aggatagaaa
    33601 ttcgtggaga agtggtgatt ttaaaagatg attttgagaa aatcaacgaa aaaagagccc
    33661 ttttaaatca aagtttattt gctaatccac gcaatgctgc aagcgggagt ttaaggcagc
    33721 ttgatacaag catcactaaa gaaagaaatt tgaaatttta tccttgggga gtaggggaaa
    33781 ataccttaaa tttcaccaaa cacagcgagg tgatgcaatt tatcagagag cttggttttt
    33841 taaaagatga ttttgtaaga ctttgcgcta atttagacga agttttaaaa gcttatgatg
    33901 agcttttagc tctaagagaa aaaaaaccta tgatgatgga tggaatggtg gtaagagttg
    33961 atgatcttgc actttgtgaa gaattaggct atacggtaaa atttccaaaa tttatggcag
    34021 cttttaaatt tcctgcactt gaaaaaacca cgcgtttaat aggggtaaat ttacaagtag
    34081 gaagaagtgg agtgatcact cctgtggcgg ttttagaacc tgtaaattta gatggggttg
    34141 tagtaaaatc agccaccctt cataattttg atgaaattgc aagacttgat gttaaaatca
    34201 atgattttgt aagcgtgata agaagtggtg atgttattcc taagatcact aaggttttta
    34261 aagagcgtag agaaggttta gagatggaaa tttcacgccc taaactttgt cctacttgcc
    34321 aaagtgagct tttggatgaa ggaactttaa taaaatgtca aaatatagat tgtgaagata
    34381 gacttgtaaa ttctatcatt cattttgttt ctaaaaaatg tcttaatatc gacggacttg
    34441 gagaaaatat agtagaactt ttatacaagc acaaaaaaat cactacgctt gagagcattt
    34501 ttcatttaaa atttagtgat tttgaaggtt tggaaggctt taaagaaaag aaaatcaaca
    34561 atcttttaaa tgccatagag caagccagag aatgtgagct ttttcgtttt atcacggctt
    34621 tagggataga gcatattggc gaggttgcgg ctaaaaaatt aagtttaagt tttggtaaag
    34681 agtggcacaa gcaaagcttt gaagcttatg ccaatttaga aggttttgga gagcaaatgg
    34741 ctttaagtct ttgcgaattt acgcgtgtta atcatacaag aattgatgaa ttttacaagc
    34801 ttttaaattt gaaaatagaa aaacttgaaa tcaaaagtga tagtatgatt tttggtaaaa
    34861 cttttgtgat tacaggtact ctttcacgtc caagagatga gtttaaggct ttgatagaaa
    34921 agcttggggg taaggtaagc ggctctgttt ctaaaaagac tgactatgtg ctttttggag
    34981 aagaggcagg ttctaaactt agcaaggcta aagagcttga agtaaaatgt ataaatgaaa
    35041 gtgcttttaa tgagcttgtt aaagaatagt tcttatattt taacgctttt aagccttttt
    35101 ggctttttgc taacttggca aaggagtgct ttttctttat tttttttaat tcctattttt
    35161 ttaacacttt tttgggaatt ctttttattt ttaaagctta gaaaaaatat tataaaagaa
    35221 gctactttga ttaagggaag tttgttttat cgtattagta tgggggattt ttatctttat
    35281 atttttagct tt
//
LOCUS       DARGBD010000006        34685 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.006, whole genome shotgun sequence.
ACCESSION   DARGBD010000006 DARGBD010000000
VERSION     DARGBD010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 34685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34685
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.006"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            91..3579
                     /locus_tag="SFZ04_000234"
     CDS             91..3579
                     /locus_tag="SFZ04_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEG8064547.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILVQNRAWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIKDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFINNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
     gene            3597..5066
                     /gene="putP"
                     /locus_tag="SFZ04_000235"
     CDS             3597..5066
                     /gene="putP"
                     /locus_tag="SFZ04_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HEG8064548.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(5082..5309)
                     /gene="yedF"
                     /locus_tag="SFZ04_000236"
     CDS             complement(5082..5309)
                     /gene="yedF"
                     /locus_tag="SFZ04_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG8064549.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDVKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(5313..6521)
                     /gene="yedE"
                     /locus_tag="SFZ04_000237"
     CDS             complement(5313..6521)
                     /gene="yedE"
                     /locus_tag="SFZ04_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HEG8064550.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGIIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            6661..6758
                     /locus_tag="SFZ04_000238"
     tRNA            6661..6758
                     /locus_tag="SFZ04_000238"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6695..6697,aa:Sec,seq:tca)
     gene            6786..8036
                     /locus_tag="SFZ04_000239"
     CDS             6786..8036
                     /locus_tag="SFZ04_000239"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEG8064551.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            8033..8461
                     /locus_tag="SFZ04_000240"
     CDS             8033..8461
                     /locus_tag="SFZ04_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HEG8064552.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            8454..8972
                     /locus_tag="SFZ04_000241"
     CDS             8454..8972
                     /locus_tag="SFZ04_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HEG8064553.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            9065..9616
                     /locus_tag="SFZ04_000242"
     CDS             9065..9616
                     /locus_tag="SFZ04_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HEG8064554.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            9616..10734
                     /gene="carA"
                     /locus_tag="SFZ04_000243"
     CDS             9616..10734
                     /gene="carA"
                     /locus_tag="SFZ04_000243"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEG8064555.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            10731..11390
                     /locus_tag="SFZ04_000244"
     CDS             10731..11390
                     /locus_tag="SFZ04_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG8064556.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGILVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            11387..12598
                     /locus_tag="SFZ04_000245"
     CDS             11387..12598
                     /locus_tag="SFZ04_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HEG8064557.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHNVSNSFKLNEELALNHAKLRELSINLENTAKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EIFLKLKERVE"
     gene            12601..13281
                     /locus_tag="SFZ04_000246"
     CDS             12601..13281
                     /locus_tag="SFZ04_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8064558.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            13407..14873
                     /gene="ccoN"
                     /locus_tag="SFZ04_000247"
     CDS             13407..14873
                     /gene="ccoN"
                     /locus_tag="SFZ04_000247"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEG8064559.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKF
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            14886..15551
                     /gene="ccoO"
                     /locus_tag="SFZ04_000248"
     CDS             14886..15551
                     /gene="ccoO"
                     /locus_tag="SFZ04_000248"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEG8064560.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            15556..15819
                     /locus_tag="SFZ04_000249"
     CDS             15556..15819
                     /locus_tag="SFZ04_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HEG8064561.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            15819..16682
                     /locus_tag="SFZ04_000250"
     CDS             15819..16682
                     /locus_tag="SFZ04_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8064562.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            16679..16900
                     /locus_tag="SFZ04_000251"
     CDS             16679..16900
                     /locus_tag="SFZ04_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HEG8064563.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILAVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            16897..16998
                     /locus_tag="SFZ04_000252"
     CDS             16897..16998
                     /locus_tag="SFZ04_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064564.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            16995..17597
                     /locus_tag="SFZ04_000253"
     CDS             16995..17597
                     /locus_tag="SFZ04_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064565.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            17584..18105
                     /locus_tag="SFZ04_000254"
     CDS             17584..18105
                     /locus_tag="SFZ04_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG8064566.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            18102..20468
                     /locus_tag="SFZ04_000255"
     CDS             18102..20468
                     /locus_tag="SFZ04_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG8064567.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKIFDLKINTHYEINL
                     SKQEILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMI
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELIYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNDFDIKV
                     FANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEYCPYKLIYKKELK"
     gene            20465..23230
                     /locus_tag="SFZ04_000256"
     CDS             20465..23230
                     /locus_tag="SFZ04_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HEG8064568.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLITELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQKIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEVFIIDYKTGLAMQDKHKEQVGTYKIAISEILQKDKVRAFIVYCLEN
                     EIQILEI"
     gene            23314..23739
                     /gene="rplM"
                     /locus_tag="SFZ04_000257"
     CDS             23314..23739
                     /gene="rplM"
                     /locus_tag="SFZ04_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEG8064569.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKHFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            23742..24131
                     /gene="rpsI"
                     /locus_tag="SFZ04_000258"
     CDS             23742..24131
                     /gene="rpsI"
                     /locus_tag="SFZ04_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEG8064570.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDDDFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            24256..25215
                     /gene="cadF"
                     /locus_tag="SFZ04_000259"
     CDS             24256..25215
                     /gene="cadF"
                     /locus_tag="SFZ04_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HEG8064571.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGVRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGTGVKFCLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRPAPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            25215..25856
                     /locus_tag="SFZ04_000260"
     CDS             25215..25856
                     /locus_tag="SFZ04_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8064572.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLTYREIYTQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKSRSMVFLNAYEAVNYIARLN"
     gene            25948..29508
                     /gene="nifJ"
                     /locus_tag="SFZ04_000261"
     CDS             25948..29508
                     /gene="nifJ"
                     /locus_tag="SFZ04_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEG8064573.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            29532..29843
                     /locus_tag="SFZ04_000262"
     CDS             29532..29843
                     /locus_tag="SFZ04_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8064574.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            29821..31233
                     /gene="mshL"
                     /locus_tag="SFZ04_000263"
     CDS             29821..31233
                     /gene="mshL"
                     /locus_tag="SFZ04_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HEG8064575.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNENHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            31226..31834
                     /locus_tag="SFZ04_000264"
     CDS             31226..31834
                     /locus_tag="SFZ04_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8064576.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR"
     gene            31838..32425
                     /locus_tag="SFZ04_000265"
     CDS             31838..32425
                     /locus_tag="SFZ04_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG8064577.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
     gene            32415..33974
                     /locus_tag="SFZ04_000266"
     CDS             32415..33974
                     /locus_tag="SFZ04_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEG8064578.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLSCAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            33971..>34685
                     /locus_tag="SFZ04_000267"
     CDS             33971..>34685
                     /locus_tag="SFZ04_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEG8064579.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSC"
BASE COUNT        12518 a         4115 c         6303 g        11749 t
ORIGIN      
        1 tttttataca ttttctatga tttaaaatat tattttttat cttatttata tattatttat
       61 taaaatttat tttatcttag gagatacgaa atgatacaaa aagctttagc cttagctgaa
      121 gaattacaag gacaaataga agccaatatt tcaaattctg aaaaagaatt tcatgctaaa
      181 atgcaaaaac ttcttaataa tcccaaaaat aaagttatgc ttatagagct tttagatcgt
      241 tcttttagat gtaaagataa aaatgcaagt tttgagctta tagaatatac tttgagtaaa
      301 tatggcatag cggatttttt tagcactttt gaaaaattcc tactttttag ctttttaaat
      361 tttggcaaat ttgctcctaa tttaagtgta cctttttttg tcaaacattt aagagaagat
      421 actaaagcta tggttctaga tgcaaatcct agtgttttag aaccacatat taagaaaaga
      481 aaagagcaag ataaaattac cttaaatgtg aatttaatcg gcgaagaggt tttaggtgaa
      541 gctgagagta aatatcgtat gcaaaaatac gaagaagcct taaaatcaag ctatatcact
      601 tatatttcca taaaaattac tactattttt tcacaaatta atattataga ttttaattat
      661 tctaaagaag aggtcgtaaa aagactagat tatctttatg ctttagcctt agaagaagag
      721 aaaaaacaag gtgtatctaa atttatcaat cttgatatgg aagaatttag ggatttagag
      781 ctcaccgttg cagcttttat ggaaagtgtg gctaaatttg atattaaagc agggattgtt
      841 ttgcaagctt atattcctga ttcttataag tatcttaaaa aactttttgc tttttcaaaa
      901 gagagggttt taaaaggtat gaagcctatt aagatccgtt ttgttaaggg tgctaatatg
      961 gaaagtgaag aaaccattgc gtctcaaagg ggttgggagc ttcctacttt ttacaaaaaa
     1021 atagatactg atagtaatta taataaaatg cttgatttta ttcttgaagg agataattat
     1081 aaatacatca acataggaat tgcaagtcat aatatctttg agattgctta tgcttataca
     1141 cgcataagtg aagtgggtgc tttggattct tttacttttg aaatgcttga aggtatgagt
     1201 ttgcaatgtt cttatgaatt atctaaaatg catgatctaa tcctttatgc cccagtttgc
     1261 gatgaagcac attttaacaa tgccattgct tatcttgtaa gacgccttga tgaaaataca
     1321 agtgaagata attttatgcg ttattttttc aatcttaaag taggagataa gaactggaat
     1381 atccaaaaag aacttttttt aaaatcttta gaaggcataa aaactcttga taatactaca
     1441 catcgtaagc aagatagaaa taaagaatca aatatcataa gttcttatga aagtaaaaaa
     1501 tttagcaatg aaagcgatac ggattttatt ttagtacaaa atagagcgtg ggctaaagaa
     1561 attaaaacta aatatgaaaa tttaaaagat tatgatgttt atcctgttat aggcgaactt
     1621 gattttaaag cagaaaattt aaatgtttta gaagttaaag ataagatcaa agatagagtt
     1681 ataggaaagg cttatttagc aggagaaaaa gaaatcaaac aagctttaga agtagctaaa
     1741 aattccaaat ttacacaaaa aagtcatgat gaaatttatc aaattttagc caaaagtgca
     1801 aaactgatga gagaaagaag aggggatttg ataggtttgg cagctttaga agtgggcaaa
     1861 acctttttag agatcgatcc tgaagtaagc gaggctattg attttataga gttttatccg
     1921 cactctttag aagagcttaa aaaacaaaat ccaaaagtta cattcacacc taaaggtata
     1981 ggggttacca tagctccttg gaattttcct ataggaattt cagtaggtac tatagctgca
     2041 ccactagccg caggtaatgt ggtgatttac aaaccttctt cactttcaac tctaacaggt
     2101 tatatgcttt gtaagtgttt ttgggattcg ggtattccaa aagatgcttt gattttctta
     2161 ccttcaaaag gaagtgatat ttctaaatat ttacttattg atgaagcgat taaattttca
     2221 attcttacag gaggagagga tactgcttat gccatgttaa aagctaatcc aaccttgctt
     2281 ttaagtgctg aaactggcgg aaagaatgcg actatagttt ctaaatttgc tgatcgtgat
     2341 agtgcgatta aaaatatcat tcattctgct tttagcaata gcggtcaaaa atgttcagct
     2401 acttctttgc tagtcttaga agaagaggtt tatcatgatg aagaatttaa aaagacttta
     2461 gtggatgctg cgagttctat ggcagtgggc aatccttttg aatttaaaaa taaattaggt
     2521 actttagctg ataagccaag ttctaaagtt caaaaggcct tagatgaatt acaaccttat
     2581 gaagaatggg cattaaaacc taagttttta gaggataatc cttatttgat gactccaggc
     2641 ataaaatatg gcactaaaaa gggtgatttt actcatatga atgaactttt tgtaccgatt
     2701 ttaagtgtga tgaaggctaa agacttaaaa gaagctattg atatagtaaa ttccacaggt
     2761 tatggtttaa ctgcaggttt tgaaagctta gatgaaagag aatgggagta ttttcacact
     2821 cacatagaag caggaaatat ttatatcaat aaaccaacca caggggctat agtgctgcgt
     2881 caaccttttg gtgggattaa aaaatcagct ataggtttgg gtagaaaagt gggaatttat
     2941 aattatatca ctcaattttt agagattaag caagaagatt ttgatgatca tttaattgaa
     3001 gataaatttt caaaaaaatt agcacaaata gatttaaaag aagcacaaga ttttataaac
     3061 aatttaatta aaatgtctca atcttatgct tatcattata aaaacgagtt tagtgtttca
     3121 aaagattatg tcaatattcg tggagaagat aatctttttt cttatactaa aataaagaat
     3181 atggttttaa gactttgtgg aaatgaaagc ttaaaagatg ttttaggtgt ggttttaggt
     3241 gcaaatattg caaatattga tctaagtatc agttatgatg aacaagatgt tagtatgata
     3301 gaacgaattg ttcaaagcat aggagcaaaa gtattgtttt taaaagaaaa taaagaaaat
     3361 tttatcaaga gtattaaaga atatgaaaga gtgcgttatt tagcaaagcc agatgtaaat
     3421 gatgagattt ataaagaggc tgcaaagctt gctaaaatca ttataagaga aaagccatta
     3481 ttaaatggtc gttttgaact tttaaattat tttaatgaaa aagctttaag tatatctttt
     3541 catcgttatg gaaatttagg cattagagca atatcttaat gatcaaggag agattgatgg
     3601 aagtggttca aattaatacc ccaatagcag tgatgtttgt agtgtatgcc ttattaatgc
     3661 tttatatagg tttttatttt tataagcaaa ataaaaattc agaggattat tttctaggtg
     3721 ggcgtactat ggggcctgtg atatctgcac ttagcgcagg ggcttctgat atgagtggtt
     3781 ggcttttaat gggtttacca ggagctttat atgtaagtgg ttttatagat tcttatattg
     3841 caattgggct tactatagga gctagtttaa attggatttt tgtggcaaaa agacttagaa
     3901 tttataccag tgtgattgca aattctttga ctattcctga ttattttgaa actcgttttg
     3961 atgatgataa acatatactg cgcattgtat gtgcggtggt aattttgata ttttttacct
     4021 tttatgtttc atcagggctt gtaagcggag caaaactttt tgaaagtact tttggtatca
     4081 gatacgatta tgctttaact actggaacga ttattattgt tgcttatact tttttaggtg
     4141 gatataaggc ggtttgttgg acggatatga tacaagggct tttaatgatg atggctttaa
     4201 ttattgtacc tttggttatg ctttatcatt taggtggttt tggtgaagcg atgaatatag
     4261 taagagaaat aaagccacaa gctttatcta tgggcgaagg agtaggaatt gtaagcatta
     4321 tatctgcact tgcttggggt ttgggttatt ttggtcaacc acatatttta gtgcgtttta
     4381 tgtcgattcg ttctactaaa gatattccta tggccacttt tataggtatt gcttggatgg
     4441 cggtttgtct tttaagtgct tgtatgatag gtattttagg tatagcttat gtgcataaat
     4501 ttgaattaag tttgcaagat cctgaaaaga ttttcatcgt gatgtcgcag cttttattta
     4561 atccttggat agcaggtatt ttactcagtg ctattttagc ggctattatg agtacggcaa
     4621 gttcacaatt gctggtttca agttctacta tagcggaaga tttttataaa aagattttta
     4681 gagaagatgc accaagtcat attgtattaa atttaggtaa attaggtgtt ttattggtag
     4741 ctgtaatagc gtttttgatt tctactgata aaaactcaag tgttttgagt atagtttctt
     4801 atgcatgggc tggatttgga gcttcttttg gttctgtaat gcttttttct ttattttgga
     4861 gtaggatgac aagagtagga gcgatcttag gtatgataac aggagctgct actgtggtgc
     4921 tttggaagaa ttttgcaaat tcaggtcttt atgaaatagt tccagggttt ttagtagctt
     4981 cggtggtgat tattattgca agtttgttta caaatgtaag atctggaact aaggcagctt
     5041 atgaaaagat gttaaaagag ctttgagaat aaaagccttt tttaaggctt ttggattaaa
     5101 aatcttagtg tgggtccact ttgatcgatt tcaagcactt taaaaccacg gttttttaca
     5161 tcttgaggta tggaattgat actttgtggg caatcgcaaa gcacttccaa aatttctcca
     5221 cttttaagct taggtaagac atcaagtgtt gctatagcag gataaggaca agcttcacct
     5281 tgtaaattta aactataagt aattttcact gtttatcctt taagttgatt tttaaaaaag
     5341 tgttttttgt aaaatactac aaaaacaaac attaagatga ataaaataag gttgataaaa
     5401 aatccattta aattgccaaa ttcagttaaa agattgattt ttataccttc tttaaaagct
     5461 tttggtaaaa agtcataact taaagctaaa atcatagttc ctattatatt tgcaattcct
     5521 actattataa aatgactttg tccttcaaag gcacgataag tccaaccaca ctcgcaacct
     5581 ccggcaaaaa ctataccaaa accaaacaaa aatgctccca cagctacagc aggagaaagt
     5641 tctatgagtt tgctagtatg accttgcaag ataaaagcaa aagcgattaa agaggcgata
     5701 attataccga ttaatgcgcc ttttatagca ttatctctac caaataaaaa taaatctcta
     5761 aagcaagaag taaaacaaat ttgccctcta gaaataacaa agccaaaaac aaaaccaaaa
     5821 atcagtgcta aagctagaag actttgtttg ttttgtgtgc tgatattgcc atttgtaaaa
     5881 acaagataaa acacccaaac taaaaaggct atgaaaagca atatgcctaa gttaaaatat
     5941 aattttgtac gcaaactttg cttgtttaac ggcaagtttt ctttatttac acgttctaat
     6001 ttagctttag gtttaaaaaa ggaagtgttg caaattttca ctcctagata aattcctaaa
     6061 accataaaaa cagtaaaaag ccaagtgtgt aaagaaaaat aaggtaaacc tgtaaaaaaa
     6121 ttagctaaat tgcatccaaa tgcaagtctt gctccatatc ctgaaagaat tccacctact
     6181 attgcttgaa aaattcttat attgctagca ggtagacgaa atttgacttt gttagctaaa
     6241 agtgcggcta ctaaacaacc tataaacata cctatgagca taataccatc agttcttgtt
     6301 aaaggggttc catttaaatt ttgcttttgg taataagaat atccatctaa attcatacct
     6361 aaaagctcta aaaactcgcc accccaacgt gtcatttctc cagtaacagc ccaaacgcca
     6421 ccaaaaatcc caaaatacac tgcacttaaa attccaagtg caatcataga acgggaattg
     6481 tcccaaaaat tgattaaata tttttgttta aaagaattca aagaaagatc ctaaaaatgt
     6541 aatcatcaaa acttgatgct aaaaaagagt gagattatag cttaaattta atatgaagtc
     6601 aaaaagaata ttgataaatt tattttgttt ttcattaaaa atcgctataa ttatcacttt
     6661 ggaagattag cgtatctggt gatcgccact gacttcaaat cagatgaaag gatagttgac
     6721 tattctttgg ggagttcgat tctctcatct tctcgccaat attaagtaaa atcaaggaaa
     6781 tttttatgag caaagcagat attattgtcg gcattcaatg gggcgatgaa ggaaaaggta
     6841 aggtagttga taaattatgt gaaaattatg attttgtttg cagaagtgca ggtggacaca
     6901 atgcaggaca tacgatttgg gtaaatggtg taagatatgc gcttcatctt atgccaagtg
     6961 gagttttgca tccaagatgt attaatatta tcggaaatgg agttgtggtt tctcctgaag
     7021 tattgattgc tgaaatggct caatttgaaa atttaaaagg tagattatat atcagcgata
     7081 gagctcattt aaatttaaaa catcattctt taatagacat tgcaaaagaa aagctcaaag
     7141 gcaaaaatgc cataggaaca acaggtaagg gtataggacc ttcttatgca gataagatta
     7201 atcgtacagg acatagagtt ggagagcttt tagaaccaca aagactttgc gaggctttga
     7261 taaaagattt tgaagctaat aaaacttttt ttgaaatgct tgaaattgaa attccaagtg
     7321 ctgaagaatt gcttgctgat ttaaaacgtt ttaatgaaat tttaactcct tatattacag
     7381 atactacaag aatgctttgg aaggctttag atgaagataa aagagtactt ttagaaggag
     7441 ctcagggctc tatgcttgat attgatcatg gaacttatcc ttatgttaca agttcaagta
     7501 ctatttcagc aggcgcttta acaggacttg ggttaaatcc taaagaagcg ggaaatatta
     7561 taggtattgt aaaagcttat gcaacgcgtg tgggaaatgg agcttttcct actgaggata
     7621 agggcgaaga tggagaaaaa attgcgcaaa ttggaaaaga gattggcgta agcacgggac
     7681 gcaaaagacg ctgtggatgg tttgatgcgg ttgctgtaag atatacagca aggcttaatg
     7741 gtcttgatgc tttatctttg atgaagcttg atgttttaga tggttttgaa aagataaaaa
     7801 tttgtcgtgc ttatgaatat aagggtatgg aaatcgacta tataccaagt gatttagaaa
     7861 atgttcaacc tatttatgaa gaaatggatg gttgggataa agtttttggt ataaaagatt
     7921 atgatttatt gccagaaaat gctaaaaaat atatagcaag acttgaagag cttgcagggg
     7981 ttaaggtaaa gtatatttct actagccctg aaagagatga tactatcatc ttatgaaaag
     8041 taaatataat tctgttgtaa aggtaagaaa acaacaactt gataaagcag aatcaaatct
     8101 taatcaagcc aaacaaagac agcttgaaca tgaaaaagct tatgaacttt cacgccaaga
     8161 gtgtgaaagt ttaggcgtat tgccaaaatc aggatctata gcagagttaa gatcgaattt
     8221 aagtatggca caagtaggac gcgaggcttt ggcaagagct aaggagaaag tagaactttc
     8281 taaaaaagaa atgaatcatt atcagttttt atatcaaaaa gcacatttag attatgaaaa
     8341 aatgaaggtt ttagaagccg aggaaattaa acaaaagcaa aaagaacttg ccaaggctga
     8401 agaaaaattt ttagatgaaa ttgcaatcag tcgttttttc aaaggagaaa aagatgatta
     8461 aaaaatttat attgttagtt tttatttcaa gtgtagtttt tggagctgaa caagattgtg
     8521 agcagtattt tgaagctaga aaagctcaaa ttgaattgca aactagagaa tttgatgaag
     8581 caagacaatc tttagaagct tataaagcct cttttgaagc tttgcaaaaa gaaaggcttg
     8641 aaaatttaga aaaaaaagag gctgaggtta atgcaacttt ggcaaaaatt gaagaattaa
     8701 agcttgaaaa cgcaaggctt gtagaagaac aacaaaagat tttaaattca atcaatgata
     8761 aaacacaagg tagggttaaa gaaatttatt cccaaatgaa agatgcagcc attgcagatg
     8821 ttttaagtca aatggatgca gaggatgcaa gcaaaataat gctttctttg gaatcgcgta
     8881 aaatttcagg tgttttatct aaaatggatc caaaaaaagc tagcgagctt actttgcttt
     8941 tgaaaaattt agataataat gctagtaatt aggtgattaa aataatgaaa atttttcatt
     9001 tttaacattc ttttaccaaa aataagctat tatttcaaac attatcaaat aaaaggtttt
     9061 taagatgcgt ataaaattac cacatattcc ttatatcgca aataaaatga tgttagatat
     9121 agctaattct tcttttgtag aaattaaaga tcaattagaa aagcttaagg tatgtataat
     9181 agaagtttta gagaaagata ttctaaatga aagaaaatta gatgaaagag taaaagagct
     9241 tttagagcaa caagaagatg aaatggagct tatgcaagta gatcgtaaaa atatgttttg
     9301 gcttgtgaag aaaaagttag ctcctgaatt taatgtgatt ttagattctg aagatagaca
     9361 taatcatcta gcgcatcaaa ttttagaaga acttgtagag aatgattata ttaattttat
     9421 agtgagtgaa aatagagtta aaaatttaat cttttcaagc atagagtctt atcttaaaat
     9481 ttatgaaaaa cttgaagatg aggtttatga gaaaattagc aattataaaa caaaacctat
     9541 tccaggtagc gaagaatacg atcttatctt tgaaaaactc tatcaagaag agctcagaaa
     9601 aaaaggtatg ttttaatgaa ggcttatatt tatttagaaa atgatatttt tttaagtgct
     9661 aaggcttttg gaaagagcgg tacttttttt ggagagcttg tatttaatac ttctttaaca
     9721 gggtatcaag aaattatttc agatccttct tatgcagggc aatttatcgt attttccatg
     9781 ccagaaattg gtatagtggg aaccaatgaa aatgataatg aaagcaagga aatttttgca
     9841 agtggtgttt taatgcgtga attaagttcc agtttttcaa attttcgcgc taaagaaagt
     9901 ctgcaagatt atcttgaaaa acatggaaaa ataggaattt atgaacttga tacgagatat
     9961 ctagtaaaaa tgataagaaa taatggcaat ttaagagctg taatttcaac tgaaatttca
    10021 aataaagaag atttaaaaat cgccttagaa aaatcagcaa aaattgatga agtaaatttt
    10081 gtaaaagaag ttagcactaa gaaaaattat tctcataaac aaggcgtttg gaacgctagt
    10141 tttcaaaaat ttaatgatgc taaaagaagt gagaaaaaag ttgctgttat agattatggt
    10201 gttaaaacaa atatcttaaa tgaacttgta gaagtaggtt ttgaagtaga agtttatcca
    10261 tataatgtta aagcagatga gttgattact ctgtataaaa aaggtgaaat tcaaggcgtg
    10321 tttctttcta atggtccagg tgagccaagg attttaaaac aagagattgc agagattaaa
    10381 aaacttgcag aagctaaaat tcctatgctt ggaatttgct taggtcacca gcttttaagt
    10441 aatgcttttg gatatgaaac ttataaaatg aaatttggac aacatggagc aaatcatcct
    10501 gtgatcaatc ttgatacaaa aacggtagaa attaccgcac aaaatcataa ttataatgtt
    10561 ccagaagaat tagctcaagt ggctcatatc actcatagaa atttatttgg cgataatgtt
    10621 gaaggagtaa gatataaaga ctatcctatt atttcagtgc aacatcatcc agaaagttct
    10681 tcaggtcctc atgaaagtaa gtatattttt aaagaattta tgaatttgat gtgagtatag
    10741 attttttagc tattatcagc gttgcttttt tatctagttt tggacactgc tattctatgt
    10801 gtggtggttt taatttactt tttataaatt tgaattcaaa aagcaataat ttatttttat
    10861 taacttttat ttataatttg tttagaattt ttgcttatat tgttttaggg ataatttttg
    10921 ggacttttgg gaatatcttg gcaatcaatg ctaaggttca aagtttgtca ttttttattc
    10981 ttggtatatt tatgatgatt ttgggttttg ctcttatttt tagaggcaat atgttatctt
    11041 ttattgaaaa taatgttttt tttgatagtt ttgtaaagaa aattattaaa aaatctaaaa
    11101 attttaaagg attaaaatca gccatatttt taggattttc aaatggtttt gttccttgtg
    11161 gattggtgta tttttttata gccaatgcaa tgagtaagca aaatattttt gaaggtattt
    11221 tggtaatgat gatttttgga atatcaactt tacctgcgat gttatttttt tctaaaattt
    11281 cacagttttt tagtgatttt ttgaaaaatt tatttaatta tttatcgtat ggcgttattg
    11341 tttgttacgg tataaatctt gcctatatag gttttaaggc ttttcaatga aagatttttt
    11401 taaagatcag ttttttaaag ctcttgaaaa aaatacaatt ttttcaagag ctgatgttca
    11461 aggaaattta atttttgtca gtgataaact ttgtcaaata agtggatata gtaaaaaaga
    11521 gcttatagga aaaaaacatt caatatttaa acatccagat gttgaggaat gttatattga
    11581 agaactttta aaaaaacttt catataaaaa accttatcaa gttattttta aaaatattga
    11641 taaattaggc aaaactttct atcttgaaac tttattaatc cccatattgg ataaaaataa
    11701 tgaattaata gaaatagtag cattctctca taatgttagt aattctttta agcttaatga
    11761 agagcttgct ctaaatcacg ctaaattaag agaattaagt attaatcttg aaaatacagc
    11821 taaaaatcac caacaagaat ttatacagtt aggtaaaaaa tttgagaaaa aaatgcaaat
    11881 tgccttggaa aaaaatgaaa aagatattaa aatagcatat gaagagattt tgaaatcttc
    11941 attagaacaa atgattagcg atatagcaca tcaatggaga caaccgttaa atgagctcgg
    12001 tattgccatg tttcaaatga agcaaaatct taaagatgaa aaaggatttg ctgaaattta
    12061 ctcacaatca aaagatatga ttaaaaatat gtcagaaaca attgatgtgt ttagaacttt
    12121 gtttaacaaa ggagtagagc agtgtgtatt tataaaagag actttaaata aagccttgga
    12181 aattgctttt gaaactatag aaaaaaatca tgtaaatatt aatattgttt cgaaaagtga
    12241 ttatgaagtt ttggcatatg agaatggttt aataagagtt tttcttaatt tgattttaaa
    12301 ttcaatagaa gcatttaaaa acaaaaaaag gaaaatcata acaataaatt tttcaaaatt
    12361 tggaaaaaat tatctgaaaa ttacaataaa agataatgct ggtgggattg ataaagaaaa
    12421 tttagataaa atttttcaac cttattttac aacaaaacat cctagtcaag gtataggagt
    12481 aggactttat ataagtagac aaattatcga aagtttccaa ggaaaaataa aagttaaaaa
    12541 tggaaaagac ggggcttgtt ttgagatatt tttaaaacta aaagagaggg tagagtagaa
    12601 atgtcacaag aatgtaaaga attgataata ttagtagttg aagatgaggt taaggctaga
    12661 gaatcaatga ttaatatatt aagcgaacgc tttagtaaag taatcggagc tcaaaatgga
    12721 gatgaggggc ttaaaaaatt taaaaaattt aagccagatt tagttatcac agatattgct
    12781 atgcctatta tggatggact ggatatggca agagagatta aagaaatttc agatgatgtc
    12841 ccaattgttg ttcttagtgc gtattcagag aaagagagac ttttgcgttc tattgatatt
    12901 ggtatagata aatatttgat taaacctgtt gatatagaag agttgtttaa agttttagat
    12961 tatctgatag gtgaaaaaat tgaagcaaat atgcttgtaa aaatttccga agaatatcaa
    13021 tttaacaaaa ctaaacgaac tttaatttac agtggtggag aaattgtttt aactaaaaaa
    13081 gaattggctt ttatttcttt gcttttaaag caacctggag ctttggtttt gcatgaagat
    13141 attaagaaaa atgtttggat aggtgaacat gtgagcgata ctgctgttag aacttttata
    13201 aaaagagtaa gagataaagt gggtgaagat tttataaaaa atgtgccaag tttaggttat
    13261 aagataaata tcaataaata agactgattt agccttaaaa tataaaacat aacaaatgat
    13321 taacaaaatt atcattttta agaaaaaatg tataattaat attctataat attctcttgt
    13381 tatcaaaaat tttaaggaga aagtcgatgc atccaggtaa tgtattaaat tacgactata
    13441 cggttgcaag atattttatg tttgcgacca tattgtttgg cattgttggt atggctatag
    13501 gaactcttat agcttttcaa atggcatatc ctaatttaaa ttatttagca ggagaatatg
    13561 ccactttttc aagacttaga ccacttcata cttcaggtgt gatttttggt tttatgcttt
    13621 cagggatttg ggcaacttgg tattatatag gtcagcgtgt tcttaaagtg agtatggctg
    13681 agtcaagatt tttaatggct gttggtaagt ttcatttttg gctttatatg cttactatgg
    13741 ttttagctgt tatatctttg tttatgggtg tgactacatc taaagaatat gcagagcttg
    13801 agtggccttt agatattctt gttgttcttg tttgggtttt atggggtgta agtatttttg
    13861 gacttattgg aattcgccgt gaaaaaaccc tttatatttc tctatggtat tatatagcta
    13921 catttttagg tatagctatg ctttatcttt ttaacaacat ggaagtacca acttattttg
    13981 ttactggaat gggtaaatgg tggcatagtg tatcaatgta tgcaggaaca aatgatgctt
    14041 tagtacaatg gtggtatgga cataatgctg tggcatttgt atttactgtg ggtattattg
    14101 ctcaaattta ttacttcttg ccaaaagaaa gtggtcagcc gattttctct tataaactct
    14161 ctttatttgc attttggggc ttaatgtttg tttatctttg ggcaggtggt caccatttga
    14221 tttattcaac tgtacctgat tggatgcaaa ctatgggttc ggttttctct gtagtattga
    14281 ttttaccttc ttggggttca gcgattaata tcttgcttac tatgaaaggt gagtggagcc
    14341 agcttcgcga gagtccattg attaaattta tgattttggc atcaactttc tatatgttct
    14401 caacacttga agggccaatt ctttcaatta aatctgttaa tgctttagca cactttacag
    14461 attggattcc aggacatgtt catgatggaa cattaggttg ggtaggattt atgactatgg
    14521 ccgcgcttta tcatatgact cctagagttt tcaaaagaga gctttatagc aaatctttaa
    14581 tggaagctca attttggatc caaaccacag gtatagttct ttattttgct tcaatgtgga
    14641 ttgcgggtat tactcaaggt atgatgtgga gagcgacaga tgagtatggt aacttgcttt
    14701 atagctttat tgatactgtt gtggctattg ttccttatta ttggattaga gcgattggtg
    14761 gattgttgta tcttatcggt ttctttatgt ttacttataa tatttacaaa acaattgctt
    14821 gtggaagagt gcttgataaa gaaccaaaaa gcgcttcgcc tatggcagca taaaaaggag
    14881 agaaaatgtt tagttggtta gaaaaaaatc cattcttttt tgctgtagct gtttttgtag
    14941 tgattgctta tgcaggcata gttgaagttt taccaaattt tgcagaaaat gcaagaccaa
    15001 ttgaaggtaa aaaaccttat acggttttac aacttgcagg gcgtgcagta tatattaaag
    15061 atagttgtaa tgcttgtcat tcacagctta ttcgtccatt taaatcagaa acagatcgtt
    15121 atggtatgta ttctgtaagt ggtgaatttg cttatgatag accttttctt tggggctcaa
    15181 aaagaacagg acctgatctt gctcgtgtag gaaattatag aacggctgat tggcatgaaa
    15241 atcatatgtg ggatcctact tctgttgttc cagattctat tatgccttca tataagcata
    15301 tgtttaaaaa taatgcagat attgaaactg cttatgctga ggctttaact gtgaaaaaag
    15361 ttttcaatgt tccttatgat gcagaaaatg gaacaaaact tggttcttgg gaggatgcac
    15421 aagctgaagt aaaagctgaa gctcaggcta tagttgatca aatgaaaaat caagaagtaa
    15481 aagatgcttt tgctaaaggt gaaatcaaag aaatagttgc tttgatcgct tatttaaata
    15541 gtttaaagta agatgatgga acatttatca atagtttttg atgtgattaa aaatttaatc
    15601 acatttgatt tagcaacagt tcaaaaacat gagtgggaga ttttccaagg ttatggtttt
    15661 tttgcactcg tgatgttttt gtcaatagta ttatatgcgt atttgtatca tttatataga
    15721 acagaaaaaa aaggcgagag aaattatgaa aattatgcaa accttgcctt aaaagatgat
    15781 attgatgata gtgtattaga aagtaaaagg agtgcttaat gcaatggtta aatttagaag
    15841 ataatgttaa tctcttatct ttaattggag ctattcttat cattttaatc acactggtta
    15901 ttgtgggtag aatgtttaag caaatgaaag aaaaaaaagg cgagtcagag cttagtgaac
    15961 atagttggga tggaatagga gagtataaaa atgctgttcc tactggttgg gctgtggtat
    16021 ttttcctgac tattgtttgg gctatttggt attttctatg gggatatcct ttaaattctt
    16081 tttcaagtat aggtcaatat aatgaagaag tagcaactca taatacaaaa tttgaagaaa
    16141 aatttaaaaa tttatctcct gaagataaaa tagcaatggg tcaaaatatc tttttagttc
    16201 agtgttcggc ttgtcatgga attacaggag atggtatcaa tggtaaagct caaaatttaa
    16261 atatttgggg tagtgaagaa ggtataatca atgtaattaa acatggttca aaaggtatga
    16321 attttccagg tggagaaatg cttggtgctg ctgatttagg tgtagcagaa gaagatatcc
    16381 ctgctattgc tgcttatgta gcaaaagatc tttcagctat taagaaaact gcaaatgaaa
    16441 atttagtagc aaaaggtaaa gaagcttatg caacttgtgc agcatgccat ggagaagatg
    16501 gaaaaggtca agatggaatg ttcccagatc ttacaaaata cggttctgca gcttttgtag
    16561 tagatgtttt acatagtggt aaggctggtt ttataggaac aatgccgagt tttccaacac
    16621 ttaatgatat tcaaaaagaa gctgttggcg agtatgtaat ttctctttca aggggtgaat
    16681 gatggaaaat aataatagat gcgtgttttc tctttcaggt gttacaggta tgttaattgc
    16741 tacggttttg ttgcttgcta tcttagcagt tttaactatt tggggtctta aagctcagca
    16801 agaagtgatg caaaagccat atagtcttaa agatgtacaa agtgtaaaga tgtttggttc
    16861 aaaagaacaa gatcatagaa gtataaagga agcacaatga gtaaggcttt ggaatattta
    16921 attgttattg gtttagttgt tgctgctgca atcaccgctt ggtcggtttt gaccgtaaat
    16981 catcttcata taggatgaaa aaaatattac aagatggctt ttttttagct atcttcttct
    17041 ttgttttatt gccttctagg gtttttgctc ttgatgctgt gctttttaat gaaaatattt
    17101 taagtcaaaa agtaagtaac gagattaatc ttataggaaa agagctttac caaaaaagta
    17161 atatttttat cggcgttatg gttggtgata aaactgaaat tgaaacttta ttaaataaac
    17221 aaaaagaact tcctcaatct tatatattgc ttcttttgtc aaaaaattct cacaaagttg
    17281 atatagtggg ctcaaaaggt gctttagctt tgattgataa agaagctgtg cttagtcctt
    17341 atcctggaac aggatctatt ttgccgatat tagctacaaa taaaggtgat atttataatg
    17401 ctgctatact taatggttat gcagatattg tagatcgtgt ggcaaaatcc ttgggattac
    17461 aattagaaca ttctataggt aatgcaaatc gtgatactat caatatttta agaatactta
    17521 tctatggatt tatttgcttt gcattgttat actatgcaca aagaagaata aagaggaaaa
    17581 aaaatgttag aaactaaaaa aagtttttgg ccttatggta ttttgctttc acttttggct
    17641 ataattattg cttgtattgt aacgattttt atagcaagtc accatcctgt gtatgaggat
    17701 gatttttatt ttgactctta tcaaaatgtt gaaaataatt acaatcaaat acaaaaacaa
    17761 caagtaaatt ttgataaatt ttttaaagta aattttcaaa atgataaaat cacttttata
    17821 ggtaaaagaa aaattcctag ttatgaagtg gatcaaaatt cctatgttgc aaattttaaa
    17881 atttctgcat tgcaaaatat aaattctaat gatttaaaag ttcaagttct tcttacaaga
    17941 ccattcacta aaaattttga tcaaaagtta gaaggacaag ttaaaaatgg aattttaagt
    18001 atcgctttac ctaaattaga taaaggtaga tgggagctta agctaaagtt ttatgcaaat
    18061 caagaaacag tgggtttttt tagctacgaa ttaaatgctc aatgaaatta agaattttta
    18121 gctcttcaag gcaaattaga gaatattata atcaaaaaaa acagcaaaat gctttattag
    18181 atagtgctat tcatataggt gaatttttag ataaagtttg tttgagcaat tttcataaag
    18241 caagttctta tgaaagtttg cttttaatgc aagaagcttg tctaaaaagt aaggatttag
    18301 aaaaaaaact aggaatttcg gtagaatttt ttgctttttt gaaaaataac gaatatcttt
    18361 tttctttttt taaagaactg agtttggaaa aaaaaagcat agaagatctt aaaaacaatg
    18421 attattatgc cacctataat gaacatttgg aaattttaga tgaggtatat aagaattatc
    18481 ttgctttgct tgaaaagaat tctttttatg atgatctttc tttacctaaa aattacactc
    18541 ttaataaaga ttttttagat gagtatgaag ctatagttta tgatttgcaa ggttttttaa
    18601 gtaaatttga agaaaattta ttaagtgaaa tttctcagat taaagaagtg gttttaagtt
    18661 ttaaaacgag taaatttaat cttgaatatc ttttaaaact tgatttttta aaaatatttg
    18721 atttaaaaat aaacactcat tatgaaatca atctttcaaa acaagagatc ttaaaagaag
    18781 aaatttttaa aacaaaaaat tcaaaaatga aactcaaatc ttttgaatta agggctttgc
    18841 aatgtgcttt tgttatggat gaaatttcac attttgtacg caaaggttta aagcctgaaa
    18901 atattgcagt tataactcca gatgaaagtt tttgtgagtt tttaagactt tttgataaag
    18961 acaatatgct taactttgca agtggaatta gtattaaaga gagtttgttt tatcaaaaat
    19021 ttcaagcact ttatgaaagt gctagtagtg cttcttttgt ctataaaaat caagaggatt
    19081 attttgaaga cacgcagatg atttttgatt atcacaatac gcttttacat tctttaaaac
    19141 ttgattttat agagtttaaa aagtattttg atgagaaatg tgattttgaa tattttgaaa
    19201 aattacttgc tttgttttta gaaaatgaaa agcaagagct tatttatttg atacgaaaag
    19261 aactttattt tattaaagat ttattgaaaa atcagtcttt aactcttaaa gagttgatcc
    19321 atcttttttt catgcaaatt tcacaacttt cccttagtga tgtaggtgga ggtaaggtta
    19381 cggtaatggg acttttagaa agtcgtgggc tttgttttga tggagtgatt ttggttgatt
    19441 ttaatgaaga atttattcct aaaagaagtg ttaatgagct ttttttaaac aatgaagtgc
    19501 gtaaaaaagc aggattgatt agctatgata gaagagaaaa tttacaaaga ttttattatg
    19561 aaagcttgat gaagaatgct ttagaagtaa gtatttgctt tgtggaaaat gaagaaaaaa
    19621 gcaaatcacg ttttttagat gaacttgatt ttgacttttt ttatgaaact catatccacc
    19681 aaaaagctta tcttaatgct ttaaaattag actatgaagg cataaaacct aatctaactc
    19741 ctataaaagc tcctatttta aagcataatc ctttcgagtt tccgctttct tttagtcgtt
    19801 ttaatttatt ggaaaatcaa aaaagaactt attattatcg ttatatttta aatttagcag
    19861 aacctagggt tttaagcgag gaaagcaaag cgaaaaatca aggaaatttt atccataaaa
    19921 tgcttgaaat ttattataaa aattatgcaa ataatgattt tgatataaaa gtttttgcaa
    19981 atttattgga taaagaatat caaaaataca atatcagtga acttgatctt gaagtattta
    20041 aattaaaatt tatacaattt gctaaaaatg aaaaagagca tttttcaaaa ggcttttatg
    20101 tcgcacatac agagcttgag ttaaacaata ttttaaagct cggaacagat agtataaaac
    20161 ttaagggtac tatagatcgt atcgatagtt caaaagaagg taatttgatt attgattata
    20221 aaagtggaaa agtgccaagt aattcttatc aacttgcttt ttaccaagct ttatatgatg
    20281 aaaatgcaag cgtgggtttt tatgatttaa atagtatgca aatattgcat caaaaagcca
    20341 aaagtttaga tgagctaaga gaaagactta aagatttagt tcttatgagt aaggaagaaa
    20401 tagagtttga aaatgaacaa gatgagtatt gtccttataa actcatttat aaaaaggaat
    20461 taaaatgagt caatttgagc cttttttggc attagaagcg agtgcaggaa gcggaaaaac
    20521 ctttgccttg agtgtgcgtt ttgtagcact tattttaaaa ggagctagga ttaatgaaat
    20581 tttagcttta acttttacca aaaaagctgc taatgaaatg caaaaaagaa ttattgagac
    20641 ttttttaaat ttagaaaaag aaaataaaac cagtgaatgc aatgaacttt gcaagctttt
    20701 aggtaaagat aaagaagagc ttatttcttt aagagatgct aaaaaagaag aatttttaag
    20761 aacagagtta aaaatcagta cttttgatgc ttttttcgga aaaattttgc gtgtttttgc
    20821 tttaaatttg ggcttaagta gtgattttac aatgagtgaa gagaggcttg atgtaagaga
    20881 gattttttta aaacttctta aaaaagatga attaaaagat ttggcttatt atattaattt
    20941 agttgatgag aaagaaaatt tttttaacga gcttgaaaaa ttttatgaga atgcttattt
    21001 tcaaaatcgt cctaaaattc taaatccaac taaagcttat atcaataaag cttatagtga
    21061 gttaagaagt tattgtttgg gtcttactca tgtaaaaaat tataaaaatt tgtgtgacaa
    21121 ttttaaaagt gaagttttag atttatctgt atttatgcaa tcaagtttta tgacaaaatt
    21181 tgaaagtaca aaatatttgc aagatttaga aagcactaac ttgcatttta gtgcaaaaag
    21241 aatggagctt ataaatgctt taaatactta tgctatagag cttgaaaatt ataaaattgc
    21301 taatttaatg aatcttttaa atcattatag tgaagctaaa aatatatttc ataaagataa
    21361 aaatacctta aatttccaag atgtgagtaa aaaagtttat gagctaataa ctagtgaatt
    21421 taaggatatg atttattttc gtttagatgg ttttatttcg catttgctta ttgatgaatt
    21481 tcaagataca agcgtgatcc aatatcaaat tttacgccct ttgattactg agcttgtttc
    21541 aggagaagga gttaaaaaaa atcgcacttt tttttatgta ggagataaaa aacaaagtat
    21601 ttatcgcttt cgtaaaggaa aaaaagaatt atttgatttg ttaaaacaag aatttagtca
    21661 aattaaaagt gataatttaa atactaatta tcgttctaaa gagcttttgg ttgattttgt
    21721 taatgaaact tttaaagaaa aaatcaaaga ttataaagaa caatttgcct tagaaagtaa
    21781 aaaaggcggt tttgtgcgta ttgtggagtc taaggaacaa aaggttaaaa accaagccca
    21841 aaaaattaag gaaaagactt tagaaacttt atttgagcaa attaattttt taagatctaa
    21901 aaatatttct tatgatgata tttgtatttt gtgttggaaa aatagcgatg cagatatggt
    21961 tttggatttt ttaagagagc aaaatattcc tgcatttact caaagtaatg ttttgcttga
    22021 aaataaagca agtgtaagac ttgttttaga atatgctaaa tattgtattt ttggtgatga
    22081 gttttacttg gtatttttaa aggaactttt aggttttgag ccgagaaaaa ttacccttga
    22141 tttttcaaaa aatgctatgg aaaatgtact ttttttaata aaagaattaa aacttgattt
    22201 aaatgatatc gctttaatac aatttatcga atatgctaaa actaaggaga attttttaaa
    22261 gcttttattt gagccttgtg ctttgaaaat agtaagcgaa caaaatatgg gaattagtat
    22321 tatgagtgtg cataaatcta agggtttgga atttgatcat gtgattttac ttgatagttt
    22381 atctaaaaac aattcaaaca atgaagatat catgcttgaa tatgatatca atcaaggttg
    22441 gcaactccat attaaagata aaattcgaga gcttactaaa gagcctattt atactctttt
    22501 taaagaaaat attacaagag caaattatga agatgatatt aataaacttt atgtggcttt
    22561 tacaagagct aaggaaagtt tgatcatcat aaaaagaaat gaagaaagtg taaatggaaa
    22621 ttatccaagt tattttaagg ggggattttt aaatatacat tctcaagaga gaggtttttt
    22681 agaaagcaaa gaacaaattt taagcgttaa aaaagaaagc attcaaactt tgcaaaaatt
    22741 tgaaaaaatt accttgcaag aaattcaaag cgaagaaagg cttgatagta aagaactata
    22801 ttttggaaat gcttttcact tttttatgca aaatttaaaa cttcctaagg gtgaaaattt
    22861 tcaaatactt actcaaagat gcaagagtaa atttagacat tttttagatg agagtgattt
    22921 tgaaaagctt tttaaaagaa ttgaaatttt acttaaaaat attcaatttc aaaatttgat
    22981 tggtgatgga aagcttttaa aagaacaagc tttgagtttt aatggagaaa ttaaacaatt
    23041 agacttgctt gctttaaaag atgaagaagt ttttataatt gattataaaa caggtcttgc
    23101 tatgcaagat aaacataaag agcaggtagg aacttataag attgccatta gtgaaatttt
    23161 gcaaaaagat aaagtgcgtg cttttatagt ttattgtttg gaaaatgaaa ttcaaatttt
    23221 ggaaatataa actttatttt tacttaaatt aagtaaaaat taatattatt ttttatacaa
    23281 tcacatttta aatttttggc aaaggtaaaa attatgacaa agataacaaa gccaaacgaa
    23341 gtaaaacgag aatggattgt tttagacgca gaaggcaaac actttggtcg tcttttaact
    23401 gaagtagcaa caattttgag aggtaaaaac aaaccttgct ttactccaaa tgttgattgt
    23461 ggtgattatg taattatcat caatgcttca aaagctgtat ttacaggtgc taataaagca
    23521 gaagataagc tttatcatag acattcagga tattttggaa gtgtaaaaag cgaaaaattt
    23581 ggtgatttac ttgaaaaaaa tcctgcaaaa ttatataaat tagcagttag aggtatgctt
    23641 cctaaaacaa atttgggcag agctatgctt aaaaaattaa aaatctatgc gggtagtgag
    23701 cacccacaca ctgcacaaat tgctaaagaa ggaaaataat catggcaaca acatacgcaa
    23761 caggtaagag aaaaactgct atcgcaaagg tatgggtaaa accaggtagt ggtaaaatta
    23821 gtgttaatgg tgttgattta aacacttggc ttggtggaca cgaggcgatt aagcttaaag
    23881 tggttcaacc tttacttgtg actaaacaag aaacttcaat ggatattaaa gcaaccactt
    23941 taggcggggg ctatagtgct caagctgaag ctttaagaca tggaatttca agagctttag
    24001 cagctatgga tgatgatttt agagccttat taaaacctaa aggacttctt actagagata
    24061 gtagaactgt tgagcgtaaa aaatatggac gccgcaaagc aagaagaagc ccacaattct
    24121 ctaaacgtta atatttttgg tgggattttc ccacctttct acaatttttt ataaaactca
    24181 tccttttttc tatcatttat gttataattg caaaatttaa atttttattt tataacacaa
    24241 tgaaaggttt tttctatgaa aaaaatattc ttatgtttag gtttggcaag tgttttattt
    24301 ggtgctgata acaatgtaaa atttgaaatc actccaactt taaactataa ttactttgaa
    24361 ggtaatttag atatggataa tcgttatgca ccaggtgtta gacttggtta tcattttgac
    24421 gatttttggc ttgatcaatt agaatttggg ttagagcatt attctgatgt taaatataca
    24481 aatacaaata aaactacaga tattacaaga acttatttga gtgctattaa aggtattgat
    24541 gtaggtgaga aattttattt ctatggttta gcaggtggag gatatgagga tttttcaaat
    24601 gctgcttatg ataataaaag cggtggattt ggacattatg gcacgggtgt aaaattctgt
    24661 cttagtgatt ctttggcttt aagacttgaa actagagatc aaattaattt taatcatgca
    24721 aaccataatt gggtttcaac tttaggtatt agttttggtt ttggtggcaa aaaggaaaaa
    24781 gctgtagaag aagttgctga tactcgtcca gctccacaag caaaatgtcc tgttgaacca
    24841 agagaaggtg ctttgttaga tgaaaatggt tgcgaaaaaa ctatttcttt ggaaggtcat
    24901 tttggttttg ataaaactac tataaatcca acttttcaag aaaaaatcaa agaaattgca
    24961 aaagttttag atgaaaatga aagatatgat actattcttg aaggacatac agataatatt
    25021 ggttcaagag cttataatca aaagctttct gaaagacgtg ctaaaagtgt tgctaatgaa
    25081 cttgaaaaat atggtgtaga aaaaagtcgc atcaaaacag taggttatgg tcaagataat
    25141 cctcgctcaa gcaatgacac taaagaaggt agagcggata atagaagagt ggatgctaaa
    25201 tttattttaa gataatgaat aaaactattt tatttgattt agatggcact ttaattgatt
    25261 ctactgatgc tattttaaat tctttccaag gagcttttaa agcccttgga ttaacttcta
    25321 aaaataatga agaaatcaaa aatctcatag gttatccttt agagcaaatg tttagaatgc
    25381 tttatccaga taaagtaaat ttaagtaaag aatttgtatt aacttatcgt gaaatttata
    25441 cacaaattta tttagaacaa accactcttt tgcctaaagc aaaagaggca ttagaacttg
    25501 gaagcgaaat tgcagatctt ggtatagtta caacaaaagg tggtaaattt actccgattt
    25561 tacttgatta tttgggagtt aaaaaattct ttaaaacttt aattactctt gaagatgtca
    25621 caaatccaaa gccaagttcc gaacctataa ttttagcctt aaaaagactc aataaaactc
    25681 aagaaaatgc ctatatgata ggcgatacaa tactagatat tcaagctgca atttctgcta
    25741 atatcactcc tttggcctta acttgtggct atggtaatga aaatgaatta aaatcccgtt
    25801 ctatggtatt tttaaatgca tatgaggctg ttaattatat agctagatta aactaatttc
    25861 aagttttcgt taaacgcctt ttaagagaat ttatagtaaa ttgatagcta aaaaatataa
    25921 aaattatcaa tataaaggaa ggtctcaatg ggtaaaatta tgaaaactat ggacggaaat
    25981 gaggctgctg catacgctgc gtatgctttt actgaagttg ctggaattta tcctattaca
    26041 cctagttctc ctatggctga ttataccgat atgtgggcag ctgcaggaaa aaaaaatctt
    26101 tttggagttc ctgtaaaaat cgtagaaatg caaagtgaag caggagctgc aggtagtgtg
    26161 catggatctt tacaagctgg ggctttgact acaacttata cggcttctca aggattactc
    26221 cttaaaattc caaatatgta taaaatagca ggtcaattac tcccctgtgt aatccatgta
    26281 gcagcgcgtt ctttggctgc tcaagctttg tctatctttg gtgatcatca agatatttat
    26341 gcagcaagac aaattggttt tgctatgctt tgttcgcatt ctgtgcaaga aaccatggac
    26401 ttagctggtg tagcacattt agctgcaatt aagggaagag tgccattttt acattttttt
    26461 gatggtttta gaacaagcca tgaaattcaa aaagttgaag taatggatta tgcgcatttt
    26521 gatagattat tagatagaga agctttgctt gaatttagaa ataatgcttt aaatccagaa
    26581 aatccaaaaa cacgtggaac agcacaaaat gatgatattt attttcaaac tagagaagta
    26641 agcaatcgtt tttacgatgc tttacctgat gttgttaatg aatatatgca agaaatttca
    26701 aaaattacag gtagagaata caaaccattt acttattatg gccacaaaga gccagagtgt
    26761 gtgattgttg ctatgggttc tgtaactcaa gcacttgaag aagtggtgga ctatcttaat
    26821 gccaagggtg aaaaggtagg gattttaaaa gtttatcttt atcgcccatt tagtttaaaa
    26881 tatttctttg atgttatgcc aaaatcagtg aaaaaaatcg cggttttaga tagaaccaaa
    26941 gaaccaggaa gtctcggaga accactttat ctcgatgtaa aatcagcttt ctatggaaga
    27001 gaaaatgctc ctgttatagt gggtggaaga tacggacttt cttcaaagga tgttgatcct
    27061 gctcaaatga tagcagtatt tgaaaatctt aaacttgata atccaaaaga tggctttact
    27121 gtaggtataa ttgatgatgt aactcatact tcactgagta ctggagagaa aatttcactt
    27181 ggagatgaaa gtacgatcga atgtttattt tacggacttg gtgctgatgg aactgtgggc
    27241 gcaaataaaa actcgattaa aatcatcgga gataaaacgg atttttacgc tcaagcttat
    27301 tttgcttatg attctaaaaa atcagggggt tatacaagaa gccatttaag attttctaaa
    27361 aaacctatcc gttcaactta tcttgtttca actccgcatt ttatcgcttg ttcggtagcg
    27421 gcttatttgg aaatttatga tgttttagca ggaattcgca aaggaggaac tttcctttta
    27481 aatagtattt ggaatgctga agaaaccata agacaacttc cagatgcagt aaagaaaact
    27541 ttagctgaaa aagaagtaaa tttttatatc atcaatgcaa ctaaactagc tcgtgatata
    27601 ggtttgggaa atcgtacaaa taccattatg caatcagcct ttttcaaact tgcaaaaatc
    27661 attccttatg aagacgcaca aaaatacatg aaagagcttg cgtataaatc ttatagtaaa
    27721 aaaggcgatg ctattgtaga aatgaattac aaggctattg atgtgggtgc tgatggactt
    27781 gtaaaagttg aagtggatcc aaattggaaa aatttagagc ttaaagaaaa agaacaaacc
    27841 aatgcctata aaggtactga atttgttgaa aaaatcgtaa aacctatgaa tgcggctaag
    27901 ggtgatgatt tacctgtttc agccttttta ggttatgaag atggaagttt tgaacacggc
    27961 acaaccgaat acgaaaaacg cggtgttggg gttatggtac caagatggat agaggcaaat
    28021 tgtatccaat gtaatcaatg tgcttcagtt tgtccgcatg ctgttatcag gccatttttg
    28081 atcaatgatg aagaaatggc aaatgcacct cgcggtgtaa aagatcatgc tttagaagct
    28141 aaaggaacca aaggagaaaa attaagcttt aaaattcaag tttctccact tgattgcaca
    28201 ggctgtgagc tttgtgttca tgagtgtcct actaaagaaa aatctttggt tatggtacca
    28261 cttcaagaag agatggattt tggtgagcaa gaaaatgcgg attatttatt taaagaaatc
    28321 acatacaaag atgatatttt aaataaagaa actacaaaag gagcgcaatt tgcccaacct
    28381 ttatttgaat tccatggagc ttgtcctgga tgtggagaaa ctccttatat tactttaatt
    28441 acaagattgt tcggtgaaag aatgattgtg gctaatgcga caggttgtag ttctatttat
    28501 gggggttcag ctccatcaac tccttataga aaaagtgtga aaaatggaca cggtcctgct
    28561 tggggaaatt cactttttga agacaatgct gagtttggtt tgggtatgaa aattgcaact
    28621 gaaaatacaa gacaccgcat tgaacatatc atgaatgaaa gtatgcaaga agttccaaat
    28681 gctttatcag ctctttttaa agattggatt gcaaataaag acaatggtgc tatgtctgtg
    28741 gaaattaaag ataaaatgat ccctatttta gagcaaaata aaaatattaa agccgtacaa
    28801 gatatattag agcttaaaca gtatttaagt aaaaaatctc actggatttt tggtggtgat
    28861 ggttgggctt atgatatagg ctatggcgga cttgatcatg ttttagcaag tggagaaaat
    28921 gtaaatattt tagtgcttga tacagaagtt tattctaata caggcggtca aagttcaaaa
    28981 tcttctagaa caggagctgt agcacagttt gcagcagcag gcaaacctat acagaaaaaa
    29041 gatctaggtc aaattgctat gacttatggt tatatttttg tagcacaagt aaattcaacg
    29101 gcaaattata ctcatcttat caaagctatc actgcagctg aggcctatga tggaccatct
    29161 ttggtgattt gttattctcc ttgtatagct catggtatta aaggtgggct gggttactca
    29221 ggagagcaag gtgagcttgc tacaaaatgt ggttattggc cactttatac ctttgatcct
    29281 cgtttagaag agcaaggaaa aaatccttta actctaacag gaaaagaacc tgattgggat
    29341 ttatatgagc aatttttgat gaatgaagtg cgttataatt cacttaaaaa agcaaatcct
    29401 gaacacgctg ctgagctttt tgaacgcaat aaaaaagacg ctcaacgtcg ctatagacag
    29461 cttaagcgta tcgctatggc tgattatagc aatgaggtcg aaagctgata aaatatattt
    29521 ttagtgctac attgtgtttt agcactttgt ttgcacaaga taattttgaa gagtatttta
    29581 aacttataga taaagaaaat cgtataaatt ttaatactct tcaaaaccca tttgtgaatc
    29641 ctacttttga aaaattaaga catattaaaa ttactgcaat tatgcttgat aaagtaaaaa
    29701 tttatgatcg atggtataaa aaaggtgata tgattgatga tgctataata tatgaaataa
    29761 atactaaaga gattaaattc caatatgata atttagaaat tgcaatccaa ataaataaaa
    29821 atgataagat taatattaat taacattctt ttttgccatt atctttatgc tttagattgt
    29881 caaaagcgtc tttttgatat cagtattaat gaaaaattaa gcatacaaga aagtcttgat
    29941 gagcttgcaa aatattgttc ttttagtatt attgttaaag ataaaattgc caaagaaaaa
    30001 ttagaaatat tgcaaaactc tgtcaatatt catcaaatga gtttagacga aatttttaat
    30061 ttttttatca aagagcatga tcttagctat gattttgatg gtaaaatttt aagaatttca
    30121 ggcattaata cgaagatttt taagataagt tatatcactt ctatcagaga aggacaaagc
    30181 ataactaaag cgtctgtaga cgctaaacca aggcaaagtg aatatagcgg tagttttgat
    30241 gacgcagagg acaatatgat taaaagtatg gaaaaatttg atttttggca aaatatagaa
    30301 aaagagatta ttgtattatt aaaaaattct catgaagatt atgaggctaa aactcccatt
    30361 ataaatccca atgcaggtct tattatagta actggaacaa attctcagtt aaaaagtgtg
    30421 aaaaattatt tgcaaaaact agaaaatcgt cttaaaaaac aagttattat cgatgttagc
    30481 atacttgctg tgagtttaaa tgaaaaccat tctagtggga ttaattggca aaattttaat
    30541 ataggtttaa attcgcaagt aaataatgaa aattctttta ttcagtttca aaatgggcaa
    30601 ggttttgtta agaatttggg tttaagggcg aatttaaatt ttgattctat tattaacttt
    30661 ctttctcaaa atggaaaaac tagcgtgctt tctaatccaa agcttatggc tttaaataac
    30721 caacaagcca ttatttctgt aggcgatact ataaattatc aagttaaaga aagttctaaa
    30781 ggcactgaaa atgggactac tgttagtgaa agttataaca attattctat ttttgtaggc
    30841 attttactca atatcttgcc tgaaatttct gatgatggaa aaataatgct caggattaat
    30901 ccaagcttaa gtgattttaa gtatccagaa gataataaac gacaaaaaga accaagaact
    30961 attgctcctg ataccataca aaaaaagctt tctagtgttg tgcaagtaga gaataatcaa
    31021 actttaattt taggtggatt gatttctcac gataaatcta atgagaaaaa ttctatcaat
    31081 tttctatcaa aaattccaat cctaggttct ttgtttaaag gagaagtttt aaattctaaa
    31141 gcaaccgaaa ttgtttttat tatcactcca agtatagtag atagtgtaaa tgctccaagt
    31201 cttaaagatc taggatttaa gcattatgag taaaattatt ccatttagag aagaaatttt
    31261 tcatcaaatc aatcaaattt tagaaagcca aaaagctttt atttttttat ggggaaaaag
    31321 tggtagtggt aaaagtgtat tgttgcaaag attagcaaaa aaatataatg ttgattttat
    31381 taatgaaaat tttaaagatc agagtttctt aaaagaaaaa attgagtttt tgatttcaca
    31441 aggtcagagt ttaatcattc ttgatgaagt gggaatgtat gattatgcaa tgctagaaag
    31501 catcaggatt tatagtgatt ctataagttt tgttttaagt tctcataaaa agttaaatat
    31561 acttaaaaaa gagcatttta aaagtcgttt aagtgcttgt tttaaattaa aaaatattag
    31621 tcttttagaa cttgatgatt atattaaatt gaaatttgga atgaattttt caaataaatg
    31681 tcttaagttt ttacaaaaaa tttctcaagg aaatttaaga tatattgata aaactttaaa
    31741 aagtttttat gagataaata gtttttttga taaaaacaaa agtcaagagt atattttaaa
    31801 gcttagtgct ttagagaatg gcttattaag gtaagatatg caagaaagaa ttaaagagct
    31861 tgagcttagg tataaatact ttttacttaa aaaatattta aaatatttat tattaattat
    31921 tctaatatca gtaatagcat tttgtttttt tgtgttaatg caaaaatata ataagcaaaa
    31981 aaatatttat ttgcaggcta ttgaacataa aaagcatttg gagcaaaaga ttcttcaagc
    32041 gcaaatttta caagaaaaaa ataagatttc tagggaaaag ttatataaag aactagaaga
    32101 agttaaagcg gtgcaggaaa atacacatat tagcaagata gaaattgatt ctaaaatttt
    32161 aaatatttct gatttaaaaa aatcttttta tcaaaatcca agctatgaaa aggcattaaa
    32221 tttagctaag aagtattttg atattaaagc ttatcaaaag acaatatttt gggctttaaa
    32281 agccaatgaa cttgacaagc aaaaacaaga ttcttggctg atttttgctc aggctaaaag
    32341 agctttaggc gaagaaaaag aagctcaaag tgctttagat gcttatataa attattatgg
    32401 tttaatggaa ttagatggaa agtagaatgg ataaaatttt tcaagcttat attgataatg
    32461 aaataagtct tgatgaaatt tgcactaaat ttaatatcac ttcttgggat ttttttaaca
    32521 aattagcaaa tttttgtaat ttacattttg ttgatttaga tgaagataat gattttattt
    32581 atgaaggtat acctttttct ttacttttaa aatttaaatt tctgcttatt aaaaacaatg
    32641 acggctttat gattattaga tccaaacctt gttctttaga gcttttagag caagttaaga
    32701 cttttatgat ttgtgaaaaa atcgacactg caattgccga tgaattaaag atagctaaaa
    32761 ttttaaatca aattcgcatt caagaggaga ttaaaagatt aagcattaag cttagacttg
    32821 aatggcaaga aaatcacaaa agagatgatc aaagttgcat cagtcaaatt tttgattttt
    32881 tattacatga aattttatct tttcatgcga gtgatattca tatagaagca agaaatgatg
    32941 atgctttgat taggtttagg gttgatggaa ttttgcgtga atttgctatt tttgagaagg
    33001 atatttatga agctttggtt tttcatgtca aatttttagc ttgtttgaat ttagctgaat
    33061 caagaaaaac acaagatgga agttttgaat tagattttga aaatgaaaga tatgattttc
    33121 gtgtttcatg tttgcctttg atttatggcg aaagtgttgt tataagaatt ttaaaacatg
    33181 ataaagaaat tttggatttg tataaactaa atcttggaaa taaaaattta gaaattttaa
    33241 aaaagatttt acatcgtccc aatggaatga ttttattaac cggtcctaca ggtagtggta
    33301 aaagcacaac tttatacgcg tgtttaaatg agttgaaaag tattgaaaaa aagattattt
    33361 ccgcagaaga tcctatagaa tataaaattc ctttagtgca gcaaattttg ctcaattcaa
    33421 aagttggagt cgagtttaat agtgttttaa gagcaatttt aaggcaagat cctgatatta
    33481 tcatgatagg agaaattcgc gatgaagaaa gtttagatat tgcacttaaa gcttctttaa
    33541 caggtcattt gcttttaagc accttgcata ctaatgatgc tcttagtacc attgataggc
    33601 ttttggatat gcaagcaaaa agttacttga tagcatcggc tttgagtctt gttatagcac
    33661 agcgtttggt tagaaaactt tgtccttggt gtaagcaaaa aagcaaaaaa cattatattg
    33721 aatttgaagg tgaatttttt gaaccaaaag gatgtgagcg ttgtcatcat agtggatttt
    33781 ttggcagaga attaatcgct gagtgcttag agatcaatga agatttatct tgtgcaatta
    33841 gggaaaatca agataaaacg attttaatgg agcttgcaaa aaaatatggc tttcaaacta
    33901 tgtttgaaca aggtttaaaa aaagccaaag aaggtcttac aagtatagat gagcttttaa
    33961 gggttgtaag atgaaatttt atgaagtgga atttcttaaa aacaatcaaa attatacaaa
    34021 aactataaaa gctgaaaatt taaatacagc acaagcaaaa gccttatcaa agaattggaa
    34081 aatcattgat ataaaagaaa ttcaaaaatc taattttcag agattaaaag atgaaaattt
    34141 tatactcttt tttaaagagc tagctttgtt gtgtgaagtt ggattaagtg ttcaagaagc
    34201 gattagagaa ttatatctta tgcactcttg caagattatg aaaaaaatat tagacaattt
    34261 aattttagcc caaaatctaa atcaagcttt tgaaaatgct aattttggat taaatcgtgc
    34321 ggagttagct ttgattaaaa cggctgaaaa gacaggaaaa atcagtgaag tgtttagtca
    34381 aatttctaaa cttcgagaaa aaagcttaga gagtcaaaaa caattaaaaa aggcttttag
    34441 atatcctact ttggtttttt taagtattat cggagcattt ttgtttttaa tgctttttgt
    34501 agtgcctaat tttaaagatt tatttgaaaa tttaggcgcg agtttgcctt ttatcacgca
    34561 tgtaatgtta gaaatttata attttttaga tgactatgga attttttgca tatttttgtt
    34621 tgttattttt attgttatgc ttattttagc ttataaaaat tttcattctt ttgctttttc
    34681 ttgcg
//
LOCUS       DARGBD010000007        31522 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.007, whole genome shotgun sequence.
ACCESSION   DARGBD010000007 DARGBD010000000
VERSION     DARGBD010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 31522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31522
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.007"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            59..826
                     /locus_tag="SFZ04_000268"
     CDS             59..826
                     /locus_tag="SFZ04_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HEG8064580.1"
                     /translation="MGVNEEGYNELTLSNIKDKEQIYLKAQKDYDELVQHNFTQRILN
                     DKDSIVDGIYNERIKKVHTQTIDLAKNVNVGGEYLTNVGLSKDTIVGLSNTLNVGVDN
                     KVRVSKNSSEYVGENKDIEIGANQNTIIHKDEIRNVKGNKKEVVEGHYGINVSDKMQV
                     LSEKEMDYKSKDNILFTSNESIGFESDKNTSMVADNITTYAKTIHELKADSEATIQVG
                     ETIINAKPDCVIIKAGGVEVTIDSNGLVVRGGELKAE"
     gene            840..1619
                     /locus_tag="SFZ04_000269"
     CDS             840..1619
                     /locus_tag="SFZ04_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064581.1"
                     /translation="MNKPFYKLKRFYIPCGVLVALIIFTSLTYHFLQRPLELIFWDRY
                     YYEKEYQNAKDMYKLFKSNEEEFKKVFKEQNLNEELKTNQKELLNYMHHFKRDSNFMQ
                     ILGLDNAYLKALRDKTSIFGRKSENNLNYFYLASNSTTNLDEMNNFISIIDKYIIFIN
                     KIDTLPDTYTLMKIAFNADYFLFNLVPFASSLDKNFICSIPQKEQLLENMINSYEKMD
                     LLYKTKLKTEIQEMIYPAIYATKKLNHFIDIAKGRLNACGK"
     gene            1603..1776
                     /locus_tag="SFZ04_000270"
     CDS             1603..1776
                     /locus_tag="SFZ04_000270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064582.1"
                     /translation="MHVENNLSPEDRQGIENYLIILNTISFLGDLNIKYNNHNVKIKN
                     YSSGYCKYYCKIA"
     gene            1792..2652
                     /locus_tag="SFZ04_000271"
     CDS             1792..2652
                     /locus_tag="SFZ04_000271"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064583.1"
                     /translation="MKKLFYRLNFLFNTKLKKLTWIVAILFIGYKLLFYTEIKNGYVK
                     VTLRPIVTLNQVGYCIKEGRRLSQNELFERATKDWLEKLYNQAHDPLVMNADGDWLDI
                     TNCYYSSKEKAKKGLNCQFYSNGKQFGIDDIAKQIDLNKSQEENMQKIMQGFSIVRPF
                     EEEKILTDDLELKYSLLLQDRLGDFTFMPYDIRFIVVGGDTGYYSKFGYSVFALMIQK
                     YFIGNDHDFKFKKGTVEYWKNKDNKNNHEYIYYPITNCGEVEMRYDFDPPGLYYQLFH
                     DMQWRDEWHR"
     gene            2640..2924
                     /locus_tag="SFZ04_000272"
     CDS             2640..2924
                     /locus_tag="SFZ04_000272"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064584.1"
                     /translation="MASLNLKGDYGVEILSYYLWGQSTPPSDLARKDNRVLIGKDYQA
                     RDEKEIIIQASALDYMKYVDRYTNATNFGIFQNFFKSVFSEKELGNLKIK"
     gene            3086..4582
                     /locus_tag="SFZ04_000273"
     CDS             3086..4582
                     /locus_tag="SFZ04_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064585.1"
                     /translation="MAVRIIHYYLDTNSGNYAKRAFAFGSTSIAFNKDVKFHISAKTY
                     EPVCISNLKLYPLKDNFDFESDSSLAEFVNFFLEKELDPLKIGRTVNIHFIDQEKITP
                     MVIYKRVFQILQNQSFNSLTPSITSLREYYKTRILPSGVLYLQDDNTNSQTNLEQTIL
                     YNNTSFNKISKEPLNESSSSAKEPCFITLYLKDEHNKPIANAKIIIKGFKHDEALRVV
                     NLKRRSDEKGKIRFDKEKYFSDCYSFKVKLDESEAYFPTPLQNAKRIFNNYTHHKVGL
                     ILKFKAKDHLVYDGFNLYHYKGNELINSYMARSGTAKADNEKRSKKQIANYFYQDEKD
                     TSKGKKAYFYYDDESIKDRFGTLPEGEYYLKINEIAKDTNPSFLKDYPFEIGKTWGKC
                     CVRLYTNKECSKTFKEVKIKESNEKENKTSKKEQSIIKDNLYLYSINEKGEFGSSGSI
                     GMAQAQLLEDLNKQAKFVRSEGENIISLKVAYPEKIDNKIIFVGKVYE"
     gene            4575..5849
                     /locus_tag="SFZ04_000274"
     CDS             4575..5849
                     /locus_tag="SFZ04_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064586.1"
                     /translation="MNKTLIFHENSHIDLNASFAPGTYISLQLEKESDEKLKWAFVEC
                     ESKEKLNLLLHDCNGYIDEKNLKVLFENDDLIYNESYEDNILSFCLPINRSNEPKEDI
                     QDYKYYIVLFAYSSEKTMPNLEDHYIIIDMSFRVGVGDDEDVEESKLRNDFNSDIIQT
                     NCIFSVFEAVEFLKACQSFKEKAKETNNYEFFKNYPQLAGKIAYIYYRFDLANEIFIK
                     SVSDGDKYLKEREKFVKKFIDVYSDEKFFIIPSYKAKFSEFSNKSDEEKIMFFQEFLE
                     DLVKAFDIEPPIPTIYKEFKQYNNGSYNSVGKKALYLNLKNKEEQILSTFFHEFRHFY
                     IDKNNSKEIKNQHTESIFKLIYSNGYFKFENVVMFWAYDKKCIISNNYTDCVGVKPYK
                     YSIFSDKPAIYWFSPSERDARISTFYFEKYRG"
     gene            5830..7098
                     /locus_tag="SFZ04_000275"
     CDS             5830..7098
                     /locus_tag="SFZ04_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064587.1"
                     /translation="MKNIEVDMLEVAIKNIFKHKDFLQTRKEPYAIYLAINTNIKSYN
                     NICPSEKYFWKFNDMNELECYNPKFGIYLGKIVFDKKGNKLIPKYIPAKFENLEEEVK
                     KIKNPLWLANKNPNYIKPKFYDGMGGGYYFESPNNLEYQCKIEKDTQILSQEQIISYV
                     KELYSKNTMIIKNYIDAINKNHGIKPFVFNDEIYDQLGEVGILTKEQANNFKDKSYIK
                     KNPILLAMLDYLAKQNKKDEDYLITFDDEYFYADLVWSLKDFLLELSYGLFQDETKLL
                     FNPAAYMDDTKIDYKNLNEEINKRYEKILLDMGFEGENGYFNDYYDYGFGNNGIFKFN
                     IYDYFAYDEIGVRPYVSPRSPFYSPNFVYSDGNYHGDAKLIPSALGKYYFELSYQKGV
                     YIELLRPYYPSIKDLPEGWDNKMLEKANLK"
     gene            complement(8155..8604)
                     /locus_tag="SFZ04_000276"
     CDS             complement(8155..8604)
                     /locus_tag="SFZ04_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064588.1"
                     /translation="MVIFCAALALLLFLGVIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(8620..11865)
                     /gene="ccsA"
                     /locus_tag="SFZ04_000277"
     CDS             complement(8620..11865)
                     /gene="ccsA"
                     /locus_tag="SFZ04_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEG8064589.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNKNKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAIANILEIPS
                     AKYISYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWIRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            complement(11883..12578)
                     /locus_tag="SFZ04_000278"
     CDS             complement(11883..12578)
                     /locus_tag="SFZ04_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8064590.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(12565..13335)
                     /locus_tag="SFZ04_000279"
     CDS             complement(12565..13335)
                     /locus_tag="SFZ04_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8064591.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(13332..14384)
                     /locus_tag="SFZ04_000280"
     CDS             complement(13332..14384)
                     /locus_tag="SFZ04_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG8064592.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYVAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIMAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLYIQSMPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(14384..15280)
                     /locus_tag="SFZ04_000281"
     CDS             complement(14384..15280)
                     /locus_tag="SFZ04_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG8064593.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(15299..16408)
                     /locus_tag="SFZ04_000282"
     CDS             complement(15299..16408)
                     /locus_tag="SFZ04_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8064594.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(16430..17545)
                     /locus_tag="SFZ04_000283"
     CDS             complement(16430..17545)
                     /locus_tag="SFZ04_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8064595.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVGNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(17576..18010)
                     /locus_tag="SFZ04_000284"
     CDS             complement(17576..18010)
                     /locus_tag="SFZ04_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8064596.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(18019..18210)
                     /locus_tag="SFZ04_000285"
     CDS             complement(18019..18210)
                     /locus_tag="SFZ04_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HEG8064597.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(18263..18769)
                     /locus_tag="SFZ04_000286"
     CDS             complement(18263..18769)
                     /locus_tag="SFZ04_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HEG8064598.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(18778..19809)
                     /locus_tag="SFZ04_000287"
     CDS             complement(18778..19809)
                     /locus_tag="SFZ04_000287"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEG8064599.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAIVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(19809..21110)
                     /gene="flgR"
                     /locus_tag="SFZ04_000288"
     CDS             complement(19809..21110)
                     /gene="flgR"
                     /locus_tag="SFZ04_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HEG8064600.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDIRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(21167..21616)
                     /gene="flgQ"
                     /locus_tag="SFZ04_000289"
     CDS             complement(21167..21616)
                     /gene="flgQ"
                     /locus_tag="SFZ04_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HEG8064601.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(21592..22107)
                     /gene="flgP"
                     /locus_tag="SFZ04_000290"
     CDS             complement(21592..22107)
                     /gene="flgP"
                     /locus_tag="SFZ04_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HEG8064602.1"
                     /translation="MKKIYFMLAIAGIFAGCVSSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDQNFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(22177..24765)
                     /gene="gyrA"
                     /locus_tag="SFZ04_000291"
     CDS             complement(22177..24765)
                     /gene="gyrA"
                     /locus_tag="SFZ04_000291"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HEG8064603.1"
                     /translation="MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFIPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            complement(24806..25381)
                     /locus_tag="SFZ04_000292"
     CDS             complement(24806..25381)
                     /locus_tag="SFZ04_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEG8064604.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNHIKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(25378..26022)
                     /locus_tag="SFZ04_000293"
     CDS             complement(25378..26022)
                     /locus_tag="SFZ04_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064605.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(26099..27895)
                     /gene="lepA"
                     /locus_tag="SFZ04_000294"
     CDS             complement(26099..27895)
                     /gene="lepA"
                     /locus_tag="SFZ04_000294"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEG8064606.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            28022..29296
                     /gene="cmeD"
                     /locus_tag="SFZ04_000295"
     CDS             28022..29296
                     /gene="cmeD"
                     /locus_tag="SFZ04_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HEG8064607.1"
                     /translation="MFEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            29293..30033
                     /gene="cmeE"
                     /locus_tag="SFZ04_000296"
     CDS             29293..30033
                     /gene="cmeE"
                     /locus_tag="SFZ04_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HEG8064608.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            30036..>31522
                     /gene="cmeF"
                     /locus_tag="SFZ04_000297"
     CDS             30036..>31522
                     /gene="cmeF"
                     /locus_tag="SFZ04_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HEG8064609.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKITKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQK"
BASE COUNT        11481 a         5253 c         4156 g        10632 t
ORIGIN      
        1 tccaagttta gtaaatcttc cttttaatga tcaccaaact tctctttctt ctaaaaccat
       61 aggtgttaat gaagaaggtt ataatgaact taccctctca aatataaaag ataaagaaca
      121 aatttattta aaagcgcaaa aggattatga tgaattagta caacataatt tcactcaaag
      181 aattttaaat gataaagatt ctatagtgga tggaatttat aatgaaagga ttaaaaaggt
      241 tcatactcaa accatagact tagctaaaaa tgtcaatgta ggaggagaat acttaactaa
      301 tgtaggctta tctaaagata ccatagtagg attaagcaat accttaaatg taggagtaga
      361 taataaagta agagtatcta agaattctag cgaatatgta ggagaaaaca aagatataga
      421 aataggtgct aatcaaaaca ctattatcca taaggatgag ataagaaatg tgaagggaaa
      481 taaaaaggag gtggttgagg ggcattatgg tattaatgtc agtgataaaa tgcaagtgtt
      541 aagcgagaaa gagatggatt ataaaagcaa agataatatt ctttttacaa gcaatgaatc
      601 cataggattt gaaagtgata aaaatacaag catggtagct gataatatca caacttatgc
      661 aaaaactatt catgagttaa aagccgatag cgaggcgact atacaggtag gagaaacaat
      721 tattaatgca aaacctgatt gtgttatcat taaagcaggt ggagttgaag taactataga
      781 ctctaatgga cttgtggtta gaggtggaga acttaaagca gagtaataaa ggataaacaa
      841 tgaataaacc cttctacaaa cttaaaagat tttatatacc ttgtggtgtg cttgtagctt
      901 tgattatttt tacaagctta acttatcatt ttttacaacg acctttagag cttatctttt
      961 gggatagata ttattatgaa aaagaatatc aaaatgctaa agatatgtat aaactattta
     1021 aaagtaatga agaagaattt aaaaaagttt ttaaagagca aaacttaaat gaagaattaa
     1081 aaacaaatca aaaagaattg ttaaattata tgcatcattt caaaagagat tctaatttta
     1141 tgcaaatttt aggtttggat aatgcttatc ttaaagctct tagagataag acaagtatat
     1201 ttggaagaaa aagtgaaaat aatcttaatt atttttatct tgcttctaat agcactacta
     1261 atttagatga aatgaataat tttataagca ttatagataa atatatcatt tttatcaata
     1321 aaatagatac attgcctgac acttatacac tcatgaaaat agcctttaac gctgattatt
     1381 ttctttttaa tctcgtccca tttgcttcaa gcctagataa aaactttatt tgctctatac
     1441 cgcaaaaaga acaattatta gaaaatatga taaattctta tgaaaaaatg gatttattat
     1501 acaaaacaaa actaaaaacc gaaattcaag aaatgatata cccagcgata tatgcaacaa
     1561 aaaaacttaa tcatttcata gatattgcca aaggaagatt aaatgcatgt ggaaaataat
     1621 ttaagtcctg aagatagaca aggtatagaa aattacctta ttattttaaa tacgataagt
     1681 tttctaggcg atttgaatat aaaatataac aatcataatg taaagattaa aaattattct
     1741 agtggttatt gtaagtatta ttgtaaaata gcttagattt taggattata aatgaaaaaa
     1801 cttttttata gacttaattt tttatttaat acaaaattaa aaaaattaac ttggattgta
     1861 gctatattat ttatcggata taaattactt ttttataccg aaattaaaaa tggttatgta
     1921 aaagtgactt tacgtcctat agtaacactt aatcaagtgg gttattgcat aaaagaaggt
     1981 agaagattaa gccaaaatga attatttgaa agagctacta aagattggct tgaaaaactt
     2041 tataaccaag cacatgatcc actagttatg aatgcagatg gagattggct tgatatcact
     2101 aattgctatt attcaagcaa agaaaaagca aagaaaggtt taaattgtca attttacagc
     2161 aacggcaaac aatttggtat cgatgatatt gcaaaacaaa ttgatcttaa taaaagccaa
     2221 gaagaaaata tgcaaaaaat aatgcaaggc tttagcattg taagaccttt tgaggaggaa
     2281 aaaattttaa cagatgattt agagcttaaa tattctttac tcttacaaga taggttaggt
     2341 gattttactt ttatgcctta tgatattaga tttattgtcg ttggtggtga tactggttat
     2401 tattcaaaat ttggttattc tgtttttgct ttaatgatac aaaaatattt tattggaaac
     2461 gaccatgact ttaaatttaa aaaaggcact gtagaatatt ggaaaaataa agataataaa
     2521 aacaatcatg aatacatata ttatcccatt acaaattgtg gcgaagttga aatgcgttat
     2581 gactttgatc ctcctggatt atattatcaa ttatttcatg atatgcaatg gagggatgaa
     2641 tggcatcgtt aaatttaaaa ggcgattatg gagtagaaat tttatcctat tatctttggg
     2701 ggcaaagcac accgccaagt gatttagcca gaaaagataa ccgtgtgctt ataggtaaag
     2761 attatcaagc aagagatgaa aaagaaataa tcatacaagc ttcagcactt gattatatga
     2821 aatatgtaga tagatatacc aatgctacaa attttgggat atttcaaaat tttttcaaaa
     2881 gtgtttttag tgaaaaagaa cttgggaatt taaagataaa atagaaaatg aaacatatat
     2941 tttagaatta gacgatatca taaaaactaa ggtatatgga ggtgtaaatc cgtttcttga
     3001 tgaagataat aagaataaag ataaaagcac taaagataaa gaaaataatg aagaaaataa
     3061 atacgaaaaa tacgatgaaa ataaaatggc agttagaata attcattatt atttagatac
     3121 aaattcaggc aattatgcta aaagagcttt tgcttttgga agcacaagta tagcatttaa
     3181 taaagatgta aaatttcata ttagtgctaa aacttatgaa cctgtttgta tttccaatct
     3241 aaaactttat cctttaaagg ataattttga ttttgaaagt gatagcagtc ttgcagaatt
     3301 tgtaaatttc tttctagaaa aggaattaga tcccttaaaa ataggtagaa cggttaatat
     3361 tcattttata gatcaagaaa agattacacc tatggttatt tataaaagag tatttcaaat
     3421 acttcaaaac caatctttta attctttaac tccttctata acttcacttc gtgaatatta
     3481 taaaacccgt atcctgccat ctggggtatt atatttgcaa gatgacaata caaactctca
     3541 aaccaattta gaacagacta tcctctacaa caatacaagt tttaacaaaa tttcaaaaga
     3601 acccttaaat gaatcctcat ccagtgctaa agaaccttgc tttatcactt tatatttaaa
     3661 agatgaacac aataaaccca ttgctaatgc taaaatcatt atcaaaggtt ttaaacatga
     3721 tgaagcttta agagtagtta atctaaaaag acgcagtgat gaaaagggta aaataagatt
     3781 tgataaagaa aagtatttta gtgattgtta tagctttaaa gtaaagcttg atgaaagtga
     3841 agcttatttt cctactcctt tacaaaatgc taaaaggata tttaataatt atacccatca
     3901 caaagttgga ctcatactta aatttaaagc aaaagatcat ttagtttatg atggatttaa
     3961 tctctatcat tataaaggaa atgaattaat taattcttat atggcaagaa gtggtactgc
     4021 taaggcagat aatgaaaaaa gaagtaaaaa gcaaattgca aattattttt accaagatga
     4081 aaaagataca agtaaaggta aaaaagctta tttttattat gatgatgaaa gtattaaaga
     4141 tagatttggc actttgcctg aaggagaata ttatttaaag attaatgaaa tagctaaaga
     4201 tactaaccct agctttttaa aagattatcc ctttgaaata ggaaaaactt ggggaaaatg
     4261 ttgtgtaaga ttatatacca ataaagaatg ttctaaaact tttaaagaag taaaaataaa
     4321 agaaagtaat gaaaaagaaa acaaaacaag caaaaaagaa caaagtataa taaaagataa
     4381 tctatatctt tactctatca atgaaaaggg agagtttggc agtagtggta gcataggtat
     4441 ggcacaagca cagttattag aggatttaaa taagcaagct aagtttgtgc ggagtgaggg
     4501 ggaaaatata atctcactca aagtggctta ccctgaaaaa atagataata aaattatatt
     4561 tgtaggaaaa gtttatgaat aaaacactaa tatttcatga aaattcccat attgatttaa
     4621 atgcttcttt tgcaccaggg acttatataa gcttacaact agaaaaagaa agtgatgaaa
     4681 aactaaaatg ggcttttgta gaatgtgaaa gcaaagaaaa attaaattta ttattacatg
     4741 attgtaatgg ctatattgat gaaaaaaatc ttaaggtatt atttgaaaat gatgatttga
     4801 tttataatga aagctatgaa gacaatattt tatccttttg cttgcctata aatagaagca
     4861 acgagcctaa agaagacata caagattata aatactacat agttttattt gcttatagta
     4921 gtgaaaaaac tatgcctaat ttagaagatc attacatcat catagatatg agctttagag
     4981 tgggagttgg agatgatgag gatgtagaag aaagtaaact aaggaatgat tttaatagtg
     5041 atataattca aacaaattgt atttttagtg tttttgaggc tgtagagttt ttaaaagctt
     5101 gccaaagttt taaagaaaaa gcaaaagaaa caaataatta tgaatttttt aaaaattatc
     5161 cccaacttgc aggaaaaatt gcttatattt attatagatt tgatttagct aatgaaatat
     5221 ttattaaaag tgtaagtgat ggagataagt atttaaaaga aagagagaaa tttgttaaaa
     5281 aatttataga tgtttattct gatgagaaat tttttatcat accaagctat aaagcaaaat
     5341 ttagtgaatt ttcaaacaaa agtgatgagg aaaaaattat gttttttcaa gaatttcttg
     5401 aagatttggt aaaagctttc gacatagaac caccaattcc aactatttat aaagagttta
     5461 aacaatacaa taacggatct tataatagtg taggaaaaaa agcattatat ttgaatttaa
     5521 aaaacaaaga agaacagata ttatcaactt tttttcacga atttagacat ttttatattg
     5581 ataaaaataa ttctaaagaa ataaaaaatc aacatacaga aagcattttt aaactcatat
     5641 attctaatgg atattttaaa tttgaaaatg ttgttatgtt ttgggcgtat gataaaaaat
     5701 gcataattag taataattat acagattgtg tcggagttaa accttataaa tacagtatat
     5761 tttcagataa gcctgcaatt tattggtttt ctccaagtga aagagatgcg agaataagca
     5821 cattttattt tgaaaaatat agaggttgat atgttagaag tagccataaa gaatatattt
     5881 aaacataaag atttcttaca aaccagaaaa gaaccttatg ctatttattt agccataaat
     5941 acaaacataa aaagttataa taatatttgc cctagcgaga aatatttttg gaaatttaat
     6001 gatatgaatg agcttgaatg ctataatcca aaatttggca tatatcttgg taaaattgtt
     6061 tttgataaaa aaggcaacaa actcatccca aaatacatac ccgctaaatt tgaaaattta
     6121 gaagaagaag ttaaaaagat aaaaaatcct ttatggcttg ctaataaaaa tcctaattat
     6181 attaaaccta aattttatga tggtatgggt gggggttatt attttgaaag tccaaataat
     6241 ttagagtatc aatgtaaaat agaaaaagac actcaaattt taagccaaga acaaatcatt
     6301 tcctatgtga aagaacttta tagtaaaaac acaatgataa taaaaaatta tattgatgca
     6361 atcaataaaa atcatggcat aaaacctttc gtatttaatg atgaaattta tgatcaatta
     6421 ggagaagttg gcattcttac aaaagaacaa gctaataatt ttaaagataa aagttatatt
     6481 aaaaaaaatc caatattgct tgctatgctt gattatttag caaaacaaaa taaaaaagat
     6541 gaagattatt taatcacttt tgatgatgag tatttttatg ctgatttggt ttggagttta
     6601 aaagatttct tattagagct ttcttatggt ttgtttcaag atgaaaccaa gcttcttttt
     6661 aatcctgcag cttatatgga tgacacaaaa atagattata aaaatttaaa cgaagaaata
     6721 aataagcgtt atgaaaaaat attgcttgat atgggatttg aaggagaaaa tggttatttt
     6781 aatgattatt atgattatgg ctttggcaat aatggtattt ttaaatttaa catatatgat
     6841 tattttgctt atgatgaaat aggagtgcgc ccatatgttt ctcctagaag ccctttttat
     6901 agccctaatt ttgtctattc tgatggaaat tatcacggag atgcaaagct tatcccttct
     6961 gctttaggaa agtattattt tgagctttcc tatcagaaag gagtttatat agaactttta
     7021 cgcccttatt atccaagcat aaaagattta ccagaaggtt gggacaataa aatgctagaa
     7081 aaagctaatt taaaataaat atgagcatcc gtgaataaac ccttctacaa acttaaaaga
     7141 ttttatatac cttgtggtgt gcttatagct ttgattattt tataagctta acttatcatt
     7201 ttttacaacg acctttagag cttatctttt gggatagata tgatatatcg aaattatcta
     7261 ttaataacga agagaaaaat tttaaaacaa tgaaaactgt gattactcct actttcgcta
     7321 acacttagaa gtaggagctt cctaactaaa gccaagtatt cttagctagc tcgaaaggct
     7381 tcttgtttat agcttacacc taaattttca tataaaatat taaaacttat acaaaaatct
     7441 ttcataaatt gtttcagaag ttaaagaatt tgtttggtat aattacatta agggtttaag
     7501 ccgcaggctg accccctacg gctaaattgt gaaacccctg aaaggaggta cataaaactc
     7561 attctagtgg ttattatact gctttgttta tttatagtca aggcatatta accaagctca
     7621 atttttgggg caactggagt gggttacctg cggtatcaaa caaactttta accaagctta
     7681 tctcctttat attgaattat tttatttttt aatttatatt tttcttgctt atactaaaag
     7741 ataagattca attataaaca aaatgtatta agaagctaaa gagtttgttt ggtataatta
     7801 taaaaggtag atgccaaagg gctacaaccc tttagcgtta atttaccgcc cagaagggag
     7861 gtgattaaat tgctaaacaa aattatagta ataattatac tactttgtat aattatagtc
     7921 aagtgttatt aatacttgat ttcccatttt ttaaagggga gctataattt tccctttggc
     7981 ttaccaaaca aacttttaac taaacttctc ttcttctatt gattttctat atttgaaaaa
     8041 ttttattttt taaaaagtat atgttaaagt atatgttttt tgtattatta atttttcaag
     8101 tatgttcttt tggttatttt aactataaat cacagtcctc ttgagcgcac catattattt
     8161 atcttcttta atttttcttt tagctaatcc catatgctcg taagcatcaa tttctttttt
     8221 gtaagatcca gaaattttct taagttcttt atttaagtaa cttactgttt gtgcacttgc
     8281 attaatattt gcagccaaag cagaaacaaa ttctagtttc ttttttgctg cttcatctaa
     8341 ttctttagaa gtttttgaac caagtttatg tgtctgcaca taaagtttgg caagttcttt
     8401 taattcaata tccgttagtt taacatcgga agcagcaatt atcattttat ctaagtctgt
     8461 atcaaatttt ttagtctttt cagctacatg ctgcttttgg ctagtttttt gctttttaat
     8521 tgtttttttg ccatcacttg taataagata agcaatcacg cctaaaaaca ataaaagcgc
     8581 taaagcagca caaaaaataa ccaaaaaaat atggttcatt taaagtttgc ccacaaaatt
     8641 tcgcttcctt cttgcaaaaa aagctaaaac caccatcaat gcaaatcccc aataaacata
     8701 attaggaatt tgagccgctt cgcctgcagc gtaagaatga agtcctgtta aaaagtaatt
     8761 tactccaaaa taagtcataa taataaccca ataagcaaac atactccata aagcaaacac
     8821 aaattgatta caatattttg gaatcattct aagatgcaaa attgctgcat aaaccaaaat
     8881 gctaactaaa gcccaagttt ccttagaatc ccaactccaa tatctccccc aactttcatt
     8941 tgcccaaatt gctcctaaaa aatttcctac agtaagcaaa caaagtccaa aaatcattgc
     9001 catttcatta attcttgtag cctctgtaat atttctcaaa atattaagat tatattttcc
     9061 atctttctta agaaaacaca tcaagaacaa tgtaaagata ccaagtaagg cacaaagtcc
     9121 taaaaatcca taactagcag taataacaga tacatgaata ctaagccaat aagaattaag
     9181 cacaggaaca agatttgtaa tttgcggatt catttcgctt aaatgcgcaa ccattaatac
     9241 aacaccagat aaaatagaag ttaatgacaa ggctatagga ctttttctgg agaaaaatat
     9301 acccgacaaa gacaatgccc aagctatata caccatactt tcatagccat tactccatgg
     9361 agcatgacct gataaataag cacgaagtcc aagacctact gtatgaatta caaaagctaa
     9421 aacatttaaa acatatacca ctttaaatat aaaagagatt tttaaattcg gtacgaccat
     9481 tttagaaaaa acaagaatca agagtaaaaa acccgcaatt aaatatacag gagcgagttt
     9541 aacgaaaatt tcagccttat tagaaaaaat ttccatttca accttggttt tactaggcat
     9601 gactttatat cctatttttt cttgatattc tttgataaat ttcaagcctt catcagctct
     9661 aatccaatta ccatctttaa aagcattttc cacggcacta aaataattct gtattaaagc
     9721 caaaacaata tgcccttcat cccccttaag agtagttaca gcagaaaaag gtgcaagcca
     9781 aacattattt ggattatttt gaacaggaat aaatttaaat aattcaccac taaaaactaa
     9841 atttacaaca ttagctcttt catctagttt tataatttcc ttatcaaaaa ctcctcttgc
     9901 atttgggttt ttacgatttg cattttcaac atatttttga agtttatatc ggttattctc
     9961 atcaaagaaa tctttataag aaatatattt agcactagga atttctaaaa tatttgcaat
    10021 agcatcacga actgcttgat tttgtggcat taaaataaaa ggttccattt gccatttatc
    10081 tacatcaacg agcatggaaa gcataacagc gttagaattt tgacccttat agctatcact
    10141 ttgatgaatt ttttctaaaa tttctcttga tagcgtatca aaaggcacca ttcttccatc
    10201 tgctgatttt tgaactatta aagtggcaag agctttagca tgattagtat ttaccacagg
    10261 taaggtcgaa tttaaatctt gagcaaaagt cttttcagaa ccaaaagata acaataaaat
    10321 aaaaataatc acacttgtat gttttaaagt gtctttatta attaatcttg ccaaagttct
    10381 aaatctagaa tgtggattta aaaaattcat aaacattcca agacaaagca gaaaataacc
    10441 tatataagtt ggtattttgc ccggatcttt atttacagat aaaacagtcc ctttttcatc
    10501 ttgatcataa gaactttgat aaaatctata gccatcataa tctaaaacat tattcataaa
    10561 aattctataa tcaaaatttt cattattatt ttttacggta atttcacttg cataagaagc
    10621 tggagacata gaacctggat aacgatctaa tacaaaatct cttaaataaa tatcaaaagg
    10681 caattgttca taagaaagcg cccaagaaat aaagaatttt tgatctgcaa gttctatcat
    10741 aataggttta ttatattcaa aaatataaaa ttctttactt tcatttttat agcttaattc
    10801 taattttaaa gcattagagc cagttaattc taagttttta ttcttattgc ttaaggcaaa
    10861 atctttaaaa tgcaataata aagaattttt ccaattttga ggctcgccaa aagtagaaat
    10921 caacatagtt ctacccactt ctaaccaagc agatttaaac cataaccaaa aactttcatc
    10981 ttgaggtcta ttggagcctt ctaaagcttc ttgcgcatgc aaagaagcag ctttaactac
    11041 aaagctgata tcattaattt catagagtct tctttcctta gcatttgcct tttctccaat
    11101 tttaaggtct aaattttgtc catctagcat acttagaaaa tgtaagtttt cacttgaact
    11161 taaagttaaa ttttcatcaa tttttacaaa aggtgcttta acattatcat tcataaaagc
    11221 aaagttaacc ccttctatat tcttaacttc acctttttca aatttaacat caacaccttg
    11281 agatcctttt tgagaaagca tcaaaaccaa taaaggatca gaattattat tttctttata
    11341 agtataatga gcatttaaga ttaaatcttt atattttaat acagcttgat catcacctaa
    11401 attaagtttt agtttaaaag aattagcaaa aggcaaattt cctatataac gatcattaac
    11461 cgcactatag cgttctccat cttttatagc agaaatacgc aaagaagttt tagaactttc
    11521 tataagtgaa ttttgagtat gctctctaat aggtaaaata ccttcaaaac cagcatatct
    11581 tgtcattgca gaacccacta aaataaataa aaaagaaata tgaaaaatca ttaaaggtaa
    11641 ttttttaagc ccaaacattt tataacgaaa catcccgcat agtaaattaa taccaagtaa
    11701 aagttgtata tattcaaacc aaaaagtatc ataaaccatt gcccaagccg taggagttcc
    11761 ataagcactt tcaataaaag ttgccaaagc acaaaaaagc gcaaaaagca aaaacaatac
    11821 aaccgaaact cttaaatccc ctatgctttt tattatattt ttcattcttt ttcctttaaa
    11881 ttttaaagcc ctaaatattt ctttctaatc tcatcatcac ctattaaatt tttagcctcg
    11941 ttttccatta caatgcgacc attttccaaa acataagcat aatcacttat ttttaatgca
    12001 gaataggcat tttgctctac caaaagaata gttataccct cttcttttaa acgcacaata
    12061 atatcaaaaa cttcacccac aatctttgga gcaagtccca aagaaggttc atccaacatc
    12121 aaaagttttg gttcactcat taaagccctt gaaatcgcaa gcatttgcgc ttcccctcca
    12181 ctcaatgttc cagctaaagc atgcttttta cttgcaagtc ttggaaaaag tttatacatt
    12241 tgctctctta aatgctcata attttcagca ttattaaaag cacctatttt taaattttcc
    12301 tctacgctta aattaataaa aacacgcctt ccttcaggaa ctaaagctat acctttttga
    12361 actaaagtat gagttaaatg ccttttagta tcataaccta agaaattaac ctcaccagtt
    12421 cttttaactg agtttaaaag cgcatttaaa gttgaagttt tacctgctcc atttgaacct
    12481 ataagagaaa caatatgacc tgtttccact ttaaaatcaa tccctttaac agcttcaatt
    12541 aatccataat aaacatgcaa atctttaact attagcatca aaatccccta aatacgcagc
    12601 aattacttct ttatgattta cagcatcgca aagtttacct tcaaaaattg tttttccata
    12661 atcaagtacc aatacgcgat cacacaattt atttacaaat ttcatatcat gttctataag
    12721 caaaacgcta attttataat cttttcgtaa tttaaaaatg agctcagcaa gttcatcact
    12781 ctcagagcta ttcatcccag cggctggctc atcaagcaat aataatcttg gttgagtagc
    12841 cattgctctt gcaatctcaa cttttctttg ttgtccataa ctcaagctag tagccttttc
    12901 ataggcaaat tctgcaatac caagttcttc taatattgca taagccttct ctttaaatac
    12961 ttgttctatt tttccaaaac gccctaaatg caaaaaggct tcaaaaatat tatatttcat
    13021 ttgtttatta aaaccaataa gaacattttc aagcacattc atgcttgaaa aaagcctaat
    13081 attttgaaat gttctagcta ttcctaaatg cacaatctta tgaggtttta agtgatcaat
    13141 tctttctcct agaaattcaa ccgaacctga actaggttta tagttacctg ttataatatt
    13201 aaaaagagtt gttttgccag ccccattagg tccaattaaa gcaaaaattt caccctcatt
    13261 gattttaaaa gaagtttcat taatagcctt aacactacca aaactttttg aaatttgttt
    13321 taattccaaa atcatttttt gctcctttta aaacgctttt taatccctct aatcacatca
    13381 ctcaactcat aataacccat tatgcctttt cttgcaaaaa gcattactaa aatcagaaca
    13441 atagaaaaaa caaccattct aagccctggc attgattgga tataaagatt taaagaatct
    13501 atttttatat ttaattcatc taaaaatcta agccactcac ttccaccaat aaccaatatc
    13561 gcacctataa tagcacctgt agtagaacca agtccaccta aaacaataat aatcaaaagc
    13621 tgaaaagtaa gtaaaaaatc aaattgagtt ggagatacgg tagtcaacag acaagctaaa
    13681 agtccgccac ctacaccttc taaaaatgct gaagtgctaa aagctaaagt ttttatccaa
    13741 aaagtattta ttcccatagc gcttgcagca tcttcatcat ctcttatagc cttcattgca
    13801 cgaccatatt tagaataaac tatatttaaa attaaaataa ccgctacaat agcaatacca
    13861 cctgtccaat agatcgtgga aaattgtgga atatctacca gccctcttga gccattagta
    13921 atagaaggaa aattaatagc agctatttta ataattattc caaagcctaa agttacaata
    13981 gccaaataat cccctctcac gcgaaataca gcaaaagcca aaatcagggc aagtaaagat
    14041 gaacaaattc cagccataat taaagctaga ataaaggaat ttgaatggat agctaaaata
    14101 aaagaactag gaccatctaa aaaaaactga tcattttttg catcagcact taaaagaact
    14161 aaagcagcca cataagctcc aatcgcaaca aatccattgg gttctagtga aaattgtcca
    14221 gttacaccat taataaggtt gtaactcaca gccaaaataa taaaaatagc aatttgatta
    14281 acaatgttta atccatagtc cccaaaaata taaggagaaa tgaaaataaa aataattgaa
    14341 gcaattaaaa agattaaatg tgaaacctta attctaacca tcattaaaac ctactctttt
    14401 caaaatttat acctaaaatt cccgtaggcc taaataacaa tataaacacc aaaaaaataa
    14461 aagcaaatgc atctttaaag cctgataaat ctggaaaaaa agccacaaca acaacttcag
    14521 taaatcctat aataagtcca cccaaaactg cacctactac agaacctata cctcctaaaa
    14581 ctgcagcagc aaaagctttt aaacctatta aagttcccat agtaggttca acagagtaat
    14641 aatttgcagc ccaaaaaaca cccccaactg ctgccaaagc tgaacctagg gcaaaaacta
    14701 tagcaataat acgatttgca tctataccca ttaaatttac tgtttgtata tcaaatgcca
    14761 aagcacgaat agctatacca tatttgcttt tatacaaaat ccataacact gctattaaaa
    14821 taacaaatgt aagagcagga accattaaag aaccataagt tgttatcact ccaccaaaat
    14881 taacactttc ctcaaaataa cttggcggtg taaaagttct aggtgttgaa gtaaaaagca
    14941 tattaaaaag attttgcaag aaaaaactaa taccgattgc tgtaatcaac aatgaaattc
    15001 taggagcctg tcttaaaggt ttataagcga ttctatctgt agctattcca acacaagcag
    15061 caaaaatcat tgctaaagac aaagctccta gaaaaggaac atttagatta gtcatgcaaa
    15121 aaagagccgc ataagcacca accatcataa tatcgccgtg agcaaaatta ataagtctta
    15181 acacgccata aaccatagta tagccaacag caataagggc atacatactg cctaaactaa
    15241 gtccattaac aagttgttgt aaaaataaag tagaatccat aatctttcta tttttccttt
    15301 aaggattgat aatatcttta taattttgct tctgattttt aatttcttta accactacag
    15361 aacgagttgc atttcctgtt tgatcaatac tgataacacc agaaacgcct tgataatttt
    15421 tagtttggtg aattttttca ttgacacact tactagtaag attttcaacg caagcattca
    15481 tagcatttag cattacaaaa tacgcatcag cacccatagc tgaaaaattt ggaacttctt
    15541 ttgttccctt agctttttca taaacactga taaattcttt acttaatttt gtagttggat
    15601 tattagcatc aaaactatct gtgaaaatat aaccctcgct tgcatctcca gctaaactaa
    15661 taaaagtttg atcagcaact ccatctgcag aacccatagg aatatttaaa cctgcgagtt
    15721 ttgattgtct tgcaaataaa gaagcttcac tataataaag cggtaaaaaa ataaattctg
    15781 gatttaaact tttaacttga gctacaatag ctctaaaatc tttatcacct gaattaactc
    15841 ttaaaattct aagaatttga ccaccattag acttgtactg tttttcaaaa gcttttgcta
    15901 aacctaagga atagtcagtg ctttgatcta ctacaataac agcacttttg taattaagtt
    15961 ttgaaaaaac atattttgct aaagatgaac cttgaaaact atccataaaa catactcgag
    16021 aagaatatat ttttttatca agcaatctat caccagttgc agcaggagcg atcaatggaa
    16081 ttttattatc ttctgctacg cgcataactt gcaatgtatt agcagtaacc atttccccta
    16141 taaggcctat aactttatct tgagaaacta aacgatttgc tccactcgaa gattctaatt
    16201 tatcaccttt agtatcaata atagcaagag aaaccttatc tccattactt aaagctgatt
    16261 gcattgaatt tgcaagttta atcccttcta gtgcgctttg tccatatgct gcagtagctc
    16321 cgctaagcgg taaaacaact cctattttga cttccgcagc acttaaactt aaacttagaa
    16381 tacttgctaa aattaaactt tttttcattc tctaccttta ttttagtaat tatggattta
    16441 taattgtttt ataattttgt ttttgatttt gaatttcttt aatcacaaca gaacgaatgg
    16501 cattaccgct ttcatctatg ctaatcacac caccaacagc ttgaaaatct ttagtttgat
    16561 gaattttgct attaatacat tcgctgctaa gattaccaac gcaagcattc atagcattta
    16621 acattacaaa atacgcatca gcccccatag ccgaaaatgc tggaagttct tttgttcctt
    16681 taactttctc ataagctgca acaaaatctt ttcctaattg tgtagatgga ttgttataat
    16741 caaaactatc agtgaaaatt actccattaa cagcacttcc gccaagatct ataaaagttt
    16801 gattgttaac accatctcct gctgctaaaa gtttatcaaa accaatttgt cttgcttgtc
    16861 tcgcaattaa agcagcttca ggatgataaa taggcatata aacaaaatca ggatttaaac
    16921 tcttaagttg agaaaccaca gctctaaaat ctttatctcc tgaattaata acaagttttt
    16981 ttataatttt cccaccatta ttcttaaaag aattttcaaa agctcttgcc aaacctaaag
    17041 aataaacatt gctttgatct atgatgataa cagcattttt aagtcctaaa tccttagata
    17101 cataagtagc aaatttatct ccttgaaaac tatctttaaa acaaactcta cttgcatatt
    17161 tctttttatc tagcaattta tctccagatg ccactggagc tattagggga atttttttct
    17221 cttctgctat agaaatagct tgaatggtat ttggagttgt agcttcacca ataatcccaa
    17281 ggactttatc tgttgctatt aaacgattaa ctccatttga agtttcaagc ttatctcctt
    17341 ttgtatctat tgtgataagt ttaataacat ctccatttga aagttttggc tgtagcttat
    17401 tagccagttc aattccgtta aaaacatctt gcccataagc tgccacagtt ccagttaaag
    17461 gtaaaactac tcctatatta atatccttag catataagca atttaccata gttaaaacac
    17521 ttaaagttaa agttagtttt ttcatagtat tccttttaat tatagttttt acattttatt
    17581 ttagaaatat attatgtttt gttttttgcg caggttcttc ttcaagaaga tcttttactt
    17641 gcaaatcaag cgcaaaattt ccacctttaa tataagcaat aatattatct atatcctcgt
    17701 ggcttaaatt tctagcataa aaagccattt gagaagctgt tgtagaactg ctactatcaa
    17761 gagtataacc tatcaaagct cctttaatat cctcaggaga catatctttt aaaattctag
    17821 atcctataac actcttttca gcattatctc catggcaagt attgcattta ttttgaaaat
    17881 acaaagcctt cgctttttcc atatcatatt gcttatttgc atcaaaggta taagtaaaaa
    17941 atgatttcaa gttaatacca aaaagcgcaa caacaaatat tgaactaata aacaaccagc
    18001 gtgcaatcat gattttcctt attttattgt aatttctgtt tgtgttttat tttgatatct
    18061 atgtgttttt ttgttgtatt ttttttcttt tttaatatca tagcgataac gaacagtccc
    18121 tgaaacttct atatctttaa agacttcatc taacggagct gcaaaaacaa aatgatttaa
    18181 aatcatacca attaaaaata tttttttcat ttttattctt taaacacaaa aaaacgatta
    18241 tatcaaaaaa agataatcct tgttaatgac cacctttgtg taaaaaataa agtcctacac
    18301 aaagagctaa aatcgatcca gcaagaaaag ccatatccac aggagtagca aatttcatct
    18361 gtaaaaccct ttgaaagaaa tttaccacta agaccataat gataactttt gcaagcttgt
    18421 cttttaattg atctaagcta tgcacctcta aaaccttgct ttgttttgtt tgtttaaatt
    18481 cttctatttc gctgataaaa agctcataaa ctccaaaaga aaaaataaac aaaactaaag
    18541 ccataagata aagatcaaca gctcctataa ttaaagccac cacatcctca tgcaaatcca
    18601 cattagaacc tgcatcaaaa aaataattat aagtataaaa tataactttt aaaacatcat
    18661 aacttgcaat aaaaaacaat acaaaagctc caattaaacc aaaaattacg ggtaaaattg
    18721 taacaatacg acttctaaca agtaaagatt caaatatttt ctctaacatt tttttcctta
    18781 tttatttttt aattctaacc atttttgcgc aatacgcaca gcatttgttg cagcacctac
    18841 acgaatttga tccgccacac accaaagatg gagtattttt ttatcataca catcagcacg
    18901 aattcttcct acataagttt cattagtatc gctagtcatt aagggcatag ggtatttttt
    18961 atttttagga tcatctatga caataacact tggtgctttt tctaaaattt ctttagcttt
    19021 ttttacatct atttcttttt caaaatgcat agtaatggct tcgctatgac ttcttaaaac
    19081 aggcactctt acacaagttg ccgaaacttc taaattttta tgtaaaattt tttgagtttc
    19141 attgaccatt ttaagttctt ctttagtgta atcattatcc ataaaaacat caatttgtgg
    19201 aataagatta agtgccaaag tataaggaaa agtttgaggt tcaaattcat caagtttaaa
    19261 agcaaaaaaa ctttgcatgg cttcaaccaa ttcttgcatt ccttcttttc ctgctccact
    19321 tgcagcctga taggtactta catcaacacg ctttaaatta aatgcatcat ttaaaggttt
    19381 taaaacttgc accatttgta tagtagaaca atttggatta gcaataatcc ctgttttttt
    19441 ccaatcttta atatcctcag gattgcattc aggaaccacc aaaggaacat ctttttccat
    19501 tctaaaatga cttgtattat caattacaat agcacctgat tctactgcaa atttagcata
    19561 tttttcactc acacttccac ctgcgctaaa aaaagcaata tcaataggat tttctttaaa
    19621 tacattttcg gtaagttctt tgactttata agctttgcct ttaaattcta cttcactacc
    19681 tacacttttt gcacttgcta aaggtaaaat actttccact gggaaatcaa gttcatctaa
    19741 aacatttaaa agctcttccc caaccgcacc agtagcaccc acaatggcta ttttttgttt
    19801 ttttgacatt acttatcctt tatttgatat tttttaattt tttcatttaa aatttttata
    19861 tccataccta aaatttgaga agcttgatcc ttgtcataat ctacacttaa aagaacttca
    19921 caaatcaatt ctttttctaa attctttaca tcttttttta tacttctagc ttctaagaac
    19981 aaatcttcac ttgaaatttc atcattttca cttaaaatac aagctctttg tacaacggat
    20041 attaattctc taatattacc aggaaaatca tattcaagta aagcattttt agcttcttga
    20101 ctgagctgtt tttccttaaa atcatattct ttacaagtat cttctaaaac cttttgagct
    20161 atacctaaaa tttcttcttt acgctctctt aaaggcggga tattaatagg aacagtgttt
    20221 aaacgataat ataaatctga acgaaattcg ccatttttta ttttttcatc caaatttgca
    20281 ttagttgcac tgataattct tatatctatt ttgatgcttt ttgtacttcc aagtcgcgta
    20341 atttcttttt cttgcaaagc tcttaaaagt ttggcttgaa tttcataagg catttcgcca
    20401 atttcatcta aaaataaagt gccctcatta gccatttcaa aaagccctat tttagttgca
    20461 ttagcatcag taaaagcacc tttttcaaaa ccaaaaagct cactttcaat caaatttgca
    20521 ggaatggctg ccatattaat agcaacaaaa ggcttattag agcgtttaga atgagtgtga
    20581 atataacgag aaaatacctc ttttcctact ccactctctc caaaaaacat tacagaggca
    20641 tcagttttag ccgctttttg acttaaattt aatgtttttt ctaaattagg agaagttgaa
    20701 aaaaaatctt tattttcttc ttttttttca ttttttttgc tttttttatc ggctgttttt
    20761 tctcttatga ttttagcacg cttaatagcc tcgactaaag tatcaacatc aaaaggcttg
    20821 gttaaaaaat cttttactcc caaacgaacc gcttctatag cacggcttaa agtagcattt
    20881 cctgtcataa taataaaatc atatttattt tcacaggctt taacaaattc tatgccatca
    20941 attcctggca tattaatatc tgtaataatc aaatctgtat tctcatctat tttttttaaa
    21001 gcttcagtag cagatttata agatttaata ttaaattctt catactctgc taatgcaatt
    21061 tctaaggatt tgcgcatatt aatatcatct tctactatga ctaaattcat cctaagcctt
    21121 ttaaaaaatt tctactatag tatccaattt gcgcttaatt ttgaatttac ttttttttaa
    21181 gataataaat tatcgcattt tgttcgccaa attccacggt aaaacgcaag ggtaaaattt
    21241 taacataagt ttcactttga gcacgtaata agtcagtatt aacaatatcc ttaacactga
    21301 ttctagcccc tataaagcaa tcgcttaact catctttatg agaatttaaa aaattaaatt
    21361 taattgtttt tggcatatta tcatcaatca atcctaaaga agttcgaggt aaaactttta
    21421 aatcttgatc actataagaa atttcacata cccattgttc ttcaacattt tcgctttgcg
    21481 tcattgctaa ggataaattt tgattttgat gaaagagaat gaaattttta ctagaaagct
    21541 ctgcccaaaa aataaattca tcttgggcaa aaagcttaaa gctaagaaag attaataagc
    21601 aaacaattct ttccacttgt ctgcatcgat tttaagttct aagtttaccc tataaagccc
    21661 ttgattaaaa ttctgatcaa taatacttgc attttttatc aaaccattta cttgcgcagt
    21721 aatagttgaa cttctaagca ttgcatcttt tacggtgtct ttaccattca ctttcacacc
    21781 ataaagctta cttgcaagct gtctgtaagc atctgtaatc gctgctcttt ttgctaaagc
    21841 tagggcttga gcagtagaaa ctgtattcat cggagcaatc ccttcaccaa ctgctgtaaa
    21901 actaagttcc gtttcgctag catctggagc caacattttt tcttctctga taatatcacg
    21961 cacatcatct ttatcaactt tttgcacgat aacatcttga gatggggcag tgctatttgc
    22021 acttgaattt ttagttgcac tgtttgcact tgatacacaa ccagcgaaaa ttcctgctat
    22081 tgctagcata aaataaattt ttttcatttt tacaccttca aaatattgta attagtaaaa
    22141 aataaaaagc aataagcgtt ccaactttaa aacttattac aaatctaaac caaagttttc
    22201 atcgcttaac tcatcctcat cattttcctc tttaggacac ttagcgatgc taaccacctc
    22261 gtcattttcc acattaacta caatgacacc actcgtatta cgccctgctt ttctaatgct
    22321 ttgcatatca acacgtatca tcttgcctga acttgtaaga gccatcaaat ccatagtttc
    22381 atctactata actacgctaa taagatcttt ggttttttct gtaagtttca tacaaattac
    22441 acccttacca cctctacttt gcaatctata ttctccagca tttgtgcgtt ttcctatacc
    22501 ttttgcactt atgcttaaaa tttcttgctc atcattttct ataacaactg cacctactaa
    22561 ttcgtcattt ttctctttaa acttaatagc cgtcacccca cgacttacac ggccgatttc
    22621 acgcacttta gcaagtggga atttgataca catacctttt ttggttactg caaagagcat
    22681 tttaccttgt gtgcttacac tttcttcatt ttcaagattt tcatcatcta aattttcaat
    22741 ttcttgattt tctaaatttt cttcaccacc agtggcaaaa atttcatctt catctctttg
    22801 aacaataata gcagttacca actcatcatt ttcatccaag ttgatcgctc taactcctac
    22861 acttctgata ttttgatatt cactcaaatt tgtacgcttt acaataccat ttttagtaaa
    22921 gaaacataaa gatttactct catcaaaatc cgtggttgga ataatagcca tgattttttc
    22981 ttcagcttgt aaattaataa gatttaccac tgcttttcct ttagccgttc ttgagccttc
    23041 aggaatttta taaactttaa gccaataaag ctgtccacga tctgttacaa acataagtgt
    23101 atcatgtgta tttgccgtaa agaaactttc tataaaatca tcatcataag tcgtaacggc
    23161 taattttcct tttccgcctc gtttttgctt ttcatattgt ttactaggca cacgcttaat
    23221 ataaccacga tgcgtaatag ttacaaccat attttcatta ggaatcaaat cttcaatatc
    23281 aatatcatca taatcatctt caatttgagt aatacgtggc acatcaaatt tacttctaat
    23341 ttcttttaat tcatcgcgaa ttaaattttc aagcaaggtt tcacttttta aaatttcttc
    23401 aagtcttgca atttctttca ttaattctgc aagttcattt tcgatttttt ctctttcaag
    23461 tcctgttaaa cgaccaagtt tcatatctaa aatagcattc gcttgaagct cactaagacc
    23521 aaatttagct accaaagaat ctcttgcggt attattatca gaactatttt taattaaagc
    23581 aatcacttca tctatattat caagtgcaat tttaagacct tctaaaatat gagctcttgc
    23641 tcttgccttt tgaagttcaa aaatcgttct tctaataata actgtttttc tatgggttaa
    23701 gaaaagattt aaaagttcta acaaagaaaa aattttaggt tctttattgt gaattgccaa
    23761 cataatcaca ccaaaagtac tttccatagt agtagattta aatagattgt ttaaaacaat
    23821 ttcactcata gcctcacgtt taagctctat aacaacgcgg attccttctt tattgctctc
    23881 atctcttact tcagatattc cttcaatttg cttttcttta acaagctctg caatctgctc
    23941 tataagccta gctttattgg tttgataagg aagctcatct ataacaataa catctttatt
    24001 tgtctttttt tcaatatgag ttttagcgcg cactttcacg cgaccacgcc ctgtgcgata
    24061 agcttctata ataccttttt taccataaat tattccacct gttggaaaat ctggaccttt
    24121 gataaactgc ataatctctt ctaagcttgc atctttacta tcaagcaaat ataaaagtcc
    24181 atctatcaac tcatttaaac tatgaggtgg gatgtttgtc gccataccta cagctatacc
    24241 acttgaacca tttaataata aatttggaac cctagaaggt aagacatcag gttcactttc
    24301 tgaaccatca taatttggaa taaaatcgac cgtatcttta tctatatctt ttaaaagctc
    24361 atgagaaagt ttactcattt ttgcttcagt ataacgcatc gcagcagcgc tatcaccatc
    24421 tatagatcca aagttgcctt gtcctgtaat acttggatat ctcatagaaa aatcttgagc
    24481 cattctaacc aaagcatcat aaactgctgt atctccatgt ggatgataac gacctataac
    24541 agcacccact atacgggctg atttgacaaa atctgttcta ctttttgcct catcattttg
    24601 catagcatat aaaattcttc tatgaacagg ctttaaacca tctcttgcgt caggcaaagc
    24661 acgacctata ataacactca tagaatagtc taagtaacta ccttttatag aattttctat
    24721 atctacaagt tcaatatcag aatctttgct aaaaatattc tccataaaaa tccttctatt
    24781 agttcaaagt tttgattata gcatattaaa cttttgcatc agctaaaaca agagcaaaaa
    24841 gtacagaaat tttattttct tctaaaactt ttttagcttc caaaaggcta gaaccagtcg
    24901 ttacaatatc atctactaaa attacaggtt cgtgaatggt ttttaagagt ttgtaatttc
    24961 ttttatgttt ttgacgaaat tctaaacttt ttccagaata tttaatatga ttttgtgctt
    25021 ttaaaacatt aaaaacaggt tttacaaatt ttgttttaag atatctagct aaaatagcag
    25081 aatgcgaata aagcatatct tcaaccttat catctaaagc tataacatta attgtcattc
    25141 taggatcaaa aaaatcttta aattttgcaa aacttaattt agcaagcatt ttataaacaa
    25201 aataaccata aaaataatgt ttagagtgaa gcaagtgttg tatttcatgg tatttataaa
    25261 aagaatagac tttgaaatta ttatcaagct ttcttacatt taaggaaaat tcagaaagct
    25321 ctagctcgca taattcacaa aagcagagca gagcaaaagc tccgcaattt atacacctca
    25381 aagttcagag attaaactag ctgctttatt tgccatttgt tttattaaca aatgagtata
    25441 aaaagttgtt tcttttaaat catcaaaacc ttgtacatct tgcttggtgc ggattgtaaa
    25501 tttcttattt ttatttatat cactaacttg taaaactcct actagttttg aatgtaatcc
    25561 tatagcatct tgagttgctc cataagatat aaattctaaa tcaatcttac tcacataagg
    25621 tgaattttga tcgttattgt caagcacaac tattcctcta gcttcaagtt cttgttttaa
    25681 ataagtataa aataccgcat taaaattcac atcaacaaat aactttttcc ctttagcatt
    25741 taaaaccttt tgcccttctt ttaaatcata aaatctatgt aaataaacct ttttcaaagc
    25801 aataccagtg tctaaagtgc gtttattggc acaacattga attccaacat cgctaatgta
    25861 taaaagccct ttaatctttg cttcaaaacc accaggactt tcacaagaac tgcattgaga
    25921 atttttagaa atttgattaa cttgagcaaa agtatcttgt ttagttgcac aagcactcaa
    25981 aaataaaata ggcactataa aaatcaaaaa ttttttaaac attttttctc cttagaaaat
    26041 tattttaaaa ttgtattaaa aatacaagca aatttcaagc caagttttaa atttatcatc
    26101 aatctatctt taaaacactc aaaaaagcct cttgaggtaa atttacctta cctatagctt
    26161 tcattctttt tttaccttct ttttgctttt ctaaaagctt tctttttcta gtaatatccc
    26221 caccataaca ttttgctgtc acatttttac ccatggattt aacagtttct cttgcgatga
    26281 ttttatttcc aatacttgct tgaatggcca cttcaaaaag ctgtctagga actatttctt
    26341 tcatagcact aacaagttct cttcctttac tttgcgcttt ttcattaggc acgataatgc
    26401 ttagcgcatc aacattttca cccgctacct taatatcaag ttttaccaaa tcccctactc
    26461 taaattctat aggctcataa tcaaaactcg cataaccttt tgttaaggac tttaatttat
    26521 cataaaaatc catcacaatc tcatttaaag gcacatcata ttctagcaaa acacgctcag
    26581 gtgtgatata gtccatttta acctgtactc ctcttttgcg atttaaaaga gtgattaaat
    26641 tccctaaaaa ttcacttgga gtaatgatag tagctttaac ataaggctct tttatatgat
    26701 cgattttatt aacaggagga agctcgctag gattttgaat tttaataagc tctccatcgg
    26761 tttgataaat ttcgtaagtc acagttggag ctgtagcaat caaatcaaga ttaaattctc
    26821 tctcaagcct ttctttgata acttccatat gtaaaagccc taaaaatcct accctaaaac
    26881 caaagcctaa ggccaaagaa gtttcaggct cataagtaat agaactatca ttaagcttta
    26941 atttatccaa agcatctctt aaatcttcaa atttatccgt ttctatagga taaagtcccg
    27001 caaacacaaa agctttagcc ttttcaaaac cacctatggc ttctttagct ttgtttttta
    27061 ccaaagtgat ggtatcgcct acttgtacat cacctacggt tttaagccct aaaaccacca
    27121 cacctacttc gcctgattgt aaagattgag ttttaattgg acttaaaggg tggggataaa
    27181 aaagatcttg aactatatgt tttttatccg tactcatgac taaaacttca tcgtttttag
    27241 caatacttcc ttcataaatc ctaaccaaag ccaaagcacc caaataatta tcaaaccaag
    27301 aatcataaat taaagcctta gtaggagctt catcatctgt ttttggtgca gggattttag
    27361 taataattgt ttctataagc tcttttatac ccactcctgt ttttgcactc acgcaaattg
    27421 catctttgca atctatacct ataatatgct cgatttcatg ctttactttc tcaacatcag
    27481 cattaggtaa atcgatttta ttaatcacag gaatgatttc aagattattt tcaagcgcta
    27541 tataaacatt agctatagtc tgtgcttcaa caccttgaga agcatctact acaagcaaag
    27601 ccccttcaca acttgccaaa gaacgactca cttcataaga aaaatccaca tggccaggag
    27661 tatcaataag atttaaaaca aaattttcat tattaaattt ataatttaaa cgcactgatt
    27721 gtgcttttat ggtgatacca cgctcttttt ctatatccat agtatccata acttgtgaac
    27781 tcatctgcct atcgctaata gcaccacact cactaataat cctatctgca agagtagatt
    27841 ttccatgatc tatatgagct ataatagaaa aatttctaat attttttacc gacaaaattt
    27901 catcctaaat ataaaatttt aaagctagga ttttaacaaa atttatgttt aaaacaaata
    27961 aattttattt tatataaaaa acttcaattg aaatttatat aaaacatatt aaaatatcaa
    28021 aatgtttgaa aaatatttaa aatcagctat atttttagct ctttatccct tagcaatgtt
    28081 agcttctaat ttgcacgaat ttatagcact aagtcaaaat aatgaatcct atctcattaa
    28141 gcaaatgcaa agcgaacaag caaatttaga caaagaacaa gcttttagaa attacctacc
    28201 ctctcttagt ctaaactcag cttatgtagc caacaataaa gatcgcttca ttatcgatcc
    28261 acaagaaagt ttatttgcta aagtttctct taattttttg ctttttgatg ggggtgctag
    28321 agaggctaat ttaagagctt tagaaagcag agaaaaatta agccttttag acaaagaaca
    28381 aaataaaaat taccttgccc taaatgcaat cacactttat tttaacacct taagtcttga
    28441 aaaaatttta ctagccaatc aacaaaaagt atctttttta aaatcaactt ttgaaagatt
    28501 gcaaaaattt tacgacgcag gacttagccc taaagatgaa cttgaaagca ttaaggctaa
    28561 ataccattta agcttattag agctcagtca aaatgaatta aaacttgcca atatacaaaa
    28621 agagattaaa attttaagcg atacagattt taaagtgcaa gggaatgctt ttttagaaaa
    28681 tccgcaacaa gaaaaaagtc aaaactatga agtaatgata gctaaagaac aaatcaatct
    28741 tgctaaagaa agtgtaaatt tagcaaaagc tgaatatttt ccaaaatttt atattcaaga
    28801 taattttaac ttttataaaa ataattataa tccaaaagtt ccagctcctt ttgcaaattt
    28861 agcggatcaa ttcttagaaa aatattctca aggtaatcaa tttattttag gtatggaatg
    28921 gaaaattttt gatttcaatg caagggctaa agaagttgaa aaagagcgtt taaatgttca
    28981 aatagccaat gcaaatgcaa gatttagcga gagaaaaaat aaagaagaat taaattattt
    29041 agacaaaagt ttaaaagttt tacaagaaca aattttagct cttaatctta gcttaaatgc
    29101 tgcaaattta gcttttgaaa gtgtagataa aaaataccaa gcaggacttg tttcttatgt
    29161 agaatatctt caagctttag aggctaaatt taaagcacaa agcgatttag agcttgctaa
    29221 aaatgaattt gaaattacta aagcaaatta ttattttaat gcgggtatag atcttaattc
    29281 aaaggttaaa gaatgaaaaa aattctattt ttacttcttg tttttaattg cgcctttggc
    29341 gaagaaattt acgcaagttt caatgtagaa gcatcaaaac aaagcaaact tgcccttgaa
    29401 agcataggtt tggttcaaaa aattcctgta gaaattggac aaaaagtcag caaaggagaa
    29461 cttttacttg ctcttgatca agaaagtgaa aaaatagctc ttcaaaatgc tcaaaattct
    29521 tatcaacttg cccttgtaga atacgaaaat accaaaagta ggatgcaaaa aatcaaagct
    29581 gtagaaaatg ttatagacaa acaaagctat gaagatatga aagctaagtt tgatgctgct
    29641 aatttaaatt taaacaaagc aaaaatcaat atagcttatt ataaaaatat catggcaaaa
    29701 aaagaattac gcgcacctta tgatgctatt atcgcaaaca aatttataca agtgggcgaa
    29761 ggagtaggag gagtagctca acctttaata gaaatttttt cctatccaca aagcaaactg
    29821 attttaagtt ttgatgaaaa atataaagat aaagttagat taggcgatga tttcttttat
    29881 aaaatcgatc aaaatggtac agaattgaaa ggaaaaatca gccttattta tccaagtata
    29941 gaagtaaaaa caagaaaaat ttatgctgaa gtgcaaacca caaatctaac accagggctt
    30001 tttggtgaag gtagaatcat cactaaagat taaaaatgtt taaactagct ataaaccgac
    30061 ctattaccgt gctaatgttt ttcttagctc ttatgatttt tgggctaatc tctgctttta
    30121 gcatgagtgt aaatttattt cctaatgttt ccatacctct tataaaaatc acaagcaaga
    30181 taaatgggga tttaaatttc gtagaatcaa aaatcactaa agaaatagaa aatgctttaa
    30241 gtgaaatcga tggagtaaag accataacct cagctgcata tgataatttt agtgtaagtg
    30301 tagtcgagtt taaactgggt aaaaatcttg aagtagctgc caatgatgtg cgtgataaaa
    30361 taggaacttt aagcctacct tctaagcctg aaattgaaaa aatcagttca gattctggtt
    30421 ctgctatttc actttttcta tattctaaag ataaattaca actcatgcgt gaaatcaatg
    30481 acaaaataaa accttttttg caaagagttg aaggagtagg taaaatcgaa gctaaggggt
    30541 ttttagaacc ccaaattcgc atagaattaa aaccaaacga acttagaaaa tacaatctta
    30601 acgcccttga tgtagcaaat atcatcaaaa gtcaaaattt taaacaagcc ctaggcgaac
    30661 ttaacaacaa tcaagataac tatatcatca aaggctattt tgaagccaca aatttagaag
    30721 aacttagcaa tcttcgcata aaaacaggag tatttttaag tgatattgct aatatttcaa
    30781 gcctttatga agatgaaaaa caaagtgctt tatacgaagg taaagaaggg gtgcttttag
    30841 aactcggaaa aatcacaaat tataacaccc ttgaaatgat taaaaatgtc aaaaatgcct
    30901 tgcctatttt agaaaaacaa attccaaaag atataagcat taatatgctt tatgataaaa
    30961 gcttaaatat ccacaagcac ctttctcaag tgatttttga tatggttttg gggatttttc
    31021 taacccttgt tatcgtgttt ttatttttaa gaaatttaag tgcaactctc attgcttgca
    31081 tagctatacc tacttctatc atttcaactt tttttattat cgatctttta ggctatgatt
    31141 taaaccgctt aacttttata gctttaacct taagcatagg aatttttatc gatgatgcta
    31201 tagtagtgat tgaaaatatt gctaaaaaac taaaaactta tccgccttta caagctgctt
    31261 ttttgggtat caatgaaata ggttttagcg ttttaagcat aagtatagtt ttactttgtg
    31321 tttttatccc tatttcttat atgaactcta tatcagggct ttttttcaat gccttaggca
    31381 taagcgttgc aagtgggata gttataagct ttttggtttc tgtattttta atacctagta
    31441 ttggggcaag atttttaaat ccaaaagaaa acaagtttta tgaaaaaaca gaagcttttt
    31501 ttgaaaaaat agagcaaaag ta
//
LOCUS       DARGBD010000008        31422 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.008, whole genome shotgun sequence.
ACCESSION   DARGBD010000008 DARGBD010000000
VERSION     DARGBD010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 31422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31422
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.008"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            25..99
                     /locus_tag="SFZ04_000298"
     tRNA            25..99
                     /locus_tag="SFZ04_000298"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:58..60,aa:Glu,seq:ttc)
     gene            complement(235..417)
                     /locus_tag="SFZ04_000299"
     CDS             complement(235..417)
                     /locus_tag="SFZ04_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064610.1"
                     /translation="MKKVVLISALLGAFAANVFAANTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTTAQ"
     gene            680..1342
                     /gene="sodB"
                     /locus_tag="SFZ04_000300"
     CDS             680..1342
                     /gene="sodB"
                     /locus_tag="SFZ04_000300"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HEG8064611.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
     gene            1411..2101
                     /locus_tag="SFZ04_000301"
                     /pseudo
     CDS             1411..2101
                     /locus_tag="SFZ04_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881173.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(2114..3319)
                     /locus_tag="SFZ04_000302"
     CDS             complement(2114..3319)
                     /locus_tag="SFZ04_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HEG8064612.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     TFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDKFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(3355..4263)
                     /locus_tag="SFZ04_000303"
     CDS             complement(3355..4263)
                     /locus_tag="SFZ04_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8064613.1"
                     /translation="MMLEIKNLSKNFEKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCQLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            complement(4247..5863)
                     /locus_tag="SFZ04_000304"
     CDS             complement(4247..5863)
                     /locus_tag="SFZ04_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG8064614.1"
                     /translation="MYKTLQYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSNLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRMDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYSKIHLNIDEASLNLRASYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            complement(5863..6867)
                     /locus_tag="SFZ04_000305"
     CDS             complement(5863..6867)
                     /locus_tag="SFZ04_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8064615.1"
                     /translation="MKKIFFMFLTAVSFLGASELNIYSARHYNADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            complement(6864..6995)
                     /locus_tag="SFZ04_000306"
     CDS             complement(6864..6995)
                     /locus_tag="SFZ04_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG8064616.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQLKDKI"
     gene            7217..8069
                     /locus_tag="SFZ04_000307"
                     /pseudo
     CDS             7217..8069
                     /locus_tag="SFZ04_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
     gene            8066..10333
                     /locus_tag="SFZ04_000308"
     CDS             8066..10333
                     /locus_tag="SFZ04_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG8064617.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTREGIGSDTQSIDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHGFNLNTRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELFTPFVSFARTNRAPNVQEMFFSNNEGNGINPFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKIPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            10346..11107
                     /locus_tag="SFZ04_000309"
     CDS             10346..11107
                     /locus_tag="SFZ04_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8064618.1"
                     /translation="MLKKIFLFCFLLLNLNAEVNVTDTNLSFDSPKIEAEVPKIELSL
                     SSLYQNADEVVKGVIYILVLFSVLAWAVFISKLMQFYFMKKNLDFSIHKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            11094..11504
                     /locus_tag="SFZ04_000310"
     CDS             11094..11504
                     /locus_tag="SFZ04_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEG8064619.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            11506..12252
                     /locus_tag="SFZ04_000311"
     CDS             11506..12252
                     /locus_tag="SFZ04_000311"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG8064620.1"
                     /translation="MKSSVIFGFVLSLILHALVLMFFLFSFYTQEKSSGVDFKQGLEF
                     TSIMMVSELPIGELKEVSIDQKKSNSQDKNKKQDERISLNSQDKNAVLKVQKKIEKQD
                     ENQAQKEVANASENSKFKNESFSAPLQSNEDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEVLSLFKRASPLP
                     KPPKEMLKDGEKISFVMPIDYNIKDYLGKK"
     gene            12308..13507
                     /locus_tag="SFZ04_000312"
     CDS             12308..13507
                     /locus_tag="SFZ04_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HEG8064621.1"
                     /translation="MFSSFFASKKWALWAYLGLFLLLFFLYMQTSLNVAINSWYSDFY
                     NVLQKPKIELLDSNTTQKAEEKFENNASLIQEANQKAQENFQKANFINKGALYYYQSL
                     LEYFFNSRAMIEKESYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREAMT
                     FSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIRALMTLVAFIPILWTLSD
                     VVSKALFANLSENSSFYFLKNIDGLLVYVALLISLGGLIVSWFVGIKLPGLEYNNQKA
                     EAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMIVI
                     VPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKEFE
                     KNISYKS"
     gene            13606..14964
                     /locus_tag="SFZ04_000313"
     CDS             13606..14964
                     /locus_tag="SFZ04_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEG8064622.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSMLMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(14977..16161)
                     /locus_tag="SFZ04_000314"
     CDS             complement(14977..16161)
                     /locus_tag="SFZ04_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEG8064623.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(16171..16380)
                     /locus_tag="SFZ04_000315"
     CDS             complement(16171..16380)
                     /locus_tag="SFZ04_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEG8064624.1"
                     /translation="MAKDTNGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            complement(16373..17092)
                     /locus_tag="SFZ04_000316"
     CDS             complement(16373..17092)
                     /locus_tag="SFZ04_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEG8064625.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            complement(17164..17730)
                     /gene="purN"
                     /locus_tag="SFZ04_000317"
     CDS             complement(17164..17730)
                     /gene="purN"
                     /locus_tag="SFZ04_000317"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEG8064626.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            complement(17721..19091)
                     /locus_tag="SFZ04_000318"
     CDS             complement(17721..19091)
                     /locus_tag="SFZ04_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HEG8064627.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITLCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDEDLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            complement(19075..19773)
                     /locus_tag="SFZ04_000319"
     CDS             complement(19075..19773)
                     /locus_tag="SFZ04_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEG8064628.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            complement(19775..21280)
                     /locus_tag="SFZ04_000320"
     CDS             complement(19775..21280)
                     /locus_tag="SFZ04_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEG8064629.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLNEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            complement(21277..21804)
                     /locus_tag="SFZ04_000321"
     CDS             complement(21277..21804)
                     /locus_tag="SFZ04_000321"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEG8064630.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            complement(21840..22424)
                     /gene="clpP"
                     /locus_tag="SFZ04_000322"
     CDS             complement(21840..22424)
                     /gene="clpP"
                     /locus_tag="SFZ04_000322"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEG8064631.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            complement(22424..23758)
                     /locus_tag="SFZ04_000323"
     CDS             complement(22424..23758)
                     /locus_tag="SFZ04_000323"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEG8064632.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RLGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            23901..24473
                     /gene="folE"
                     /locus_tag="SFZ04_000324"
     CDS             23901..24473
                     /gene="folE"
                     /locus_tag="SFZ04_000324"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEG8064633.1"
                     /translation="MQKKFEDCVKTILEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKDILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGIQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            24473..25858
                     /gene="fliI"
                     /locus_tag="SFZ04_000325"
     CDS             24473..25858
                     /gene="fliI"
                     /locus_tag="SFZ04_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEG8064634.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEVTKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPVNIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDAPNTPLLPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(25861..27198)
                     /locus_tag="SFZ04_000326"
     CDS             complement(25861..27198)
                     /locus_tag="SFZ04_000326"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEG8064635.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYIVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(27200..27928)
                     /locus_tag="SFZ04_000327"
     CDS             complement(27200..27928)
                     /locus_tag="SFZ04_000327"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEG8064636.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTIPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            complement(27991..29172)
                     /locus_tag="SFZ04_000328"
     CDS             complement(27991..29172)
                     /locus_tag="SFZ04_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8064637.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLNEKHISLENLKKLRNTINSEGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDIGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            complement(29172..30299)
                     /locus_tag="SFZ04_000329"
     CDS             complement(29172..30299)
                     /locus_tag="SFZ04_000329"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064638.1"
                     /translation="MKKWIFIVFCFILGFIIHIFYIGYTNELLFNKFIKNSNPDYTIT
                     DIYFKKGFLTSKGSFTLNHSHTQLSTKIDLKFNNYFLLNKIIKGNFTNPFDFLDKVLK
                     NNKLGTFTLKLHDNNSKIFLNIKDINLSNEGGDTIINGGYIEALMNKNLEIKNIKIHF
                     DMINFSQFYTKFVLQNLNYEQFFNNPVQFYELNLFSKSQQQINFDYLVLDNNKINSFY
                     SKNLVNFNEENSTINLNIQGKSNEIDIDLKSLLGQNLNFDKTKFNITINKFLNSNFNI
                     SHFIQKNLDLEIQNLILEKNKQNISLQGNLNINNSYQAKLQVISSDEPDEIFPWTKDY
                     GGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSNMDLN"
     gene            complement(30434..30781)
                     /locus_tag="SFZ04_000330"
     CDS             complement(30434..30781)
                     /locus_tag="SFZ04_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064639.1"
                     /translation="MKKSILFTSALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGIPATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            complement(30880..31405)
                     /locus_tag="SFZ04_000331"
                     /pseudo
     CDS             complement(30880..31405)
                     /locus_tag="SFZ04_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864190.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT        10764 a         4900 c         4542 g        11216 t
ORIGIN      
        1 ttttattttt tactccttaa aagtggccca ttcgtctagc ggttaggaca tcgccctttc
       61 acggcggtaa cacgagttcg agtctcgtat gggtcaccac tttttaattt ttcttttaaa
      121 ataacaattt tttcattttt tctattgaaa tttaataaat attaataatt tattttgtag
      181 aatacgaata gcttttgata taagtctatt atagacttat atcaaggctg ggcattattg
      241 agctgttgtt tgctcttttg tttttttgtg agttttagct tcatgttttt tatcagcttt
      301 agcttttgaa tgatgagctt ttgtatgtgt ttgattcaca tcgcttggag tattagctgc
      361 aaaaacatta gctgcgaaag cacctagtaa tgctgagatt agtacaactt ttttcatatt
      421 ttcctcctta tgaataattt ttagttgcaa attaattgta attattaaaa atcaacaaat
      481 agatattttt tgtaaaaata tttcaaaaaa atataatttt tatatatatt taaattatta
      541 ttaaaatata ttataaatgt atcttatttt aggttaaata aatagaaatt ttacccacta
      601 agcttttaag atatttttac tctttttaat attattatgg taatattttc aatatcaaac
      661 taaaaataaa ggagaaatta tgtttgaatt aagaaaatta ccttatgata ccaatgcttt
      721 tggtgatttt ttgagtgctg aaacttttag ctatcatcat ggaaaacatc acaatactta
      781 tgttacaaat ctaaataatc ttattaaaga tactgaattt gcaggtaaag atcttgtaag
      841 tattatcaaa acttcaaatg ggggcgtatt taataacgca gctcaagttt ataatcatga
      901 tttttatttt gattgcatta agccaagtac aggctgtggc tgtggcggtt catgtcaaag
      961 tatagatgct aatttacaag cggcactaga aaaagaattt ggatctttag aaaatttcaa
     1021 agctgaattt atcaaaggcg ctacaggagt ttttggttca ggatggtttt ggttagttta
     1081 taatactaaa aatcaaaaac tagaatttgt aggtacttca aacgcagcta caccaattac
     1141 tgaagataaa gttcctttac ttgttgtaga tgtttgggaa catgcttatt atgtagatca
     1201 tcgtaatgca cgccctgctt atttagaaaa attctatgct catattaact gggaatttgt
     1261 tgcaaaagct tacgaatggg ctttaaaaga aggcatggga tcagttagct tttatgcaaa
     1321 tgaacttcac cctgtaaaat aactttaatc ctttttgtgc tagaatggat tttgacatta
     1381 agtcaacatt ctacacaaaa aggggcaaaa atggataatt ctttatctgc atatactcaa
     1441 aaatatgaca aagaaggtta tggacttcaa tatcctgatg gtcatgttat aagattttac
     1501 gagagaatct taaaatacaa actaagcaaa acaagtggaa aattacttga ttttggttgt
     1561 ggaaatggag tgcattctaa gtattttaaa aatataaccg ggggggggta tagagcctta
     1621 tggcattgat atagttccta gtttaaaaaa agtttgggaa aaagatcctt gcttagattc
     1681 taaaaatttt cacatcatat ctcctaattc tagctttaaa aaactcttca atacaaaaat
     1741 ggattttata tttgcaaatc aaagcttata ttatcttaca aaacaagctt ttaaagaagc
     1801 tgtgcaagaa ttttatgaac tatgcaatga aggagctatt atatttgcaa ccatgatgag
     1861 cgataaaggc tatagtatgt atgaaagagg agaacttatg gataatagct tgcgtgaagt
     1921 aaaaggatgt ccaagtggta gattgagtgg ttcttcatat atacgcttta ctaaagacat
     1981 agaagaatta aaagaagatt ttaaaccttt taaaccttta ttttggggag attatgaatt
     2041 aattaatctg tataattttg aaggcagtgt ggagcacttt atttatatag gacaaaagta
     2101 agtgctctag cacttactct cctaagcttg gagtcatttc gataatcttc caaggaagtc
     2161 cttgagaatt cagctcttcc ataaaaggct tagcgtcaaa ttcttccata ttaaacacgc
     2221 cttttccttg ccaaattcct ttagcgatta atttcgtacc tatcatagca ggaacacctg
     2281 tagtatagct cacagcttgc gcgccagttt ctttgtaaca ttcttcatga ttgcaaacat
     2341 tataaatata aacttgtttg tcttttccat cttttttacc acgaatcaca caacctatat
     2401 tggtataacc tttagtgcgt ggtcctaaac ttgcaggatc aggaagcaag gtttttaaaa
     2461 attctatagg aatgatttct ttaccttggt gtatcacagg tttaatccct agcattccaa
     2521 cattttcaag acatttcatg tgagttaaat aactttgtcc aaaagtcata aaaaagcgta
     2581 ttctttttaa acctttgata ttttttacca agctttcaag ttcttcatga taaagcaaat
     2641 agctatcttt cactcctact tctggataat cccactccat ttttatttcc ataggctgcg
     2701 tttctatcca cttgccattt tcccaataac gccctttagc agaaacctca cgcagattga
     2761 tttcagggtt aaaattcgtc gcaaaagcat agccatgatc acctgcattg caatctaaaa
     2821 tatctatata agaaatttca tcaaataaat tttgctgtgc ataagcacaa aaaacattag
     2881 ttacaccagg atcaaatcca cttcctaaaa gtcctaaaat tcctgcttgt ttaaacttat
     2941 catttctcgc ccattgctct ttgtattcaa atttagctaa atcaggatgt tcataatttg
     3001 ccgtatctat ataatcaatc cctgctttta tacaagcatc cattaaactc aaatcttgat
     3061 aaggcaaagc aacattgagt aaaatttgcg ctcctgtttt cttgataagt tctacaaccg
     3121 cattgctatc atcagcatca atttgcgctg tttcaatttg aacccctaaa cgctctttga
     3181 taaaagtagc gatttcatca catttgcttt ttgttctact agctaaagtg attttgctaa
     3241 aagtatcaga attcattgcg cattttacag tagccacacg acttactcca cctgcgccta
     3301 tgattaaaag atttttcatg aaatttgtcc ttaaaagatt tttaggaatt ttaactaaaa
     3361 attgataata tcaaaattta ttttttcttc taagttataa tttgagctta ataacataaa
     3421 aaattctata tttttatatc ttaacttaag tctataaaaa gcccctaaaa attctttttg
     3481 taaaatttta gcctcaaagc gatttcctat tttaagttct gcataaccaa aaatataatt
     3541 ttttgaagct atccaagcaa aaaattcatc ttctaaatca agtttttctt ctatgatatt
     3601 taaatcaggt aaaatttgcg cacttttaaa atcgggctta aaataaagct ctttaggatt
     3661 tgcatgagct aaaatttttc ctttttctaa aaaagcgatt tgatcagaca tacaataagc
     3721 atcttcaata tcatgagtta ccataatagc cgtaatgcct tgattttcta tcattttttt
     3781 caattctctt cttaaatcct gttttaaatt ttgatccaaa ttagaaaaag gttcatctaa
     3841 aagcaaaagc tgacatcctc ttgctatagc tctagcaaaa gccactcttt gcgcttgccc
     3901 tcctgaaatt tcatcgattt ttttatatct taaatcttca atttcaaaag ttttaagcaa
     3961 atgatttaaa atttgatttt tatctttttt atcgtaaagt gcaaaaagta tgtttttctc
     4021 aacatttaaa tgaggaaata aagcataatt ttgaaacatc aaagccactt cacctttgca
     4081 agaaaacaaa tcataagaac tagcttgttc aagcttagca ataatcctta aaagcgtgct
     4141 ttttccactt ccactacctc ctaaaatgct taaaaattct ccttctttga catgaagatt
     4201 gatattttct aaagcttgta ttttttcaaa atttttagat aaatttttaa tttctaacat
     4261 catctttcct tgtgatttta tccatccaaa caacaaccat taaagaaaga aaaacgataa
     4321 acaaggaagg caaagctgca tcataaattc tttcatcact tgcaaaccag aaagctttaa
     4381 cacttaaagt ttcaaagcca aaaggcgcta aaattctact taaaggaagt tctttaatcg
     4441 tatcaataaa aacaataata aaagccaaaa ataaaaaatg tttcattaaa ggtgtgtgaa
     4501 ttttaaaaaa taaaataaaa taactcgctc ttaaatttaa acttgcctca tcaatattta
     4561 gatgaatttt actatatcct ccttctaaag aataaattgc actcgctaaa aaacgaatta
     4621 tataagcaaa aacaagaaca agtaaagaat ttcccaataa actcatgtga aaaaatttat
     4681 ccaaaaatac aaaaagcact ataatgctaa tccctaaagc agcagcaggt atagaataac
     4741 ccaaagaact tatttttaaa ataaataaat taaaaaaatg atttttaact atcctagagc
     4801 taaacatcaa aaaataagct aaaaaagtgg taattaaagc agtgattaaa gctaagatta
     4861 tagtttgaaa actgataata taaaattgcg attcaaaaag cttatgatct tttagccccc
     4921 aataaactag ccaaataaaa ggtaaaataa aacctacaaa agcaatcata aaacaataaa
     4981 tacaggatag aatttgttta ataggattta attttctttt tttgataaaa agagctaaat
     5041 tttgattaaa actataatga tgtttatttt tataataata atccacatac ataatcaaaa
     5101 atacaaaaag cattaaaata cccgataaaa cactagaaga ataagaatca ttcaaatcat
     5161 accagagttt aaaaattcca gccgaaaaag tatccactcc caaataagca cttgcgccat
     5221 aatcacttaa agtttccatt aaaaccaata aagctccaga aaaaatggca ggccttgcgc
     5281 tcaaaagtgc cacgcgtgta aaaattctaa attcagaata tttcatgatt ttagctactt
     5341 cataagcctc tttggcttca cttttaaaag ctgttttagc aaataaataa atataaggat
     5401 ataaagaaat agccaaaaca aaaataacac cataatgatt gaaaaaatcc atcctaaagc
     5461 caaaattttc atgaaaaaat ccttgaaaat ccataattcc aacataaaca aaggctaaaa
     5521 tataagcagg tatggccaag ggtaaaatga gtaatttttc taaaatttta cagaaataaa
     5581 aatcataatt tgcgatcaaa taagcagaac ttacacccaa aatcaagctt aaacacaata
     5641 ctcccacgct aattataaaa gtatctttga tgaattttaa aaataaataa tcaaaaaaat
     5701 gactcaaatt ttctttaata gatgaaaatt gggttaaatt acttgtatta aaattttgaa
     5761 ataaaatata aaaaagttca gcaaaaatac caaaaatagg caaagcaaga aaaagggcaa
     5821 gtaaaattgc cccgagttta tagtattgta gggttttata cattatctaa aaccgacttc
     5881 atcgtaaatt ttaacagctt ctttaatatt ttctgctatc ttactcacag ggatttgatc
     5941 ttctttgaaa gttccaaaat cttttacagt ttggcttaat tctacatcat ttcttatagg
     6001 aaattcataa ttactatcag taagaatttt ttgaatttca ggacttaaca taaattccat
     6061 aaatttttta gccgcatctt gatttttact tgattttgtc atagcaatac cgctaatgtt
     6121 aatatgcgtt cctctattgt cttgattagg aaaaataata cccaaagaat tccccacttc
     6181 tacatctttt ggatttttag aattctttaa aagccctata taataagtat tcataactgc
     6241 aaatttagct tcgcctgcaa atacttgtct agcttgatct ctatctccac cctttggatt
     6301 tgtcgcaaga ttttcaagca cacctttagc ccatgcttta gcctctttat ttccgtcatt
     6361 agctataata gatgctaaaa gagttttact ataaggagct gtagcacttc tcataacaat
     6421 ttctccttta aattcagctt ttgctaaatc ttcataattt ttcattttgc taatatcgat
     6481 atttgcgttt ttgttgtaag caataattct tgctcttttt gtaatcgcaa accattcttt
     6541 atccttatct cttaaatgag caggtataaa ttcttctaaa tattttgatg aaacagggga
     6601 taaaagtcct aaatttttag cttctgtaag atttgaaata tcagctgtga tgaaaatatc
     6661 agcaggagaa ttacttcctt caagagaaag tcttttaata agttctgaag ctttagcttg
     6721 agtatgattg accttaatac ctgttttttc ttcgaatttt tttatgattt caaaatcagc
     6781 attataatgt cttgctgagt aaatattaag ctcactagca cctaaaaatg aaacagccgt
     6841 taaaaacata aagaagattt ttttcatatt ttatccttta attgagaatt atactcggtt
     6901 ttattaagat ctttaaaatc ggtatgagaa tgttcagagc aagcaaaagc aaagccaacg
     6961 catagtaaaa ataaaattat ttttttcata gacattaatt ccttttagat attttgataa
     7021 gaaatattaa tattaaaaag taaatataaa gtaacttaat aattttataa ctgataaata
     7081 ttttcatttt attataataa attttgataa taattataaa taattaaatt ttaatataaa
     7141 tatttaatag tatttttata tataaaatat taatattcaa tatcaaaaat aaaccactaa
     7201 gaaagtaaca ataataatga aattttatac tattttaagc attctattta taagctttat
     7261 gttgagcgct tgtgctgttt tgcaaaaatc atctccactt caagaaaata aagattttta
     7321 tatacttgat acgcatactc aaaaaaagat ttcttttgaa gatatgattt tagaattgct
     7381 aaaagcagat gtgatactgc ttggcgaaaa acacgatgag gttaaacata agataagtca
     7441 agttatgatt tttaatgcct tagaaggaaa tttaagttct caaaatataa actttgatgt
     7501 agctttagaa atgttagcaa gcacagagca aaatcactta gataaagctt ttaaaaataa
     7561 aaaaaaccat taaagccaat gaacttacta atgcattaaa ttgggataag gtctggaaat
     7621 ggaaagatta tgagcaattt gtcaatgtgg ttttttattc aaagtcaaaa atattaggtg
     7681 caaatctttc acgctcagaa attacaagta tttataatgg ggctcagccc ttaaagggtt
     7741 atgtttcaac cacaaatgaa gtaaaaaaac aactttttga cattatatcc ttaagccata
     7801 agctaaatcc tgaagaaaat aaagaattac tagataaatt ggtggaaatt caacaattca
     7861 aagacaggcg tatggctgat gtattggttc atcatgtaaa taaagtttta ttgctagctg
     7921 gaagctatca tacaagtaaa aaaataggaa ttcctttaca tatacaagat tttaaaagca
     7981 gtaaaaaaat agttgtagtg aatttaagct atggagaaat agatttaaaa gacagtgatt
     8041 atgttttgat ttataagggg gaggaatgaa aaaattaagt ttattttgtg ctgtaggttt
     8101 atgttttgct agttttgctt tttctgaaga attagaattt gatagtcttg aaatttcagg
     8161 ttcaaaaatc aaaaacgatg aaaaaccttt tgtaactcct ggagcaacaa gcacaagaga
     8221 gggtataggt tcagatacgc aaagtataga ttctatagtg cgtagtatac ctggaaccta
     8281 cacaaacaca gatcaagctc aaggtacagt tcaagtaaat attcgtggta tgagtggttt
     8341 tgggcgtgtt aataccatga ttgacggtgt tactcaaact ttttatggta gtgcatcaga
     8401 tgatccagct agatttcatt cacaaacggg aacttcagct tttggagctg ttattgatac
     8461 aaatttctta atcggagttg atgttacaag gggaactttt gaaggagtag gtggagcaaa
     8521 tgccttgatg ggatcagcaa attttaagac cataggtata aatgatattg tacatgatgg
     8581 caatatcttt ggatttttag gacgattttc ttatggaagc aatggaatcg gaccaagtta
     8641 tatgagtgca gtggctggaa agactgaact tgaaaataat ggatatgtgg gcgcgctttt
     8701 tggttatagc gcaaagagaa ttactcaaaa ttacactgta ggcgggggtg gcaagatagg
     8761 tagtagtatg gttgatactg atggagatgg tatagctgat accaatatcg ctccttttga
     8821 tccagatttt ttaacccaaa aaccaaactc tcaacttttt aaactcgaat atgtcccaaa
     8881 ttcttttaca aacactatat tttcttatcg tagatatcaa aacgaacttg ccggtagaaa
     8941 aatacacaat gacaattatc aacttgattt ttggcacaac cctaatgagt ggcttaatgt
     9001 aaatacgctt attgcctaca atcaaggcat acaaacctat ggatcaaaat ctacttttgc
     9061 ggcaaacgat gccatagcta acacaaaggc aaaaaatact gccactactt ttgatataag
     9121 tgatacttta gagggtgaat ggcatggatt taatctaaac acacgctttg gagcaaatat
     9181 tttgcttaat gattataaaa ataccttaaa tacatcaatt caaggagtaa attctatacc
     9241 ttttcagcct cgtggaaaac aaaatctttt tacttattat cttgataata gtctaaatta
     9301 tggtatcttt acacttgata ctaatgtgaa tcttttagat tggaatatca aaggacacag
     9361 acctgcttgc gatgaagtaa attttatgtg ttttccaaaa gcggcgacag atatagataa
     9421 aaatggactt cgcttgaatg cttctgtcat gctttcagct gccatacacg agctttttac
     9481 accctttgta agttttgcga gaacaaatag agcccctaat gtgcaagaaa tgtttttctc
     9541 aaataacgaa ggcaatggta tcaatccttt cttaaaacca gaacaagcca atacttggca
     9601 aataggtttt aattctttta aacatggact tttaaaagat gatgatcgct ttggttttaa
     9661 agccgtgtat tatcatacaa aaataaaaga ttatatttat aatgaacaat tttatcttga
     9721 agatccaagt aaaattcctc caagctcgca attttatatg cacttaaatt cagctgatga
     9781 tactatattt aagggtgtgg agttagaatt aagctatgac ttgggttttg cttatgctaa
     9841 agctatgtat tcaagacaag atacaagttc gactatttct caaacttcag gacctcttct
     9901 tggctctttt tcggcaagta aaatcatgga gcttccaaaa gattatgcaa atgtagagct
     9961 tggctttagg ctaaatgaca aaataagctt tggtggtata gcaaaataca caggcaaagc
    10021 aaaaagggta aatccaaata cagatgattg gaataaggat ccaaacaatc cttattatcc
    10081 taaaccaacc acacaagact taccaaaaat tcctattata gtagatttat attggaatat
    10141 agaatggttt aaaaacctca caatgagagc agaggtgcaa aatttatttg ataaaaacta
    10201 catggatgcc ttaaatgctt ataattcctt agataatcag cttcaatata atggagcagg
    10261 tgatcctatc tatcttttta gcaattctgc tcgcggtcgc acctttatag taagttttga
    10321 atataaatat taaggaaata tataaatgct aaaaaaaata tttttatttt gttttttatt
    10381 gttaaattta aatgctgaag tgaatgtaac agatacaaat ttatcttttg attctcctaa
    10441 aatagaagcc gaagtaccaa aaatagagct ttctctttct agtctttatc aaaacgctga
    10501 tgaggtggta aaaggtgtta tttatatatt ggttttattt tctgttttag catgggcggt
    10561 ttttatttct aagcttatgc aattttattt tatgaagaaa aatttagact tctctataca
    10621 caagataaaa gaattaaaaa atctcaatga attagatcag acaaaggatt ttgcaggtgt
    10681 tttatcttta gaaattcaag atgagcttga aaaaagtgaa tataaaaatg atcacataaa
    10741 agagcgtata gaattgcgtt tgcaaaatac catctcaaag caaatcacag caagcaaaaa
    10801 tggcttgagc ttgcttgcga gtataggtgc tagcgcacct tttatagggc tttttggaac
    10861 agtttgggga attatgaatg catttatagg tatagcaaat cttggcaatg cttctttggc
    10921 agtcgttgcg cctggtatag ctgaagcctt gtttgctaca gcttttggct tgatagctgc
    10981 tatccctgcg gtgctttttt ataattatct tacaagaaaa aatttaaaac ttatgcacca
    11041 tttagatgag cttgcaaatt ttgtctatat actttttcat aggagttatt ttaatgataa
    11101 aaactgaaat ggctcacaaa gaagaggagt taagtgagat caatataact ccttttatag
    11161 atattatgct tgtattattg attgttttta tggctgttac tcctcttatc acaagttcta
    11221 tcaaaataga attacccaag agttcgcagc aagcagagga taagcttaaa aatcccatca
    11281 tactttattt aaatactgat aatactttgg ctattaatga tgataaatta agcctagaaa
    11341 atctttcaag tgctttagat ataaaaacca aaggcaataa agaagaaatt atttattttc
    11401 atatcgataa aagtgtaaag tatgaagata ttatgcaagt aatgcaaaaa ttaaaagaga
    11461 atggctatgg aaaaatagct ctttcaagta aaaagatgga ttagtatgaa gtctagtgtg
    11521 atttttgggt ttgtgttaag tttgatatta catgctttag tattaatgtt tttccttttt
    11581 tctttttata ctcaagaaaa atcaagtggt gttgatttta aacaaggatt agaatttact
    11641 tccattatga tggtatcaga gcttcctatc ggggaattaa aagaagtttc gatcgatcaa
    11701 aaaaagagta attctcaaga taaaaacaaa aaacaagacg aaagaataag tcttaattct
    11761 caagataaaa atgctgtatt aaaagttcaa aaaaagattg aaaagcaaga tgaaaaccaa
    11821 gctcaaaaag aagtagctaa tgcaagtgaa aattcaaaat ttaaaaatga atcgttcagt
    11881 gctccgctac aaagtaatga agataaaaca caaactatag taagtggcaa tgccaaagaa
    11941 caagttaaaa gctatcaagc tttgcttatg gctcatttga ctaaatttaa aaaatatcct
    12001 caagaagcga taatgcaaaa acaagaaggc gttgtaagaa ttcgcgtaag cattgatgaa
    12061 agcggaaatg tcttaagcaa agagcttaaa aaatcttgcc cttatgcagc gctcaatgat
    12121 gaagttttaa gtttatttaa aagagcttct ccattgccaa aaccgcctaa agaaatgttg
    12181 aaagatggtg aaaaaattag ttttgttatg cctattgatt acaatattaa agactattta
    12241 ggtaaaaaat aaactcttga ttaaataaaa ttgattaaaa ttttcgtttt gagattaagg
    12301 cggtggtatg ttttcttcgt tttttgcaag taaaaaatgg gctttatggg cttatttggg
    12361 gctttttttg cttttatttt tcttatatat gcaaacaagc ttaaatgttg cgatcaattc
    12421 atggtatagt gatttttata atgttttaca aaaaccaaaa atagagcttt tagattctaa
    12481 tacaacgcaa aaggcggaag agaaatttga aaacaatgca agtttaatcc aagaggccaa
    12541 tcaaaaagca caagaaaatt tccaaaaagc taattttatc aataaaggcg cactttatta
    12601 ttatcaaagt ttattggaat atttttttaa ttctagggct atgattgaaa aagaaagcta
    12661 ttctgcgagt gatttttatg ctttgatttt agtattttta gctattgcta ttccttatgt
    12721 tttaattgca acgattaata tttattttgc tagtgtttac gcctttaagt ggcgtgaagc
    12781 tatgactttt tcttatttga aattttggaa aaataaagat gataacatag aaggaagttc
    12841 gcaaagaatt caagaagata cttataattt ttctaaaatt gtagaaagct taggacttag
    12901 ttttataaga gctttaatga ctcttgtagc ttttataccg attttatgga ctttaagcga
    12961 tgttgtaagc aaggctttat ttgcaaattt aagtgagaat tctagctttt attttttaaa
    13021 aaacatcgat ggtttgcttg tttatgttgc acttttgatt tctttaggag gattaatcgt
    13081 atcgtggttt gtaggaatta aacttccagg acttgaatac aacaatcaaa aagccgaagc
    13141 agcttttaga aaagagcttg tttatgctga agataaccgc aaagaatacg ctaaaaatga
    13201 gactatgata gagcttttta cagggcttaa atttaactat aaaagacttt ttttacatta
    13261 tggatatttt aatatttggc tcattttatt tgagcaaatg atagttatag tgccattttt
    13321 aatcatggca ccagggcttt ttgctggagc tataggactt ggtattgtaa tgcagattaa
    13381 taatgcattt gatcaagtgc gaagctcttt tagtgttttt atcacaaact ggacaactat
    13441 cactcaactt agaagtatat ataagcgttt aaaagaattt gagaaaaata tttcttataa
    13501 gtcttagttt tttcttataa aatacaagaa aaaattcaaa tattaaattt acttttaatt
    13561 gtgtataata aggtttaata atattttatt tcttaaggag cttcattgga ccccagtcag
    13621 gttttggatt taaaccaaac ttctacagca tcttttgatg caggatattc tatgcttatg
    13681 gttgttgttg cacttgctct agtgttttta aatggttttt ttgttttgtc tgaatttagt
    13741 attgttaaag tacgtcgttc caagcttgaa gagatggtaa aagaaaaaaa agctggtgcc
    13801 aagaaagctt tggaggttac ttcaaggctt gatacatatc ttagtgcttg tcaattagga
    13861 attactttaa gttctctagc tcttggttgg ataggtgagc ctgctattgc aaaaatgcta
    13921 gaaattccgc ttattaatct tggttttagc actgttatta tccatactat agctttcatt
    13981 attgctttta gcattattac tcttttacat gtggttttag gagaacttgt gccaaaaagt
    14041 atagctattg cagttgcaga taaagcggtt ttatttatag ctagaccgct tcattggttt
    14101 tggatgctct ttttgccttg tattaaaatt ttcgattttt tagcagctat aagtttgaaa
    14161 ctttttggaa taaaacctgc taaagaaagc gagctaactc atagcgaaga agaaattaaa
    14221 atcatagcaa gtgagagtca aaaaggtgga gttttagatg aatttgaaac agagatcata
    14281 cgcaatgctg ttgatttttc agatactgtt gctaaagaga ttatgactcc tagaaaagat
    14341 atgatttgtc taaataaaca aaaaagttac gaagaaaata tgcaaatcat ttgtgagcat
    14401 aaacatactc gctttcctta tattgatggc tctaaagata ctattttagg tatgatacac
    14461 atacgagata taatacaaaa tgaattaaac cataaaagtc aaaatttaga tacttttgtt
    14521 aaacctttga ttttggttcc tgaaaatatc agcatttcaa aagtacttgt aatgatgaat
    14581 aaagaacgct ctcatactgc attagtagtt gatgagtatg gtggaactgc tggaatttta
    14641 accatggaag atatcatgga agaaattatt ggcgaaatta aaagcgagca tgaagaagac
    14701 agctataaaa aacttgctga aaatatctat gaatttcaag gacgatgcga tatagaaact
    14761 gttgaagaaa tgcttgtaat aaactatgat gaggatttag aacaagttac tataggtggt
    14821 tatgtattta atcttttagg acgcttgcct atggtaggag atcgcattga agatgaactt
    14881 tgttactatg aagttaaaaa aatggatggg aattctatag agcgtgttaa ggtggttaaa
    14941 aaaacaaata aagatgaaga ataagcctct ttaggcttat ttctttttgt aaatttggtt
    15001 tttaatttct atacactcaa aacctttttc atctagtgta actacgcgta aatatccacc
    15061 atcatctatt ttaccctcgc ataaaaatac tcttttggct attttcatag gaagtttttc
    15121 tttatttctg tgtccaaaga tttgataaag attgtccgag gtgaaattac aaaattgatt
    15181 tgctactttt tgactgtctt catatccacc tacaccataa ataaagtcat ggcttggtat
    15241 aaaacttatt ttttcaggtt tggagggtat aaaatttact cctccatgtg aacaaaatat
    15301 gaatttattt tggaatttgt agtataaaca ttcttttaga tgaggataga gttttctagc
    15361 atctcttgga gtaagttttt cttttctaaa atcctttaaa gtattttcat taaattcttt
    15421 ggaatttgac aattctccat tagcccattt tataagatgt ctttcgtgat ttccttctaa
    15481 taagcatacg ttttcttttt cgcaaatttt taaaagaaat tttattactt tgccattttc
    15541 tatacctctg ttgatataat ctcccaaaaa tatataaaat tcatcttctt tgattgtttt
    15601 aatgtattct tttaaaacac tatagcaacc ttgtaaatct cctatatgat gaattttttt
    15661 gtatttgctt aaatttggca tttggtaaag acattttttc cagtctcttg agtctaaaat
    15721 tgggtatttt tttggatttt ttttgagcaa atcttgagtt ttttccaaaa gagcataagg
    15781 aatgatatat ccattttttt tagcttctaa aagatttttt tcttgacatt gttttaaaga
    15841 gctatcaaaa acaataacat atattttata gcgatattgt ttagctaagt ctttataaat
    15901 ttttaatgtt tcgttgtaag cgtttatgat gctaaactca cctttttgca tacgcatttc
    15961 tagaagtttg agtaaaattt tactcaaatc ttcatcattt ttaacattta aaattttata
    16021 ttcactgact atatttttaa cgcttcctga taaaagacgc aaagcattta aatcaagtgt
    16081 ataattttga agtttattat ttttgataaa ttcttcttgt cctgcgtaat aattccctct
    16141 taaaacaagt aagattcgca cattctttgc ctagattttc tttaaaaatt cagtttttaa
    16201 aacaataacg ccaaatttat ctactctagc ctcaatttca ccttctttag aagtgagctt
    16261 aatatttttt atagtagttc cacgttttaa agttgtactt gcacctttaa ccttaagatc
    16321 ttttattaca ctcacgctat cacctgtgtt aagttctatt ccattagtgt ctttagccat
    16381 ttttttcctt tctttgatct aaaatattta aaatttgcac cactaaagca aaagccatag
    16441 cggtataaat atatgcctta tcaatatgaa tatcaaaact ttcagcaact aaaactacgc
    16501 ctattagcac caaaaaagct aaggctaaaa ttttaatgct tggatatttt tcaacaaaat
    16561 ctgctatagg tttagaagca aaaagcatca cagctactgc gataataaca gcgataatca
    16621 tgatggttac atcttgagca attcctactg cggtaataac actatcaagc gaaaacacta
    16681 tgtcaatcac agcaatttca gctacaacta tccaaagttt attgcttgct ttaaaatgac
    16741 tttgactttc ttcttgatga gaaatttgct ctttaatttc tttaatagac tttacaatca
    16801 agaaaagccc acctagtaaa agaactagat ctcttcctga aatttcattg cccaatacac
    16861 taaacaaagg tgttacaagt ttcattaccc aaaaaagaga taaaagaagt aaaattcttg
    16921 taatcattgc aaaagctaaa cctaagatac gtcctttatc acgatgttca gggggtagtt
    16981 tgcttactaa aatagctaaa aaaatgatat tatctatccc tagtacaatt tcaagagcac
    17041 ttaaagtagc taaagtaatc caagcatcaa tactaaatat ccattcaaac ataaatttcc
    17101 ttgaaaattt taaaattttt taaagcgata ttttatagtt ttaaagcaaa tacctttaat
    17161 tctttaagaa aaaatttcaa tcacacttaa gggtaaaatt tcatgttcta gactatgaat
    17221 tttttcttca aattcttcaa aactcaaatt tcttttttca aaagcttttt gagctataat
    17281 cattccacca tcaagttctt cactgaccca atgcacactg actccagcca ctttcatatc
    17341 actttcataa ctttctttaa tcgcatgtgc tcctttaaaa aggggtaata aagaaggatg
    17401 aaggttaatt gccttaatat tttttgtaaa aacaggactt aaaattctca taaaacctgc
    17461 taatacagta agatttgctc cactttcttt gattttttgt accaaaatcg tatcaaattc
    17521 ttcacgagta ttataagcct tatgatcaac aatgacagta tcaagaccaa atttttttgc
    17581 tctttgtaca ccaaaagcat cttttttatt acaaatgcaa agtactactt cataggtatt
    17641 ttcccctatg gtttttttat gaagtttttc taaaatattt tctaaattac ttccatttcc
    17701 actaaaaagt acagctaatt ttacaagcat tttaatcctt tgataagttt taaagcgtca
    17761 aagctatttt tattaaattt atattttttt gcaacaagtc catgagctaa agtagcattt
    17821 tttgctgctt ctaaagcgct aaaaccaaaa cctaaatgtg cagcaatcat tccacttaaa
    17881 acatctccac tcccaccttt agctaaggct tgatttccta aatttacaac aaataatttt
    17941 tctttttgca caataatagg atttgctcct tttaaaacaa gaacacaatc ataattttgc
    18001 gaaaattttc tagcatagaa aaagcgattt ttttgcaatg tttctatatc taaatcctca
    18061 tcaaagcaca ttttataaag ttttataaat tcttttggat gaggggttat aacaacatct
    18121 tttctgttta aataccaaag caaagcttca cttaaaaagc agtttgcatc caagatcaaa
    18181 ggagtgtttt gcaaaatttc atcttttaga aaatccaaat tttcaagccc catacctaaa
    18241 gcaatagcac ttgcattatt ttcaattttt tcttttaaca tcaaaagagg cgagaaactt
    18301 ttttgtgcta ctaaagaaac aagacctgct ccaaaattta aggctccaag tcctgctaaa
    18361 gttccagcac ttgcattggc aactatataa atatggccaa aatttccttt attggcgttg
    18421 atttttctat ctatagtttt taaatctttt ttttcaagca aaaaagcttg agaattaggg
    18481 taaaatttct tagatctaat gcctaaattg gctattttaa tccttcctac aaattcctta
    18541 gcaaaatctt caagtaaaat ttcctttaaa gctcccatac aaagtgtaat atcagcttta
    18601 aaacaaggat aaaatcccaa atttgtaggt atatcacaag ctatttttaa agccttactt
    18661 tgattaactt tttgaataat taaacttgtt ttttcatcta aacaacgatt tgaacctgta
    18721 cctaaaatac aatcaatgat aatatgaaat tttttaaaat tgggttcttt tttacaaaat
    18781 ttaaaagcat aattttgtaa aatttgctct tgttttttaa aaagcgtatt ttctttaaag
    18841 cctattttat aagctttagc gtgttttaaa tttcttaaag ccaccaagcc atctgaagcg
    18901 ttgttacccc cgcctaataa aaaaagtatt tttacttttc taatcttgcg ttgaatgcga
    18961 atttttttag cttctttttt aattagcttg gctaaattta atcccgcatt ttccattaaa
    19021 ataagctcat ctaagccttt atttatagca ttttgttcta aaatttttat attatcaata
    19081 atagctttca taatcttttt tcaccaaaaa atatatattt ttttctcttt cttcttcaaa
    19141 ttttttcatt ttgggtaaaa atttctggat caaagcacga aaattcttaa aaccataatt
    19201 ttgcggatga aaatccgagt atttgcggtt catattagta cggatttgtg cgtattcggc
    19261 acgccctttt tcatcgataa gttgttcggt gatattgatt aaagctctta aataatcctt
    19321 acttaaaata tcttcttttt tactctcatc tttatctaaa taaaaaaatt cactaaaggc
    19381 atttacataa gattttatag acttttcaag ccccattcct ataacttgtt ttttattttc
    19441 tcttaatttt tgaatgagtg aagtataatc actatcgctt gaaacaataa caaaaatatc
    19501 tatatttttt tcataaaata tggacataat ttcagtgatt aaatacatat cgcttgagtt
    19561 tttgttggct gcaaaattaa attgttgcat agcgattaaa gaatattcag caatttgctc
    19621 tctccaacct tgtatatttt tttgagtcca atccccataa atgcgtttaa tgataacctc
    19681 tccgtaatct gaagcgatat caaaaatact tttagcgtat tttgcaggga tattttctgc
    19741 atctataaag atagctatac ttttattttc cattttaatt ccttgctcta aagcttaaag
    19801 cttctaaaat atgggttttg ctaatattaa gactttgttc taaatccgct atacttcttg
    19861 aaacttttaa aattttatta agcgatcgca aagaaagatt ataacgtgaa attgctaaat
    19921 ctagcgtatc tttggcatct ttttccaata cacaaaaacg acttaaatct tcatctttta
    19981 atttcccatt aaattctttt tgcccccgtt ttttactaaa aataaaagct tgtaaaattt
    20041 tttcactcat ttctttagaa cttatactcg ttttatcatc cttgctgatc tcatccatag
    20101 ctacataaag atcaatccta tccataatag gagctgaaat gtgatttttg tattttttaa
    20161 tctcattttc actacaaaca caagaaagat ttttggagaa taaatttcca caaggacaag
    20221 gattttgggc agctataaag ctaaattttg tttcataagt gattttagaa tttactcttg
    20281 aaatatgaat tttatgatcc tctaaaggtt ctcttaaact ctctatgatt tgcttgttaa
    20341 aatgtggaaa ttcatcaaaa aacaatactc caccatttgc aagtgcgact tctccaattc
    20401 tagcattttt tgttcctccg ccaaaaatac ttgctcttgt agaagtatga tgaggatgac
    20461 gaaaagcacg aattttagta aattcacaat cttttgaatc taaagacata taagcatttt
    20521 gcattaaaat ttcatttaaa ctttgaggag gcatgatata aacaaggcgt ttagcacaca
    20581 tacttttacc acttcctgga cttccttcaa ataagatatt atgcatacct aaagcagcta
    20641 tcatacaagc tcttttggct ttttcctgcc ctttgatgtc tttaaaatca agtttaaaat
    20701 ccatattttg taaaaaaatt tcattttcta tttgtaaagg gtttgcaaat aaaggatgat
    20761 tgtgagaaaa acgaaaattt tcataatttt tttctttaaa aaactctatt gcttcattta
    20821 aattttcaag tccataaacc tctaaatttg gtatcatgga agctttttgt gctatacttt
    20881 ttggaacaac gatcttagct tttttaattt tagcagagag aaacaaaagc aaagaaaaaa
    20941 gctcatttgt gcttttaata cttccatcaa gtcctaattc tcctactaca aaaaagtcat
    21001 ctaattcttc attttgcaaa aggattaata aagcgatagc caaatcaaaa tgcgatccct
    21061 tttttgggat gcctgaagga ctaagattga tagtgatttt tttagcagga aaagcaaaat
    21121 cacaacttaa aagtgtggct ttgatgcgtt cgacactttc cttaatcgct gtacttgcaa
    21181 gccctactat gcttaaattt ggcaaacctc ttgtaaaagt ggattctacc tctataatgt
    21241 ctaagccttc atgaaagctt atgcacttta gttttttcat ttctcttttt tatgattttt
    21301 cttctttttc ttaaattctt tatcgaattt ttgacgctta gcaaaggaaa ttttttctat
    21361 aaataaatgt ccatttaaat gatcattttc gtgttgaata gccacagcta aaaaaccttt
    21421 tgcttcaagt tctttaaatt ctccaaagcg atcttgatat ttaagcaaga tatgattata
    21481 gcgtttcact tcttcaaaaa aatctggtac actcaaacac ccttctgtac aagtgatcat
    21541 ttcttcatct aaaggaataa tttcaggatt gataatctct agcaaatctt cttttttttg
    21601 ttcatcgttt tcatcaaaaa tatttacaag taaaacacgc aaaggaatat ccacttgaat
    21661 agctgctaaa cctactccat tacttgctat catagtttca tacatatcat caagcaaggt
    21721 gtgaagttct gtatcaaatt tatttacaat ttcagagttt aaaaaaagtc taggattggg
    21781 ataggtgata atttttctaa ccattaaaaa acctttgttt taaatgatct ccaaagaaat
    21841 catttaaaac ttttttccaa aaccttatca atcagcccat attctttagc ttcttgtgct
    21901 gacatgaaaa aatctctttc tgtatctttt gctatttttg caactttttg cttagtattt
    21961 tttgccaaaa tatcattaag tatagttttg agtcttaaaa tttctttggc ttgaatttca
    22021 atatctgtgg cttgacctct agctccacct aaaggttgat gaatcataat acgtgaatta
    22081 ggcaaagcaa aacgttttcc ttctgcgcca caactaagca aaaatgctcc catagaagca
    22141 gcttgtccta tacaaatcgt acaaacatca ggtttgatat agttcatagt atcataaata
    22201 ctaaaaccac ttgtaattac accacctgga gaattgatat aaagataaat atcttttgta
    22261 ggatcttcag cttctaaaaa aagaagttgt gctacgatag aagcggcaag ttcatcatga
    22321 atttcaccac ttagcataat aattctatct tttaaaaggc gtgaataaat gtcataactt
    22381 ctttcaccac gactagattt ttcaataaca taaggaataa acattattta tcttctttct
    22441 cttttttgct cactttttcc gatttttctg tttttggtat aaaaatatca ttaaaaagtt
    22501 tttcttcaat taaagccatt ttcacagcag gcaaagctcc ttgtttttta tagttttcta
    22561 aatgctcttt tggattcata ccatagcgat atgcttcaaa ataaatcgct tgaatcaatt
    22621 cttgatcatt tacttcaatc ttacgcaatt ttgcaagttc atcaatgata aaagtaagtt
    22681 ttacactttt ttgtgcttct tctttaaaag aatcacgttt ttcttgatat ttttctttac
    22741 ttgctttaag ctcttcaatt tctttttcgc taaaagtatt aaaagccgca cgcatctgca
    22801 tatcagtttc ttgttctact atgcctttag gtaaatcaaa attatatttt tcaatcaaag
    22861 catctgcaaa tttgcctttt aattcatcat ttacaagttt gaaaagtttt tcatttttga
    22921 tttgctcttt taatttttca tctaaaactt caacactagc tttttcttct cctggtaaaa
    22981 gttttttaag catttcatca tcaagttctg gaattttaag ctcttgaatt tcatgtagtt
    23041 ttactttaaa tactgcatct ttacccgcta aatgcgctgc gccgtattct ttagggaaag
    23101 ttactttgat atctttttct tcacctattt tcattcccac cataccatct tcaaaacctg
    23161 gaataaattg cttagaacca atttctaaaa cataattttc agctttacca ccttcaaaag
    23221 ctttatcatc tacaaaacct tcaaaatcaa attttgcaaa atcaccttct tttaaagctc
    23281 tttttgtttt tatagcttca ggagtagcaa aacgctttaa aagttcatct tttttctcat
    23341 caatttcttt tttacttact tttggagttt gatattcagg gatgagtttt tcataaccct
    23401 caagtttgat ttcaggttta aaagaaagta ttaattcagc aataatttct ccatctttac
    23461 gatcaaattt ttcaaaatat ggctcaccta caagctcttt attttctttt ttaagttctt
    23521 gtaaagcgct atttacagcg gatttaaaaa gattttgttc tgcatcttga gtgagctctc
    23581 tttcatatct tttaagtacg gcacttacag gaacttttcc tagtctaaac ccatccattt
    23641 ttacactttt agaagctttt tttgctaaat tttctacttc acttttgatc attcctgaag
    23701 gaatttttac actagcagtc gcattaacag aatctagttg ctttgccttt acttccatag
    23761 ttttttcctt ataaaataaa atttgccttc aatgatagca aatttttcct tattacttgc
    23821 ataaaatttt aaagtaattt atgataaaat tgcaatatta cattattatt aaaatataaa
    23881 aaatattttt ggagaaaaat ttgcaaaaaa aatttgaaga ttgtgttaaa accatacttg
    23941 aaattatagg agaaaatcca aatcgtgaag ggcttattaa aacaccaaat cgtgttttta
    24001 aagcttatga atttcttact agtggttata cgcaaaatgt caaagacatt ttaaatgatg
    24061 ctttatttga aagctctaat aatgaaatgg ttttggtgcg tgatatagaa ttttatagtc
    24121 tttgcgaaca tcatctttta cctttttttg ggcgtgctca tgtagcctat atccctaata
    24181 aaaaagtagt aggtttaagc aaaattccac gccttgtaga agtgtttgca agaagacttc
    24241 aaattcaaga acaacttact gaacaaatcg cacaagcttt aatggaaaat gttgatgcaa
    24301 aaggtgtggg tgtagtcata gaagcaagac atatgtgtgt tgaaatgcgt ggaatacaaa
    24361 aagctaattc caccactaca acttcagctt tacgtggaat tttcttaaaa aatgaaaaaa
    24421 ccagagagga atttttttct ctcataaact ctgctaaaca ggtaagattt taatgaatct
    24481 tgaaaaacta cgctccaaac ttggtaaaga aaatttaagt gctatctttg gagagattac
    24541 aaaaatttct gctacgagta tagaaattcg tgggcttaaa acaggggttg gagatatagt
    24601 gaagctagtt tccaatgaaa atgaaaattt aaacactcta gctatggtcg tagaaatcaa
    24661 ggaacaattt agctatttaa gccctttttc ttttatagaa ggtttcaaaa taggcgatcg
    24721 tgctttcata agtgatgcag gtatgcaaat aggcgttagc gatgaacttt taggcagagt
    24781 agtagatcct tttatgcgcc caaaagatgg taaaggagct atagaagtaa ccaaatatat
    24841 gcctataatg cgtgcaccta ttgatgccat gaaaagaggg cttatagaag aagtttttcc
    24901 cgtgggtgtt aaaaccatag acgcgctttt aacttgtggt gtaggacaaa aacttggtat
    24961 ttttgcagga agtggggtag gaaaatccac tcttatggga atgatagtta aaaattccaa
    25021 agctcctata aaagtagtgg cactcatagg agaaaggggg cgtgaaattc ctgaatttat
    25081 acaaaaaaat ttaggcggaa agctcgatga tacagtgatt attgttgcta caagtgatga
    25141 tagtgctttg atgcgtaaat acggtgcttt ttgcgcaatg agtgtggcag aatactttaa
    25201 agaacagggc aaagatgtac tttttatcat ggatagtgta acgcgttttg ctatggcaca
    25261 aagagaaatt ggactagctc ttggagagcc tcctacaacc aaaggttatc cgccaagtgt
    25321 tttaagtctt ttgcctcaac tcatggaaag aaccggtaaa gaagaaggta aaggcactat
    25381 aacagccttt tttaccgttt tagtggatgg tgatgatatg agcgatccaa tcgccgatca
    25441 aagtcgttct atcttagatg gacacattgt tttaagtcgt gaattaacag actttggaat
    25501 ttatcctcct gttaatatac aaaactctgc ttcaagggtg atgagtgaca ttataagtcc
    25561 tgaacataaa ctttgggcaa gaaaatttaa gcgtttaaac tcgcttttaa aagaaaatga
    25621 agtattgctt cgcatcggtg cttatcagaa aggaagtgat aaagaacttg atgaagctat
    25681 ttctaaaaaa gaatttatgc aaaaattctt aggacaaaat cctgaagaaa gcttcgaatt
    25741 taatcaaact ttagagcttt taagtcaaat tgatgcacca aatactcctt tgctaccaac
    25801 tcaaaatata aatgtaggaa gtgcaagtgc aaccttgcct aatcctaatt taaaataaaa
    25861 ttatttaata aaataatctc catcaaaact gattaaagaa tattttcttt catcgcctat
    25921 gctttgagtt agctcttcta tgcttaaaaa acttagcgta tcagcttcta catattcacg
    25981 cacttcttca gcatttttat ttgcgctgat aagttcttca aaagttggag tatctatacc
    26041 ataagtatca ggaaatttga tctcaggaca agctatggca agatggattt tactcgctcc
    26101 tgcagcacga agtaaggaaa ttattttttt agaagtagtg ccacgcacca agctatcatc
    26161 aatgactacg atttctttgc cttctaaaac tttacgcata ggattaagct ttaattttac
    26221 ttttaaattt ctaagctctt gagttggctc tataaaagtt cttcctacat aatgatttct
    26281 tactattgcc atttcaagag ggatttgtaa atattgagca aaacctatag ctgcacttac
    26341 tccactatct ggcacaggca cgacaaagtc tgctttataa gcaaattttt tagctaaagc
    26401 ttcgcccatt tttttacgca cttcatacac gcttttacct tctactatgc tatcaggtct
    26461 agcaaaataa atgtattcaa aagcgcaaat tctaggagtt tgagaaaaaa gttctatgct
    26521 ttcaaattta tcatttccct gagtaaaaat aagcatttcc cctggtttaa catcacgaat
    26581 aaattcagcc tctataagat caaaagcaca agtttcacta gcaactatat agcctccatc
    26641 ttttaaacgc cctaaagaca aaggacgcac cccatgagga tctcttacaa tataaagttt
    26701 atctttgctt gctaaaacaa aacaataagc tcctatacat tcttttaaac tctcaataaa
    26761 tctatctttt agactttctt gcttacttct tgcgataaga tgaacaacat tttctgtgtc
    26821 catattggtt tgaaaaatag ccccatcttg aataagtctt gatcttactt cttctttatt
    26881 gactaaattt ccattatgcg ctaaagcaat atcacctaaa accgaagtgg ctgctatggg
    26941 ttgggcatcg tttaaacttg aatttcctgc tgtagaatag cgattatgcc ctatagcgat
    27001 ttcaccttct aaagttttta aattatcggg attaaaaatt tgactcactt cacctttagc
    27061 tttaatagtc ttaatatttt taccattact cacactaata ccacttgcct cttgcccacg
    27121 gtgttgcata gcaaaaagcg cataatacgc ataagtacta gcattttttg aattaataac
    27181 tcctacaact gcacacattt taaattccta aaaaatcatt aattgaatac atttttgctt
    27241 cttgcttact aagccaaata gcgattttaa tcgcaccttt agcaaaagtc gcccttgaag
    27301 tagcggtatg attaagttct aaaaattctc catcttcata aaaacctact gtatgacgtc
    27361 ctactatatc gccacccctt aaactcatca cggcaatctc atctttgctt ctttcaccta
    27421 taatgccatc tcttccactt actcttactt tttcaagttc taaatttcta gcttttgcta
    27481 cactttgagc taaagtcata gctgtaccac ttggtgcatc ttttttatgg cgatgatgca
    27541 tttctaaaat ttctatatca aaatttctta gcatttgact ggctttacta gcaagatagt
    27601 ttaaaaccgc aacacctaaa gacatattgg tcgcataaaa aatcggcatc acttcactag
    27661 cactttgcat caaatgtaaa attttctcat caagccctgt tgtacctatt accaaaggtt
    27721 taggtatagt tcttgcataa tttaaaagct catgagttcc acttggggaa gaaaaatcaa
    27781 taatcacatc gcttttttca aaaagctctc ctaaatttcc acccttatca taaagtatcg
    27841 aaatttgtgc ttgtgtttcg ctttttaaac attcttcaat ctgttttccc attcgtcctt
    27901 tagcgccata aattcctatt ttaatcatct ttttccttga aaataaaata ttgattttag
    27961 catttatttt gtaaatttta aataataaaa ttaagcttta tggtttttta atttatataa
    28021 attatctaac aattttgctt cttctcctaa gcccttgcta tgataaaatt ttaaattttt
    28081 actaagatat ttttgctcta cccagccacc aaaatcatgt ggataaagat agttttgttt
    28141 ttcttgatga ttgttgttaa gataattagg tatttctaaa gcttcattat tttttacata
    28201 gtttaaagct tcattgatag ctttgtagct tgcattagat ttgattgtgc ttgctaaata
    28261 aactacgcat tgggctagga taattcttgc ttcaggataa cctatatttt taacagcctc
    28321 tagagtcgaa accgctaaat ttaaagcatt tggatcggca tttccgatat cttcacttga
    28381 aaaaatcacc aaacgcctag cgataaaatc cgcactttct cctgcatcaa taagtcttgc
    28441 aagataataa atagctgcat caacgtcact tccgcgtaaa ctttttatca ttgcacttgc
    28501 taaaatataa tgtgtatctt ttgagctaac accttcacta tttatggtgt tgcgaagttt
    28561 tttaagattt tcaagactga tatgtttttc atttaaaacc aagacaaatt caagcaaatt
    28621 tagcatagct cttgcatcag cacttttcag tagaaaatct ttagcttctt tatcaatact
    28681 aaatttcatt ttttcttgta cacgcaagag taaagtttca agttccttta cccctaaaga
    28741 tttaaattca aaaagcatgg aacgacttct tataccagaa cttagaacaa aatagggatt
    28801 ttcagtgctt gcgccgatta aaattaaacg gtaattttcc ataggaatta aaagcatttc
    28861 ttgttgggtt ttgctaaggc ggtgaatttc atcaataaaa attaaaggct tataaagact
    28921 atttttataa ttatctaaaa tttttcttag ttcttcgagt ttaaaatttc ctccatcaaa
    28981 ttcataaaaa tctaagccaa attctttggc tacaactcta gcaaaagttg tttttccaga
    29041 acctgccgtt ccaaaaaaaa tactatgagg aagtttttgt aaagcagtaa attttttgaa
    29101 aatttctata agctcatatt gtcctaaaat atcatcaaaa ttttcagggc gaaaggtcaa
    29161 agctaggctc attaatttaa atccatattt gaaaattcac taccattaat ttttagttga
    29221 ggattggcta agctatcata agataaattt agaaaaaagt tattattttc ttttaaaaaa
    29281 tattgattta aacctccata atcttttgtc caaggaaaaa tttcatcagg ctcatctgaa
    29341 ctgataactt gtaattttgc ttgataagag ttgttaatat ttaaattgcc ttgtagactg
    29401 atattttgtt tatttttttc aagaattaaa ttttgtattt ctagatcaag atttttttga
    29461 ataaaatgag agatattgaa atttgagtta agaaatttat ttatggttat attaaatttt
    29521 gttttgtcaa aatttaaatt ctgacccaat aaagatttaa gatcaatatc aatttcattg
    29581 gattttcctt gtatgtttaa gtttattgtt gaattttctt cattaaaatt tactagattt
    29641 ttgctataaa aagaattgat tttattgtta tctaacacaa gataatcaaa gttgatttgt
    29701 tgttggcttt tgctaaataa atttaattca taaaattgta caggattgtt aaaaaattgt
    29761 tcgtaattta aattttgcaa cacaaattta gtataaaatt gagaaaaatt aatcatatca
    29821 aaatgtattt taatgttttt aatttctaaa tttttattca ttaaagcttc aatatatccg
    29881 ccgtttatga tggtatctcc accttcattg cttaaattta tatctttaat atttagaaat
    29941 attttagagt tgttatcgtg taatttgaga gtaaaagttc ctaatttatt gttttttaac
    30001 actttatcta aaaaatcaaa aggatttgta aaatttcctt ttataatttt atttaacaaa
    30061 aaataattat taaatttaag gtcgattttg gttgaaagct gtgtatgaga gtgatttaaa
    30121 gtaaaacttc ccttagaagt taaaaaacct tttttgaagt aaatatctgt aattgtataa
    30181 tcaggattgc tgtttttaat aaatttatta aataaaagtt cgttagtgta tcctatataa
    30241 aatatatgaa taataaaacc taatataaaa caaaaaacaa taaaaatcca ttttttcatt
    30301 atttgcctta gatgaaaata taagtgttat tttataaatt gcttgttaaa aaagagttta
    30361 aatttttatt taagagtaat gaagtagttt gccgaagaat gatttttata aatcccttgt
    30421 taagggattt atattaataa gcttttttat aacattgaat ttcaattttt ctagctactg
    30481 gaatagcctg agtatttggt gtagcaggta ttccataaga aattttactt tctaaaaaat
    30541 ttccaacctg taaatcttta aaagttccat ctttatctgt tccaaaaata ccacaatcat
    30601 ccatttctat ttcggtattt ggtagaactt ttatagccat ttgtccgcca taaatagagt
    30661 caataagcaa ggttttattg ttatcataaa tttgcgcaat agtaccttca agttttagac
    30721 tatctgcaaa aagcattgag ctagctaaaa gtgctgatgt gaataaaata ctttttttca
    30781 taattatttc tccttaatgt aaagtgatga cattataaaa tttttaagtg aagtgaatgt
    30841 gaaattaaaa atttttgact ttcataaaat taatacgctt taattatttt caaaaaaagc
    30901 ttgtggaaaa agatataaac cttcattaaa aggagctttg attagagtat attgaagatg
    30961 aaatggggta atggagttaa tagattgttc taaaaaaagt agtgcagtaa aaagcatctt
    31021 tatctgtact tatgataaat tttctgccta aatgttccaa agctttagca actatttttt
    31081 gtttggtttt ttcatcaaat tttaatcttt taatagcaat tttatgactc agttttaaaa
    31141 aatcatccat agagcttaag ataacttggt ctttagcatt tttgtcatca tctgttgtag
    31201 catgtatgag tatagttgga gaagttttaa ctaccatagc gatatgagaa taagggcttt
    31261 gacttaaatt ttctattaaa aaactttcac ttcctattcc tgcacgaaag acaagatcac
    31321 ctatttcaag aaaaggtaga tagggttttt tgatgatttg atttgaagga ttggaattta
    31381 taaagaaacc caaaattcca atcaataaaa ataaaattaa ga
//
LOCUS       DARGBD010000009        30458 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.009, whole genome shotgun sequence.
ACCESSION   DARGBD010000009 DARGBD010000000
VERSION     DARGBD010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30458
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.009"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            19..690
                     /locus_tag="SFZ04_000332"
     CDS             19..690
                     /locus_tag="SFZ04_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8064640.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            687..1922
                     /locus_tag="SFZ04_000333"
     CDS             687..1922
                     /locus_tag="SFZ04_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8064641.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAVLEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            1922..2494
                     /gene="recR"
                     /locus_tag="SFZ04_000334"
     CDS             1922..2494
                     /gene="recR"
                     /locus_tag="SFZ04_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEG8064642.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDAIIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2491..3027)
                     /locus_tag="SFZ04_000335"
     CDS             complement(2491..3027)
                     /locus_tag="SFZ04_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HEG8064643.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFTYE
                     KIADFSLQELADISYKNY"
     gene            complement(3024..3716)
                     /gene="cybH"
                     /locus_tag="SFZ04_000336"
     CDS             complement(3024..3716)
                     /gene="cybH"
                     /locus_tag="SFZ04_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HEG8064644.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEKH"
     gene            complement(3727..5442)
                     /locus_tag="SFZ04_000337"
     CDS             complement(3727..5442)
                     /locus_tag="SFZ04_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEG8064645.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALNADVKKASDEAFKYTPNPYATGSDKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(5445..6584)
                     /locus_tag="SFZ04_000338"
     CDS             complement(5445..6584)
                     /locus_tag="SFZ04_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG8064646.1"
                     /translation="MIDYHQIESRLSTLEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLENAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6704..8545)
                     /gene="mnmC"
                     /locus_tag="SFZ04_000339"
     CDS             complement(6704..8545)
                     /gene="mnmC"
                     /locus_tag="SFZ04_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEG8064647.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRLLETTPSKRPKKLFYISVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADVWYLDG
                     FSPNKNLQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDVFE
                     KYLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKNLVKNLFEKSKACIYFNHEFQA
                     YKFENECFTLKFKNDIVKSDYAVLIYAMGADTKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEEYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(8542..10521)
                     /locus_tag="SFZ04_000340"
     CDS             complement(8542..10521)
                     /locus_tag="SFZ04_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEG8064648.1"
                     /translation="MAKIFVFLVFAFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVIHEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKTTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQKPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(10521..11612)
                     /locus_tag="SFZ04_000341"
     CDS             complement(10521..11612)
                     /locus_tag="SFZ04_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEG8064649.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(11609..12814)
                     /locus_tag="SFZ04_000342"
     CDS             complement(11609..12814)
                     /locus_tag="SFZ04_000342"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEG8064650.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIEKLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQSNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(12826..15021)
                     /locus_tag="SFZ04_000343"
     CDS             complement(12826..15021)
                     /locus_tag="SFZ04_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEG8064651.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKVLLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPLLVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQAATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(15005..15229)
                     /locus_tag="SFZ04_000344"
     CDS             complement(15005..15229)
                     /locus_tag="SFZ04_000344"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEG8064652.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(15240..15959)
                     /locus_tag="SFZ04_000345"
     CDS             complement(15240..15959)
                     /locus_tag="SFZ04_000345"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEG8064653.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSTVKNN"
     gene            complement(16011..17204)
                     /locus_tag="SFZ04_000346"
     CDS             complement(16011..17204)
                     /locus_tag="SFZ04_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8064654.1"
                     /translation="MRKNILIFFCFFLFVDISLANTINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLASQNEDLLKSKSN
                     MESKLISLMAKDFAYDLPIPQGYIESEESFVAFEILESLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINDSLKDYNAQLVKLQSLKQKQISEINKQKTDRTIYAKKLDDLQAQ
                     QEELRKTLNQLKIINNKEGANLNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(17201..18007)
                     /locus_tag="SFZ04_000347"
     CDS             complement(17201..18007)
                     /locus_tag="SFZ04_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG8064655.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILVTNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKGLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(17994..18659)
                     /locus_tag="SFZ04_000348"
     CDS             complement(17994..18659)
                     /locus_tag="SFZ04_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8064656.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQAAKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(18729..19907)
                     /gene="trmB"
                     /locus_tag="SFZ04_000349"
     CDS             complement(18729..19907)
                     /gene="trmB"
                     /locus_tag="SFZ04_000349"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEG8064657.1"
                     /translation="MPNFKSKKIKEINLPCSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSKLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLVQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVKFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(19907..21142)
                     /locus_tag="SFZ04_000350"
     CDS             complement(19907..21142)
                     /locus_tag="SFZ04_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEG8064658.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     GSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDLAGLRSEPSNKVKAAQ"
     gene            complement(21087..22055)
                     /locus_tag="SFZ04_000351"
     CDS             complement(21087..22055)
                     /locus_tag="SFZ04_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8064659.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIVSIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGSILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            22133..23233
                     /locus_tag="SFZ04_000352"
     CDS             22133..23233
                     /locus_tag="SFZ04_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEG8064660.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            23287..23363
                     /locus_tag="SFZ04_000353"
     tRNA            23287..23363
                     /locus_tag="SFZ04_000353"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23321..23323,aa:Ile,seq:cat)
     gene            complement(23471..23546)
                     /locus_tag="SFZ04_000354"
     tRNA            complement(23471..23546)
                     /locus_tag="SFZ04_000354"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23511..23513),aa:Phe,seq:gaa)
     gene            23686..25029
                     /locus_tag="SFZ04_000355"
     CDS             23686..25029
                     /locus_tag="SFZ04_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEG8064661.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFTLEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGNLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            25040..25690
                     /locus_tag="SFZ04_000356"
     CDS             25040..25690
                     /locus_tag="SFZ04_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEG8064662.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(25687..26358)
                     /locus_tag="SFZ04_000357"
     CDS             complement(25687..26358)
                     /locus_tag="SFZ04_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HEG8064663.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQKYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(26364..26990)
                     /gene="upp"
                     /locus_tag="SFZ04_000358"
     CDS             complement(26364..26990)
                     /gene="upp"
                     /locus_tag="SFZ04_000358"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEG8064664.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEV
                     SKDFSLKEIEISTPIQKTIVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(26987..28222)
                     /locus_tag="SFZ04_000359"
     CDS             complement(26987..28222)
                     /locus_tag="SFZ04_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG8064665.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSIEEIVNFCKSLAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFNEKAYFESLK"
     gene            complement(28224..29615)
                     /locus_tag="SFZ04_000360"
     CDS             complement(28224..29615)
                     /locus_tag="SFZ04_000360"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG8064666.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            29680..>30458
                     /gene="salC"
                     /locus_tag="SFZ04_000361"
     CDS             29680..>30458
                     /gene="salC"
                     /locus_tag="SFZ04_000361"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HEG8064667.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFD"
BASE COUNT        10044 a         5525 c         3986 g        10903 t
ORIGIN      
        1 atttacaagg acactagaat gattaatgtg ttgatgatag aagatgatcc tgactttgca
       61 caattattat ctgaatattt agcgcaattt aatattaaaa tcacaaattt tgaaaatcct
      121 aaaagtgctt taaatgtggg tattcaaggc tatgattgtc tgattttaga tttaacttta
      181 cctggaattg atggtcttga agtttgtaga gaaatccgac aaaaaagcaa tattcctatt
      241 atcatctcat cggctagagg tgacttaagc gataaagttg tggggcttca aatcggtgct
      301 gatgattatc taccaaagcc ttacgatcca aaagaaatgt atgcaaggat tatgagtctt
      361 attcgtcgca caaaaagagt tgaacacact aataatgaaa atattaactc tgctttcaaa
      421 attgatgaaa gaagacatga gatcacctat gaagataagg ttttaacact tactcctgct
      481 gaatttgaaa ttttagaata ccttatccaa caacacggat atagtgtttc aagagaacag
      541 cttgtaagtc gctgtaaaaa tctaaaagat aaagattcta aaagccttga tgttatcatc
      601 ggtcgcttaa gggtaaaaat aggagatagt tcaaaatctc caaaacatat tttttctgtt
      661 agaggtatag gatataaact gataggatga caaaaaatta ttctattcat accaaactga
      721 ttattttatt tgttgttact tttttcttgg tttgtgtgct ttttatcgtt cttttaaaaa
      781 tagaagggaa tacctataat gaagaagaaa gtttaaaaca agaaaatctt ataaaaaatt
      841 tactcatctc ctatgaaaac acttcaggtg ttgaaatagg agcttatctt ggaaacagcg
      901 gttttaacgc tatacaaaat cccaatcttg taaaagctat aagaaataat ggacaatcac
      961 tttttaaagc aggcggagag ctttgtactc tttcttcttt aaaatatcat agcaatcttt
     1021 attttgatgt tcaatgtaaa gattttgatg gcttgtatga agaaaatact agtgataggg
     1081 tttataatct tttattgata ggatttttct ctttttcttt gttggttgtt tttatgtatt
     1141 tttctgtatt aaaatcctta gaacctttaa aaaaattaag aagacaagtt gccgaagttg
     1201 caaatgggga acaacctgat tttctagact atcaagaaga tgaagtaggc aagatcgcct
     1261 ttgaatttca aaaagctttc aagaaaaacc aagaattaat ccaatcaaga caacttttcc
     1321 taagaacaat catgcatgag ttaaaaaccc ctataggaaa agggagaatc atttctgaaa
     1381 tgatcaaaga agacagacaa aaagaaagac ttatcgctat atttttacgc atggattctt
     1441 tgatcaatga atttgccaaa atcgaaaatt tattttcaaa aaactacaac ttacacttta
     1501 aacctagtcg ttttagcgct gtacttgaag aagctaaaga acaccttatg atagatgatt
     1561 ttaataaagt tgtaaaagtc gatataagat atgacgcttt aatcaatgtt gatatggaaa
     1621 ttttctctgt aattttaaaa aatcttatcg ataatgcctt aaaatactca aacaatggca
     1681 cttgtgagct tttttgttgt aaagaatgtt ttaccattaa aaatccaggc aaacctttag
     1741 cagagcctat agagcattat cttgaagctt ttacaagaga aaaacacaat caagtcaaag
     1801 gtatgggact aggactttat atagtttcag aggtatgcaa actgcataat tttgatttga
     1861 tttattttta tgatgatgga aaacattgct ttaaaatttt ctttggagat aaagaaaaat
     1921 aatggtaaaa ggcctagaaa aattcaatga acttgttgaa agttttgcaa atttacctac
     1981 cataggaaaa aaaaccgcca taaggcttgc ttatcacctt tgcataaata atcaaatcga
     2041 tggtatgaaa ctcgcacaca atatagaaaa tgctatccgc tttataaaac cttgtgagca
     2101 atgtggtgcc ttaagcgaaa atgagctttg cgaaatttgt agcgatgaag aaagaaataa
     2161 aaacatttta tgtatagttg aaagcccaaa agatatacta acactcgaag agagtcaaag
     2221 ttacaatggg ctatattttg ttttagatga gttaaatgaa gaaaaactcg aaaaactaaa
     2281 gcaaatcata cttaagctaa atatctctga gctcattttt gcattgacac atagcattaa
     2341 ttctgatgca atcatctttt ttatagagga taaatttaaa ggcttaaacc taacttttag
     2401 taaaatcgct caaggaattc caagtggtgt aaatttagaa aatgtggatt taatctcttt
     2461 aaataaagct atgaatttta gaacaaaaat ttagtaattt ttataagaaa tatcggctaa
     2521 ttcttgcaaa gaaaaatccg caatcttttc ataagtaaaa ccttccttgc ttaaaaagtc
     2581 aagtaaagtt ttttccatga ttttagctcc ttgtataagc tcatctgaga gcttaaaact
     2641 catcgcttca atacgctttg gcacacaagc taagatatgt gttttaggca aatctcctgc
     2701 aagttccatg tattgtaagg tttgaagcat ttctatttca tgggcacttc cactccagct
     2761 aattttatta ggcatagcat cataaggaaa gaaaaataca tctcctatac tcgcaccttg
     2821 cgcttctata cagtctaaaa cgataagtct atcgtatcga gcgatgatat agctaagctg
     2881 caaagccaaa gttccaccat caacaaaatc taaagtaaat tcagaatgag tgaatttgta
     2941 gtttttttca agttgtttgc aaagatgaac gcctaagcct tcatccgcaa acatgatatt
     3001 acctattcca aggactaaga atttcaatgc ttttcttctt ttacaaattt atatccgcta
     3061 ataatagcat ccatagcacc atctttacct tttactgcgt taaaaatcgc catgtaaata
     3121 tgtactggca caaaaatcat aattacccac atcaaaattc tatgataagt tcttacatcg
     3181 gccaaaccgc ccattgcagc ttcaagcggt cttaaaatat gatataaaag cccacctaag
     3241 ccctcatggt aagtatgagt ataaagaata agccctgtaa gaatgatacc taatatcaca
     3301 agataaaaga aaaaataagt tacaaattgc aaaggattat aaaccccttt taaatgcgga
     3361 tgttttccta agaaaatgta aaattttact tgttctatcc ataatttgat attaaaaata
     3421 tcccatacac ttctgcgttc ttttgcgctt accttatcgc agaaaaacaa atatacttta
     3481 aaaataatac aagcgattaa aacaaaaccc accgcttgat gtactaagcg gtattttgct
     3541 tgcataaaat ttacgggctc accgttacta atagggcttt ggaacacata ggaaagataa
     3601 taccctgtgc caataagaat cactatagca atagctctta cccagtgcgt taaacgcaaa
     3661 cctatgctaa attcatattc agcttttctt tgcaattttt cttctttgtt ttgcatgaaa
     3721 gcctccttat aaattgacat tcactttata ttcacttaga ttattgccct tagtatccat
     3781 tacatgcacc gcacaagcaa tacaaggatc ataagagtga atttttctaa tgatttcaag
     3841 tggttgtttt acatcagcga ttttaagtcc tatcaaacat tgctcataac ttccacctac
     3901 gccatttgcg tcttttggac ttgcattcca agtagaaggc accacagctt gccaattttc
     3961 aataacacca tttttaattc tacaccaatg gcttaatgtt ccgcgtggca catgccccat
     4021 atagcgtcct ttgtattctt tagaattatc gatcacataa ggagcacaag tactctggtc
     4081 tacttttaaa ttttcaacta aattattaaa cgcttttaaa gcattatttg caacgatttt
     4141 tgcttcaata caacgagcag ctgttcttcc aagtgtgcta aatacagcat ttaaaggaag
     4201 tcctgtttct tttaagaact catctaccac aggaacaaca ttttgattac ctttagcata
     4261 atttacaacg atatttgcta aaggtcctac ttgcatagga tttccttcat agcgtggagc
     4321 tttaatccag ctatatttac ccttagtatc aaacacttta gaatggacat tatttccatg
     4381 atgatctacg ctttctccat ctacaagtcc tgtataattt ggatttgttt tgccatcata
     4441 aggatgtaaa ggttcattgt ctgcatacca agaatgagtt gcctcttcag taatcttatc
     4501 ttcttctact tcataaacct tgcttaaatc tccatttttg ataataccac tttcaaaaag
     4561 ccattcatct cttccgattt ggaattcttt aaaggtataa agattattta cccctatatc
     4621 atttaaaaca cttgcttcat gtgcataagc ttttcctgcc atcacaagat caggataata
     4681 cgcacgatta acaaagtctt gcacttcttg gaatttaacc atatattcac ccattcttgc
     4741 aggatcgagt aaatccataa cgcaagttac accaccaacg gttaagcttt gtggatgtgg
     4801 atttttagct ccaaaaatcg ccatacattg agcaatgatt ctttgaattc ttaaacattc
     4861 tagatagtga gaaagaacga ttaaattttg ctcaggactt aaacgataag ttggatgacc
     4921 atagtacgca ttagcaaaag gtcctaaatt tcctttatct acaaaagttt taagtctttg
     4981 ttgcacttca agaagtttat ccgaacctgt tgcataagga tttggagtgt atttaaaagc
     5041 ttcatcgctt gcttttttaa catcagcatt taaagcactt accacatcag cccaatcaag
     5101 cccatgaagt tgataaaaat gcacaatatg atcgtgtaaa aataaagccg cattcattaa
     5161 agttcttgtt aaaagcgcat ttaaaggcgg agtaataccc aaagcatttt caacagcaac
     5221 tatacctgct ttataatgtg aaaaagtaca aactccgcaa attctttgcg tcataaaacc
     5281 cgcatctctt ggatcacgcc cttttactat ggtttcaata ccacgccaca aagtagagcc
     5341 cgcataagct tcttttacca cattgttatc atcaacaaca acttcaactc ttaaatgccc
     5401 ttcaattctt gtaataggat ctacgattat tttttgactc atttttattc cttatctttt
     5461 tgcatggaag atataactgc gtgtgctgct atagcaacgc ctgtgagtgt aagcacacct
     5521 ataccgattt tatctgaaac actatccgca cccaaaccaa aaacagtatc aaatttacga
     5581 ctagccatag gctcttcaaa aggtcccata gtatcccaaa aattaggctc agaacaacct
     5641 atacaaccat gccctgcttg aataggccaa gaagtgtgct ggttaaatct ctctcttgag
     5701 cagttattaa aagtataagg tcctttacaa cctactttat aaagacaaaa accttgtttt
     5761 gctccttcat ctccaaaagc atgtacaaat tcacccgcat caaaatgtcc gcgtctttca
     5821 caaagatcat gaattcttaa accataagcc cattttggtc tattatacac atcaagtgct
     5881 ggtaactcac caaataataa ataatgaagt acattaccca ctatattttt ttcacttgga
     5941 ggacagcctg gaacattgat cacagtttta cttgttactt tgcttaaagg ctgcgcgttg
     6001 ctaggatttg gtcttgcggc ttgaattcct ccaaagctag aacaggttcc tatagcaaaa
     6061 atcgccaaag cattttcact tgccattttt gaaagctcat agcctgtttt tccatgtgca
     6121 cctatggtta aaaaatgctc cgtatcaccc atagggatac caccttcaac cattaaaatg
     6181 tatttatttt tatgcttttg aatggcattt tctaaatttt cttcagcttg ccaacctgct
     6241 gcagccatca ctgtttcgtg atattctaaa gaaatataat caaaaatcaa actatcaatc
     6301 gttggagtat cacttcttaa caaactctca ctacagcctg tacactcagc catatgaagc
     6361 cacacaacag gaagcctatc agcaagctca gcagcttttg ccaccatagg agtaaaactc
     6421 gctggcaaag ccaaaaatgc cgtcatagca cctgcccatt tcataaaatc ccttctagaa
     6481 aaacctgact tttctaatgc ttttgtaata ctatcattgt ctttcaaaga aggaagcttt
     6541 tcaagagtcg ataaacgcga ctctatttga tgataatcaa tcattatatt tcctttgtaa
     6601 catgaaattt attctctata ataataaaat aaaggaagtt aaaataaagt taaaaactta
     6661 ctatcataag caaatattag catcactctt aattaaagct taatcataag ccttttttaa
     6721 gtttgcgaat caaaaatctt gcaggatgaa tagcgtggat gtattttttt tctaaacaca
     6781 agggttcatt atttatcaat gcacacaaat accttgccgc taaaacactt gtactaaaac
     6841 cccttgaccc atgagcaaaa ttaaaataca aattacaaga cattttagct ggtttttgct
     6901 ccttattttt tgtccataat aaagctttat attcttcttt ataaaacgct tcatcataag
     6961 catttccaac tatcataaag cgatcactcg aataagatct aaaacctact ttagaaccta
     7021 tgatttctaa ttttgtattt ttatccataa aatcggctat attttctata ttttgtttat
     7081 catcttcttc ttttgattct aaacttgcat taagcctatc ataacttgca ccaattactt
     7141 gcaaatcatc ttttacaggg caaatataag ccttagaaga taaaggaaat ggggtatcta
     7201 aaaaaggttt tagatgtgta acttgacctc ttactttgct taatttcatc tcatcataaa
     7261 aaacaaaatc ttttgtatct gcacccatag cataaatcaa aaccgcataa tcacttttaa
     7321 caatatcatt tttaaatttt aaagtaaaac actcattttc aaatttataa gcttgaaatt
     7381 catgattaaa atatatacaa gctttacttt tttcaaaaag atttttaacc aaattttttg
     7441 gaaaaatcac tccaccctct tctaaaaaag cttgattttt tgaaatttta aacaaaacat
     7501 tttctctttg tgtgtcaaat ctttcttgca tcaaatcatt atgtgcaaac tccaccacac
     7561 ccttaaattc taaatctaaa atttgtctat aaaaacggct tgcttctata aaagaaagct
     7621 ctgaaaactc ccctaaattt accttaggtt ttaagattaa agagcttaaa attccacttt
     7681 catttccact tgcacccttg cctaattcta aatatttttc aaaaacatct atctcaaaac
     7741 cccttaaact aagttcataa gctaaaacag cgcttgatat acccgcacca ataatagcta
     7801 cttttttatt ttttaaagat gaaaatgttc ttgaaaaata cgcttctttg tctttaaact
     7861 caagctcatt ttccaaataa gctttaatca tttctctttt tctaaaacct ttggtttttt
     7921 ctactctaaa accatatttt tttaaatttt tttgcaaaaa acttgccgaa gaaaaggtgc
     7981 aaatttgtgt atttttttta gaaagtcttg ccacttcaaa gattaaattt tcatcaaaca
     8041 tttgcaagtt tttatttgga gaaaatccat ctaaatacca aacatcagct ttaaaatcca
     8101 attcttttaa aacagctata tcttcaaaaa caagatctaa aaaacaatct tcaaaataaa
     8161 aacgataaat tccttcttta gccttaggat aaaattttaa aaattgttct aaaagctctt
     8221 taaactcttc ataaaattct agtttttgat aaatttctct taattgttct ttttcgatat
     8281 aaaaagcttc tacgctaata taaaaaagtt ttttaggacg cttagaaggg gtagtttcta
     8341 aaaggcgttt caaagtaaga aaaaaattta aacctatacc aaaaccactc tctgcgataa
     8401 taaaattttc ttgatttttc cattcaaaag aatgagtgta aacaaatttg ctttcattta
     8461 agccatcttt ggaattaaaa taaaaatcat caaaatccaa agaaaaagga gtattatcct
     8521 taaaaattag cttagctttt ttcatcggtt gttataaaaa taactctcaa ctccatcggc
     8581 aataccctta accaataaat cttgaaaagc tttattggcg attcttttgc cttcatttgg
     8641 atgtgtaata tagccaattt caatcaaaat tgcaggcatt tgtgcaccta ctaaaaccca
     8701 aaaaggtgct tctcttacac cgccatctac aattttatac tttttgcgtg tttgagtgag
     8761 tatatttttt tgtacatcaa tggctagttt atttgaagca acgatttttt cacgatttaa
     8821 gaaatttaaa atactttgtt ttgagaaata attaatctct tcaaaatccc cttgattttc
     8881 tttttctgct gcctttttac ttctttcact tcttgcagga cttaaaaaga aagtttccac
     8941 gccttcgcta cttttggctt ttgtggcatt tggtgctgcg ttagcatgta tagaaataaa
     9001 caaatccgct cttttatcat tggcatattt ggttctatca cgaagattga taaatttatc
     9061 cgaacttcta gtataaagca ctttataacc gcgtttttta agttcatttc caagttttaa
     9121 agccgtactt aaaactatat ctttttcttt taaacttcct tttttatcac ttaaagcacc
     9181 gctatctttt ccaccatgcc ccgcatcgat aaccacaagc tttcctgatt tgtaatttgt
     9241 atttaaagtt ttactagaac tttgagttgc ttttttgttt gcattttgat ttgtagtttg
     9301 tatataaaaa cctaaagtga gattattatt atccaactcc tttaaaagtt taaattcttt
     9361 aggagcactc aaaaccacac gaacggtttt tggattgtat tgagtaactg taatcacatt
     9421 ttgtccaaaa gtaaagcttt ttctattacc ttctaacaca cccttaaaac ttacaacata
     9481 tcggaatttt tgatctttgg tatcaaatac tgctatttct ttttcatcca aatcatcgct
     9541 taaatttaac accacagcat tagaaatttt atccacatct aaaacatata aaggtttttg
     9601 attttctttt tcattattgg tttttttatc ttgttttttt gtttctaaaa ctttggtttt
     9661 aatttctgtt ttttgatctt gctttttctc tgaaatttta ctaacttgct cagtcttttt
     9721 ttgactagta gtttcttttg aaaaaattat tttttcttct ttaaaagata tatcaatagg
     9781 aattttttct ttagcataaa ccactatgcg tatggttttg ggattaaact gtgaaatcac
     9841 taaacgatag tcatcaaatt taaactcttt tttaccccct tctaaaaccc catcaaaatc
     9901 actaataaaa cgatagtttc ctttttcgtc taaagcaaaa ctttttaatt gatccttatc
     9961 caaatctgca tttagttcaa actctacacc ttggtttgtt ttacttgact ttaaaacata
    10021 aattttatca tcgctttttg ctttagaaac gatactgctc tttggtgctt gcgaagtttt
    10081 agaatttgtt ttttctgtat tttttatttg ttcgttagat gatttttttt catttttttg
    10141 aactgttttt ataggttcaa aagttgtttt ttcagtgtct tgagaaatat tttgaacctt
    10201 aatatcttta ataacagcct ttcttaaagc attaatactt gcttcactta taccactttc
    10261 ttttaactca ttagcatatg acttgtcatc taaatttaaa gtatttgaac tgatgatcaa
    10321 tctttttaaa atttcaattt tagttttttc atcttcatga ataacacttt gtatataaag
    10381 gcttttgagc tgatggtgaa attttacttg cacttcactt ttagaaccga taaaattttt
    10441 atcaaaattt gcaagttcat tttcataagc tccaaaaaga gttgtgaaag caaatactaa
    10501 aaatacaaaa attttagcca ttattcacca ttaaccaatt tttccataag ttctttaaca
    10561 ctgataagct tatctaaacg atatccattt gcacctgtaa agaaaagtcc tgtttctttt
    10621 ttgcctgacc acgcatcaaa aagcctatct gctatacaat accctacttt agtcgcctct
    10681 tttccacgcc cacaaggcgc tacacaattg cttatacaat taatctttgg acccattctt
    10741 ttatctacca aatttaaaag attggttcta actccacgag caggatagcc cacaggagat
    10801 ttaataagct ctatatcttc ttctttagaa gctagcaaaa cgcttttaaa ctcttcactc
    10861 gcatcacatt caaaagttcc tatgaaacgc gttcccattt gaacaccact agcccctaaa
    10921 gaaatagcat tttctatatc ttttttatcc caaattccac ctgcagcaat cacgggaaaa
    10981 gacccccaat ttttagcctc ttctaccaca ggagcgatta atttttctag ctgataattt
    11041 ggatctaagc actgctcata agtaaaacct tgatgacctc cactttttgg cccttctaaa
    11101 accactgcat caggcaagcg attgtaacgg ctttgccatc ttttgcaaat aatttttaaa
    11161 gcctttgcag atgaaatgat aggcactaaa gccacatcag gaaaatctgc agtaaattca
    11221 ggtaaatttg taggaagtcc agcacctgaa acaatcacat taaaaccaac ctcacaagca
    11281 tcgcgtgcta ttcttgcata atcattactt gcacataaga tattacaccc caaaggtgca
    11341 tcgccacaaa cttttcttgc attattaatc aaagcttgca aacccttgcg tgagtaaaaa
    11401 ttttcacttc cataaggctt agcgtttaat tctttacttg catactttct ttcttcataa
    11461 tatcctgttc ccacagaaga aataatccca agtccaccat ttaaagaaac tgcagaagct
    11521 aatctatccc agcttatgcc tagtcccatt cccccttgaa aaatgggata ttttatagta
    11581 tgttttccta tttgtaaggg ttgtaaattc attcttttac ctttaatttt gcaaattttc
    11641 ttttacctat ttgtaagatg tattctcctt gttctaaata catttgctcg tcgctaactt
    11701 tttgagaatt tacacttact gcattagcac tgatgcttct tcttgccgca gaagtagaac
    11761 tttccaaacc acattcaacc aaagccttag caagccaaat ttttccttgt atttcaaact
    11821 cagccatatc acttggcaaa gcattttgag aatgaattct atcaaattca gacttagcat
    11881 tattagcctc ttctttggag tgaaaacgct ctgtaatctc taaagctaaa ttttctttag
    11941 cttttttagg atgtaaattg ctttgttcta tatctttttt tatttgcgca atttcttcta
    12001 gacttttttg acttaaaagt tcataatatc taaacatcaa ttcatcacta atacttaaaa
    12061 ttttagcata catatcatta gctttttctg taacaccaat gtaattattt aaactcttac
    12121 tcattttgtt tacaccgtct aaaccttcga gtaaaggcat cataatcaca gcttgttctt
    12181 ttcctatgtt ataaactctt tgaagctgtc ttcccatcaa aagattaaat ttttgatccg
    12241 ttccacccat ttcaatatcg ctttttaaag ccacactatc atatccttga agtaaaggat
    12301 acaaaaactc gcaaatcgaa ataggacttt gctctttaaa tctcttggta aaatcgtcac
    12361 gctcaagcat tctagctaca ctaaaagttg aagtaagctc tactataccc gcagctccaa
    12421 gttcattaag ccaagtagaa ttaaacttaa tctgtgtttt ttctttatcc aaaaccttaa
    12481 aaacctgcgt ttcataagtt ttagcattga ttaaaacttg ctctttatcc agctttttac
    12541 gcgttgcact ttttccactt ggatcgccaa tttgtcctgt aaaatctcca atcaaaaact
    12601 gcacaatagc tccatgtttt tgcaaaaaag ccatttttgt taaaaccacg ctatgaccta
    12661 aatgtaaatc aggcgctgta ggatcaaacc ccgcctttat aaagaaattt tcaccctttt
    12721 cataataatt tttaattaat ttttctattc tttcttcatc aataagctct gcacaaccac
    12781 gcttaacttc tgctaatatt ttttttatat ccataataaa cctttttaac cttctttata
    12841 agcatcattt aaagatgtaa aatctaaaat cttgcaacga gattttaacc tatccttgac
    12901 actatctgga ttaatattat caggaatttc cattgtaatc tcaaaataat ctaccgccga
    12961 atttaaatca cttgataaat taattgttaa tagatttatc tgcattttag ctaaaaatgc
    13021 caaaaattcc gctaaaacac cttttttatt ttccaaagaa aaaatcaatt tataagattt
    13081 agggatgtta gaatcccatt ttataaatac catatcttga ttattatcta tcattttatc
    13141 agctctatcg caaagcttat gatggacaat agcgttacca cctttaacaa aagctaaaac
    13201 agcatcacct ctttttggat ggcagcaaaa atcaaaatcc acattagcaa ttttatggtt
    13261 acaatataga gtaaaatttc ctattttttg ttctttaatc tcatatttat caaaccaata
    13321 tgacttcttg gcgtattttt taagaccatt aactatatct ttcaaatagg cactatctgt
    13381 tgctgcttgt ctaatacgtc tggctaaatt ttctttttct atccaagttt caattctgtt
    13441 tttatcaact ccaaaaataa aacttaacat attaatagaa cttgctagat taatctctct
    13501 gattttttgc ttgcaaaatt cccttatact tgcttttgct tttcctgttt taacactatc
    13561 tatccaagaa cagcgataaa atttatcatt gctagtaacc actcgcacaa tatcgccatt
    13621 tttaagctcg gttaacaaag gcactttaat acgatttaca taagcacttt ttgcatgaag
    13681 ccctactttg gtatgcactt cataagcaaa atcaagaacc gttgcaccac gaggcaaagt
    13741 gaaaatttct cccttaggag aataaactgc gacatcttca acataaagac tatctttagc
    13801 atattcataa agttcaatag cattataatc ttctgcattt tcaagattgt ttatactttg
    13861 cattgaaata tctgtaagcc aatcaagacg aggcgcaacc acactgccat cttctttata
    13921 tttccaatgc gctgctatac caaattccgc aattttatgc atatcaaaag ttcgaatttg
    13981 tgcttctata atacttttag catcaaaaag tgtggtatgt atggtttgat aaccattttg
    14041 tttaggcaag gctatataat ccttaaaacg cgaaaccaag ggattaaaat gtgtatgtaa
    14101 aattcccaaa gctaaataac aatcacttac tttttcaacc aaaattctta ccccaagcaa
    14161 atcaagaact tcttcaatac caatgccttt tctttgcatt ttaagataaa tagaatagct
    14221 atgtttaatg cgtttttgaa tttcaaaact accttgtcta aagccattgc tcaaaaataa
    14281 aagttcgatt ttggaaataa attcatttaa acctaattgc atttcttgat tattagagtt
    14341 gatataattg tcaataagct tatactcatc tggcataaga tatttaaaac taagatcttc
    14401 caaataattt tttatgcttg aaataccaag tctatgggct attggggcat atacaactaa
    14461 agtttcttcg ctgattcttt tttgcttatc ttctcttaga atatcaagag taagcatatt
    14521 atgcagccta tcgcataact tcacaatcaa aaccccaaca tcttcaatac ttgctaaaag
    14581 catatttctg aaagtcaagg ctgatttagt taaacttttt ttagattttg atgaaatgag
    14641 attatcttct ctaatttcta taattttagt aagccctaaa acaagtttta aaacctcaga
    14701 accaaactgc tctctaagtt cttcttcagt acagtttgta tcttcgatca catcatgcaa
    14761 taaagcagct aaaatattgc ttttattttc acttaaaaat ccaaccagtg ttgctactaa
    14821 aagaggatgt accgcataag gctctccact ttttctaaac tgcccttcat ggcaaaatat
    14881 acagtaatct accgcttttt caagaatggc atcatggcca caaatttcga aaagcaaaac
    14941 cttagcagct tctaaatctt tacaattttt tacattatcg attaattgtt caagcaataa
    15001 ttcttcatcg attggtttca actaaaccct ctaaagtgat tttattttct gcaatttcat
    15061 ataaagctat atctgcaagt ttatttttat ttttatcaaa gtctaccaaa ggggttgctc
    15121 catttgccaa ttgttccgct ctttttgcta ccactaaaga aaggcgatat ctatcattac
    15181 ccattttttc caaagctttt gccgctactt cttctattct tttatccata attttctcct
    15241 taattatttt taacggttga acaaaggcta gtatcacctt gtatgatttt aagtaaatta
    15301 ccctcttcaa acatattaca aaccacaata ggaagtttgt tatctttagc taaagctata
    15361 gctgtatcat ccatcacttt aatattatct tgcatagcct catcataact caaagtattt
    15421 aaaaatactg catcatcaaa ttgttttgga tctttatcat aaactccatt aacttttgta
    15481 gcttttatta ccatatctgc atcaatttcc acagctctta aaatagctgt tgtatccgta
    15541 gtaaaataag ggtttccagt acctgcagca aaaaccacaa cacgaccctt ttctaagtgt
    15601 ctttgcgctc ttctcataat ataagtttca caaaatgctt ccatctgaat ggcgctttga
    15661 accctaactt caagtccaga gctttccaaa gcttcttgta tagcaatagc attgataacc
    15721 gtagcaagca tccccatatg atctccactt gtccttttaa tcaatccgcc cttagcagca
    15781 cttactccgc gaataatatt accaccgcct ataactatgc ctacttctat ttgatttttt
    15841 ataagttctt taatctctga agctatgaat tttaaaatag aattttctat accaaagcca
    15901 ttttcacctg ctaaagcctc tcctgaaaat tttactaaaa ctctttttct ctcttgcatt
    15961 atttctcctt atttaacttg aaattatatt ttaaattcca ttaaatttag ctaatttaag
    16021 ctaatgagtt ccaaaggatt gatatgaaaa tttttttgag ttacttcaaa agtaagatca
    16081 ttttttattc tacccactac ggcacctttt ttaatattct taccaacttt aatattagga
    16141 gcaatcttat ctaaatgtgc gtatattgta tgtatgccat tatcatgttc aacaataaca
    16201 actcgagcta gcatactagt atctttagca aaaactattt ttccatctag cacattttta
    16261 acaactgcat cgcttttatt gcttcttaaa actacattct cgttaaaaat tttaagattg
    16321 taaacaggat caacataatt tccaaatttt tgcttcacag taaaagaatc caatggagct
    16381 atggtttttt ttcctgtgta acgcttgact gaacttcctt gatagcttga acctaattgt
    16441 cttatttttt gattattttt tactatttta gtatcatttt tgtttaaatt tgcaccttct
    16501 ttattattaa taatttttaa ttgatttaat gtttttctaa gctcttcttg ctgagcttgt
    16561 aagtcatcga gtttttttgc atatatggtt cgatctgttt tttgtttatt aatttcgcta
    16621 atttgttttt gttttaaact ttgaagcttg actaattgag cgttgtaatc cttaagacta
    16681 tcattgattt tcttaatctg agcttgttta tcatcaataa gtctgcttac tccctcataa
    16741 tctttagaaa ttttaaaaat ttcttcattt aaaactttgt ttaaactctc taaaatttca
    16801 aaagccacaa aactttcttc actttcgata tagccttgag gaataggtaa atcataggca
    16861 aaatctttag ccatcaaaga tataagctta ctttccatat ttgatttact tttaagcaaa
    16921 tcttcatttt ggcttgcaag ggtgtttaac tcttgatttt gagccttagc acttgcttca
    16981 agcttagaag tttgtgaatt taagctttca atttgcaaac ttaaatcttt caaacttttt
    17041 tcaccattta aaatatcact agccaaatct tcaagttttt tatttagctg ttcttgtatg
    17101 cgtttatttt cttctaaact ttttgttttt tcatttatag tgtttgctaa acttatatca
    17161 acaaacaaaa aaaaacaaaa aaagataaga atattttttc tcatctttta accttgaaca
    17221 taaccgtatt tacacacaac aagcaaataa acaaagtagc taaaaaaatt aaagtcaaat
    17281 gcaaaataaa attaataggt ggaaaaataa tatctacagc ctttaagctt tcttggataa
    17341 tagaaagatc aaaaatttgg gtaaaaaagg caagtaaaat aacaaaagca ataaaacaat
    17401 caaccacaac caccttataa agcataaaag atctaaacca aaacggagct ccaaataaac
    17461 acataatttc aatacgatcg gtatgttcat aaagccaaat tctcatctgc tttaaaaaca
    17521 aaacaaaggc aagtaaaata atgataaaca aaaataacca aaaaacaaat ttcatcaaaa
    17581 taagcaaaga gtatatctta tcatgggttt tggaaaaagt ttcaacctta ctaacaccta
    17641 caatatttaa aagttgattt ttaatcgaat ttagttcatt ttgatcgggc aaagaattta
    17701 attttaaagt ataaaatttt ggtagagaat cttttaaaac tttcaaattc ttttcagaaa
    17761 catcattttt caaacgatca attaaaccct taggatctaa agattcaagt ccagcaaaaa
    17821 atggtacttt tgtttttact acattctgat caagttcagt tttgctgaca actataatat
    17881 tataatcttt attaacaagt tcttcataat gctttaaagt tgcatttgta accaaaataa
    17941 attcaaaagc aaacatcata aaaagtaaag gtaaaattaa agataaatgt gttttaaaaa
    18001 atttcattca tttttccatt ttctatatta aaacgacgat aatccactct taaattacta
    18061 ggaattctat gtgttaccac tataacacaa gttcctaaaa gctctctagc agactttaaa
    18121 agagtccata taatatcaga agaatactcg tccaaatttc ccgttggctc atcgcaaagc
    18181 aaaagctttg gattatgagc taaagcccta gccatagcga cgcgttgttg ctcaccaccg
    18241 ctaagttgat taggcaattt atctgcttta aaagttaaat ttacatgctt taaaagctta
    18301 gcagcttgat catgacatac ttttttgcta taacctttaa tcattaaagg caacataaca
    18361 tttttttcaa cactatattc ttgtacaagt ttataatctt gaaaaataat ccctattctt
    18421 tgacgtaatt ttaaaagttc taaatttcca attttattca tcaaagatcc acatacttca
    18481 agtttaccag aaataggttc taaatctcca taaaaagact ttaaaagcgt actcttacca
    18541 ctcccacttt tacccgtaat aaaaacaaaa tcatcatcct taaaagcaaa actcgcttct
    18601 ttaataacta gttcatcata acctaaagta agtttatttg cttggattaa attaggcatc
    18661 ctttttcctt aatttccctt tttaaatttt taaattatgc tttatttttg cttaattttc
    18721 aagaaaaatt atattttaaa ctgaactttt aaaatttctt ttaattcatt tatcgcttta
    18781 atattttctt gaattttaaa tggctcttta aaagcaaaat caatcgtttt atcaagatgc
    18841 aaataacaat gttcaggctt attaaaagct ccaaaagcaa cctttaaaag caaattctca
    18901 tcttgtttat agatgctttc aaaatgcaag aaaaaatcat ctttttttat agtaatattt
    18961 ttaaagttct gctctatttt tttcaaatcc tctttagaaa atttaaccga tgagagatta
    19021 aattcattta actcatagtt tttacactct tggttaaaat tccacaccca aagatcatat
    19081 atattttttt cttgcttttt ccatctatct tcatatttgc ttgaaatttc taaattttca
    19141 ttttttctaa ggctaaattt tggagcagga aaagtcaaaa attgttctaa agtaaaatta
    19201 aaatactcaa aactatctgt tctaagctca aaacgaccat tttgaactaa aaccctagca
    19261 cattctttgc aaaaatcttt cccaataact cgcctatgag gctttttgtc ccaaggaaca
    19321 gggaaatgta aaaaaatctt ttcaactgat tttgatttta atacactcaa taacaatctc
    19381 gcatcacttt ggattagcaa aatattattt acattttgtg ctttagcaag tttagctact
    19441 tgagttaaag ctgggttgta aatttccacc cctaaaatta aaacatttgg attttctttt
    19501 gcttgataaa gcaaatgtct tcctgatcca aagcctattt ctatataaat tttaccttga
    19561 agcttagaca aaagctcatc aaaattatca acgataaatg gtgttttttc aattaaagca
    19621 ttgtttttaa gtccaaaagc ttcattgata atatcctcac aaaaaccttc tttaaagatt
    19681 tttaaagcct tttgcaaata acctatttta gaaggttttg tatgtttatc gcctttaatc
    19741 acaaaaccat tttgtgcttt tttaatctgc agaaaaaaac tctcttcttg aacctttgta
    19801 taaataagac taacattatc attcttagca agccaaagaa attcaacatc atccttgcta
    19861 caaggcagat ttatttcttt gatctttttg cttttaaaat ttggcactac tgagccgcct
    19921 taactttgtt tgaaggttct gaacgaagcc cggctaaatc aatagcaata acttcataac
    19981 tatattccac ccctggcaaa gcttttacat cttttagtcg cttttcttta atacctttaa
    20041 aaactgcatt ttgctccccg ccatagcgtc ttacttcata ctcaacagct ctagtatcat
    20101 tatcactcca ttctaaattt atcccttcgc ttgtgctttg agccaaaata atactaggag
    20161 ccaaagggtt gcctaaagtt ttaccttcta caccatcttt tggcatagga ctttcaagac
    20221 catctttatc caccattgtt actttataat acttgctttt acctgctcct tctactatat
    20281 cctcataaga atttttatca gtctttgcca aaacactaaa aggaaggaag cttgagctcg
    20341 tagaataaac tttataataa gaaaaatctt catacgtagg agcatcccaa gttaaaatga
    20401 ttttactaga accatctgtg ctagcactta aatgctcaac ttgaggaggt aaagccttgc
    20461 ttgtagaact tacaacttga cttgacccac tctttatccc attaaaactc acagcaataa
    20521 ttctataact tgaattttca ttaggcttta aatcactatc gatgtattca gcgtttaaac
    20581 gattttttac ttctgcaatt tttttaaatt ctttatcatc acctttggtt ctttcaataa
    20641 tataagaatc aaccctaaaa tcaggatgcg gacgccaaat aagtttaata cgattaggca
    20701 aattagtcac agcttgaaca aaaggaacag cttcaagtct tggagctgtg ctcacttcta
    20761 taaccttgcc atcttctgaa atttgtcctt gctcattaaa gcttttcatc atataacgat
    20821 acttagtacc aggctctaat ttagtatcta cataatgagt ttgaaactta tctttaatag
    20881 tgcctacaag tttaaaatca ggattttcat cactagaacg atacagataa aatcctttaa
    20941 tattttcatt atataaaggc tcccattcaa aagcaatatt actcatatca ctaagacttt
    21001 ttaaactttc aacctttggc aagctttcat ttacagcagg ctctttactt gaagctagcg
    21061 aattcatttg cgaaacacta caagcgctaa gcaaaagagt taaaaaactc aagtaaaaac
    21121 tcaagcgaaa tcttttcatc attctctcct aaattaattt gttcaaacat aatattttta
    21181 aaatcttcca tcaaaggtgc tttaacaaaa atttgttctt tggtttttgg atggataaaa
    21241 tacaaaaaat aagcatgtaa cattatccta caatcatact tacccttata accatacaaa
    21301 ctatcaccta aaatatagcg atttaaacta gccaaatgcg ctctaatttg atgagttctt
    21361 cctgtaaaaa gcttagcagc catcaaagtt aaattttcag tttttactac atttataaaa
    21421 gctgattttg cgtttttgct gaatttattt tccttatcta tggctatttt tttaatagca
    21481 ttagaaggcg aacgcattaa aaatttttct actataattt tatcttcttt tagtggcaaa
    21541 tcaattaacg caaggtaaat tcttcccatg cttttatctg caagctgttc acttaatttt
    21601 tgatgggtga aattattttt cgctattagt atagatccgc ttgtatcttt atctaatcta
    21661 tggacaagac cagctcttat ctctcctcct aaatttgata aagtatattt tttttctatt
    21721 aaccaatcca ccaaagtggc atttttaacg ctacttgctc catgaacgac taaatttgaa
    21781 ggtttattta aaacaagcaa gtcttcatct tcgtataaca catcaatatc aaaatccact
    21841 tcaaactgag gttttatctc attgcaaagc tttaaacttg caatagaaac aatatcacca
    21901 tttttaagct taaatgaatt tttatcttga attttatcat taacctgtac acaatctttt
    21961 tctataagta aagcaacttg attgcgactt tggtttaatt ttttagccaa aaatacatca
    22021 agccttgaat tttcatctac taaaaaagtt tgcatttttt ccttagaggt tttgataaat
    22081 ttaaaatttt agtttataat tatagcttta tattaccaac tgaaggcaaa ttttgtttag
    22141 attagataga agaattttaa ctcattttga ctatatgcaa cccattttat ttttacccat
    22201 aattcttatt tcatttttct taatctttga agctaatcct tttttagcag aaaaacaatt
    22261 tgtttatgcc tgtgtgggat tgtttgcttt tatggttttt ttcttctttc ccataaggaa
    22321 atttatttgg attattcctg ttgcttattg gattaatatt tttttattgc taagcgtaga
    22381 tatttttggg gttgaaaaat taggtgctaa aagatggctt gaaattcctt ttactcactt
    22441 tactatacaa ccttctgaaa tttttaaacc tagttttatt ttaatgcttg cctatcttat
    22501 ttatcaaaat cctcctccaa aaaatggata caaacttaaa caattcatca aacttagctt
    22561 ttacatcatc ttgccttttt tgctaattgc aaaagaacct gatttaggaa gtgctatggt
    22621 tttactactt gttggttttg gagtgctttt tatcatggga gttcattata aaatttggtt
    22681 aagtattgtt atagctataa gtgttagctc tcctattatt tatacacatc ttttaaaacc
    22741 ctaccaaaag caaagaattc atgattttat ttcagaaaaa ccaagttatc aagtagccca
    22801 atcaatgata gctattggaa atggtggttt aaccggaaaa tctcaagatg aagctacgca
    22861 aactcatttt aaatttttac ctatttcaac tagtgatttt attttcgctt acatgataga
    22921 aagatttgga tttattgggg gattgacatt aattatattt tatattttac ttatttttca
    22981 tctacttagt ttaaattata aacttaaaga tgattatttt gctagagttg ctattaattg
    23041 tgttgcatta tttattttta tttatgcggc agtaaatatt tcaatgacta taggttttgc
    23101 accagtagtt gggatccctt tgcctttttt tagttatggt ggaagttctt ttactatttt
    23161 tatgattttt tttggaattt tacagcattt aatcactttt agatattttt ggacggatat
    23221 aaaggctaaa taaaatattt ttaagcatta ataagatata attttatctt ttaattcaac
    23281 ttaggcggat ttatagctca gttggttaga gcaaccggct cataaccggt tggtcgcagg
    23341 ttcgagtcct gctaaatcca ccattctaca tataagctat agactctttc tttaaaaaat
    23401 aacttttagt tctttaaata tttcaatctt atataaaaaa gtatgtgatg tgattttttg
    23461 aaagataaag tggtggttag aggcagaatc gaactgccga cacgcagatt ttcagtctgc
    23521 tgctctaccg actgagctat ccaaccacaa tgtttgataa agtaaaaatg taattgtatc
    23581 tttttttctt taatttaagt ttaaatacaa aaataaaatt ttatttccct taaagtttta
    23641 ataagataga atacccgctt tagatcatta tcaaatggaa attttttgaa acaatttgga
    23701 ctagatagac gaacttttaa aattttacta gctggttata ttattattgc attgtttggg
    23761 gctttattgc tacattcaag ctgggcacat acaactccta ttgatttttt ggatgccttt
    23821 tttacaagca catctgctgt tagtatgaca ggattagtag ttaagaacac tgcggttgat
    23881 tttaccttag caggacaaat tattatctta gctttggtgc aaattggagg cttgggatat
    23941 atgggtatag gtttatttgt ttatatactc atacgcaaaa aagttggttt tagtgcaaga
    24001 aatttactaa aagagtcttt attttatcca tcaatggatg gtttatttaa attttttaaa
    24061 aaggttttgc tgttcatttt tactatagaa ttgataggcg ctatacttct caccatgcgt
    24121 tttacccttg aaatgaattt taagaaagct ttatggtttg gaatttttca ttctattagc
    24181 gcttttaata attctggatt tactatattt gaacatggac ttatagctta taaacatgat
    24241 atagcaatta atcttattat cacttctttg attattattg gagggcttgg atattttgtt
    24301 ttggttgaat tatacttttt tcaaagaaaa aaattgcaaa atttaagcct acatacaaaa
    24361 atggttgttg ttgcaagtat ttttcttatt ttctcttcaa cgcttattat ttttgctttt
    24421 gaatactcaa atcctcaaac tataggacat ttttcatttt ttgataaaat tttaagctca
    24481 tattttatcg ctattaatta ccgcacagca ggatttaata ccttagatat gggacatttg
    24541 catgatgcaa gcttattttt tggatcattg tttatggtta ttggtggtgc accaggtgga
    24601 acagctgggg gtatgaaagt aacaactgta atggttttat tactctatgc ttattggagt
    24661 atccgcgatg gaagagttag aatttttgga catgaaattc caagagaaac tatatctaaa
    24721 gcttttatta tagctgtagg ttcagctgtt tatatagtaa tagctgttat tttgctttcc
    24781 ttgctagagt caaaatttga ttttatagcc ttgctttttg aaacttcttc ggcttttgca
    24841 accgtaggaa tttcagtagg aaatggtgga aatttatctt tatgcgcttt gtttagtgat
    24901 cctagcaagg tgattatcat cattatgatg ctaagtggta ggataggtgt ttttgctttt
    24961 ttactctcgg tattcaaaca agacaaagct attcatttaa aattccctga aggaaaggtt
    25021 aatttataaa ggtaaaatcg tgaaaaatct taattatgga atcataggac ttggaaaatt
    25081 tggatcagtt gtagcagatg aactcattgc tggaggtcat actgttatcg ttgcggataa
    25141 agatgaggaa gctttaaaaa gtatacaaaa tcctccaagc tatgcttata ttttagattc
    25201 tacaaatatt tcagccctaa aagaagcagg ctttcatgat gttgaagttg ttattgttag
    25261 cataggagaa aatgttgaaa aatcaatcct tactcttatg gcgcttaaag atataggtgt
    25321 taaaaatatc attgctaaag caacctctaa tatccatggt caaattcttt ctaagttagg
    25381 tgcaacaaag gttatttatc ctgaaaaaga aagtgctaaa agactagtaa aagaattttt
    25441 aactaaagat gctgattatg aagtttttga tctttcagca aatactatac gagctattaa
    25501 gatcaatata gatgaaaaat tagcaggaaa ttctttaaaa catgtagcac aaaatatgaa
    25561 agtgatttct tataaaaaat taaatagcga ctgggaaata ctacctgatt tagaaaccac
    25621 gacagtttat agtggagatg ttgtaattct ccttggaaca gttaaggaac ttagagaatt
    25681 tgaacactaa gcaagattta aagccttgca agcctttaca aaacgcttta aggctgtttt
    25741 ttctttggta gaaattttat gatatataac ttcatctaaa taatatctaa catcttttat
    25801 atctaaatcc cttgttttgg catatttttg aagtatataa tagggaattt taatctttgt
    25861 ttttggaaat tttttcaaaa tttgtttata taaagctttt ttttgcacac aagaaaatct
    25921 agcaaaaaca aaaggcaatc ctgttttttc gtgccatttt gcacataaat cgatatattt
    25981 agaaggatct tttagataaa gctttaaagc cttatcacct ataattactt ttccatcttg
    26041 ttttaatact ttagccagag cgtttgaagt tgctgaactt ggatctttgg catttgatgt
    26101 atttttttct actaatacac ttaaaactct tttattagca caaataccca aatctaaatt
    26161 tttatatttt tttctagcac tttctatgct tgaaatgata gctgcatcaa ttcttctata
    26221 aaataaatct ttatttagct tacttggaac tcctttttta tactccatac ttgctttata
    26281 accattaggt aggggatatt tcttaagata tatatgtaaa ggtaaaagat taatataatc
    26341 aatttttcca aaaatcatct cttttaaaga gtgttaaaca ctctatctcc tgcatctcca
    26401 agccctggga taatataacc tttttcattt aaaccttcat caatacaagc cacaaaaact
    26461 tctacatcat catgcatttg gctaaatttt ttcaaacctt gtggagcagc aagtatggat
    26521 ataaatttta tttttttaac tccttggctt tttaaaaaat tacaagcctc tatagcagtc
    26581 ccacctgtag caaacatagg atctataaca atagcggtgc gtttttttgc atctttggga
    26641 agtttttgaa aataaaaatc cgcctttaaa gtctcttcat ttctcacaaa ccccaaaaat
    26701 ccaacacttg catcaggaat catcttaaaa acactttcaa gcattcctaa tgcagctctt
    26761 aaaataggac aaatcataat cttttcatca agttttttta ctatagtttt ttgtataggt
    26821 gttgaaattt caatttcttt taaagaaaaa tctttactca cttcaaaaag caaaaaagat
    26881 gaaatttcat cgattaacat acgaaattga aagggctttg tctctttagc ccttaaaatt
    26941 cctaacttat gttcgatcaa tggatgattg atacaatgaa tatttttcat tttaagcttt
    27001 caaaataagc tttctcgtta aaatttttta ccttagccac accatctttt accgcagctg
    27061 ctgctacagc tgtacttact gcagctttta ctctttcatc aaaaggtttt ggtatgacat
    27121 aatctcttcc aaattctaag gtacttaaat tataagcctt tttaactgca tcacttacag
    27181 gaagttttgc aagatctgct aatgctttag cagccgctac tttcatattt tcagtgattt
    27241 tacttgcacg cacatctaaa gccccacgga aaataaaagg aaaacctaaa acattattga
    27301 tttgatttgg ataatcactt cttcctgttc ctacaatcgc atcttttcta agtctagcta
    27361 catcttcagg catcacttca ggaataggat ttgccaaagc aaaaatcaca ggatcttttg
    27421 ccatgcttaa aaccatttca tcatcaagaa tttttggtgc actaagtcct aggaaaacat
    27481 cagctccttt taaaacttct tttaaagtct tttccttaga atcaacagca aattcaagct
    27541 tttgaggagt taaatcattt ctatctttag aaatcactcc tttgctatct actaaaataa
    27601 tattttcgac ccctaaattt ctatacattt tagcacttgc tatacctgca gcacctgcac
    27661 cacttacaac tactttgatg tctttaaatt ttttaccact tatttccata gcattcataa
    27721 gtcccgcagt tgaaataata gccgttccat gttgatcatc atgcattaca ggaattccta
    27781 aatcttgcaa agccgcttca atttcaaaac attttggcgc agcaatatct tctaaattga
    27841 tcccgcccac agttggagcc aaagacttgc aaaaatttac aatctcttct atactatgaa
    27901 catcaatttc tatatcataa gcattgacat ttgcaaattt tttaaacaaa caagccttac
    27961 cttccataac aggttttgaa gcctgtgctc ctatgtttcc aagtcctaaa acagcagaac
    28021 catcactaac tatagctact aaattagcct tatttgtata agtataagca agctcattat
    28081 ctttagcgat ttcaaggcaa ggttctgcaa ctcctgggct atacgccaaa gatagatcat
    28141 ggcttgtagc cattggctta cttggtacaa tatcaatttt cccacctaaa tggtatttta
    28201 aagcttcttc ttttaaattc attttatttt cctctaactt ttaaaaaatt ttctattctt
    28261 tttttgcact catcaacctc taaaaattct aatacttcaa aaatactagg acttaccgca
    28321 ctccctgtta aagctatgcg tataggctga gccaaatctt ttaactttgc ttcttttttt
    28381 tctaaaaaat catttgtaaa atcttcaaaa tctttacctg ttttttgatc tttaagtgta
    28441 ttagcaaatg cttggagcaa ttctaaatta tttttgttaa taaatttttg tactgcattt
    28501 tcatcataat tttgcggcgc attaactata ctttttgcac cattgataat atcatgcaag
    28561 gtttttgcac gctctcttaa taaatcaagt aaaaatcctg ccttttcata aacagataaa
    28621 tcaaagccaa gatccttaag ctgacggtta atctcttcaa aaggcaaagt tttaatgtaa
    28681 tgagcgttaa gccattcaag ctttttagca ttataacaag atgcgctttt attaatatga
    28741 taagggtcaa aaagtttttt caaatcttct aatgaaaaaa cctcatcatc accatggctc
    28801 caacctaaac gcacaagaaa attaagcaaa gcttgaggta aaattcccat ttctttgtat
    28861 tccataacat cagttgcccc atgtcttttt gaaagctttt taccatcttc tccatgtatc
    28921 atagccacat gaaaaaattt aggaatttta aaacccaatg cctcataaag cacaatttgt
    28981 ttaggagtat ttgaaagatg atcatctccg cgaatcacat cacttacccc cattaaagca
    29041 tcatcaataa caacagtaaa attataagtt ggagttccat cacttcttgc aatgataaaa
    29101 tcatccatta tatcctctgc tttaaatctc acctcgcctt taaccccatc ttcaaaaaca
    29161 atctcgccac tttgaggcgc tttaatacgc acaacaggtt ctataccctg aggtggcgtg
    29221 cctgtaaatt ctctatatct tccatcatat cttgggcgtt ctttggcggc ttcttgcttg
    29281 gcacgcaatt cttctaattc ttctttactc atataacaat aatacgcctt gccttcatct
    29341 aaaagctttt tgacatattc tttataaaga tcaaaacgct ctgattggta agttacttct
    29401 ccatcatgtt ctaaaccgca ccatttaaaa gcttcgataa ttgctttagt agcttctttg
    29461 gaatttcttt ttaaatccgt atcttcgata cgaagtaaaa aatttccacc attttttcta
    29521 gcgtataaat aattataaag agctgttcta agtccaccta tgtgcaaata ccctgttggg
    29581 cttggagcaa aacgcgttgt aagtttttcg tgcatttttt gccttttctt aaatttttat
    29641 tgatataatg cgatatttat acttaaataa aggtttgaaa tgaaaaaaat tttattaagt
    29701 tttgcatttt ttgcaagttt agctagtgca aataccatta atgctatagc tgtagttgta
    29761 gataaagagc ctatcacaac ttatgatata gatcaaacta tgaaagcact taaaattgat
    29821 agaaataaag ctttaggcgt actcatcaat gaaaaaatgg aaatttcaca aatgaaacaa
    29881 ctaggtattg tagtcaatga tctagagctt gatgatgcta taaataaaat gcttgctcaa
    29941 aacaaaacga ctttaaatgc tttcaaagca aatttaaaat ccaaaaatca aagctatgaa
    30001 caatttcgtg caaattttaa aaaagattta gaaaaaagaa agctttatga aaaaatcgca
    30061 agtatggcaa aaactgattt tagtgatgat ggagcaaaaa aatttttcga acaaaataaa
    30121 gataaattca ctttttatac acaaattaat gcaaatattt atctatcaaa caatcctcaa
    30181 actttagaaa atatcaaaaa tacaaaaaaa acaatcctta aaccacaaaa tgcatcttta
    30241 aacacaagta atgccgatcc aagactttta gggcttttat cacaaattcc tgttggaggc
    30301 ttttcccctg ttttaaatgg aaaaaatggc tatgaactct atgaagttaa aagcaaagat
    30361 ggggcacaaa ctcctgaata tgaacaagtt aaaaatgaag ttttaaacgc ttatgtaagc
    30421 gaacaaagac aaaatttcat acaggattat tttgataa
//
LOCUS       DARGBD010000010        30394 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.010, whole genome shotgun sequence.
ACCESSION   DARGBD010000010 DARGBD010000000
VERSION     DARGBD010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30394
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.010"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(142..1161)
                     /gene="flgS"
                     /locus_tag="SFZ04_000362"
     CDS             complement(142..1161)
                     /gene="flgS"
                     /locus_tag="SFZ04_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HEG8064668.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASYDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
     gene            complement(1165..2043)
                     /locus_tag="SFZ04_000363"
     CDS             complement(1165..2043)
                     /locus_tag="SFZ04_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8064669.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDVFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNHFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     QDENLCFVGEVKFKNKKICKNILNLLKSKVKSLNLTPNYYIIISKNGFSKEFDKICEQ
                     NLLLLDLNDFKILLEE"
     gene            2079..3353
                     /locus_tag="SFZ04_000364"
     CDS             2079..3353
                     /locus_tag="SFZ04_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEG8064670.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQIYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIIKLSH"
     gene            complement(3350..4174)
                     /gene="purU"
                     /locus_tag="SFZ04_000365"
     CDS             complement(3350..4174)
                     /gene="purU"
                     /locus_tag="SFZ04_000365"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEG8064671.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIYNNKTIIF"
     gene            complement(4171..5289)
                     /locus_tag="SFZ04_000366"
     CDS             complement(4171..5289)
                     /locus_tag="SFZ04_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEG8064672.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESTFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     QKEYLKYANQAFYLDDISDFELAKIAFEMPLKKWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(5258..5749)
                     /locus_tag="SFZ04_000367"
     CDS             complement(5258..5749)
                     /locus_tag="SFZ04_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HEG8064673.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(5746..5994)
                     /locus_tag="SFZ04_000368"
     CDS             complement(5746..5994)
                     /locus_tag="SFZ04_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG8064674.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(6073..6246)
                     /gene="tatA2"
                     /locus_tag="SFZ04_000369"
     CDS             complement(6073..6246)
                     /gene="tatA2"
                     /locus_tag="SFZ04_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HEG8064675.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKAQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(6256..6594)
                     /locus_tag="SFZ04_000370"
     CDS             complement(6256..6594)
                     /locus_tag="SFZ04_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HEG8064676.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(6587..7501)
                     /locus_tag="SFZ04_000371"
     CDS             complement(6587..7501)
                     /locus_tag="SFZ04_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEG8064677.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDVFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(7506..8030)
                     /locus_tag="SFZ04_000372"
     CDS             complement(7506..8030)
                     /locus_tag="SFZ04_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HEG8064678.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(8027..8809)
                     /gene="napH"
                     /locus_tag="SFZ04_000373"
     CDS             complement(8027..8809)
                     /gene="napH"
                     /locus_tag="SFZ04_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HEG8064679.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLVALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(8806..9546)
                     /gene="napG"
                     /locus_tag="SFZ04_000374"
     CDS             complement(8806..9546)
                     /gene="napG"
                     /locus_tag="SFZ04_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HEG8064680.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFDAKKATNYLNDGEL"
     gene            complement(9564..12338)
                     /gene="napA"
                     /locus_tag="SFZ04_000375"
     CDS             complement(9564..12338)
                     /gene="napA"
                     /locus_tag="SFZ04_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HEG8064681.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEALDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            complement(12585..13112)
                     /gene="tpx"
                     /locus_tag="SFZ04_000376"
     CDS             complement(12585..13112)
                     /gene="tpx"
                     /locus_tag="SFZ04_000376"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEG8064682.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGAGAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVILVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(13211..13897)
                     /gene="peb2"
                     /locus_tag="SFZ04_000377"
     CDS             complement(13211..13897)
                     /gene="peb2"
                     /locus_tag="SFZ04_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HEG8064683.1"
                     /translation="MLVYGPGGPAPVLKELALKFEEKTKEKVIVTAGPTPAWIDKAKE
                     NADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIVRPNNPKNIKNFEDILKDG
                     INVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAKNSKAAVDEWNNNPNIDAL
                     IIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLENKKALEFVDFIKSKEAQKV
                     WKKYTWKEVK"
     gene            complement(13993..16023)
                     /locus_tag="SFZ04_000378"
     CDS             complement(13993..16023)
                     /locus_tag="SFZ04_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEG8064684.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILKLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
     gene            16151..17173
                     /locus_tag="SFZ04_000379"
     CDS             16151..17173
                     /locus_tag="SFZ04_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064685.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSNVNTNNNTIQKQETNPLLDENQSLNNDTFNTSIS
                     ENNQSLNNDTNTSNNINTNENKQILDTDKGKLKQENKQAKIEALKKEISKQQKILERE
                     RAVKKELQSNKSNKNKYLNTAREYLNIGKNSRLEPELSTENMKVYVLDGKFLSQYRIN
                     LLKDMLSIIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSP
                     YLNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEII
                     EISSIK"
     gene            17196..19808
                     /locus_tag="SFZ04_000380"
     CDS             17196..19808
                     /locus_tag="SFZ04_000380"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEG8064686.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREEFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYAKFVDKEVILPISKKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEY
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            19813..20823
                     /locus_tag="SFZ04_000381"
     CDS             19813..20823
                     /locus_tag="SFZ04_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEG8064687.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGVIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            20820..21731
                     /locus_tag="SFZ04_000382"
     CDS             20820..21731
                     /locus_tag="SFZ04_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8064688.1"
                     /translation="MNEENISIISAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLTIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            21923..22696
                     /locus_tag="SFZ04_000383"
     CDS             21923..22696
                     /locus_tag="SFZ04_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8064689.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIITKKGLVKFKDKALKTPLDIID
                     NPKKIKFIELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            22745..23515
                     /locus_tag="SFZ04_000384"
     CDS             22745..23515
                     /locus_tag="SFZ04_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8064690.1"
                     /translation="MNLFKIIILACTLNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            23525..24301
                     /locus_tag="SFZ04_000385"
     CDS             23525..24301
                     /locus_tag="SFZ04_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8064691.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWRLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTNLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            24385..25047
                     /gene="flgA"
                     /locus_tag="SFZ04_000386"
     CDS             24385..25047
                     /gene="flgA"
                     /locus_tag="SFZ04_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HEG8064692.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGILSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            25044..25607
                     /locus_tag="SFZ04_000387"
     CDS             25044..25607
                     /locus_tag="SFZ04_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEG8064693.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKTE
                     NQANLEEICQENFKYTYFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            25647..26123
                     /gene="coaD"
                     /locus_tag="SFZ04_000388"
     CDS             25647..26123
                     /gene="coaD"
                     /locus_tag="SFZ04_000388"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEG8064694.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            26114..26692
                     /locus_tag="SFZ04_000389"
     CDS             26114..26692
                     /locus_tag="SFZ04_000389"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEG8064695.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            26689..27915
                     /locus_tag="SFZ04_000390"
     CDS             26689..27915
                     /locus_tag="SFZ04_000390"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEG8064696.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEEVAKNYGFTFINIPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCLQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            27912..29747
                     /gene="speA"
                     /locus_tag="SFZ04_000391"
     CDS             27912..29747
                     /gene="speA"
                     /locus_tag="SFZ04_000391"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEG8064697.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            29748..30386
                     /gene="cysE"
                     /locus_tag="SFZ04_000392"
     CDS             29748..30386
                     /gene="cysE"
                     /locus_tag="SFZ04_000392"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEG8064698.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
BASE COUNT        10917 a         5002 c         4306 g        10169 t
ORIGIN      
        1 atagaattat aatttgagtt atcattgata ctaaagatac tcatattaat tccttgattt
       61 agattttttg ccttcaacct aaatatatta aaataatata agcaagatct gttccacttt
      121 ggggtgaaaa gaaaatattt atcacaccaa aggtaaggta aaataaaaat tcttaggatc
      181 actttgaaaa cttaactctc ccttatgagc gtttatgatt tctttagaaa gagacaagcc
      241 aagtccattg cctttaagtt ttgttgtttt aaaagcttca aaaaccaatt tctcatcttt
      301 tatttcacaa ccattatcat acactctgat gcatattttt tcattatcat aacttgctaa
      361 aattttaatc ataggctttt cacattcgct ttcttctatc gcatcaatag cattataaat
      421 caaattttgc aaaaccaaac caagaagagc tttatcagca caaatctgct tatccaaaaa
      481 agatatttca aagtctattt gagaagtgaa attataagag ttaatggcac tttcacactc
      541 ttcttttaac tctaaaagat taaaatttaa agcattgatg tgtacaccct tagtaaaaag
      601 tagagttgaa tttacgatac gctccactct agcaatagcc ttttggattt caagaactat
      661 atgcttattt ttaagctcac tacgagcaaa aagggttgaa gcaagtaaag atatagatcc
      721 aataggattt cttatctcat gtgccaaatg agccgctaca ctacccatgc ttgcaagcct
      781 ttcattgcgt ttttcatcgc taatatctgt agctgaaact atagtttttt cattatgcgc
      841 tatgattttt accgcataaa acctaccttc aaattcaagc tcatcacgaa ttttatcaag
      901 actaatgata ctaagtaatt ttggattttt caaggcttct tgattttgta aaataatatt
      961 tttttcttta tctaaaatcc aaagcgcact aggcaacacc tctataatct catcaaccat
     1021 tgcgcgtaag gagttatagt tttcatttaa agttttgtat tcattttcta ttacataagt
     1081 ttgttctata agactttcta agcctttttg tagggtttct ttttcatttg agtctaaact
     1141 ttttaaaata ctttcattca tttatcattc ctctaataaa atcttaaaat cattcaaatc
     1201 aagtaaaagc aaattctgtt cgcatatttt atcaaattcc ttgctaaaac cattttttga
     1261 gattataatg taataatttg gagtcaaatt taaagacttt acttttgatt ttaaaagatt
     1321 taaaatattt ttacaaattt ttttattttt aaatttaact tctccgacaa aacacaaatt
     1381 ttcatcttga taataaagat caagttctaa attcttatcc cagtagcttt gcactccatt
     1441 gatattgaat tttttctcaa gcaattctct agaaagttgt tcaaaacaaa aactttgata
     1501 aagctcaaat ttttccttaa tgcattctaa aacttcttta taacgatttt gcaaaataag
     1561 cttttcattg ggctttaaaa aataaaaaaa gaaacgagta aaatggttgc taaatataat
     1621 cttatcttgg acaacataag atcttagttc ttttttgatt ttttgtcttt tatcttttat
     1681 ttttttagct tccttactat actcaagttt tattatacct gtttctaaaa gatatttaag
     1741 tgtagataaa gctttaaaat gctgaatttt tctattgata gaaaaacgct tgcgattgtt
     1801 tttagctagt aaagtaagag cgtaagaact tgtttcatcc aaggcgaaat aacttttaat
     1861 ttttagataa tcatcaagca aaattcgctc tatatttgta aatacatcgt cttcaaaatt
     1921 taaaatgttt aatttttcaa aaccttcaaa cacactataa aaatcaaaaa gcttacttaa
     1981 agacaaattc ttatgcaaat ctacaaagtt cttaaatttt atatttttcc ttttataaag
     2041 catttttata gtataatttt agcaaatttt tataaggatt gtatttgcaa atttcagatt
     2101 taaaaaaaga attgatctta aaaaaaggta ttttgcattt tgacttcaca gcaagtgctt
     2161 tagctctaaa atgtgtagaa aaagaaattt caaaaattct cccaacctat gcaaacacac
     2221 attctgatag ctctttgaat tcttttaaaa ctcaacaaat ttacgaacaa gcaagaaaag
     2281 atataaaaaa aagtttatca ttagatgaaa attttgccct tatagcctgc ggaacaggat
     2341 caagcagtgc tattaaaaaa tttcaagaat tgatcggcat ttacattccc cctcttgtaa
     2401 aagaaagata ttttacgcaa attgataaaa ataccttacc tttagttatc gtagggcctt
     2461 atgagcatca ttctaatgaa ctttcatttc gagaaggctt gtgcgaatgt attagaattc
     2521 ccttggataa aaatggggaa attgattttg attttctaga aaaaacttta caaaaaaaca
     2581 aaaaaagaaa aataatcgct agcttttctt tagcttcaaa tgttactggg atattaagtg
     2641 attacaaacg catttctgaa atggttcgta aatttaaagg gatagttgct tttgatgcat
     2701 ctagtttcat tccctataaa aacatatctt gtcaatacta tgatgcgttg tttataagtt
     2761 ctcataaatt aatcggtggt attggcggtt ctggactttt agctatcaaa aaagatcttt
     2821 gtggaaacaa gcctagcttt gcagcaggtg gaactgtggg ctatgtttct cgcacttcac
     2881 aatgctacct ttgcaatgaa gaagctttag aagaaggagg aacacctgga attttacaac
     2941 tcattcgcgc tagcttagct tttaaaatca aagattctat agggattaaa aatatagaaa
     3001 aaaaagaaga aattctaaaa gattattttt ttgaaaaact aaaaactata cctaatttaa
     3061 ttttatacgc aaagaattta aaaacccgat tgcctatttt tgctttcaat atcaaaggaa
     3121 tttctccttt tgatatcgct tacgaactta gtaaaaaata ccacatagaa acacgcgctg
     3181 gatgtgcttg tgctgggcct tatggtcatg atttgctagg cttaaaagat aatcaaaaac
     3241 ttaaaacaaa accaggttgg ttaagaataa gcttgcatta tacgcatgaa aaagaggata
     3301 ttgattattt ttttaatgct ttaaataaaa ctataataaa attatcacat taaaatatta
     3361 tagttttatt attatatata aaaattctat cttcaaaagc caaatcaagt gcttttgaaa
     3421 gaacatcttt ttctatattt ctacctgctt gctgcatatc ttgccaagta aattcatggt
     3481 ttacaggcga aacagcttga gtgataatag gaccttcatc aagattatta tttacaaaat
     3541 gtgccgtagc tccaattatt ttaacccctc tttcaaaggc ttgtttataa ggatttgctc
     3601 ctataaatgc aggtaaaaaa gaatggtgaa tatttataat cttgccttca aaatgcctaa
     3661 caaaatcagg agataaaatt cgcatatatt ttgctaaaac caaataatca aatttatatt
     3721 gttcaagaca ttttaaaatc tgattttctt gctctttacg atctaaattt tcagcgctga
     3781 taaaatgata aggaatttca aatttctcaa ctaaatcctt taaagagttg tgatttgaaa
     3841 tcacagcttt gatatttgct tcaagttcgt tactataatg ctttattagc aaatctccca
     3901 aacaatgact ttctttagta gcaaaaacaa cgatatcttt ttttctcttc tcgcaaagct
     3961 ctatcaaggc ttcttgtcca agcatagcct caagcgttcc tataaaagct tctttatcaa
     4021 actcaccttc taaaagagca cgaaaaaaaa acattccttc gcctacaaat tcatcgtttt
     4081 ttactatatt gatatgatat ttaaaaataa catcagaaat tctatagatt aaaccttttt
     4141 gatctttggt gcaaattttt aatacagaaa tcatttagct aaacctttta tatattcttt
     4201 taattcattc tctcttgctt cttgaagctt taagccaaga attttaccac aaaatccagc
     4261 atttatgaaa tcttttgcta aaattttact ttcaaactta ttctcataaa gccctaatct
     4321 tttagcttgc tcaatacgct ttttactcca aagtccaagc catttcttca aaggcatttc
     4381 aaaagcaatt tttgctagct caaaatcact tatatcatca agataaaaag cttgatttgc
     4441 gtattttagg tattcttttt gaagtttggt tcttttaaaa aatatatctt tttctaaatt
     4501 aaaaaaattc aaatacaaat acaagaataa agcatcgctt tttacaaatt ctctactttg
     4561 tctgagcaaa ttttgaaatt ccaaactctt aaaagtactc tcaaagccga aaatctgttt
     4621 ttctaagtca agttcttgca aatatctata gccaacatca agtctagggc ttttaaagaa
     4681 tttataaagc tccgcattga tcctatcttt gctaagatca gttatatcca tactttgcat
     4741 caatttcaag ctttcgctag ttatcttaaa gttaaacctt gaagcaaata ctaccgctct
     4801 taatactctt aaactatcct cttgaaagct ttgtttatca atatgcctta aaaagcctgc
     4861 tcctagatct tttaatcctc cataaaaatc taaaaactca tcgttaaaaa gattaatcat
     4921 catagaattt atggtaaaat cgcgtctttt ggcgccaagt ttttcatcat tacaaatttg
     4981 aacttcaaaa cctttatgtc catagcttat tttattttcg gttctagcaa gagctaaatc
     5041 ataattttta aacttataca caaaaaaact ttttccaaag ccttgtgcgc ccaatttttg
     5101 cataatcttt tcaaaatctt taggttttat atcataaagc tctatatcat agtcacaaat
     5161 ttttaagcct aaaaacaaat ccctaacgct acctccaacc aaatacgctc gtttggtata
     5221 aggctttaaa aactcagcaa taaactgtaa atcgggatta ttttttaagc ttatcttcga
     5281 tatttgcaag taaaaactct aaaaaattta tggtcaagtt taacctattt tcaagatcat
     5341 ctttttttat gctatttaaa ccttcaaaaa gaactaaaat tctctctcta agatgtttta
     5401 aaaaaatatc ctcattaagc gtttgaacct ctgtcataac actaggattt aaaatttcac
     5461 tttgtaaaaa aggctcttct tttttaaact ctttattttc ctgagtagaa atttcaatat
     5521 tattttgtat tttttgctct tcttcaaatt ttgccataga aattttatct tctaagtctt
     5581 gcggagtatc aagctcttcg catacaaact ccataggtgg taattcatct tttatttcag
     5641 tttttctatt taattcttgt tcttttaaaa tttcattttg tcttctttgc tcttccatga
     5701 tagagctaac ttcgctaatg gtttttttag ctaaatcttc caaattcata tttttatcaa
     5761 ccacctttta aattcattaa tttcttcatc gcttttcata ttaataaaaa aatccaacat
     5821 ttgagtgttt aagtctttat gcttggatct aaaaccacta agacgacgaa ccgcatcgat
     5881 agcgttttga ttatccggat cttcttttaa gatattttta taaatttcta aagcttcgtc
     5941 ttttaaccct tgagcctcat agatggaagc ttcagtgact gtatttttca tcactgtttc
     6001 ctaaaatttt tctttaattc tagcaaaaag ctttttaatt tatctttaag aaaataagat
     6061 gttttttaat gtctattttg ttttaaacag tttttctata tattcttttt tttctttctc
     6121 taaactagaa tttaattctt tttgttcttt tttaacttgc gcttttaaat cttgattttt
     6181 aaaatacaca taatcaattc caaaaataac accaattata ataagcaatg ggattaaaaa
     6241 taccatcttt acactttaag aaaattgatt aaatacacta ccatagtagc gaacattctc
     6301 agcattttca tttttttcta tcgtttctat tgcaccacta ttgattgctt tttggatatc
     6361 atcatttaaa tcttgataag aaaaaaccat attaatactg ataatatttg gcaatttctc
     6421 aagcatttta taagagttta actcatcttc taaattttca ctttcaatca caactataat
     6481 cttttcattt tcacaaagtt ctacagaaca aaaaggaatt tcagatatag ccttttttaa
     6541 atcatttata tattcttctt ttgctaaaat caaaacacta gaaagattat tcatcaatac
     6601 tcctaaacat tatactatca ccaaagcctg aaacgataaa atctttattg tttaaaaaaa
     6661 taataaactc actcatcaaa ttttcattat taaaagtttt aacaggctta aaatcacttg
     6721 tgctaaaaac ttcactaact ccagcttcat tatcgctata aacagcgaat tctccactag
     6781 gacttaaagc acaagtatat atcaaaaaat ctttttgcaa aaaattttgc tcttcatttt
     6841 ttacaactcc tatacgccta tccgttccac aacttaaaat aacattattt ttaaaatcta
     6901 cttgatagat attatcttta tgcattttat catagttttt taacatcttc caatttttca
     6961 aatcaaaaag ttctacttcg ccactctcaa aacctgcaac tagtctactc ttatcttcat
     7021 ttaaaactgc atcattaaga ctagaatggg aaaaattaaa tttttttata ttttttaaac
     7081 ttttatcaat caattctatt tcagaaccaa tagaaatcaa aagataagtg ttttcattga
     7141 taaaaaatgc ttttattatg ctattttctt cgagcttttt gatttgtaaa ttttccttat
     7201 aaaaacttaa atttttagca ccaaaatcac cctcgctaag tattaaaagt gtatgtttaa
     7261 aaacatcaat gttataaatc ttagcaaaat catcaccata ataattttta atctttggta
     7321 aagataaaag ttcttttaaa cttttatctt taatgttata ttgtaaaatt tcacctttat
     7381 cagtgcctat atataagttt tgcttatcaa gctttaaagc tgttatatta gcatttaatt
     7441 tcagctcata agcataagac aaaacacaaa aaagactcaa aataaaaaga aattttttca
     7501 tttatttact ttacaccctc attaatcaca tcaattaaat ttgaacgact ttttaattgt
     7561 tcatttttaa attcaggttt aaagctattt cccactaaag gttttgcatc actttgtgga
     7621 acatgacact gagtgcaatt aaaacgacta tcgctaatca tatctcctgt ggttttattg
     7681 tgtctaaaat cataataatg actagcagga agtggagttg caccagcatc tgctgctata
     7741 gccttatcat ggcagcttaa gcacatattg ttatctttag ttataggtaa caaatcttca
     7801 atagcatgcg gaattaatgg tggtgcattt tcataagaac gctcaaaacg agtagattcc
     7861 ccaggttgta aagttgtgaa atttgcttcc actaaattta ctttattttc attttctaaa
     7921 cttgcttttc taagtccaat ttgttccgaa cttaccccac tattcattgc acaagcggca
     7981 aaaaatacca ctgcagcact tcctaataaa accaatttct tcttcattat ttattcctta
     8041 aatcaaaaat attaaaattc aaagcatcat cattacaaac ttctatacat cttgcacacc
     8101 ttatacactc tcctgatttc acgctagtac tttcttttcc aaccatccac aaaacctgtt
     8161 tttcaggaca aatacggata cattcataac atttagtgca tttatcacta tcatgcttta
     8221 ttttaagcaa agcaaaacga gaaataaaag cataaaaagc tcctagtgga caaaaatgtg
     8281 aacaaattgc cctaggactt aaaaaagtat caatacaaaa aagtataaag gctacaaaaa
     8341 tccaagaact tgtagcaaaa ataatccctc tatgtatcat tcctatataa gaaaaacttt
     8401 caaacacagg caatgaaaat acaaaagaaa ggactaaaac caagaccaat acaaaatagc
     8461 gtaaattttt aggcaaaatt aaaaatttat tattaagggt taatttattt cgcacaaaag
     8521 cagcaaaatc tgtgattaaa ttaacaggac aaacccaaga gcaaaaaacc cttcctaaaa
     8581 gcaaaccata gataaaaaat ataatcaaag ctcctattaa agccactaaa tctatactcc
     8641 agcttgctag aatgatttgc aaaaccgcaa aaggatcgct taaaggtatg gtattaaaaa
     8701 gtctagaaga acttaaattt ccctgcaaga taaaatctgt agctttaaaa ctaaaaagcg
     8761 ctaaaattcc aagctgaacg atgcgtctag caattaaata cttcatcaca gttctccatc
     8821 atttaaataa ttggttgctt ttttagcatc aaaatgtttt gaagtatctg cattttttat
     8881 acgaccttca tctttttcat cccagccttt tacataatga gatcctgctt ttcccaatac
     8941 atactccctt ggcaaaacac gaatggccgg tttttcagta atacaagcca gttcacaaag
     9001 cccacaacct acacacactt catgatccac actaggtagt aaaaaagcat gtttggcggt
     9061 gcgttcattg cgtttaagct caagttttaa agccctatct atcaaaggac aagctctata
     9121 acaagcatca cattgaattc cccagtgtgc cacacaagaa gcactatcaa caatagcaat
     9181 acccattttc aaagattcta taccctgctc taaatgcttt ttatctaaag catcagttgg
     9241 acattctcta atgcaaggaa tatccttaca aagatagcaa ggaatttctc ttgccttaaa
     9301 aaaaggcgtg ccattttttg gactatctaa caagctagca agctttaaag tatcataagg
     9361 acaggctttt acacaaagcc cacaacgaat acatttgctt aaaaatctag cttcatcttc
     9421 agccccagga ggacgcaaag cataattatc atcggctttt aaagccaaat tagccaaaaa
     9481 tccacctcct gtacataaac atgcagcctt aaaggcacta acgaaaaatt ctcttctacc
     9541 tttcatttaa tcaaaaccct aaattaagcc ttataaattt ttacagcaca ttttttaaag
     9601 tcagtttgtt ttgaaagcgg acaagtcgca tccaaagtaa ctttattgat atatacattc
     9661 tcatcaaacc acggcacata cacaagtcct acaggcggtt tgtttcttcc acgcatatct
     9721 actcttgctt ttactttacc acgacgagat tccacccaaa ccaaatcacc ttgatttaag
     9781 cctaatttct ctccatcttt ctcactcata tagcaaagtg cttcaggcac agcacggtaa
     9841 agctcaggca cacgcatagt catagttcca ctatgccaat gctctaaaac ccttcctgtt
     9901 gcaagccaga acggatactc tttacttggt ctttcaggtg ctttcataaa tggcctaaag
     9961 aaaattttag ccttattttt aatactgtgc tctttttcat ctttaggagc tattaaatcc
    10021 ccatttgtaa gcattttgtt aaaatcacca taaaaagcaa aatctgaatt tggagccgct
    10081 tttttagcat aataatcaaa tttagtatta aatctccact gtgtttcctt gccattaacc
    10141 acaggccatc ttaaacccct tactttatga taggtatcaa aatccgctaa atcatgtccg
    10201 tgtcctaagc caaatttacg atattcttcc caaagatatt tttgaacgaa aaagccatag
    10261 cctgtaaatt cttttccatc actgccttga atttttctct catcaccttt aacatcggta
    10321 ttatcaaagc cttttgcgat ggcatcgttt ggattaaagc tttttgcttc tttattggca
    10381 aatagtacat caaaaagtgt atcatcttcg ctataaccca tagcttttgc ctcttctaaa
    10441 acacttggca aggtaagctt attatccact ttttgctctt tccaaacttc tttaagctta
    10501 aagcgttttg caaattctaa aatttgccaa gtatcactca tggcagcacc tacaggtaag
    10561 acttgttgtt tccaatgttg agttcttctt tcagcattac cataagcacc ccatttttca
    10621 taaatcatag cgcttggtaa aataagatca gctacttttg ctgaaattcc aggataacaa
    10681 tcacttacaa caataaaatt atccatttct cttgctgctg caatccagtg atttgcattt
    10741 gcagtgtttt gccatggatt attcacttgc acccatgcaa atttaatttt tccatcttct
    10801 aaatctctca tgatattaag ataaggagaa cctggttttg ggttgatagt ctttgcagga
    10861 actttccaaa ttttttcaga aatttctctg tgttttggat tggctacaac catatctgca
    10921 ggcaaacgat gtgagaaagt tcctacttcc ctagctgttc cacaggcact tggctgtcct
    10981 gttaaagaaa aggctccact acctggttta gcttgctttc ctagcaaaaa atgtaccata
    11041 taagcttgtt catttaccca agaacctctt gtgtgttgat taaagcccat agtccaaaaa
    11101 cttacgactt tgcgattttt ctctatgtaa agattagcta attcttgaag ttttttctta
    11161 aaatcttcca aagactcatt atcatcacct ttggctactc ttgcagtgta ttctaaagta
    11221 taaggggcta aacctttttt aaattcgtca aaagaaattt cccagttttt atcagccaca
    11281 ccttgatgtt tcatttcaaa tttatcaccc gctttaacgc caagataaga taaagaagta
    11341 gcctcttcat cgtctaaagt gattacattt tctttttcaa ccgtatcttt ttcactttct
    11401 ttaaattttg gatgatttgg attatttctc ataccataac caatatcagc ataaccagtt
    11461 gcaaatacgc agtgatcttt gataaatttc atatccagag cctctggatg attataaaca
    11521 atctctcttg ctatgtagtt ccaaatagcc aaatctgtat ttggtttaaa aataatttca
    11581 atatcagcaa tatttgaagt acggttagaa aaagtgctta gattcacaac tttaacctta
    11641 tcaagattgc ttagttttct atcacttact cttgaccaaa ggattgggtg catttcagcc
    11701 atattagctc cccaagtgat aatagtatct gtaagctcta tatcatcata acagcctgat
    11761 ggctcatcta caccaaaagt ttgcataaaa ccaaccactg cagaggccat acaatgtctt
    11821 gcatttggat cgatattatt tgttctaaaa cccgcttttg caagctttaa agcagcataa
    11881 ccttcttgga tagtgtattg cccactacca aaaatcccta tacctgtaac gccgagttca
    11941 ttgtaggctt ttttaaattg tttttccatt tcatcaaagg ctctttgcca agaaacttgt
    12001 tgaaatttgc cttttttatc aaattcgcct ttttcattca tgcgaagcaa aggcataaca
    12061 agacgatctt caccatacat gatcttagca ttaaaataac ctttgataca attaagtccg
    12121 cgatttacgg gtgctgcagg atcacctttt gttgctacga ttttgccatc ttttctagct
    12181 atcataattc cacagccagt tccacaaaat ctacaaacag ctttatccca tttccaatct
    12241 tcttcttgcg cgccaagcat agagcttgga acactaagcc ctgcaacact agcagcactt
    12301 gcaatagcgg tatttttaat aaaatccctt ctattcatcc ttattcctcc aaaataaaaa
    12361 aatcatctta ttataaaaaa tgaagtataa aaatctcttg aaattttaat aaaaataata
    12421 attttaaagc tctattttat aggagtttta ttgtcctttt tatattatta ttacacaaaa
    12481 taaatattaa aaataatcaa cttaacaatt aaaatataat caacttaaaa taataaaaaa
    12541 atgaagatat aaaaattaag ccctaagaat gggcttaatc aaaattaatg gcaaccacaa
    12601 ccaccgcagc agctagagcc accaaaaaat gcatcaagtt ttgcaatatc tggcatttct
    12661 gtgatttcat ttacaagttc tttatatgcc actttaccct ctttaatcac aaatacggca
    12721 cgagctaaaa gcccttctaa agcaccttca tttatcaaaa caccatattt ttcaccaaat
    12781 tcttttgcca caaaatcact tgcaacactt aaattttcaa taccttctgt actgcaaaat
    12841 cttcccatag caaaaggtaa gtccatactt actagaatca cttcagcacc attgtaactg
    12901 gctacttttt tattaaattc tctagcctct gtagcacaaa ctggtgtatc taagcttgga
    12961 acacttaaaa tgatttgagt tttacccgct gcaccgattt caatcacgct taaatcttta
    13021 gctttaagat ttaccttagg agcacctgct ccaacttcta ctgaatttcc tttaagtttt
    13081 acaggatttc ctttaaaatt tactgtactc atttaatttc cttttttgat attttaaaca
    13141 ttattgcaat taatgtttta ggagtgatta tatcctataa atattaatta ttttttaatt
    13201 tcactcaaaa ttattttact tctttccaag tatatttttt ccacactttt tgagcttcct
    13261 tactcttaat aaaatctaca aattctaaag cttttttatt ttctaaacct ttttttgtag
    13321 gagcaatttc agctgcacga taaatcactg catttttatc tttgataaat aaagctttat
    13381 catcgcctaa agcctttgcc caatgagacc aaatgattaa agcatcaata tttggattgt
    13441 tattccactc atctacagca gctttggaat ttttagcata aatttttata tttttacgta
    13501 attttaccaa attttctctt tttgcacttt ttaaagccat atcttcataa agtccaactt
    13561 gtcctgcacc atcaaccacc ataacattta tgccatcttt taaaatgtct tcaaaatttt
    13621 taatattttt tggattattt ggacgcacga taatacctga tggacgcaca tttaaaacgc
    13681 ttaaattttc caaacttaaa cttggaattt ttttagcaaa atcatccatc attgaagtat
    13741 tgcctgaaaa aatcaaatct gcattttctt ttgctttgtc tatccaagct ggagttggac
    13801 ctgcggttac aatcaccttt tcttttgttt tttcttcaaa ttttaaagca agctctttta
    13861 gcacaggagc gggaccacct ggaccataaa ctaaaatttc agcatttaaa aaacttgctg
    13921 ctgctaaact taaaaattaa tatttttttc ataaaataaa cctttcttta taataatata
    13981 aaggaaattt tatcaatcta tagttaactc tcccttgcaa agccctgctt ctataagaaa
    14041 acgagaagga gcgaaagaag tttttttatt tttatcatat ttagcatagc ttaaataaag
    14101 tatatttttt gccctagtta ctgcaacata aaaaagcctt ctttcttctt ctaaacttcc
    14161 acccattccc ataagctttt gattaggaaa gcgaccttgc gcaagatcaa tcacaaaaac
    14221 aagatcaaat tccaagccct tgcttgcatg tacgctaagc aaattaactc ctttgccact
    14281 actcatttca cttgcaccta aagttagaaa attataatac ttataaatat cgctataatt
    14341 ttttgtaagc tcttttaaga cattgaattt tgtttctatt ttttctaaat tttcactctt
    14401 tcttaataaa tccacctgtc ctgctttatt tgttgctctt ttggttgcaa gttcttcaca
    14461 aatttctcta taaaaagaat tttcacaaat taaatttacc aaagtcaaag aatgttttat
    14521 ttccatagct ttttttaaaa aaagataaat tttttctaaa tttctagcac ataaatcatt
    14581 gatttttgaa agttttaaaa taggatgtgc atcaaattca ctctcaaatt taaaacgagt
    14641 ttcgctggct aattcttcta aatccgcaaa aagcccaagt tgataatttc ttttttgatg
    14701 attttgcaaa tttacatttt tatcaggatc taaaaaacct tttattaaat ttccatgccc
    14761 taattttaaa agtgcgtcaa aaatttcttt tgctaaaact ccacccacac ctttggtgta
    14821 ttgaaccaaa tgaataaaag ccataatatc cttaggattt accacaagag caagcataga
    14881 gctaaaagct ttaacttcta aactttcaaa aaaacttcca cttccctttc tcacacttgc
    14941 aatgccctgc tcccttaaag ctacttcaac cccatcagca cttgagttgt tgcgaaaaat
    15001 cacggcaatt tcttccaaac ttactccgct tgtaagtatc attttggcta tattttgata
    15061 ctgatcaaat aattcttcaa aagtaagcaa agatggggct ttaaactcat catttcttgt
    15121 aacaataagt tcttttggat ataatctttc gttatttaaa atcactttat tagccaaagc
    15181 taaaatactt cttgatgaac ggtagttttt atttaaagaa aaaatttttg catctttaaa
    15241 acgatcttta aacccaccta tgatattaat atccgctcca ttgaaagcat aaatactttg
    15301 atcataatcc cctacgcaaa acaaactttt actatgaaaa gcctctatta aggaactttg
    15361 caaagtattt gtgtcttgat attcatctac taaaatttca tcaaattcat atttttcttc
    15421 ttttaaaaga tcttttagat tgataagcaa gtcattaaaa tctacataat taaaacgctt
    15481 tttttcatta tcatattctt ttaaaatatc ttcataaatt tcagcataaa tactttgatc
    15541 ttcgtagttt tggcaaaacc aagtataaaa atcttgattg tgcgctttgt tttgaaacaa
    15601 agaataaaga tcatataaat aacttgattg ataaggtttt atatcactta aatgcctaaa
    15661 agttcttttt tcatagacac ttttaagtag agtttttaac tcgcttgctt gctttaaggc
    15721 tatattttta tccgcatttc taagtaaggt ataagccgta ctatgaaaag ttcctgcaag
    15781 tattttactg gtaatatttt tatcaaaaaa tttccctaaa cgccctatca tttctttgct
    15841 ggctttattt gtgaaagtta aaagcatgat tttttgaggt gccactccct tgcttaaaag
    15901 ataagaaatt cttgcaacaa tagtagaagt ttttcccgtc cctgcacttg caataacaag
    15961 attgtgtcca aaatcagcag tagcagcaag atattgttca ttatttaatt ttgaaagtgg
    16021 cattattttc cttataaaag ttaaaattat aaaaaaaaat tacttaaaaa tataaaaatt
    16081 taaaattact ttatattaga ttatagtaca atgctaaatt atttaacttt ctgtttttaa
    16141 gggatagcaa atgaatttga aaattttttc tattattgtt ggcatattaa ttgctgttat
    16201 tgtgatatta ggtggaacat attattatct ttttgaatat tcaaaaccaa agaattacac
    16261 cttaaatacc aacacttaca ccgaacaaaa atcgtatacc aataactacg ataattccta
    16321 ttcaccctcg atccaaacca acaatagttc atcaaatgta aatactaata acaataccat
    16381 ccaaaagcaa gaaacaaacc cattattaga cgaaaatcaa agcttaaata acgatacatt
    16441 taatacatca ataagcgaaa acaatcaaag cttaaataat gacaccaata caagtaataa
    16501 tattaataca aatgaaaata agcaaatttt agatacggat aaaggaaaat taaaacaaga
    16561 aaataaacaa gccaaaatag aagctcttaa aaaagaaatc agtaaacaac aaaagatctt
    16621 agaaagagaa agagctgtaa aaaaagaact tcaatcaaac aaatcaaaca aaaataaata
    16681 tctaaatacc gctagagagt atctaaacat aggaaaaaac agtcgtttag aacctgagct
    16741 tagcacagaa aatatgaaag tttatgtttt agatggaaaa tttttaagcc aatacagaat
    16801 caatctgtta aaagatatgc taagcattat acaagataat gcaaaagatt attatctaag
    16861 tatttttgtt aaaatgctac caaaagggga aatgaaatta actatctata acaaagaaat
    16921 tatcttttca gatatgaaaa aagcttataa atatattagt ttagatagat taagcccata
    16981 tttaaacaat ccaaaagaat taaatgaaca tgtagcacgt gaagaaattt tagaaagact
    17041 taaacttcaa attaaaaaag atggcaaagg aagtgatttt tctaaacata tcaaaagttt
    17101 gaaaactgga cttaatacag cacaatattt cttcccgttt tgtgaaatta tagaaattag
    17161 ctctattaaa taagctaaaa caataaaggc aaataatgta tgataaaaat ttagaaaaag
    17221 agtattatca aatttgcgaa gaacgcggat attttgaaat cgatggcaat aaaaccatac
    17281 aagaaaaaga taaaaatttc tgcattatga tgcctcctcc taatgtcact ggagttttac
    17341 acataggaca tgctttaact tttactctac aagatattat gacgcgttat aaaagaatgg
    17401 atggctataa ggttctttat caaccagggc ttgatcacgc aggtattgcc actcaaaatg
    17461 ttgtagaaaa acaactcctt gctcaaggca ttaaaaaaga agaactaggt agagaggaat
    17521 ttatagaaaa agtctgggag tggaaagagc aaagcggtgg aaaaatttta gaccaaatga
    17581 gaacactagg catcactcct gcatggagtc gcttgcgttt tactatggat gaaggtttgg
    17641 ttaatgccgt aaaaaaagcc tttgtagaac tttatgataa aagacttatt gtacgtggaa
    17701 actacatgat aaattggtgt actcatgatg gcgctttaag tgatatagaa gttgaataca
    17761 aagaaaacaa aggaaaactt tatcatatta aatacttttt aaaagatagc gatgaatttt
    17821 tagtagtagc cacaacgcgt cctgaaactt tttttggcga tactgcagtt atggtgcatc
    17881 ctgatgatga acgctatgct aaatttgtgg acaaagaagt gattttgcct ataagcaaaa
    17941 aagccattaa aatcatagcc gatgaacatg tagaaaaaga atttggaaca ggagttgtaa
    18001 aagttactcc cgctcatgac atgaacgatt atgaagtagg acttagacat aatttagatt
    18061 ttataagtgt ttttgatgaa aaaggaattt taaacgaaca ttgtttagag tttcaaggtt
    18121 tagaacgctt agaagcaaga gaaaaaatcg tagccaaact tgaaagtctt ggttttatag
    18181 aaaaaataga agagtataac aatcaaatag gatattgtta tcgttgcaac aatatagttg
    18241 aaccttatat ctccaaacaa tggtttgtaa aaaaagaaat cgcccaagaa agtatagaaa
    18301 aagttgcgct tggagaaagt aaattttacc caaatcactg gataaatagc tttaatgctt
    18361 ggatgaaaga tttaagagat tggtgtattt caagacaact ttggtggggg catcaaattc
    18421 ctgtgtatta ttgcgaatgc tctcatgaat gggcaagcca acatacgcct aaaacttgtc
    18481 caaaatgtca aagtcaaaat ttcaaacaag atgaagatgt gcttgatact tggttttctt
    18541 caggactttg ggctatgagt actctaggct ggggaaatga aaattggggt aaagataaaa
    18601 tttggtctga aaaggattta aaagattttt atcccaattc tttactcatt acaggttttg
    18661 atattttatt tttctgggtg gctagaatga tgtttcaaag cactaatgcc ttacatcaac
    18721 ttccttttaa agatatttat ttacatgctc ttgtgaaaga tgagcaaggt agaaaaatga
    18781 gtaaaagcct tggaaatgtt atcgacccaa atgaaagcat taaagaatat agtgctgata
    18841 ttttacgctt tactttagca cttcttgcta tacaaggacg cgatattaaa cttagcaatg
    18901 ataaactttt acaagttaga aattttacaa ataaaattta taacgctaca aattatctgc
    18961 ttttaaatga aagtaaattt gaagatttgg aaaatatcac acttcattca gaattagcaa
    19021 aatatattta tgccaaattt caaacttgtg ttaaggatgt aagagaaaat ttagacaatt
    19081 atcgctttaa tgatgcggct aatactctat ataaattctt ttgggatgat ttttgcgatt
    19141 ggggtataga gcttagcaaa gccgaaaaat caagcgttaa agaacttggt agtattttca
    19201 aagaagcttt aaaactttta aatcctttca tgccttttat cagcgagtat ttataccaca
    19261 aactaagcga tacagaactt aaaacaagcc cttctattat gataagcaaa tatccaaaat
    19321 ttaaagaaca agataaaaat atagaaaaaa tcttttcttt gctcatagaa agcatagtta
    19381 gtatccgccg tgctaaaagt ttaatcgatc ttggaaattc taaaatagaa aaagcttata
    19441 tcaaatttaa cgataaaaaa atcaaagatg aaatcaaagc ttatatgaat tttatcataa
    19501 tgctcgcaaa gtgcgagcaa atagaattta gtgaagaaaa attaccaaag gcaatatgtg
    19561 atgttagcga gaatttagaa atttttatta cgcttgaaaa tgttgattta agtggtattt
    19621 taacaagact tgaaaatcaa aaaaataagc ttgaaaaaga aagtttcaag cttaactcca
    19681 tgctttcaaa tgaaaaattc atcgctaacg cacctaaaga ggtggtggag caaaataaag
    19741 aagctctaga aaatttaaaa attcaacttg aaaaaatatc agttgaactt caaaatctaa
    19801 gaggttaaaa atttgataaa aataaaaaat ttaaaaaaat attatggcaa ggaactcgtg
    19861 ataaacgatg tttctttgga gattaaaaag ggtgaaattt acgccatagt aggtcatagt
    19921 ggagctggaa aatccactct tttaagatgt attaatggac ttgagaatta tcaagaagga
    19981 agtttaaaag tctttgatca agaaattaaa gatttaagtc aaaaaaaatc aaaagagtta
    20041 agaatgctta gaaaagatat agggatgatt tttcaaaatt ttgccctaat ggagcgcaaa
    20101 aatgtatttg aaaatgttgc tatgccttta agaacacact atactcagtg taaatttcat
    20161 gccaagcttt ttaataaaga atacatgagc gaaaaagaaa ttgcccaaaa agtcaattcc
    20221 ttacttgaaa tcgtagggct tgatcataaa aacaaatcct acccaagaga actgagcgga
    20281 gggcaaaaac aacgcgttgc tattgctaga gccttagctt taaacccaaa aattttactt
    20341 agtgacgaag ctacttcggc tcttgatcca aacactacaa aaaatatttt agagcttata
    20401 tctaaaatca atgctgaatt tgggattact gttgttttag taactcacga aatggatgtg
    20461 gtaaaagaca tagctcaaaa agctttatta cttgaacatg gacaaatcat aggaagtgga
    20521 gtaattgatg agcttttttt aaggcctaat gccaaaatga aagaattttt aggagaaagc
    20581 gacttcttgc ctgagcacgg acttaatatc aaactttact ttccaaaaga agttgcccaa
    20641 aatagcgtca ttactcatat ggcaagaact ctaaatatag actttaacat agtttggggt
    20701 aaaatagaaa aactgaatgg aaaagccttg ggaaatttag ttataaatat aaatgaaaag
    20761 gataaagaca aggttcttga ttacatagaa aaaagtggag tattatggga ggtggcatca
    20821 tgaatgaaga aaacatctct atcatcagtg ctttttttag tagaatttct caatttttta
    20881 atgaattttc ttggcaggat attaaagaag tgagtttaag ttctatcacg agtttcaatg
    20941 aaaattatga aaacatttta aaacctgcgc ttaatgaaac aatttatatg agtttaatgg
    21001 ctgtactatt tggattttta ttggctatca ttcctggaat tttacttgct atttgggata
    21061 aaaatggaat taaagaaaat aaaatcgctt atagtatttt agattttatt accaatatat
    21121 tacgcgcctt tccattttta attcttatag ttgttctttt accactttct aaaatcatag
    21181 taggcacaag cataggtaca aatgctgcca tagttccatt aactatcgga atagctcctt
    21241 acttggcaaa gatgcttgaa agcgctttta aagaaataga caaaggaatc atagaagctg
    21301 caaaaagtta tggtgctagc aatattcaaa ttattttcaa ggttatcttt agtgaagctc
    21361 ttcctgctat aattagcgga attaccctaa ctttgatctt taccattggt ttttctgctc
    21421 ttgctggaac tgtcggtgga ggaggattag gagatgtagc tattcgctat ggttatgaaa
    21481 gatttaacaa agaagttatg attcaaactg tagttatttt acttatatta gttcaattag
    21541 ttcaaattct aggtaattta ttttatactt gggctaaaaa tagtaaaact acatatatca
    21601 ttgccactct attgatttta cttggagtta gtatagttat caatataaac aatgatgaaa
    21661 atttcttttg gcaagtaatt gtttttatct tatttttagg aagtttgctt tataaaggtt
    21721 tcaaaaaata aggagattat atctcctttt aagataaata taagtttttt taagtaaaat
    21781 ttaaacaaaa aattaaagga attaaaatga tgtatcagat gcgttaatct gactatcaac
    21841 aagtttttat atgcttcttc ctgatagtca gagtgaattt attaagatta aagcaagcac
    21901 aaaatgacta aaaaggaaaa aaatgaaaat caaatcttta tttatagcaa gtattttaac
    21961 attaagtctt aatgcaaatg cattagaaac catcacagtt gcagcaactc ccgtccctca
    22021 tgctgaaatc ctagaacaag taaaacctga tttagaaaaa caaggctata aacttgaaat
    22081 caaagaattt acagattatg ttttacctaa tctagctgtt gataacggag aagccgatgc
    22141 aaattttttc caacacactc cttatttgga agaatttaat aaaaacaaag gcaccaaact
    22201 tatcaaagta gctgccatac acatagaacc tatggctgtt tactccaaga aatataaaag
    22261 tctagatgat attaaagaag gggttaaaat cgccattcca aatgatccaa ccaatgaaag
    22321 tagagcttta gatattatta caaaaaaagg tttggtaaaa tttaaagata aggctttaaa
    22381 aacacctctt gatattatag acaatcctaa aaaaattaaa tttatagaat taaagcccgc
    22441 acaacttcca agagctttag atgatgttga ttttgctgta attaattcca actacgctct
    22501 ctctgcaaat ctaaatcctg caaaagatag cgtatttatc gaagataaag aaagcccgta
    22561 tgcaaacatt cttgttgtaa gagtgggaca tgaaaacgat ccaaaaatca aagccttaat
    22621 ccaagctcta caaagtgata aaatcaaaca atttatcata gaaaaataca acggatctgt
    22681 tttacctgct ttttaatttt gtcccttacc tagggacttt tttcttaaat acaaaggagt
    22741 ttttatgaat ttatttaaaa ttattatact cgcttgcact ctaaatttat ctagcctatt
    22801 tgcacaaaac attactatag gagccactcc aaatcctttt ggtagcttac tagaactaat
    22861 gaaagatgat tttaaaaaca aagggtatga gcttaaaata gtagaatttt cagactatat
    22921 tttgcccaat cgtgcattag aggaaaaaga acttgatgca aatttatatc aacacaaacc
    22981 ttttttagaa gaatacaacc taaaaaaagg ttcaaattta attgcaacaa cgcctgtact
    23041 tatagctcca gtaggagttt atagtaaaaa aatcaaaaat ttagaaaatc ttaaagaagg
    23101 tgctagagtt gctataccta atgatgcgac caatgaaagc agagctttag agcttttaga
    23161 gaaagcaaaa ttaatagagc ttaacaaaaa tactctaaaa accccattgg acataaacaa
    23221 aaatccaaaa aaacttaaat ttatagagct taaagccgca caacttccaa gggctttgga
    23281 tgatgttgat attgctataa ttaattctaa tttcgcactt ggagctggtc tgaatccaag
    23341 taaagatact atttttaggg aagataaaaa tagcccttat gtaaattatg ttgtggtacg
    23401 ctcagaagat aaaaatagcg aaaaaaccaa agtaattgat gaaattttaa gaagcgataa
    23461 atttaaagcc atcattaatg aacattataa agatatatta atcccagctt tttaggagta
    23521 tagcatgaat attaaaaaaa tatttttaag tgttttattt acaattagcc ttagttttgg
    23581 ggcagataaa accataatca taggtgcaac accaacgcct tatgctgaaa ttttaaattt
    23641 ctctaaaccc ttatttcaag aaaaaggttg gaggttgata gttaaggaat ttaatgacta
    23701 taatatacct aatatcgctt taaatgagaa agatttagat gcaaatttat atcagcataa
    23761 acctttttta gatgatttta atacccacaa aggaacaaat ttaagttctt taggtgctat
    23821 tgttttagtt cctatggcta tatattctaa ctccataaaa gatataaaag acattcctaa
    23881 tggtgctaaa atcgctatac ctaatgatgc taccaatgaa agcagagctc ttgatttact
    23941 agctaaagca aatttaatag agtttaaaag tcaaagcacc cttaaaaccc ctattgacat
    24001 aagtaaaaat ccaaaaaaac ttaaatttat agagcttaaa gccgcacaac ttccaagagc
    24061 cctaaatgat actgatttgg ctattattac cacaaactat gctcttggag caggcttaaa
    24121 ccctttaaaa gatggtattt ttatggaaga taaagatagt ttatatgcta ttgttttagc
    24181 tacaagaaaa ggtgaagaaa caagtcaaaa aagtcttgtt attaaagaaa ttttaacaag
    24241 cgataaaatt aaaaatttta tcatagaaaa atacaaaggc tctgttatcc ctacttttta
    24301 actctataca aagccttcta aaggctttgt taaacttata aaagctaaaa tactatttat
    24361 tgcattataa ttcttaggat aaaaatgaaa attatttttt taactttttt tattgtgata
    24421 aattatatcc aagcagctag tttagaagaa atcaaaacag cactagctaa agaatttaga
    24481 aataattttc ctaaaattat aatttctcaa attgatttaa aaataacatc attgcctaaa
    24541 gattttgatc aatatgaatt tctaagaatc gctaatgggc gttttaatca agcacaaggc
    24601 tttttaaggg ctgaatttaa aactccgcaa aatatacaaa aaaatgtatt ttttagatat
    24661 ttcattcaag caaatttaga agttttaaaa agcgaacgcg ctataaaaag aggagataaa
    24721 cttggagctt ttgactataa aagcgtattg attgattttg ataaagttcc tttaaatgcc
    24781 ttaaccttag atgatgtaga taatcttgta gctaaaagca atattaacaa aaacgccatt
    24841 ttaagagcaa atatgtttaa aaccacagct ttaatacgcc gaaatgatcc tataatcggg
    24901 attttaagcg aagcaaatgt tgatgtttta atcgaacttg tggctttgca aagtgcaaat
    24961 atgggcgaaa ggattcgtgc aaaaaacaaa gaaggtaaag ttatgcaagg catcgtagtg
    25021 ggtaaaaata ggatgattat acaatgaagg ttttattagg aatttctggt tcaagcagtg
    25081 tcaatttagg cttaaaatta ttaaaaaatc tagaaaacca atgcgaactt tattgcattt
    25141 taacccaagg tgcaaaactt agcttcaaaa ctgaaaatca agcaaattta gaagaaattt
    25201 gtcaagaaaa ttttaaatac acttattttt tagatgataa aaatttaagt ctaagtgtag
    25261 caagtggatc ttttggaata gaaaaaacca tcattgctcc ttgttcaatt tcaagtttag
    25321 caaaaattca cgctggtttt gcagacactc ttttaatgcg tgctgcagca gtggccttaa
    25381 aagaaagaaa aaaacttatc ttaggcgtac gcgaaatgcc tttttctact ttaaatttag
    25441 aacatatgtt aaaacttagc caaatgggag ttattatcgc ccctcctatt atcgcaagct
    25501 attctaaagc aaacaatcta gagcaaatgg aaaattttat cgcaggtaaa tggttagatc
    25561 ttttagaaat aaaacacaat ttatatgaaa aatggcaaaa tttttagttt aaatttgtta
    25621 tatttttaaa aaaaattgga gcaaaaatga cttgtttata tcctgggact tttgatccta
    25681 ttaccaacgg gcatttagat gttataaaac gggctttaaa aatttttgat gaagtcatcg
    25741 ttgccatagc aaaaagtgaa cataaaaaac cttgctatga tttagaaaaa cgcaaagaac
    25801 tagccctgct cgcaacacaa aatttaaaaa atgttaaaat cattgctttt gataatttac
    25861 ttgtagattt agccaaagaa ttaaaagtta atactataat ccgtggactt agagcagtga
    25921 gtgattttga atacgaattg caaattggct atgcaaatca cgcactttgg gaagatatgg
    25981 aaaccattta tcttatgcca agtctaaaac atgcttttat ttcaagttct attgtgcgtt
    26041 ctatagtagc acatgggggt gatgtaagtt ctcttgttcc aaaagaaatt ctaccttttt
    26101 taaaggatca atcttgtatg tagtttttga aggtattgac tgcgtaggaa aaagtacgca
    26161 aatttcactt ttaaaagaaa tttacaaaga tgccattttc acactcgaac ctggcggaac
    26221 agaacttgga aaacatttaa gagaaatttt acttaataaa actcatccta ttaacaaaag
    26281 agctgaactc ttgctttttt tagctgatcg tgctcaacat tttgaagaaa tcttaaaaac
    26341 caatcaaaac aaactcatta ttagcgatag aagttttatt tcaggcatgg cttatgccaa
    26401 agattttgaa aacgatttgc tttttgcttt aaatagtttt gctttagaaa atttttttcc
    26461 acaaaaaatt atctttttaa aaggagatgc aaaccttatc caagaacgcc tcagtcaaaa
    26521 agaactagat agtatagaaa aacgtggcat tgagtatttt ttaagtgtac aggacaaact
    26581 cgaaaaagtg cttcattttt taaaagaaaa aatttctgta gaaattttaa cacttgacgc
    26641 aaaagaaagt aaagaaaaat tacaccaaca aataaaggaa tttttacaat gattaacgct
    26701 ttaaaaggaa tgaaagattt attagataaa gatgcatatt attatgaaaa agtgattaaa
    26761 acctgcgaag aagtagctaa aaactatggc tttactttta tcaatatacc gcatttagaa
    26821 ctttgcaccc tttttaaaag aagcgtagga gaaagttctg atatagtagg taaagaaatg
    26881 tatgaattta tcgataaagg cgaaaatcat gtttgcatgc gtcctgaagg aactgctggg
    26941 gtggtgcgtg cctatataga aaaaaaactc gataaaaaca ctagtgtgaa aagatggttt
    27001 tatcatggtt ctatgtttcg ttatgaaaga cctcaaaagg gtcgcttaag agaatttcat
    27061 caatttggag ttgaaagcct tggcatacct aatgtttatg aagatgcaag cattatttta
    27121 atgctagtag aaattttctc acgccttggt attgatttta aacttcaact taattcttta
    27181 ggctgcttac aatgcttgcc aaaataccgc gataggctcg ttgaattctt agattccaaa
    27241 gaaggttttt gtgaagattg tttgcgtaga aaaaatttaa atcctattcg tgtcttagat
    27301 tgtaaaaatg agcattgtca aaatttgctt gaaaatgctc cgcttttgat caataattta
    27361 tgcacctctt gccaaaaaga ctttgaaaca ctgcaacaaa ttttaaagga taatggagtt
    27421 aaatttgagt tagattcaaa acttgtgagg ggtttggatt attattctaa aacggctttt
    27481 gaatttataa gcgatgaaat aggagcaaag gctgctatcg caggtggagg acgctacgat
    27541 agacttatag agtatttagg tggaaaaagt ggctatggta taggttttgc catgggtata
    27601 gaaagaatta taactatttt agaacaaaaa gaagaaaaga ttcaaagaga aggaatttat
    27661 ctttgtgcta tggatgaaat ttatatccaa aaacttttgc atatcgctac aaatttaaga
    27721 aaagaatata aagtactttt aagctatgaa gcaagaaaac tagccaaaca tcttgaaaac
    27781 gcggataaaa ataatactga aatttttctt tgcatgggag aaaatgaagc acaaaatgaa
    27841 agtttgtttt ataaaaattt agcaaaaaaa gaagaaaaaa tgattaaaat ttcagactta
    27901 aagaaggttt tatgatggat tatggtattg atatttgggg aaatgaaaat ttcattatca
    27961 aaaatggtaa agtttgtatc aattacgaga aaaaacctgc tattattgat atagttaaag
    28021 aattaagaga tgatggatac aaggggcctt tacttttaag atttcctcat cttatccaaa
    28081 aacaaattga aaatatttac ggaaatttca ataaagcaag aaaggaattt ggctataaag
    28141 gaggatttaa cgctgtttat cctttaaagg tcaatcaata ccctggtttt gtaaaaaatc
    28201 ttgtaaaact tggaaaagac tataactatg gacttgaagc aggttctaag gcagagcttt
    28261 tactcgctat ggcttataat aacgaaggcg cacctattac cgtaaatggc tttaaagata
    28321 gagaacttat caacataggc tttatcgcag ctgaaatggg acataatatc actttaacca
    28381 tagaaggact taatgaactt gaagctatca tagacatagc taaagaacgc tttaaaccta
    28441 aaccaaatat aggcttacgt gtacgtttgc attctgctgg agttggaatt tgggcaaaaa
    28501 gcggtgggat taattctaaa tttggactta catccactga actcatagaa gcggtaaatt
    28561 tactcaaaga aaacaaactt ttagaacaat ttaccatgat tcactttcat ctaggctcac
    28621 aaattaccga aattcacccc ttgaaaaaag ccttaaatga agcaggaaat atctatacag
    28681 aacttagaaa aatgggagct aaaaatctaa aagctatcaa tcttggcggt ggtttagctg
    28741 tggaatactc acaatttaaa aatgaaaaaa gtagaaatta caccctaaga gaatacgcta
    28801 acgatgtagt ttttatccta aaaaacatag ccgaacaaaa aaaagattta gagcctgata
    28861 ttttcataga aagtgggcgt tttgtagcag ctaatcacgc tgttttaatc gctcctgtat
    28921 tagaactttt ttctcaagaa tacgcagaaa acaaactcat acttaaaaaa caaaatccaa
    28981 aacttatcga tgagctttat gatctttata aaagtataaa accttccaat gctttagaat
    29041 acttgcacga tagcatagat catttagaga gtattttaac tctttttgat ttgggctatg
    29101 tggatttaca agatcgttcc aatgctgaaa ttttaactca tttgattaca aaaaaagcca
    29161 tcttgctttt aggcgataag caaaatcctg cggatttact tgccatacaa gatgaagtgc
    29221 aagaaaggta tttggtaaat ttttcgctct ttcaaagcat gcctgatttt tggggtttag
    29281 aacagaattt ccccatcatg ccacttgatc gcttagatga agaaccgaca cgaagtgcaa
    29341 gtatttggga tataacctgc gatagcgatg gagaaatttc atactctaaa gataaacctt
    29401 tatttttgca cgatgtagat gtagaaaaag aaaattattt tctagggttt tttcttgtag
    29461 gtgcctatca agaagtactt ggaatgaaac acaatctttt tactcatcct actgaagcta
    29521 ttataagcat caatgaaaaa ggctatgaag tcgaggggat tatagaagcg caatccatac
    29581 ttgatacctt agaagattta gactatgata tacacgctat catggatata cttaatgaac
    29641 gcataagtaa ttctaagctt gtaaatgata agcaaaaaaa gcatatttta ggcgaacttt
    29701 atcttttctt aaatgataat ggttatttaa aaagcatagg agtttagatg aatttttggg
    29761 gtattataaa agaagatttt tctcagccaa aggcacaaga tccagctttt aattcttgta
    29821 tagaactttt ttttaattac cctggagtat gggctgtagt aaattaccgc tttgcacatt
    29881 ttttttacat aagaaatttt aaacgcattg ctagaatgat tagcggaatt tcacaattct
    29941 taactggggt agatttgcac cctggagcag aacttggaag gcgtattttt atagatcatg
    30001 ccaatggagt ggttataggt caaacagcaa ttatagaaga tgatgtttta atttatcaag
    30061 gcgttacttt aggtggaaca agccttgaaa aaggtactaa acgccatcca accataaaaa
    30121 aaggagtgat cataggctca ggcgcaaaag tgcttggcaa tatcaccata ggagaaaatg
    30181 ccaaaatagg ctcaaatgct gtagtggtta aagatgtagg tgcaaattta actgccgttg
    30241 gaattcctgc ttatattatc gaagagcgta aaaataaaaa cattagagcc atagatgcaa
    30301 attgcgatga caaactagaa aagttagaaa agaaaatttt agaacttgaa aatcttatat
    30361 taaaacaacc tgaatcacaa aaataataat tttt
//
LOCUS       DARGBD010000011        30270 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.011, whole genome shotgun sequence.
ACCESSION   DARGBD010000011 DARGBD010000000
VERSION     DARGBD010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30270
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.011"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            32..727
                     /locus_tag="SFZ04_000393"
     CDS             32..727
                     /locus_tag="SFZ04_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEG8064699.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            724..1977
                     /locus_tag="SFZ04_000394"
     CDS             724..1977
                     /locus_tag="SFZ04_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEG8064700.1"
                     /translation="MIIPEIVAPAGNFAKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHIFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGR
                     FFKCKGKIVLNTPYEILTPLGDVIQTCDNELGKIYQKEGKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            1978..2472
                     /gene="purE"
                     /locus_tag="SFZ04_000395"
     CDS             1978..2472
                     /gene="purE"
                     /locus_tag="SFZ04_000395"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEG8064701.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGVKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMPGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2482..3018
                     /locus_tag="SFZ04_000396"
     CDS             2482..3018
                     /locus_tag="SFZ04_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HEG8064702.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3030..3893
                     /gene="glyQ"
                     /locus_tag="SFZ04_000397"
     CDS             3030..3893
                     /gene="glyQ"
                     /locus_tag="SFZ04_000397"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEG8064703.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3880..4605
                     /locus_tag="SFZ04_000398"
     CDS             3880..4605
                     /locus_tag="SFZ04_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEG8064704.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMIYKNISLISMHTNYDL
                     SHLNTYFTEEILGFKISFKDEFLIYVENSMSFEALCDWVKKKLNLQILRVSDCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVSKNPFQYF"
     gene            4615..5331
                     /locus_tag="SFZ04_000399"
     CDS             4615..5331
                     /locus_tag="SFZ04_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEG8064705.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINKTLKDAELKIEKINA
                     DLEKIDEEIKDIENQKIQNNAHISEFSAKIKDLSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVSEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            5328..6485
                     /gene="waaA"
                     /locus_tag="SFZ04_000400"
     CDS             5328..6485
                     /gene="waaA"
                     /locus_tag="SFZ04_000400"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HEG8064706.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKISLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKALVLKFDSRITTITQTGFECAKEFCKKVNYLAFENFL
                     PFWFNPCKVLVIFEAEYWLMLVFMARIYKAKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSELDKVRLESLGAKNVKIFKNIKAILEIKNNKIYTKPKEKLIIFASTHK
                     DEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFSKK
                     ILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEAAYFDNVLISGKFIHNQKVLF
                     EEVENVYFCEKLKDLNDKIHYLNLKAKISKKENLDLIIQTIQKGIDARKSL"
     gene            6466..7218
                     /locus_tag="SFZ04_000401"
     CDS             6466..7218
                     /locus_tag="SFZ04_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8064707.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKAKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNTKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            7286..8623
                     /gene="ffh"
                     /locus_tag="SFZ04_000402"
     CDS             7286..8623
                     /gene="ffh"
                     /locus_tag="SFZ04_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEG8064708.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKINLENILSVNGKNQGFVFTSKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLSGMANVVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            8688..8915
                     /gene="rpsP"
                     /locus_tag="SFZ04_000403"
     CDS             8688..8915
                     /gene="rpsP"
                     /locus_tag="SFZ04_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEG8064709.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            8918..9160
                     /locus_tag="SFZ04_000404"
     CDS             8918..9160
                     /locus_tag="SFZ04_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEG8064710.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            9153..9692
                     /gene="rimM"
                     /locus_tag="SFZ04_000405"
     CDS             9153..9692
                     /gene="rimM"
                     /locus_tag="SFZ04_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HEG8064711.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            9689..10393
                     /gene="trmD"
                     /locus_tag="SFZ04_000406"
     CDS             9689..10393
                     /gene="trmD"
                     /locus_tag="SFZ04_000406"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEG8064712.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            10404..10760
                     /gene="rplS"
                     /locus_tag="SFZ04_000407"
     CDS             10404..10760
                     /gene="rplS"
                     /locus_tag="SFZ04_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEG8064713.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
     gene            10893..11306
                     /gene="uraH"
                     /locus_tag="SFZ04_000408"
     CDS             10893..11306
                     /gene="uraH"
                     /locus_tag="SFZ04_000408"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEG8064714.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
     gene            11330..12670
                     /locus_tag="SFZ04_000409"
     CDS             11330..12670
                     /locus_tag="SFZ04_000409"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEG8064715.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAI
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            12667..12996
                     /locus_tag="SFZ04_000410"
     CDS             12667..12996
                     /locus_tag="SFZ04_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEG8064716.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(13009..13215)
                     /locus_tag="SFZ04_000411"
                     /pseudo
     CDS             complement(13009..13215)
                     /locus_tag="SFZ04_000411"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Rdx family protein"
     gene            13444..17046
                     /gene="dnaE"
                     /locus_tag="SFZ04_000412"
     CDS             13444..17046
                     /gene="dnaE"
                     /locus_tag="SFZ04_000412"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEG8064717.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTGEYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGLEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            complement(17059..17691)
                     /locus_tag="SFZ04_000413"
     CDS             complement(17059..17691)
                     /locus_tag="SFZ04_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEG8064718.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKESIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(17727..18476)
                     /gene="flaC"
                     /locus_tag="SFZ04_000414"
     CDS             complement(17727..18476)
                     /gene="flaC"
                     /locus_tag="SFZ04_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HEG8064719.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATGGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            complement(18515..18985)
                     /locus_tag="SFZ04_000415"
     CDS             complement(18515..18985)
                     /locus_tag="SFZ04_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HEG8064720.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFHS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIKLQNLGENATKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            complement(18998..19813)
                     /locus_tag="SFZ04_000416"
     CDS             complement(18998..19813)
                     /locus_tag="SFZ04_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEG8064721.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIQI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFKIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQDYNRAFIAKLTNMRYDKK"
     gene            complement(19810..20997)
                     /locus_tag="SFZ04_000417"
     CDS             complement(19810..20997)
                     /locus_tag="SFZ04_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8064722.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLILSNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMEKLNDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYTFFYLSHPSISDRIK
                     ALS"
     gene            21125..21310
                     /locus_tag="SFZ04_000418"
     CDS             21125..21310
                     /locus_tag="SFZ04_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HEG8064723.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLIRANKF"
     gene            complement(21307..21849)
                     /gene="mog"
                     /locus_tag="SFZ04_000419"
     CDS             complement(21307..21849)
                     /gene="mog"
                     /locus_tag="SFZ04_000419"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HEG8064724.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(21870..22853)
                     /gene="corA"
                     /locus_tag="SFZ04_000420"
     CDS             complement(21870..22853)
                     /gene="corA"
                     /locus_tag="SFZ04_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEG8064725.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            22970..24016
                     /locus_tag="SFZ04_000421"
     CDS             22970..24016
                     /locus_tag="SFZ04_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEG8064726.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITLGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            24027..25352
                     /locus_tag="SFZ04_000422"
     CDS             24027..25352
                     /locus_tag="SFZ04_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HEG8064727.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYISKKDVFWVI
                     SDNGLGKKYNSYDSMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVIENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            25349..26158
                     /locus_tag="SFZ04_000423"
     CDS             25349..26158
                     /locus_tag="SFZ04_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEG8064728.1"
                     /translation="MMSKVILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSEIINNKLSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDILISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            26155..26994
                     /locus_tag="SFZ04_000424"
     CDS             26155..26994
                     /locus_tag="SFZ04_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8064729.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFVLAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            26995..27774
                     /locus_tag="SFZ04_000425"
     CDS             26995..27774
                     /locus_tag="SFZ04_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8064730.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            27778..28767
                     /locus_tag="SFZ04_000426"
     CDS             27778..28767
                     /locus_tag="SFZ04_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8064731.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            28764..29402
                     /locus_tag="SFZ04_000427"
     CDS             28764..29402
                     /locus_tag="SFZ04_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEG8064732.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(29426..30181)
                     /locus_tag="SFZ04_000428"
     CDS             complement(29426..30181)
                     /locus_tag="SFZ04_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8064733.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKDIIEIFNKGIDEAKTDGFYDTLIKKYELE"
BASE COUNT        10725 a         3809 c         5336 g        10400 t
ORIGIN      
        1 ttgaaaatct agatttaaaa aagggaaaaa aatgactcaa gaagagcttg atgctttgat
       61 gaatggtgat gttgatcttg attcagagac agaagcagag gtaaaaaccg aagaatcgaa
      121 taccgaagaa gatgctttga tgttagaaga tgtcaaaata gctgattaca aacctaatcc
      181 tagtgtagta tggccaccac ccccaccaaa tcaggagcat aaagttgtac atcagttaga
      241 tgatgttaca aaagatagcg agcttaaagc aacggaaatg atggataagc ttgaaagtat
      301 taataatttt tttgcggatt ctgaaagttt actcaaagaa ataaataaag caatagaaaa
      361 aaatattgat attttttcta aacttaatga aaaatttcct aatgtggaaa gtttcagtga
      421 agctttagaa ttaaacaatc aagctaaaaa aagttctaag gagattgtcg gaaatcttca
      481 aagcggacaa gatgaagtga tgatggcaat ggatgcaatg cagtatcaag atatacatcg
      541 tcaaaaaatc gaacgtgtta ttaatgtaat gcgtgcttta agccgttata tgagttcttt
      601 atttgaaggt aaaattgatg ataaaaaacg tgtaagttct gcagtgcata ttgaaggtga
      661 tagtactgct gatgttgtaa gtaatgatga tatagaagct ttgattgcaa gtttagggca
      721 aaaatgatca ttcctgaaat agtagctcct gcaggaaatt tcgcaaaatt aaaaattgct
      781 ttagcttatg gcgcagatgc ggtttatgcg ggtgtgaata atttttcttt aagatcacgc
      841 actgcaagag aatttaatta tgaaagtttt gaagaagcta tcaaatatac tcatgagcgt
      901 ggtaagaaaa tttatgttac tttaaatggt tttcatttga gttctcaaat tgaaggttta
      961 aaaagacata ttttaaaatt gcgtgagatg aaacctgatg cttttattgt agcttctgtt
     1021 ggagctatgc gtcttgttaa agaacttgca cctgaaattt ctttacatgt ttctactcag
     1081 gcaaatattt taaattattt agatgctcaa gtttataaag atatgggtgc taaaagggtt
     1141 gtaattgcca gagaattagg gcttaaagac gctaaagctt taaaggaaaa ttgcgatatt
     1201 gaacttgaag cttttgtgca tggttctatg tgttttgctt attctgggcg ttgtttaata
     1261 agctctgtgc aaagtggaag aatgagcaat cgtggatctt gtgcaaatga ttgtagattt
     1321 aattatgagc tttatgctaa aaatccagaa aatggcactt tatttcgttt agaagaagat
     1381 gaaaatggta ctcatatttt taattctaaa gatttaaatc tttgttctta tatagaaaaa
     1441 atcatgcaag aaaattgtat cagtgctttt aaaatagaag ggcgtactaa aagcgaatat
     1501 tatgttgcgc ttacaacaag gacttataaa atggccatac aagatgcttt agagggtaaa
     1561 tttgagtcaa gtaagtatga aaaagagatt gctacactta aaaatcgtgg ttttacagat
     1621 ggctatcttg tttcgcgtcc tttagaaaaa accgacacac aaaatcataa tacaagcata
     1681 gaagaaggtt ctcatcaagt gcatgctata agcgaagatg gaagattttt taaatgtaaa
     1741 gggaaaatcg ttttaaacac gccttatgaa attttaaccc ctttaggcga tgtgattcaa
     1801 acttgcgata atgaactagg taaaatttat caaaaagagg gtaaatattt tatagagttt
     1861 aaaaaactta ttgctaaaaa caataaagaa tttagcgaaa ttcatagcgg taatgaacat
     1921 gaaatccaat taccaaataa aatcagtgca ttaagttttt taagaaagga aatatagatg
     1981 aattttgttt ctattttaat gggaagcaag agtgattatg agactatgaa agaggctgct
     2041 aaaactttag aaagttttgg tgtaaagtat gaacttatca tctcatcagc tcatcgtagt
     2101 ccaaaaagaa caaaagagta tattgcaaat gctgaagaaa aaggtgtgaa ggtttttata
     2161 gcagcagctg gaatggcagc gcatttagct ggagctgttg cagcttatac aacaaaacct
     2221 gttttaggag tgcctatgcc aggaagtaat cttgcaagta tggattcttt gttttctacg
     2281 gtgcaaatgc ctagtggaat tcctgtagga actttagcta ttggtaaggc tggagcaatc
     2341 aatgctgctt atttggctat gcaaatttta gctatttatg atgttgattt agcacaaaag
     2401 cttaaagaag atcgtcttga aaaagaaaaa aaacttgtat ctgattcaaa agaagtagaa
     2461 gttttattat aagggataaa aatgcaaacc tatcttgaac ttgaagaatt ttgtaaactt
     2521 gtgcatttaa atgaagatgt ggttaagggt atgatggcca atggggcttt aaattttaaa
     2581 gaagaagagg gtaaaattta catcgaagct catcaaggta cttttagtgt agtgcctagt
     2641 tctgcaaaat ctcaaactgc aatggtaaat tcaatgactt tagcaggaga aagttttgtt
     2701 gaaaaaacaa taggaactat tttaaattta catgaaaaag ttttagatgc taaagatgaa
     2761 acacttgaag cattaaaaaa tgaaaataaa tttttaaaag atgcccttta ttctatgcaa
     2821 gagctttatg atgaagatag aaaaactata gaaaccttaa acaatgagtt aaaacatgcg
     2881 cgtgaagaga tagaatttct caagcgtaaa tataaattaa tgtggagtaa aactgcagaa
     2941 atttttggag ctaagacaga gcctgatttg gaaatgaata aaaatttaga aaaacctatt
     3001 gaaaatatgg aacaataaag agagatacaa tgactttttc acaaatgata cttaatttac
     3061 aaaattattg gcaagagcaa ggttgtgcga ttatgcaacc ttatgatatg ccagcaggtg
     3121 caggaacctt tcatccagca acttttttaa gaagtttagg aaaaaaacct tgggcagctg
     3181 cttatgtggc tccaagtaga aggcctactg atggacgtta tggtgaaaat cctaatcgct
     3241 taggtgctta ttatcaattt caagttttga ttaaacctag tcctgataat atccaagaat
     3301 tatatcttaa aagtcttgaa aatttgggtt ttgatttaaa aagtcatgat attcgttttg
     3361 ttgaagataa ttgggagagt ccaagtttgg gtgcttgggg tttaggctgg gaagtatggc
     3421 ttgatggtat ggaagttact caatttactt attttcagca agttggcggt atagcagtag
     3481 atttagtaag tgctgaaatt acctatggtc ttgaaagaat agccatgtat cttcaaaatg
     3541 ttgataatgt ttatgatata gtttggagtg aatttaatgg agaaaaaatt aaatacgcag
     3601 atgtgcataa gcaaagtgaa tatgaattta gtaaatacaa ttttgaagta agtgatgtta
     3661 aaatcttaaa tgagcagttt gaaaattctt acaaagaatg taaaaatatt ttagaacaag
     3721 gactagcttt acctgcttat gattattgta tgcttgctgc acatactttt aatcttttag
     3781 atgcaagagg agcaatttct gtagcacaaa gacaagatta tatgttaaaa attcgtgaac
     3841 tttcaaaaaa ttgtgctgaa atttataaga aaaatttaaa tgaagctgag tgaaatttat
     3901 aattttttag atcaattaag tccctttgat atccaagaat catgggataa tagtggaatt
     3961 ttgcttggag atagggatag tgaaatttca actgtttatt taagcttaga tattgatgaa
     4021 aatatcatta aagaagcgag tgaaaattct ttaattatca cacaccatcc tttgatattt
     4081 aaaggtttaa aagatttata tgacaagact tatcctaggg cttttatcaa agaaatgatt
     4141 tataaaaata tttctttaat cagtatgcat acaaattacg atttaagtca tttaaatact
     4201 tattttacgg aagaaatttt aggttttaaa atttctttta aagatgaatt tttaatttat
     4261 gtggaaaatt ctatgtcttt tgaagctttg tgtgactggg tgaaaaaaaa gttaaatttg
     4321 caaattttac gtgtaagtga ttgtggcaaa aaagacatta agcgcattgc tatatgtact
     4381 ggaagtggcg gggatttaat ttctaaagta gatgcggatt gttttttaag tggagatttt
     4441 aaatatcatc aagctttaga ggcgcttagt aatcaaatca gtcttattga tttgggtcat
     4501 tttgaaagtg agagatattt ttctcaatgt ctagcaaaag acttgaaaaa tttgccgcta
     4561 caagttataa taacagtttc aaaaaatcca tttcaatatt tttaaggaaa ataaatgaat
     4621 aaatatctcg aacaattagt gcttttatca aaaatagatc aagaaattga tagttatgaa
     4681 ccaaaaatag acagtattaa taagacttta aaagatgctg agttaaaaat agaaaaaatc
     4741 aacgcagatt tagaaaaaat cgatgaagaa atcaaagata tagaaaatca aaaaatacaa
     4801 aataatgctc atatttccga gttttcagca aaaattaaag atctttctaa aaaaagtggt
     4861 gcggtaaaaa cagaaaaaga agctaatgct ttaaaaattg aagaagatat tgcaaaagaa
     4921 caattagacg ctgcaaatga tgagattgta agactagata aaattttaga gaataaagaa
     4981 acttataaaa aagaacttga agaagaaaaa atcaaacaag agcaaaatat taacgagatt
     5041 agagtaagca ttaaatctga aatggaagtt cttgaaaaag atagaatgag tgtttatgat
     5101 aaaaaaacta aacttgtgag tgagatgaat caaaaagttt taagttttta tgagaaaatt
     5161 cgcaaatggg cgaagaatac tgctgtagtt cctgttaaaa aacaagcatg ctatggatgt
     5221 tttatgaaaa tttacgataa gacttatctg tccgttgtaa aaggtgaaga gattgtaact
     5281 tgtcctcatt gcggaagaat tctttataaa gagcaagaag aacaaaattg atcttttttt
     5341 attatttttt aacttggacg gcatttttat tttgtgccgt ctttattctt ttgctttctt
     5401 ttttaaaatc caaatacaaa attagtttaa aatctcgatt ttttctttat aaaaatttac
     5461 atcaagaaaa agctgatgta cattttcatg cttgttctta cggggaggta agaagtatta
     5521 aagctttggt tttgaaattt gattcaagaa taactactat tactcaaaca ggttttgaat
     5581 gtgcaaaaga attttgtaaa aaggtaaatt atcttgcttt tgaaaatttt ttgccttttt
     5641 ggtttaatcc ttgtaaggtt ttggtaattt ttgaagcaga atattggctt atgcttgttt
     5701 ttatggcacg tatttataag gctaagatta ttttgcttaa tgcgagaata tctgataaat
     5761 cttatcattc ttatcaaaga ttttcttttt tttataaaaa aattttttct tatattgatg
     5821 aagtttttgc tcaaagtgaa ttagataaag taagacttga aagtttggga gctaaaaatg
     5881 ttaaaatttt taaaaatatt aaggcaattt tagaaattaa aaataataaa atttatacca
     5941 aacctaagga aaaacttatc atttttgcca gtactcataa ggatgaagaa gagcttttgc
     6001 ttgatcattt taaactagaa gaaaatgaaa aactcattat cgccccacga caccctgaac
     6061 gttttaaaga agttgaaaat ttgcttttaa acaaaggttt agaatttgaa aaatttagtt
     6121 ctttaaaaga tgaaaataag aaattttcta aaaaaatttt gcttttagat gctttagggg
     6181 agcttgtaaa tttttatgca atttctgatg ttgttgtgct tggaggttct ttcatagaag
     6241 gcataggagg acacaatcct atagaagcgg catattttga taatgtatta atcagcggga
     6301 aatttattca caatcaaaag gttttgtttg aagaagtgga aaatgtatat ttttgtgaaa
     6361 aattaaaaga tttaaatgat aaaattcatt atttaaattt aaaagctaaa atttccaaaa
     6421 aagaaaattt agatcttatc atacaaacta tacaaaaggg aattgatgca agaaaaagct
     6481 tataaactct tagctttgca agaaaaaatt tcaaatcgtg aagctaaaga tttgattgat
     6541 aagggttgtg ttttttcaca tggaaaaaaa gttgtggttg ctagagcttt gatgagcgat
     6601 aaggcaagat ttaatgtgat aaaagctaaa aatcctcaaa ttatttttga agatgataag
     6661 attattgcta ttaataaacc ttatgcttat gtgagtgaag atttagagaa aaaatttaat
     6721 accaagcttt taaatcgttt agacaaagaa acaagtggtg tgattttgct ttgtaaagat
     6781 gaagatttta gaaagctttg tatagaagaa tttaaaaaac acagggttta taaaagttat
     6841 attgcagttt tagatggggt tttggctgaa gaggttgaag tgaatgaacc tatttttact
     6901 ataaaagtaa aaggcggggc gttaagtaaa gtttcaaaag atggtttaag tgctttaagt
     6961 atcattactc ctatcatgat gcagtcaaaa aaaaccttag caaaaatagt tattcaaaca
     7021 ggtagaactc atcaaatcag agtgcatgct aaatttataa aacatggcgt tgtaggtgat
     7081 gaaaaatatg ctaaaatttc aagcgataga atgtatttac atagttatga aattaaaatt
     7141 tttgattatt attttaaggc tgagctagat aatagttttg caaaagttgg ctttgagata
     7201 aaaaatttag atttttaaag ccatttaaga aaaaattttg tataatgcaa ggtttaattt
     7261 aaaaatttta tagaaaggtg ataaagtgtt tgagttagtc agcgaatctt ttaaatcagc
     7321 gattaataaa ttacgttttg ttgatgatga aaaagcactt aagaacgctt tagaaacctt
     7381 aaaaaaagct cttttaaaag cagatgttca tcataaggta actaaagagc ttttgacttt
     7441 aatagaagaa gatgtaaaac aaaatggcat aggtcaaaaa caatttttaa atgccattaa
     7501 aataaattta gaaaatattt taagtgtcaa tggtaagaat caaggttttg tttttacttc
     7561 taaaccccca acagtagttc taatggcagg tttgcaagga ggcggtaaga ctacaagcac
     7621 tatcaaactc gcaaattatt taaaattacg caataaaaaa gttttagttg cagcttgtga
     7681 tttgcagcgt ttagcagcag tggagcaact aagacaactt tgtgaagcta atgaaattga
     7741 acttttcttc atagaaaatg aaaaagatcc tattagggtt gctaaagagg ctttaaaaaa
     7801 ggctgaaagt tctatggtgg atgttttgct tgtggatact gctggacgtt tggctataga
     7861 tgaagctttg atggatgagt taagagcagt taaggatgtc ttaaatcctg atgagatttt
     7921 ttatgttgct gatgcaatga gtggtcaaga tggggttaag accgctgcta gttttaatga
     7981 agttttaggt atcagtgggg taattttatc aaaatttgat gcagatacta aaggtggagt
     8041 agccttaggt atagcaaaac aaatcggtat tcctttaaga tttattggtg tgggtgaaaa
     8101 agtagcagat ttagaagttt ttataccaga tcgtatagta agtcgtatta tgggtgaggg
     8161 tgatttggca actttagctg aaaaaactgc tgcgattatt gatgaaaaag aggctaaaaa
     8221 actcaatcaa aaaattaaaa aaggtgaatt taattttaat gattttctta atcaaatgga
     8281 aagtattaaa aaattaggaa gtatgaagtc tttaatcggt atgataccag gacttagcgg
     8341 aatggcaaat gtggtaaaag atatagattt ggataattct aaagaaatca tacgcattaa
     8401 agcaatgatt tcttcaatga ctccaaaaga aagagaaaat cctgatttat taaataatgc
     8461 tagaaagcgt cgtatagcag agggagcagg tctttctcag gtagaagtca atcgtttttt
     8521 aaaacaattt agcaatgcag caaaacttgc aaaaagattt tcaggtaaaa aaggaatgga
     8581 aagtttaaca cagatgatga gtcaagctag aaggcaattt taaattttat ttataaatac
     8641 tttttatagt atctataaat aaaattttta atttttaagg agtataaatg acagttatta
     8701 gacttacaag aatgggtaga accaaaagac cattttatcg tattgtagtt acagacagta
     8761 gaaaacgtcg tgatggtggt tggatagaaa gtattgggta ttataatcct atggtagaac
     8821 ctgaggtaat taaagttgat gcagagcgtt tagcttattg gaaaagtgtt ggtgcaaaac
     8881 ttagcgataa agttgcttct atcactagca aataatcatg gtagagaatt ttcttagaga
     8941 atacgcaaaa ttaattgcag attatcctga acagattgat actcaaaaaa ttgaattaag
     9001 tgaaaatttt tttgagattg ttctttttgc acataaggtt gatacaggta agcttatagg
     9061 taaaaatgga aaaatgatca atgctataaa aaccgtaatc tctgcttata agagcaagga
     9121 tgcaagttct tatagagtaa cggtaaaagc acttgagtga aaaagatttt gttcaagttg
     9181 caaaacttgg taaaactgtg ggtcttaagg gttatgtaaa attgcataac ctgagcgact
     9241 tttcttctca atttaaaaaa gatgctactt tttttataaa aaacaccaaa gaaatgttaa
     9301 agattaagca ttataatgca aacaattcta ctgttttatt tgaaaattat gaagatatag
     9361 aaaaggccaa agaattaact aatcttattc tttttcagag tatcgagaaa agcagacaaa
     9421 cttgtaaatt aaaaaaagat gagttttttt attttgatat tttagagtgt gaagtttttg
     9481 aagaagataa aagattaggt aaagtggttg atatcttgga aactggagct tcttatttat
     9541 ttgaaattca aagtgatgaa aaatgggttg aaaaaaaata tcctaaaata ttttttattc
     9601 catatttgga taaatttgtt aaaaatatag atatagaaaa acgacagatt ttttgcacgc
     9661 aagatgcttt tttaatttta gaaaattcat gaaatttagt ttcgtttctt tgttccctaa
     9721 tcttatggaa ttttactttc aagattctat acttgcaaga gcaaaagaaa aaaaactttt
     9781 caaacttaat ttttataatc caagagattt ttctaaaaat tcttatcata aagtcgatga
     9841 ttataaaata ggtggtggag ctggactttt gatgcaagct gaacctatgt atgaggtgct
     9901 aagaagtatt caagaaaaaa aagaaaatcc ctattttatt tttttaaatc caagtggtaa
     9961 aacctttaat caaaaagacg ccaaacgctt aagtaaaaaa gaacatatag tttttgtatg
    10021 tgggcgctat gaaggtatag atgaaagagt gcttgaaatt tttgcgaatg aagtttttag
    10081 tataggggat tttattttaa ctggaggaga attacctgcg cttgtaatgt gtgatgcaat
    10141 tttaagaaat gttaacgggg ttttaggaaa tatggaaagt ttggaagaag aaagctttga
    10201 aaataattta ctcgaagcgc ctgctttttc aaaacctttt atttttgaga aaaaaaataa
    10261 aaaattttat actccttcag agtttttaaa gggtaatcac gctagaattg caagtttaaa
    10321 aactactttg gcgtcttgca aaacgaaatt ttttcgtcca gatttatttt tagagcatga
    10381 acgcaaaaaa taagggattt tttatgaaaa ataaatatat agaacaattt gaagcaaaac
    10441 aaattgaagg taaaaatgtt ccagattttc gtgctggtga tactttaaag cttgcaattc
    10501 gcatcaaaga aggagataaa acaagaatcc aaaattttga gggtatttgt attgctagaa
    10561 gaggtaatgg cgtaagtgaa acttttatcg tgcgtaaaat tggcgctaat aatgttggcg
    10621 ttgagagaat ttttcctatt tatagtgaaa gtttagaaag tattactgtt ttgcgtcgtg
    10681 gtcgtgtacg ccgtgcaaga ttattctact taagagatag acgcggtaaa gcagcgcgta
    10741 ttaaagagct taaaaaataa tttataatta tttttattat aagtctaaca attaaataat
    10801 tataattaat ttataattat tatttatttg attttaatta ttaataatac tcttgtataa
    10861 tattccttgt aaatattata caaggagaga aaatgttttc tattaaaaaa actttattaa
    10921 tactagcaag cgtgccaatg tttttgagtg ctactgaata tcaattaagt actcatgtct
    10981 tggatattac ttctggacaa cctgctccta aagtaaaagt tgagctttat aagttggaag
    11041 caaatcaaca gtggaaaaaa gtaagtgaag aatttaccga agaaaatggt agaataggag
    11101 atttattacc atatgaaaaa gctgaaaata gggcttttgg aatttataag cttaaatttt
    11161 ttacaaaaga ctattacaca tcacacaaaa taaatacttt ttatcctttt gtagaggtaa
    11221 gttttgagct ttctaaagat cagaaacatt atcatgttcc aataaccctt tctccttttg
    11281 gttattcaac ttatagagga agctgataaa taaaacgaaa gaaaaaacca tgtgggctaa
    11341 gaattcttgg aaaaactatc ctataaaaca gcaacctatc tatccagatc aagaggaaat
    11401 gaatagagtt ttagcaagac ttgagaaact tcctcctttg gtttttgctg gagaagtgag
    11461 aaatcttcaa aagtctttag caagagtttg taaaaaagaa gcttttttac ttcaaggtgg
    11521 agattgcgct gaaagttttg aaaattttgg cgctgtaaat atccgtgata tgtttaaaat
    11581 tttacttcaa atggctatag tacttacatt tgctggtgga tgtcctgtta taaaaattgg
    11641 tcgtattgca gggcagtttg ccaagccaag aagtagtgat tttgaagagt tagatggtat
    11701 aagtcttcct agttatcgtg gtgatattat taatggtttt gaatttagtg aacaagcacg
    11761 cattcctgat ccacatagaa tgcttgaagc ttattatcaa agcgcaataa cgctaaattt
    11821 gttgcgtgga tttgctaagg gtggtttagc agatttacat gaagtacatc gttggaattt
    11881 gggcttttta aaaaagagtg aactccataa gcaatatact gatattagtg aaaaaatttc
    11941 acaagcttta gcttttatgg aagcttgtgg aattaataca agtaatactc caagtctaag
    12001 agaagttagt gtttatactt cacatgaagc tttacttttg ccttatgaag aagctttaac
    12061 tagagtggat agtttaagtg gagaaattta cgattgttca gctcacatgc tttggatagg
    12121 tgaaagaaca agggcgcttg atgaagctca tgtgcatttt ttaagtggag taaaaaatcc
    12181 tttaggggtt aaaataggac ctagtgcaag tgctgatgat atcatagctt tagcaaatgt
    12241 tttaaatcca aataatgaag aaggaagatt aaatattatt atccgcatgg gtgcagataa
    12301 aattatcaat aatttgccaa aaattttctc taaacttaaa agtgaaggtt taaatttagt
    12361 atatagcata gatcctatgc atggaaatac ggtaaaagca ggcaatttta aaacacgtga
    12421 gtttgataaa attatgcaag aagtgagatc tttttttgag attgcaataa gcgaaggggt
    12481 ttatccaggt ggagtgcatc ttgaaatgac tgggaaagat gtaacagaat gcacaggtgg
    12541 tgcaagcaat gttactgctc aaagcttgga agatcgttat gagactcaat gcgatccaag
    12601 acttaatgcg gatcaagcat tagaacttgc ttttttaatc gcagatttgg taaaaaaggc
    12661 tagaaaatga aactttatgg tattaaaaat tgcaattctg taaagaaagc tatggatgct
    12721 ttaacacaaa aaggtattgt gtttgatttt atggatatta aaaagattaa tcaagatatt
    12781 ttatacacat ggttaaaaca aaaatctttt gaagaactta tcaatactgc tggattaact
    12841 tctaaaaaac ttggcttaaa caaagaaaaa gttaaaaatt taaatgaaaa agaacttgaa
    12901 aaaattgtat tggaaaatcc aagttgtatt aagcgtccta ttatcgagta tgagcaaaac
    12961 atatatattg gtaaggaata tgagaaaatg ttatgataga gtgtttgatt acactctatt
    13021 ttttattaat tgattaattt cattttgata tggaaatctt tcactttcgc aattaataag
    13081 ttgtgcttta gagaagataa cttttccgtc tacttcaacg ataaaatcac ctctgccgcc
    13141 aatttcaaat tctacttcaa catctttgaa atcgctttgt agttcttctg caacccttgc
    13201 agcttgtggg cgataatttc aaagattgca ataagcaatt tttactttca tcatttcatc
    13261 ctttgagaag ttctttttat taagattaaa atcttagatt ttattatagt ttattttggc
    13321 tgaatttttg cctttttgta aaatttaagt tgaaatttag ggtcaatttc tttcaaattc
    13381 agcgagaaaa atttataatt tttatcaaaa ttataataag ccttaaaaaa ctaaaggaag
    13441 aaaatgagtc aatttacaca cttgcattta catacagaat attctttgct tgatggagcc
    13501 aataagctta aagaattagc tttgacttta aaagagcagg gtgctacaag tgtggctatg
    13561 acagatcatg gaaatatgtt tggggcaatt gatttctatc aaacaatgaa agcacaaggt
    13621 ttaaaaccta tcattggtat ggaagcgtat ttacataatc acgatgaatt agatgataaa
    13681 agttctcgtc agcgttttca cctttgtttg tatgcaaaaa atgagatcgg atatcaaaat
    13741 ttaatgtatt taagttctca aagttatatt aaaggtttgt attattatcc gcgtatcaat
    13801 aaaaagcttt tggaagatca tagcgaaggt cttatttgct cttctgcttg cttgcaaggt
    13861 gaagtaaatt ggcacttaaa tacttatagt gaaagaaatg tgcgttttgg tgcaaaaggc
    13921 tatgaagcag caaaagaagc ggcattatgg tataaaaaag tttttaaaga tgatttttat
    13981 tttgaaatca tgcgtcatgg tataggcgat caaagaatga tagatgatga tattatcaga
    14041 ctttctaaag aattaaatat aaaaatcatt gctacaaatg atacgcatta tacttttaaa
    14101 gaaagagcgg ctgcccatga ggtttttatg tgtatagcca tgggaaaaaa acttaacgat
    14161 cctgatagaa tgcgtcatag tgtgcatgaa ttttatgtta aaagccctga gcaaatgagt
    14221 gagctttttg cagatattcc agaagctata gaaaatacac aagaaatcgc gcaaaaatgt
    14281 aatttagagc ttaatcttgg caatcccact ccaccgaatt ttaaatttac aggagaatat
    14341 gctaaagatc ataatattat cttacctgaa gaaacaaaag aatttagctt tgataatgat
    14401 gacatagttt ttgaagaact ttgtaaaaag ggacttgaag agagattaaa atttatcgat
    14461 gaaagcaagc atgaagaata caaacaaaga cttgaagtag aaattaacat cattaaaaat
    14521 atgaaatttt caggttatat gcttattgtt catgatttta ttaaagtggc taaagataaa
    14581 ggtattccag taggccctgg aagaggatca gctgcaggaa gtttggtttc ttattgttta
    14641 aggattacgg atttagatcc tattccttat agtctacttt ttgagcgttt tttaaatcct
    14701 gagcgtgtga gtatgcctga tattgatgtg gatttttgtc aagacagacg tgctgaagtg
    14761 attgattatg tgattgataa atatggagcg gataaggttg cacaggtgat tacctttggt
    14821 aaacttttgg ctaaaggggt gattcgtgat gtggctagag tttgtgatat gagtattcaa
    14881 gatgctgatg agcttgctaa acttgtgcct gaagagctta aaatcactct tgatgctgct
    14941 tatgaaaaag aacctaaaat caaagaattt atcgatcgtc atcctaaagg tcttgaagtt
    15001 tgggagtatg caagagcttt agaaggatta aatcgcaatg cgggtatgca tgcagcaggt
    15061 gttgtaattt ctaatgaaag tttatggaag aaaactccgc tttttagaca aagtaaaaat
    15121 gatgaaagac atttggtaac gcagtattct aaagatcatt tagaagatgt ggatttgata
    15181 aaatttgact ttttaggtct taaaacctta acagtaatca ataatgcgat caagcttatt
    15241 aaaaagcgtt acaataaaga cattatttgg gaaactatag atgtaaatga tagcaaagtt
    15301 tataaaacca tacaaagtgg aaatactttg ggaatttttc aaatcgaatc aggcggtatg
    15361 caaagtttaa atgcacgctt aaaaccagag cgttttgaag atatcattgc ggttcttgcg
    15421 ctttatcgtc caggccctat ggaatcagga atgcttgatg attttatcga cagaaagcat
    15481 ggtttaaaaa gtatagaata tccttttgac agtttagaaa aggttttaga acctacttat
    15541 ggggttattg tttatcaaga acaggttatg caaattgttc aaattatagg tggcttttct
    15601 ttaggaggtg ctgatgtagt gcgtcgtgct atgggtaaaa aagatcctga gaagatgaaa
    15661 aagcttaaaa ctgattttgc agatggagca gaaaaacaag gatatgatag agcaaaagct
    15721 gaggatttat gggagcttat cgtaaaattt gcaggatatg gttttaataa atctcactct
    15781 gcggcttatg cgttgattac ttttcaaaca gcttatttaa aaacttatta tcctagtgaa
    15841 tttatggcag cacttttaac aagcgaagaa aacaatgtgg ataaaattgc tgtttatatt
    15901 gatgagatga aaaaaatgaa tattaaactt ttacctccat cgattaacaa agcgatccgt
    15961 gaatttagtg ctttagagca agatggcaag gatgctatta tatacggact tggagctata
    16021 aaaagtgtgg gtattcctgc agttgaaaat ttacttgaag caagacaaga tggagaattt
    16081 aaggatatta atgatttctt aggtaagata gatcctacca aaataaaccg tagaacatta
    16141 gaaagtctta ttaaggcagg ggcttttgat gagtttggtt ttactagaaa agctttgttt
    16201 gataatatgg aaaatcttag cgaagcatcg cgtaaaatgg ctgaagtaag aaaaaatgct
    16261 gcaagttctc tttttggtga agaggaatta acttcaggtg ttcaagtaaa ttttactccc
    16321 aaaaatgaag aatttgaagt gatggaaaaa ttaggatatg aaaaagaaat tttaggaatt
    16381 tatgtttcag gccatccttt agatcgattt tatgaacaaa ttaatgccat agattatgtt
    16441 aaaagtttag attttgaaag tttaaaaaac aatggagaaa ttttaagtat aggtaaaatt
    16501 gaagatttca aatccatgat gagtaaaaat aataagcgtt atggtagaat tgaaattttg
    16561 gattattatt cttcgtttga tgctactgta tttgaaagca atgtggaaga aatagaaaac
    16621 atcatcaaag atgaaaattt aaaaaataat gcctatggtt ttgtattggg atttaaagct
    16681 gagggagggg agaagcctag ctttttttta aaagcaatta aagatttgca aagtcttgaa
    16741 gatggcgaga ttaaagctat aaaaaaattt ggagcaaaaa aagattttaa aaataaagaa
    16801 gaaaatcatt ttaccgcaga acctaaggaa tttgaaaaaa atatcataga gctagatttg
    16861 acaagattga atagagaatt aatctatgaa attcatgaaa ttgctagaaa tgcacataat
    16921 cctaatgaaa aaaataataa aaaacttgtt ttaaaagtta ttagtgcggg gtcttgcttg
    16981 ctttatcata cagattttat tatctctgat agtatagtag aggaaatttc taataaatat
    17041 gcttaagtaa gattgttctt acttaagatt tttaaataaa atgcttccga gtcttaccaa
    17101 gttggatccg cattttatag caatttcaaa atcattactc atccccatag agcaaatctt
    17161 agccccatgt ttttgaagaa tttcataaat tttaaatgta gtttcaaagc tttttataat
    17221 actttcttta tcttggctgt gtgagcctat actcattacg ccacaaagat ttagattaga
    17281 gcactcttct tgtatttgta aatattcttc tacagcttga tttggatcta gaccgctttt
    17341 gctattttca tttgcactat tgatttctaa taaagtattt aatttataat caagtctttt
    17401 gtccatagct ttagctattt taataccatt gcaagagtgc cataatatag gtttttgttt
    17461 gattaagaga ttgattttgt tgctttgtag cgttcctata aaatgccact ttatgtctag
    17521 ttttttttca tcaagatttt cttttttttg tgctagagct tggacttgat tttctccaaa
    17581 ttctactata ccttgatcaa aaagcttttc aattatactt gcatcgacat acttgcttgc
    17641 ggctacaaga cgaacgtttt tggttttttc taaaatttgc tctaaagtca ttttgataaa
    17701 gaaataagcc ctatttaggg cttatattat tgtaataaat tagcaatttt gctttgaagc
    17761 tgcatgttgg attgcgcagc aacaaaagca gcagcatttt cttttagata attggcatta
    17821 aaatcattaa cattttttgc catatcatta tttagtaaat tattttcagc tgcttttgag
    17881 ttgatgctat tttgaacact tgcattaata tttgatgtaa tggcattgat acctgagcct
    17941 atttcacttc ttaaacttcc aagttgatcc ataaaatttg taatactatc ttgattatct
    18001 atgcttaatc cacctgttgc taatggattt aaatttgtag tttcagttcc gctacctact
    18061 acaaaattca tagtttgaaa gacatttttt ccattataag ttgcattatt aaaagaatca
    18121 ttgatggatt cttgtatgcg tgttgcttct gttcttagca ttcctttttg agaatcatta
    18181 agtgcagcat tgttcatttt tactgaaagt tcattaagtc tatctgcgct ttgagagata
    18241 ttggtaaggc tagcatctgc aatttgtaaa acccctatag catcataagc atttgcgaca
    18301 ccttgatcta tagtgcttga ttgagatctt aaagaatcag caatagctaa attagcacta
    18361 tcaactccac ttattgcgcg aacagctgca atattttcta aagctttatc gctagctttt
    18421 tgtgcattat ttaaataata attttgttgc atcatagttg catcagagat catcatggcc
    18481 tactccttct cttttggatt tatttaatat tttatcattt ttttgctatt ttaaagctta
    18541 agaaatataa aaaaacttgc attattaaga tgattttaat caccacttca cttgcattat
    18601 ggatactgat aaattcttga gtttttgtag cgttttcgcc taagttttgg agtttaatta
    18661 tggtattagt aaaataaaaa acaaatatta agcttaaaat caaaataagc aaactcagca
    18721 taaattttga aaattttatt tgaaatttca tttcatcttt tataagagaa taaatttcat
    18781 ataaaaaatt aaccactgaa acaaaaatca gcaaatatcc cattttaata aaaatttgcg
    18841 tcatcattaa gccactgtga aaatggctca acactccttc tcctataaga ttttgaggaa
    18901 aaaaaattgt tggtgcaaca actattccta gtatgagttc aacccctatg atggaggcaa
    18961 gtaaaaataa attaacagct ttcaagagtt tctcctttta ttttttatca taacgcatat
    19021 ttgttaattt agctataaaa gcacgattat aatcttgttc atctttgaag aaatcaacaa
    19081 tgaaattatt ttgatataaa attttttcca aaatttcttt ttgatcatag ccaaattcgc
    19141 aagctaaaaa tttaactttt ttatcaaggg aaaaatgtat gatttcttct agaatttcat
    19201 atcctttttc tccgccaaat aaagcctctt tgggttcttt ttgcacccaa atatctatag
    19261 gatatgaatt tttaatatag ggcggatttg aaaaaataaa atcataattt tctttaattt
    19321 gcttaaaatt acaaagttta aagtcaatca agtgatcgac tttgtgtaat ttggcattct
    19381 ctaaagctaa ttctaaggct ttgggattga tatcgcaggc tgtgattttt aacccaagtt
    19441 ctttggctaa aacaatgctt aaaattccgc ttccaaatcc tatttctaaa atcccattaa
    19501 aagtattttt tttgcataaa tttaaaattt gaaaaagtaa aatttcacta tcgtagcgag
    19561 ggattagaac accttttttt atcttaaatt ctaatcccca aaaatctact ttttcaaata
    19621 tatattcaaa aggttctcca gatttaaaac gctttataag ctcaaaataa ggttcatgat
    19681 ctatttgtat atcttggttt aaaaataacc aagctttatc tttttttaga tattcacaga
    19741 gtataaatac tgcttcattt tcataacctt ttaagctaga tttagcttcc ataagagcat
    19801 tttttatagt caagaaagag ccttgattct atcactaata cttggatggc tgagataaaa
    19861 aaatgtatat attttacttg ttttgataaa agctttattt tctcttgcta gagctatcaa
    19921 tgcatttttc atatcttctt tgcttgtaac tttagctccg tgttgatcag ctgcaaattc
    19981 attttttcta cttaaggcat taagcatagg agagattaaa aagctaaaaa tattcgccaa
    20041 gataaacaaa agagcaaaca cgccaccatt tactccttct agatgacttt ctaagtaaac
    20101 aaattcaggt aaatttgcaa aaacaaaaaa aagtaaaaac atagttatag cgccgttaaa
    20161 taaagctttg ataatatcct tatgaacaaa atgtccaagc tcgtgtccta aaacagctaa
    20221 aagttctctt tcatttaagg cttttaataa tgtatcaaaa agcaccactc ttttgctttt
    20281 aaaaagtcca ccaaaataag catttaaacg cttatctctt ttgcttgcat caataacata
    20341 aaccccattt gcactaaacc cgcattgttt cattaaagag ctgatttttt tcagcaaatt
    20401 ttcatcgttt agcttttcca ttttattaaa aataggtgct atcaaggtag ggtagatgag
    20461 atttataatc actataatgc aaaaggcaaa aataaaggcc gcaatccacc aaaaagttcc
    20521 aaaaaaatca tagcaaaaaa gcaaagcata aaggattaaa aatccaaata ttaaagttaa
    20581 aataagactt ttcatagtgt ctttgataaa aagttttaca gtcatatttg aaaaaccatg
    20641 ggctttatct ttgataaaac tttcataaat acttaaaggt agatttaaaa tacttgtgat
    20701 tattaaaaaa gataataaaa ataaagtatt ttcaaaacga gtgttgctta agataagcaa
    20761 ttctttaaga tataaaaatc caaaacctat ccatgcaata ttgatgatta aattataaaa
    20821 attggaaaat agtttaaatt tttcattttc gatggcaata tctgctgcat tttgatagtc
    20881 tttttcgctt aaaatttgag cttgtttgtc tttttctctt tctaagaaac gaatttgagc
    20941 ataggaaatc caagataaaa gtgctgtgta aagacataaa attgcaatta aagtcattat
    21001 ttttccttga ttggtttttt gcgaattcta gcttaaaata atgaaataaa gttaatagtt
    21061 taaaatctaa aataatattc ttttcaacta agttggtgta tatttataaa aaaaggatta
    21121 aagaatgttt tttaagaaaa agatttcaca aaaacaaaaa gaaaagccta aaattccaat
    21181 caatgatgtg attttagatg acagactttg taagtttaaa aataaagtgc aaaagataag
    21241 caaagatgaa gcttcggcaa gtctgcttgc tagacaatta agcagactta tcagagctaa
    21301 taaattttaa ttttgacatt ttttcttagg gcgaaaaacc ttaataactt catcatttgc
    21361 ttctatataa gcaccttcta tcaaatcaat acagtaaggt atagccggaa aaacaggctc
    21421 taggcattct tttatagcct taggatttcc tggtaaatta atgataaaag atttattgcg
    21481 aattcctgca ctctgtcttg aaagtatagc tgttgggaca tattttaaac tttctaagcg
    21541 cataagttct ccaaaacctg gcatcatttt atcacacacg gcttccgtgg cttctggggt
    21601 tacatcacga agtgctggac ctgtacctcc gcttgtaaca atcaaatcgc attttttttc
    21661 atctgctaga taaagtaatt ttttaatgat caaatcataa tcatcgggga ttaattcttt
    21721 atgataaata atatcatttt ttatatatga atttaacact ctttcaattt cagcagtggc
    21781 tttatcttcg tatataccac tacttgctct atcgcttagg gttaaaattc ctatgtttat
    21841 tgtatccatt atttctcctt aataaatttt tataaccatc cttttttctt gaaaacaacc
    21901 aaaggtaaaa tgatagaaat taccatcacg ccaagcacta tgggataagc atagtgaagt
    21961 tcaagttcgg gcatgaattt aaaattcata ccataaacag ttcctattaa agtaggtggc
    22021 atcatggcaa cagttgcaac ggtgaaaatt ttaatgattt tgttttgttc tatgttgatt
    22081 tggctggcta aaatggtttg gatattatct aagatattaa gttgcgaaac actaaattca
    22141 accaaagaat ttaagtcttt taaaactata gtgagatttt gttttatatc tttatcgatt
    22201 ttatcgcttt tcagcaaaga agtcatagcg cgacgcttat caaacaaaga atctcttacg
    22261 cgcatattaa gctcttgtaa acttgaaata tcctttagca tttcatcata actatattca
    22321 tctttttttt ctaaaacact tgttcttaag cgtcttgctt ctttatctat ccattctagt
    22381 aaatctgcat ctttttcaac gcgcacttca aacattttat caataatatc aaaaccatct
    22441 tcaaaattct ttggactagc taaaatcctt gcttgaattt cttcaaaagt gctaaattcg
    22501 ttatatctta tagtaaataa gatattttta gcggtagcaa aagtaacaat ttctgtgcga
    22561 agcttgatta aattcctatc ttcttcatca cttttaagat ctcttactaa aaaatgagca
    22621 ttgatggtta ttgtcgcatt atcttcccaa tattttgcgc taagttctat ttcttccctt
    22681 tcttcttttg taggaaactc aagattaaat tcacttgata taaaagcaat ttctgctgca
    22741 cttggatgaa gtaagtcaat ccataaaata ttttgcggta gttcttgact atcgagatta
    22801 aaattgattc tttgaactaa agcattttga gttttgatat aaatataaag catgatcgct
    22861 ccttgtttat gactttaaaa ttataacctt gtttgcttaa aaattaactt gtttctaaaa
    22921 tgtttctaaa actcattaaa tttccaaaat attttttgaa aggaaaaaaa tgagtaagaa
    22981 atttttctta agtttaggtc ttgttgcttt attgttttca aattcacaag ctattgatga
    23041 gaatttgatt aaagctgcgc aagcagaagg tagggtaaat tctttagcta tgcctgatac
    23101 ttgggcaaac tggaaggata cttgggcaga tcttaaaaat ctttatggca tagaacatag
    23161 tgatacagat atgagttcag ctcaagaaat tgctaaattt aaagccgaaa agaaaaatgc
    23221 aagcggtgat ataggggatg taggggcttc ttttggagag atagcggtta aacaaggagt
    23281 ggctcagcct tttaagacaa gttactggga tcaaattcca acttgggcta aagataaaga
    23341 tggaaattgg cttttagctt atacaggaac catagctttt atagtcaata aagatgtagt
    23401 aaaagatata cctaaaactt ggcaagattt gcttaaggga aattataaaa ttaccttagg
    23461 tgatgtaagt gtagcggctc aagctgtgag tgcagttttg gcagctaatt atgccttagg
    23521 tggggatgaa aaagatttaa gtcctgcttt agcttttttt aatactttgg ccaaacaagg
    23581 aagacttgta aataatgatg taagtatagc caatcttgaa aaaggtgaag ttgaagtggg
    23641 tttagtttgg gattttaatg gtttaggcta tagagataaa gtgggcaaag atcgttatga
    23701 agttttaatc cctgctgatg gtagtgttat ttcgggttat acaactatta tcaataaata
    23761 cgcaaaacat ccaaacgcag ctaaattagc ccgtgagttt atactttctg ataaaggaca
    23821 aatcaatcta gcaaaaggtt atgcaaggcc aataagaatt gatcatatta ccttgccaga
    23881 tgatataaaa gccaaacttt taccaagtga gcaatacaaa aatgcaagag caatcaaaga
    23941 tcaaaaagct tgggaaaaaa gcgctaaaga actaccacaa ctttggcaag aaaaagttat
    24001 agtggatatg aaataaagga gattggatga aaaaggttat tttaacaagt gctatgcttt
    24061 gcagtgtttt atttggagtt caagagtatg aggccaattt agcagggcat attatcatag
    24121 attctaaaag tacagtaaaa cctcctaagg atgctcctga tttttttaaa acttatggga
    24181 aatttgcaaa tatcactaga gaagaaaaaa ttggaacttt taaatctaag ggaaacaggg
    24241 aaacagattt ttatttacct tttaaaaatc aacctataca aggacatagt gggataaaat
    24301 atatttcaaa aaaagatgtt ttttgggtaa ttagcgataa tggcttgggt aaaaagtata
    24361 attcttatga ttctatgctt tatgctcacg agtttaaatt tgattttaaa aactcaaaat
    24421 acgaactttt aaaaacagtt ttttttaaag atagtgataa aaaatacccc tatcctataa
    24481 ccaccgaaac aactaaagaa aggtatttaa gtggggctga ttttgatact gagagtatac
    24541 aggttatcaa tgatgaattt tatataggtg atgaatttgg tccttatttg cttcattttg
    24601 ataagaatgg gaatttgaaa gaagtttttg atgtgtatgt ggagggtaaa aaacttattt
    24661 ctcctgataa tccaagttta aaatttagcg ataagcctga tggagaaaat gagaaattta
    24721 atatcaagcg ttctaaaggc tttgaagcta tggcaagctc taaagatggt tctaaacttt
    24781 atttgctttt agaaggaagc atttataata acaacgctta tgagaatgaa aaaggtaaag
    24841 aatatctaag aatcatagaa tttgatgtaa aaaataaaaa attcactgga aaaacttata
    24901 aatatttctt agaagataaa agccattcca taggtgattt taacatgata gatgataaat
    24961 acggcatcat catagaaaga gatcaaaaag aaggcactaa agataaggct tgcaaagaag
    25021 gtgaagatac taagcattgt tttaataatg tagctcaatt taaaagaatt tataaggtta
    25081 aattagatga taaaactcat gaagctcaaa aaatttctta tatagatctt ttaaatatta
    25141 aggatagaaa taaaatttct aaaaagcctt tggtaaatga taaatttgtt tttccttttg
    25201 aaaccataga aggtgtggat atagtagatg actctcatat agttatagaa aatgacaata
    25261 actttcctta ttcttcaagt agagaaccta ataagactga tgataatgag tttattttgc
    25321 ttgaagtaaa agatttttta aagagtaaat gatgtccaaa gttattttag ttgtgcttga
    25381 tggcttaaat tgcaaaagtg ctagtataaa tatgggatat ttaaatgcgc tttgcaaaga
    25441 gaatttaggc aaattttatt ctttagaatg cgaacttcct agtatgtctc gtcctttata
    25501 cgagtgctta ttaacaggcg taaagcctgt tttaagtgag ataattaata ataaattgag
    25561 tttttcaaaa caaacaagca tttttgacct ttgcaaagaa caaggcttaa aagctggagg
    25621 cgcagcttat cattgggttt ttgagcttta taataaaaaa gaatttattc cttctttaca
    25681 tcgccacata gaagatgaaa atttaacttt gccttatgga catttttatt atgaagatga
    25741 ttatttagat tctcatttat ttgcagatgg ggagcattta agaaacaaat ataatctaga
    25801 ttttactctt atacattcta tgaatataga tgatgcagga cataaatttg gctcacactc
    25861 tattgagtat gctaataaaa ccaaaaaagt tgatattttg atttctgagt atttgcctac
    25921 ttggttagaa caaggtatta atgtaatcat cacaagcgat catggtatga cagagggtaa
    25981 aagtcatgga ggcttaagtg aagatgaaat tttagtgcct tttttcactt ttggtagtgc
    26041 tttttcgtat gaaaatgcca agataaaaca ggatgaaatt tgtggcagta tctgtgaaat
    26101 tttaggactt aaacacgata agagatataa tgatgaaatt ttaaaggcca aaaaatgaaa
    26161 gaaaaatttc tagccttttt aagtatttta ccttttttta tagtttttac tttttttatg
    26221 atagcacctt tgatttggat tgtttttaat gctttttatg tagaagagga tgaaatttat
    26281 tctttagcca attttataca tatttttgag tccaaattct atctacaaag cattataaat
    26341 tctttacaaa tcagttttat ttctagtatt tttggacttt taatagggct tttggcgagc
    26401 tattctttat ttgttttagc tccatcaaaa atatgtaaat ttcttttttc tttaaatacc
    26461 atgataagta atttttcagg agttccttta gcttttgctt tcattatagt tcttggaagc
    26521 aatggtgtag ttaatgtgtt tttgaagaat ttaggtatag agccttttgt tagtgtttat
    26581 gctaatttcg gggtaaatat tgtttatgtg tattttcaaa ttcctttggc gatcttgctt
    26641 ttgcttccag cttttaaaag tcttgaaaat tcacatttaa atgcttgtaa aatgttaggt
    26701 ggaggcaatt ttttatattg gttaaaaata gctttgcctt tgctcgctcc tgctttgttt
    26761 ggtgtttttg tgattttatt tgccaatgct tttggagctt atgcgactat ttatgcttta
    26821 agttcgggaa attttaatgt cgctcctgta agaatcgctg ctttaatcgc aggcgatatc
    26881 aatcttgatc cttatatggc tagtgcttta agtatcatta taactattat catgcttgtt
    26941 gttaccttta tagccaattt cctttctaaa aaatataatt ttaaggtgct ttaaatgaat
    27001 gaaaatttga gtttaaaagc taaaatttat cattatgcag ttttgttttt ggtttttttg
    27061 tttttagctt tgcctttaat ggctactttt ttatattcta tttccacttc ttggggtgta
    27121 agtgttttgc ctgatgatct tacgcttaaa tggtatcaag aactttttca tgacgaaaga
    27181 tttttacttg ctctttggca ttctttgctt gtttgtgtgg gcagtatttt actttctgtg
    27241 attcttgttt ttcctttggt ttttgtgcta aattattatt ttttaaaatt aaaagccttt
    27301 gtaaatatac ttattatcat gccttttgct gtacctccta tagttagctg tgtggggctt
    27361 ttgcaacttt atgctgacaa tataggaggc acagcttgga tactcatttt tacttatttt
    27421 actatagctt tgccttttat atatagggct ttagataatg ctatgtctaa tgtcaattta
    27481 aatgaactca tcgcatctaa tgctatgctt ggaggttctt taatgggagc gatttttaag
    27541 cttgtcttgc ctaatttaag aaatggaatt ttggtggcag tttttttaag tttttctttt
    27601 ttaataggcg aatttttata cgcaaatatt cttgtaggaa gtgcttatga gactttgcaa
    27661 gtttatcttt ataatatcaa aaatcaaagt gggcattatt ctagtgcttt ggtaatagtt
    27721 tattttgtgt taatttttat aacaactttt atagctagtt tgattaagga gtaaaaaatg
    27781 gcttatttaa agattaaaaa ttttaaaaaa gcttatgggg ataaaattat ttttgaagat
    27841 attaatttta gtgctaaaaa gggtgagttt ataacccttt tgggcccaag tggctgtgga
    27901 aaatccactc ttttaaggtg tatagcaggg cttagccaaa ttaatggagg aaaaatttct
    27961 ttaaatgata aagatcttac taaattaagt cctcaaaaaa gaaatatagg tatggttttt
    28021 caaaattacg ctctttttcc aaatcttaac gtttttgaaa atgtagcttt tggtttaaag
    28081 atcaaaaaaa tggataaaaa ggacatagaa aaaagagtga aaaaaatgtt aaaactcgtc
    28141 gagcttgaag aatacgctaa aacttatcca cataagcttt caggcggaca aatgcaaaga
    28201 gtggctttag caagatcttt ggtgactaaa cctgatttac ttttgcttga tgagccttta
    28261 tcggcacttg atgctaaaat tcgtaagcat ttaagggtgc aaattaaaga aattcaaaaa
    28321 gaacttgaac tcaccactat ttttgtaacg cacgatcaag aagaagcttt agagttatcc
    28381 gataggatta ttttaatgaa tgagggtaaa atcatacaaa attccaacgc aaacaatctt
    28441 tatcttttgc cagaatctca ttttgtggct agctttatag gaaattacaa tattttaagc
    28501 cctaaagagc ttgatagctt gggtttaaaa cacgatttta aaaaagatat agccttgcgt
    28561 cctgaaacca tagaaatttc taacgaaggc ttagaggcta agatcaaaga aaaatcattg
    28621 ctaggtaata tcatacgcta tagggttaga gtgcaagaaa ttgaatttaa ggtagatact
    28681 ttaaatttta gcactcatag tacttatgaa gcaggtgata aaatcgcttt aaaattcaat
    28741 ctttctttag caaaagagtt aaaatgaagc ttgttttatt tgatttagat gatactttaa
    28801 tacaaggcga tagtgctaaa ctttggctta aattttgtgt tgaaaaaggt tttttacctc
    28861 aagaatattt agaaaaaatc gttttttatc aaaaacaata tcaagaaaaa aagcttgata
    28921 tggatgaatt tatgactttt tttcttcaaa gtgttaaggg taaaaatgaa gatagaattt
    28981 catctttagt agatgaattt ataaaaattt atataaaacc ttatgaaaaa gctaaagaac
    29041 ttataatcaa atatcaagat caaaggtgta ttataatttc agctacggct gaatttttag
    29101 ttagaaaaat cgcctctttt ttgggagtga gagaaagcat agccataaaa tgtgagcgtg
    29161 tgggtgataa atttagtgga aaagcttacg ggatttatag ctttaaggaa ggcaaggttt
    29221 taagacttaa ggaatatttg ggtaaagatt atgaaaaatg gatgaaagat tcttattttt
    29281 ttagtgattc tatcaatgat ttacctttac tagagtctgt tagcaaagcc tttgtatgta
    29341 atggcgatga aaaaatttta aaaattgcaa aagagagaaa atatgaaatt ttaacttttt
    29401 aagctataag cgtgaaaatt cacgcttatt ctaattcata ttttttaatt aaagtatcat
    29461 aaaatccatc agtttttgct tcatctatgc ctttgttaaa tatttcaata atatcttttt
    29521 gtttattttt atcaaaagca aaactaaagc cttctcctcc atctgtttct tggtagaaac
    29581 ttaccaattc tggattttca gctaaaaaac ctttagcagt atcttgatca gctacaatag
    29641 catcgatttt gttgtttttt agtgctaaaa cagctatgtt taaatcttta ttgctttgta
    29701 cttgtgcatt tttgatagct tttgcagtat tttcttgtaa agttcctaat tgaactccta
    29761 tttttttgcc ttctaaatca ttttttgttt gaagagagtc gttgtttttt agcttaagat
    29821 aaagattttt actcatatag taaggtttgg taaaatcaac actttgtctt ctttcatcag
    29881 ttgcgctcat agctgaggca atcatatcga ttttgccagc ttttaaagca ggaatcaatc
    29941 catcgaaatt ggtttcaacc caaacaattt taataccatt ttttttggca atctcttcaa
    30001 ccaaatcagt atcaaaacct gtaagttttg agttttcttt ataattaaaa ggtttataat
    30061 ttggagcagt tccaaccttt aattctacac ttgcatttga ttctttattt ttagaatcac
    30121 tacaagcacc taaaaataaa ccaactaaag caactagagc aatgcttaat atttttttca
    30181 tttttttcct ttgatataaa atgttttaaa attatactta ttttaaattt atatttaatt
    30241 aagtctggat caatttttag aaaagttata
//
LOCUS       DARGBD010000012        27933 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.012, whole genome shotgun sequence.
ACCESSION   DARGBD010000012 DARGBD010000000
VERSION     DARGBD010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27933)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27933)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27933
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.012"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..2096)
                     /gene="copA"
                     /locus_tag="SFZ04_000429"
     CDS             complement(<1..2096)
                     /gene="copA"
                     /locus_tag="SFZ04_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HEG8064734.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLKDQEKRKDIIAKIQNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGLKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDHFFDLKGEGRVIVGSGIKYKEDNDNYLVGNAQFLHENEIDTKESDIFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFKKTLFVGDGINDAAALSAASVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRGIIKLNLFWAFIYNVLCIPIAAGFIPFISLSPHIAVLAM
                     CFSSITVVLNSLRLKR"
     gene            complement(2096..2290)
                     /locus_tag="SFZ04_000430"
     CDS             complement(2096..2290)
                     /locus_tag="SFZ04_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HEG8064735.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVECL"
     gene            complement(2280..3230)
                     /gene="czcD"
                     /locus_tag="SFZ04_000431"
     CDS             complement(2280..3230)
                     /gene="czcD"
                     /locus_tag="SFZ04_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HEG8064736.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIMGGIVVYFSGIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(3306..3569)
                     /locus_tag="SFZ04_000432"
     CDS             complement(3306..3569)
                     /locus_tag="SFZ04_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEG8064737.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(3640..4134)
                     /locus_tag="SFZ04_000433"
     CDS             complement(3640..4134)
                     /locus_tag="SFZ04_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEG8064738.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIALAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(4131..4907)
                     /locus_tag="SFZ04_000434"
     CDS             complement(4131..4907)
                     /locus_tag="SFZ04_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HEG8064739.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KVKVVFGQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            4974..5900
                     /locus_tag="SFZ04_000435"
     CDS             4974..5900
                     /locus_tag="SFZ04_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEG8064740.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFAYMIGEHGDSQFAALSNASILGQNLLDFYKQRLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKNGVEK
                     VFELKFNEKEKTKLENSKQQIKNAIQSVKDKI"
     gene            complement(5897..6499)
                     /locus_tag="SFZ04_000436"
     CDS             complement(5897..6499)
                     /locus_tag="SFZ04_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8064741.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGDLDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEAKFAKFED
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVRMKLINFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(6580..6807)
                     /locus_tag="SFZ04_000437"
     CDS             complement(6580..6807)
                     /locus_tag="SFZ04_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064742.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(6818..8269)
                     /locus_tag="SFZ04_000438"
     CDS             complement(6818..8269)
                     /locus_tag="SFZ04_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HEG8064743.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATVGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLILFNIAYLSDFALPLNNGPIALPGAGSGATTILDDDDGVVNLGDLTIANLHFEN
                     YKAFGTNFNYFLSLGYSHGNNSQLSPTLSGILQTQGYNGKFNEEDGYAVHVGGRYDFT
                     KALKVGYEFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTN
                     IQNIWGNRGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(8433..8915)
                     /locus_tag="SFZ04_000439"
     CDS             complement(8433..8915)
                     /locus_tag="SFZ04_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8064744.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(8925..9632)
                     /locus_tag="SFZ04_000440"
     CDS             complement(8925..9632)
                     /locus_tag="SFZ04_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEG8064745.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            9741..10082
                     /locus_tag="SFZ04_000441"
     CDS             9741..10082
                     /locus_tag="SFZ04_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8064746.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQVLGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIVG
                     IIMINIGEVKE"
     gene            10082..10390
                     /locus_tag="SFZ04_000442"
     CDS             10082..10390
                     /locus_tag="SFZ04_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8064747.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKHKIWGLVAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(10408..12000)
                     /locus_tag="SFZ04_000443"
     CDS             complement(10408..12000)
                     /locus_tag="SFZ04_000443"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEG8064748.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFHTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVNEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSTNENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(12012..12251)
                     /locus_tag="SFZ04_000444"
     CDS             complement(12012..12251)
                     /locus_tag="SFZ04_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEG8064749.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(12253..12876)
                     /gene="gmk"
                     /locus_tag="SFZ04_000445"
     CDS             complement(12253..12876)
                     /gene="gmk"
                     /locus_tag="SFZ04_000445"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEG8064750.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(12873..14480)
                     /locus_tag="SFZ04_000446"
     CDS             complement(12873..14480)
                     /locus_tag="SFZ04_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG8064751.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNSN
                     KTLETQNLEHDNLEQETIKEQTQEDTPIDLDLTLEDGESEKEDLSQEHTALDTEPSLD
                     ELDDKNEEIEKQELLDDSKTNTLEMQEELSESQDDNSNKTLETQNLEHDNLEQETIKE
                     QTQEDTQIDLDLTLEDGESEKEDLSQEHTALDTEPSLDELDDKNDEDLEDNKELQANI
                     SDFDDLPEVEEQEKEMDFDDLPEDAEFLGQAKYNEESEENLEEFAPVVEEDVQDEIDD
                     FASNLSTQDQIKEELAQLDELDYGIDSDNSSKVLEDFKDEPILDDKELGTNEEEVVVP
                     NLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVTKDDNSEEIVNELSQSIAGAITS
                     SIKDDTLKAALKGMNMNININISFKED"
     gene            complement(14537..15304)
                     /gene="fliR"
                     /locus_tag="SFZ04_000447"
     CDS             complement(14537..15304)
                     /gene="fliR"
                     /locus_tag="SFZ04_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEG8064752.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFAMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(15291..15926)
                     /locus_tag="SFZ04_000448"
     CDS             complement(15291..15926)
                     /locus_tag="SFZ04_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8064753.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKTYTINANGIC"
     gene            complement(15939..17012)
                     /locus_tag="SFZ04_000449"
     CDS             complement(15939..17012)
                     /locus_tag="SFZ04_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEG8064754.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAVEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIILGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(17012..17803)
                     /gene="rpsB"
                     /locus_tag="SFZ04_000450"
     CDS             complement(17012..17803)
                     /gene="rpsB"
                     /locus_tag="SFZ04_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEG8064755.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(17919..19082)
                     /locus_tag="SFZ04_000451"
     CDS             complement(17919..19082)
                     /locus_tag="SFZ04_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8064756.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNKVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(19210..20334)
                     /locus_tag="SFZ04_000452"
     CDS             complement(19210..20334)
                     /locus_tag="SFZ04_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8064757.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(20331..21581)
                     /locus_tag="SFZ04_000453"
     CDS             complement(20331..21581)
                     /locus_tag="SFZ04_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEG8064758.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(21583..22086)
                     /gene="petA"
                     /locus_tag="SFZ04_000454"
     CDS             complement(21583..22086)
                     /gene="petA"
                     /locus_tag="SFZ04_000454"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEG8064759.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(22177..23463)
                     /locus_tag="SFZ04_000455"
     CDS             complement(22177..23463)
                     /locus_tag="SFZ04_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEG8064760.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     AFFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILYFSREKNQEKIYISTKKMM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVFLFLFVISFFIGEIFNIKISFFALLWAGIFWLIILKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYAFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            complement(23464..25323)
                     /gene="mnmG"
                     /locus_tag="SFZ04_000456"
     CDS             complement(23464..25323)
                     /gene="mnmG"
                     /locus_tag="SFZ04_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEG8064761.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVIKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            complement(25411..25908)
                     /gene="cetB"
                     /locus_tag="SFZ04_000457"
     CDS             complement(25411..25908)
                     /gene="cetB"
                     /locus_tag="SFZ04_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HEG8064762.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            complement(25926..27305)
                     /gene="cetA"
                     /locus_tag="SFZ04_000458"
     CDS             complement(25926..27305)
                     /gene="cetA"
                     /locus_tag="SFZ04_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HEG8064763.1"
                     /translation="MVKNGLLSTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            complement(27425..27919)
                     /gene="cetC"
                     /locus_tag="SFZ04_000459"
     CDS             complement(27425..27919)
                     /gene="cetC"
                     /locus_tag="SFZ04_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HEG8064764.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKSKDGNFYWVFANVSASFDANGDII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFNL
                     QENN"
BASE COUNT         9604 a         5177 c         3503 g         9649 t
ORIGIN      
        1 attcttttaa gtcttaaaga attaagcact acagtaatag aactaaaaca cattgcaagt
       61 actgctatat gaggacttaa agagataaaa ggtataaatc ctgccgcgat aggaatgcaa
      121 agtacattat aaataaaagc ccaaaaaaga tttagcttaa taataccgcg tgttttttta
      181 gcaagtttaa aacatttaaa aatcgctgat aaatcatctt ttatcaagat aaaatctcct
      241 gtttttttag caagttcatt tgcctttgaa aaactcatac tcacacttgc agcagataaa
      301 gccgccgcat cattgatccc atctcctaca aaaagagttt ttttaaattt ttgaatgatt
      361 tgtagttttt cttcactctt aagctgagcg tgaaattcgt ctatttgtaa ttctttggct
      421 attttttcta cattttttac atgatcgccg cttaaaataa aagttttaag attttgcttt
      481 tttaaattta acacaagctc tttggctcca tcttttaaag cattgcttaa caaaacaccg
      541 cctaaacact ttttattctt agcaaaatac accctaacat attctttaaa agtatcaaaa
      601 aagatatcac tttcttttgt gtcaatttca ttttcgtgca aaaactgtgc attgcctacg
      661 agataattat cattatcttc tttgtatttt ataccagaac ccacaatcac tcttccctca
      721 ccctttaaat caaaaaaatg atctttatgt aaagccttag ctataggatg agagcttaaa
      781 ctttcaattt gacataattt atcaaaatca tctttagaaa gattgtgttt aaaaatactc
      841 aaattttcct ttgttaatgt acccgtttta tcaaaaaaag catacttaac taaggctaat
      901 ttttctaaag cagcaggatt tttaataaga atgaaatttt ttgccgcatt tgcacttgcc
      961 acaaccaaag ctataggcgt tgcaagacct aaagcacaag gacaagagat caaaagcaca
     1021 gcacaagagt gtaaaaaagc tgtatttaaa tctgctttta gcacccaaaa aacaaaaact
     1081 aaaaaagcaa aaaatattat accccctaca aagtatttag aaatttgatc tgctaaattt
     1141 gccaaaggac ttttgatact tcctgcttca aaaactagat ttttgatttg ttctaaagta
     1201 ctatccatgg cctttttgtt tgctttgatc cttaaagcac catttaaaac tactgctcct
     1261 gcttgaactt catcgccttc tttttttaaa acaggcaaaa actccccatt taaaaaactc
     1321 atatcaagct ctgcactccc taaaagcact actccatctg caacaatact ttctccttct
     1381 tttaccaaaa gtacatcgcc acttttgaca aaagaacttg aaatttcttt gatactttca
     1441 tcttcaagca aaatttttgt cttttttgtg tctatatttt ctaaaattct ttgataatct
     1501 tgtgccttaa atttagcctt actttcaaga tattttccta aaagcacaaa ggaaataatc
     1561 atcattgcac cactaaaata caaatcttct tctttgaaaa tttgcaaata caccaaaaaa
     1621 gaatacacaa aagcactcaa agtccccaaa gctacaaggg tattcatatc taaattttta
     1681 cttttaagtc ctaaaaaagc atgagaaaaa aagtctctcc cacaataaaa tatcccaaaa
     1741 aaactcaaag ccatttggat attttgagaa aaagaacttt taacaaacat ttcaaaatac
     1801 ataataatca cactcaaaac tatacttaag agcaaatttt ttcttaattc taagtgtttt
     1861 tttgccttgt atgcgttcaa gctttgttca tcttctaaaa tttcaaagcc taaattttga
     1921 atttttgcga tgatatcctt gcgtttttct tgatctttaa gtaaaaaaac cccgctagaa
     1981 ttcacataag aaacactagc atctttaaca ccatcaattt ttttacaagc tctttctata
     2041 gcgttagaac aattaacgca agtcattttg cctattttta tacgcaattc ttccattata
     2101 aacactctac gatctcaaaa cctaaatctt gaaattcttt tgtaaaattt gatacttgat
     2161 tttcttctaa atttaaactt aaaatttttt gctccaaatc cacttctata tttccaaatt
     2221 catcttcaag agaatttttg atcaaattta cacaattcat gcaattaaca ttttttactt
     2281 taaatttcat tttcactcct tataggttgt atggtaatgt gcccgatttc aaattcatgc
     2341 aataacttat gagataaatc ctgagatagt ttttcaaatt cctttagatt gcaaactctt
     2401 acttttaaat gcatagaggc tactagcatt ttattagtga tttgagtaat atgcaaatcc
     2461 actacctcat ccacactagg atttaaaagc aaaacttgtc ttactttttc tatatccaca
     2521 ggagaacttt caagcaagac attagcgctt tgtttaagca agataatcgc ccatcttaaa
     2581 agcaagattg ataatacaat agctaaaatc gtatctatat aaacaatacc gctaaaatac
     2641 accacgatcc cacccataat aaccgctaaa gaacctaata aatcactcat catatgcaaa
     2701 aaagcagact tcatattgac attttctaaa tttgcaccct taaacatcat caaagcatta
     2761 atcccattta ccaaaaagcc taaaatagct acaattatca tggttttagc gtcaatttct
     2821 tttggattaa taaatttttc tatagcttca taaatgataa ataaagccga taaaataatg
     2881 gttagagcat tgataaaagc cactaaaact tcaagacgaa aatacccaaa ggtcttttga
     2941 tgatcttgcc atttttctac agctataatg gctaaaaaac taagagctaa ggcaaaaaca
     3001 tcagaaaaca tatgcaaagt atcgcttaaa agtgctaaag aatttgaaag gattgaataa
     3061 ataaattgca caagcatcat agaaaaagtc attaaaagag aaatttttaa aatcttttta
     3121 tccacactcc ttgcatcagc atgggaatga tgatgttcat gagaatgttc ttcgtgatta
     3181 tgatgacaag atttgttagc taaaggctcg tgtgataaaa atttatacat cttatatcct
     3241 tttttgcttg acattttaag atattaagct aaaaaggata taaatatttg ttatttttat
     3301 aaaaattaaa agtcaaaaag ctcgcctagc caactttctt tctttttctt tttataatag
     3361 tcattgtgct gatgataagc tgagtcatta tatcttgact cttgtcttgg agcttggtta
     3421 aaatttgctg tattagggac actgcgttct atgattttgt caagttctcc acgatcaagc
     3481 caaacgccac gacactttgg acaataatca atctcaactc cactcctatc actcataacc
     3541 aaatctacat tacaaactgg acataacata caataccttt tttttaaatt tttgatttaa
     3601 aattataaaa agaaatatta aacaaattta caacaagttt taatgttttt ttgcatgtct
     3661 agtcatcata aaactttgtt caaaaaatat aagcaaagta acactcactc ctatagctag
     3721 agccaaagtc acagaaacag ttgtaaaaaa ataatcaaaa aattgaacca aaaattcaga
     3781 cttagccttc aaatcatcac tgcgtataaa agaaataaga tacaaaattg ctttataagc
     3841 ataaattcca ggtatcatag gaataagagc agggaaagcg ataatttcag caggggtttt
     3901 gataattttt gctaaagcaa ttcctaaaca tcctatgcaa aatgaagcaa caaaagttgc
     3961 aattgctaaa gtttgaaaat gaaaatattc caccaaggta aaacgaagcc catgtgcaat
     4021 tgccgctaaa agagcagata aaataagggt ttttaaaggt ggattacaag cataagcaaa
     4081 cccaaatccc gccacagcag caaaaaacat atctcttaaa ataaattcaa tcatcttaaa
     4141 atcccaaaat ccgaaatact aagcgtcatg taaattccaa gtgctataca acaaatcaaa
     4201 atagccacgc tgataatacg gctaagcccc attaaaatat gatcttttaa tatatcaatc
     4261 acagaattta taaaaaatac ccctggtata agatacaaga tactagaacc caaagccaca
     4321 tcagaagtat tggtatatcc catatccagt ccaaaaaata caaaccacga tgagataaaa
     4381 gaacaaagga tgtattgaat tcttaaatca atctttgctt tagttaaaat atatcttaac
     4441 aacaatccca caaaagttgc aaaaaatact aaatttccag caccaaaatc accaccaaaa
     4501 agcctacaaa aagctgaatt tgccatagaa acaaataaaa gattaagcaa ataagaatgc
     4561 tttttttgtt gagaaatttg cccaaaaaca acttttactt tttcaagatc gtatttgtga
     4621 tcatatatag cccagcttaa agcacttaaa tcaaaaataa gcttaaaatt aacatgggca
     4681 tgatgattag gtataacata agttctttga atggagttat catccatatc cacaacattt
     4741 aaagtaatat gatgaaaaaa gaaattgata tttatctcat agccataaac ctcagctatt
     4801 cttcctacgc attttgccac cctagctgta taagttccag cacctagtaa agttttagta
     4861 tatacgatta aaaaattagt taatctttgt atatcaggtt tttccatatt ttaataatct
     4921 ttgattgaat ttgttataat tatagcaaat tttaaaataa ataaggagaa aaaatggcaa
     4981 aaatcggtat agttggttta ggttatgtag gagctgctag tgcttatagc atagttactc
     5041 aaggaatttg ttcagaactt tacttatatg atataaaaca agatttagct ctagctcatg
     5101 caagagattt ggaagatatg tcagccattc atttttctta tacaaaaatt tttcatgtgc
     5161 caaatttaga aaatttagct tcttgcgata ttatcatttt agcttttaga aaagaaagct
     5221 taaaagaatt acctagtcgc ttagtagaac ttcaaaacaa tatcctcgaa cttaaagaca
     5281 ttgtcttaac cttaaaaaat gctaatttta aaggcaaata cattgtcgca acaaatccaa
     5341 atgacaccat aacttactac actcaagtat taagccaatt acctaaaaat catgtttttg
     5401 gcagtggaac aaatttagat agttcaagac ttaagaaatt tttagccaaa gatttaaaca
     5461 taaattcaaa agatattttt gcttatatga ttggcgaaca tggagattct cagtttgcag
     5521 cactttctaa tgcaagcatt ttaggacaaa atttattaga tttttacaag caaagattag
     5581 gcaaagattt agacatacaa gaactcgaaa aagccgtgat tagcgaggga tatttcatct
     5641 atgaacgcaa aggaaggaca gaatttggca taggaacttc ttgtgcaaat ttagccaaag
     5701 ctatcctaga agatagaaaa agtttgcatc ctgtaagtgt ggtttttgat gatatagctt
     5761 tttcaatgcc cgctatcata ggaaaaaatg gtgtagaaaa ggtttttgaa ttaaaattca
     5821 atgaaaaaga aaaaacaaaa ttagaaaatt caaaacaaca aatcaaaaac gctatacaaa
     5881 gcgtaaaaga taaaatttaa gcctttttaa aaggcttttt gattttgata taaattaaac
     5941 ttgctaaaat cacaaaaaca attataatga ttaaaatttg agttaaataa gttttaatca
     6001 actcttcatt ttgccctata taataaccca aaaatacaag tatagccacc caaatagcac
     6061 taccaagtgc agtaaaaagt ataaaattta taagtttcat tcttactaaa cctgcaggca
     6121 tagaaatata ctgacgaatc cctggtaaaa gacgacaagt aaaggttgaa aattccccgt
     6181 gtttgttaaa aaaatcttca aatttagcaa atttagcttc atttatacca aaatacttac
     6241 cccattttaa tacaaaattt ttgccccaaa aaaagcaaat atagtaatta atcaaagctc
     6301 ctaaaacaga acctaaagtc ccgctaagta tgcaaagagt gatatcaaga tcacctttat
     6361 gtgccaaata tccagcaggt atcataacaa cttcacttgg aaaaggtata aaacaactct
     6421 ctaaggtcat taggataata atacccaaat acccccaagc actagccgtc tcaacaataa
     6481 aagaaatgat ttcttgcata ttagccttat ttgaagaaaa ttttaaaaaa ttgtagctta
     6541 aaagattaaa cagtaaaaag cggttttaca ccgctttttt tatttacctg caaccgaaac
     6601 ttgatttgga ttgtccgctg cacgagcgat catacactct tttaaaacag cagcatcagc
     6661 tggatcgcta acttttttat taatccagcg ttcaacttgt ttcattgttt ttgactctgg
     6721 ctctggagct tcgtattttg ccatcaaact tgcacaatca gccaaagcaa tgataggtaa
     6781 taaacttgca aaaagtattt ttctcatctt ttgctcctta gaattttaca ttatacatta
     6841 acatgatatt atcagctctt gctttatctt ttttcgctcc accaaatggc aagccacgat
     6901 taccccaaat attttggata ttagtataac ttaagcgtaa gaattgatat ctatcaagtt
     6961 gataaatcac ataaaaatca tgtgctgttc ctcttgtcat tcttatatta agtggatcgt
     7021 tgatacttgg acggctcata gtataccagt atctacttcc ccagaagaac tcatacccta
     7081 cttttaaagc cttggtaaaa tcatagcgtc cgcctacatg cacagcataa ccatcttctt
     7141 cattaaactt gccattataa ccttgtgtct gaagaattcc acttaatgta gggcttaatt
     7201 gactgttgtt cccgtgagaa taacctaaag atagaaaata attaaaattc gttccaaaag
     7261 ctttataatt ttcaaaatga agatttgcta tagttaaatc tcctaaattt accacaccat
     7321 catcatcatc aagaatagta gtagcaccgc taccagcacc aggtaaagca attggaccat
     7381 tgttaagtgg caaagcaaaa tcgcttaaat atgcaatatt aaataatatt aaattatctc
     7441 ccataccttc tataggaagc tctccttcta ctgcagcata gtaaagattt gcatcagcat
     7501 ctttttgatc gctcatccag tctcttacct tgccttcttc atcccattga taagttttac
     7561 cataagctgc acggatagct accttatgat cttgcaaact ttcaggctta taagtgatca
     7621 ctgctgcatc acctagagca ttaatcgcta aggctggata agttgattgt cttagagcat
     7681 tgtttctaag attacttcct ggaccatcgg ttcctggttg tcttcctaca gtcgcaatcc
     7741 attcaggtgt gatgtagtag tcaagataag ctctatctac ataaagtaca ggcccacttg
     7801 atcttgtgtt tcttcctgca tctaagtcaa gtggacttcc actccaaccc atttgagacc
     7861 agtttttagc catagataaa cgaccataga atttggtttt atcattaata tcagcattca
     7921 tatttaaatg aagctcattc atccatttgt tattagcact ataatcttgt ccgctaactt
     7981 tatagtttgt atttgaaact gctgttgaaa actcaagtcc aaatttaacc ttgctcaaag
     8041 cagcttggaa ttctgtttca tcggctctat cattaagatc agcaagttca gcttttacag
     8101 cttcattttg cttagcttga gcttcccttt cttttctgat ttgtgcaagt tcagcttgaa
     8161 tttgtgcaag ctgtttttga agcttggtta tctcatcatc tgtattttta gcaaaaagtg
     8221 aagatgaaag aagacaagca cttaaaataa gtgaaaactt agttttcata atcataactc
     8281 cttgtaattt tgttacattt agcaaattaa aattgtgatt atagaaaaaa aagtttaaaa
     8341 aaaaattata cattaatcat ttttagctag tcaaacttat gactagcttt gtaaatattg
     8401 tagttttaaa aaagttttaa aattttaaat ttttaaattt tatcgcaaat ttttatgtct
     8461 aaaattttat ctccttggcg tatagagtct aaaacttcta aactttcttc atcttttgga
     8521 tcaatttgcc caaaaacagt atgaacccca tctaaatgag cttgagggct gtgacaaata
     8581 aaaaattgag aaccacccgt atcgcgtcct gcgtgtgcca tagataaggt tccacgctca
     8641 tgtttatgct cttgatcatc acattcgcaa atgatttcat atccaggccc acctacacca
     8701 ttgccgtgtg gacaacctcc ttgtatgaca aaatttggga tcacacgatg aaaatttaaa
     8761 tctttataaa atccctcatt agccaaagta gcaaaattac aaaccgtttg cggagcctca
     8821 tcgccaaaaa gttttaattt cattgtgcct ttttcagttt ctataagagc aaatttgtat
     8881 tcatttactt tgcttgtgtc gattgttttt atcattattt ctccttaatc tatatttgta
     8941 taaacagctt gaacatcatc gtcatcttct aacttatcta aaagtttttc tatatcgcta
     9001 agctgttctt cgctaaagct tacaggattg tttggtatat actcaagtcc tgctttttta
     9061 agaactaaac ccttagtctc tatagcagaa cttagctcac caaaggcagt ataatcacca
     9121 ctaattacta actcttcttc attttgttct aattcttcaa gccctgcatc gatcaaatca
     9181 agttctaatt cttctaaatc tcctgcaaat ttttcaagat gaaaaaccgc ttttctagta
     9241 aacataaagc ctaaagatcc attttgtaaa acttctccac catttttgct aaaaatggct
     9301 ttaacattag ccacggtgcg cgtagggtta tcgctcatac attcaactat aaccaaagct
     9361 ccatgtgcag cttttccttc ataatgaatg tttttaatat ctgcgctatc ttttccactc
     9421 gcacgcttaa tagccgcatc tatattatct tttggcatat tatttgcttt tgctgtggct
     9481 atagcacttc ttaattttgg attcatatca ggatcagtgc caccttcttt agcagctact
     9541 tgtatggctt tagcaagctt aggaaaaagc ttactcattt tatcccatct agcctcttta
     9601 gaagctcttc ggtattcaaa cgctcgtccc ataaattctc actttcttta aagattttta
     9661 aacttaaaag tataaactaa aaaggctaat taaagcttta aatggtatga ttttaccatt
     9721 tatttttggg gagaagcttt ttgaatatcg caaaaaaaga actttttgtt gcttggtttt
     9781 tcttgattgc tgctattgta tttgaagttt taggcactag ttttttaaaa atggaaaatc
     9841 aagttttagg ctatatattt atggctttat ttatagcttt ttcttatttt tttatgggca
     9901 aggcgattaa aaaaattcaa gtaggcatag cctatgctgt atgggagctt ttagggatta
     9961 ttcttatact tttagtttct tttatagttt ttaaagagag tttaacctta actcaaattc
    10021 taggcattat tctttctatc gttggaatta tcatgattaa tataggcgag gttaaagaat
    10081 aatgtatatt tttatcattg ttttatcagc attgttagat atcgtagcaa atttattgct
    10141 aaaaaaatca gatggtttta agcataaaat ttggggcttg gttgcgattg tcaatgctat
    10201 acttgctttt tttctacttt ctttttcttt aaaatatgtt cctttaagca tagcttactc
    10261 aacttggggt gctataggca tcataggaac ttgtcttggt ggatggattt tatataaaga
    10321 aaaattaaac aaaataggaa ttttaggtat cattatcgta ataatagcag tatttttgct
    10381 aaattattaa aacagcaaaa tgcggtttta atgttccatt ttgttttttg cttcaatacc
    10441 cattaaagaa aatgcggttt taatactaag agcaaccaaa gaaaataatt taagcaaatc
    10501 attttcattt gtagagccta caactttatt ttcattgtag aatttatgaa aatttgcagc
    10561 taaattttta agataatcag gaattttttg caaagctcta gcctcaaaag catcgtttaa
    10621 aacagccttt aaattcaaag cttcaaaaag caaatttacg ccatcttgat ttaaactttg
    10681 taaatcagct ttcattacat catcgatttt tttaccagct ttagcaaata cttgatgaat
    10741 tctagcgtgt gcatagttga tataatacac aggattagaa ctatcttctt tttgcaaatc
    10801 actaatatca aattccaaat gcgtatcgca ttttttgctc aaaaagatat aacgcaaagc
    10861 atcacttcct atctcattaa ccacatcgct catcaagata aaatttcctg ctcttttact
    10921 cattttataa ggttctccat ctttaagtag ggaaaccatt tgtgctaaaa taatctcaag
    10981 attattagag tcaaatccca aaaattccat cgcagctttc attctaggga tataaccatg
    11041 atgatctgct ccccaaatat taatacactt tccataacca cgactcattt tatctttatg
    11101 ataaacaata tctgctgcca aataagtccc gcgtccatct tcacggataa ttaccctatc
    11161 tttttcatcg cctttttgcg aagaagcaag ccaaatttta ccttcttgct cgtaaattcc
    11221 tttatgctct tttaaagatt ctaaagttgc atttaaagca tcataatacg atctttcgct
    11281 tacatagctg tcaattttaa tctttgcttg ttctaaattt tgtttaatca aaacaagcat
    11341 tttatctttt gcccaatcag ccaaactagg gatattttct tcgctaaaaa attctttacc
    11401 aaatttttca aaagcttctt ttgctaaatc cgctatatac tcgcctttgt aatattgctc
    11461 tggatattca acattttcat gaagtatact ttctttcaca cttagtaaaa tagaaagtcc
    11521 tagtaaataa atttgattac ccgcatcatt gacatagtat tctgtatgaa atttatagcc
    11581 caaatgtctt gcaagtcttg ttaaggtgtc tccaaaaaca gcgcctcttg catgtcctat
    11641 gtgtaaaggc ccagtaggat ttgcactcac atattcaagc aaaaaacttt cttgtttttt
    11701 ttctccttta gtaaaatcat ttggatttgt taaagcctga tttgcaagtt catttaaaaa
    11761 agttttggaa attctaaaat ttaaataccc atttacagct tcaactgatt caaaacaatc
    11821 atgattttga aatttgctcg ctaagtcgct agcgatcaac ataggggatt tttttaattc
    11881 cttagccagt gaaaaagcca aaggggtagc aaaatgtgct aaatttttat cctttggatt
    11941 ttcaagcgca aaatcacact ctaaaatctt tttaatttca ttaaaaataa tacttttcaa
    12001 aagactaaac cttaagcttt ttttgtttcg tctatacttg catcagcatt tgtattatta
    12061 gttgtgtttt tgttttcttc tattttttga gtattttttg ctacttcatc atcattattc
    12121 atttcatctt taaaagtttt aatacctttg cctaaaccct ttgcaagttc tggaattttt
    12181 tttgctccaa aaagcaatac aacaatcaat aaaataatca accaatgact tggacttgac
    12241 caaccaccca ttttattctc cttcattcca aatattttga atttgcccta gattctgccc
    12301 tttggttcta aatttatggg cgattaaaat cgctcgcaat gcttcataac tttgctttaa
    12361 ctcatcgtta atgataagat aatcatactc gctaagctct ttcatttcat cactagcgtt
    12421 ttgtaatctt ttttctagtt gtattattgt atcagtattt cgcttaataa gtcttttttt
    12481 taactcatct ttattttttg tagtaataaa aacagaaaca atcttatcag ccattttttt
    12541 tctggctatt ttaaatcctt gcacatcaat atcaaaaaca actatttttc cattatctaa
    12601 agcattttga gtgtgcttta aagaagtacc ataaaaattt tcatgcactc tagcccattc
    12661 taaaaaatga tcactatcta tacctttttg aaattcttca tgggatataa aatgataatg
    12721 tattccattt ttttcaccct ctcttggttt gcgagttgtt gaagaaatag aaaaataaag
    12781 ctcatcttca aattcatcaa aaagtttttt taaaagagtt gattttccag caccactagg
    12841 acctgaaatc aacaaaacaa aaccttgcaa tttcaatcct ctttaaaact aatgtttata
    12901 tttatattca tattcatacc cttaagagca gcttttaagg tatcatcttt aatacttgaa
    12961 gtgatcgctc ctgctatgct ttggctaagc tcattaacta tctcttcgct attatcatct
    13021 ttagttacat cacttactat aggctcttca tttttttcta agatttcctc tccaagagct
    13081 tcttgtatat cactttcttt caatgtatca aaatcactta tatttaaatt tggcacaacc
    13141 acttcctctt catttgttcc taattcttta tcgtctaaaa ttggttcatc tttaaaatct
    13201 tctaagacct tgctactatt gtcactatca ataccataat caagctcatc aagttgagct
    13261 agttcttctt tgatttgatc ttgagtactc aaatttgaag caaaatcatc tatttcatct
    13321 tgaacatctt cttccacaac aggagcaaac tcctctaaat tttcctctga ttcttcatta
    13381 tattttgctt gacctaaaaa ttcagcatcc tcaggaagat catcaaaatc catttctttt
    13441 tcttgctctt caacctcagg aagatcatca aaatcgctta tattagcttg taattcttta
    13501 ttatcttcta aatcttcatc atttttatca tctagctcat ctaaactagg ctcagtatcc
    13561 aaagctgtat gttcttggct taagtcttct ttttcacttt cgccatcttc taaagttaaa
    13621 tctaaatcaa tttgagtgtc ttcttgagtc tgttctttaa ttgtttcttg ttctaaattg
    13681 tcatgttcta aattttgagt ttctaaagtt ttgtttgaat tatcatcttg agattcgcta
    13741 agctcttctt gcatttctaa tgtatttgtt ttagaatcgt ctaataattc ttgcttttct
    13801 atttcttcat ttttatcatc tagctcatct aaactaggct cagtatccaa agctgtatgt
    13861 tcttggctta agtcttcttt ttcactttcg ccatcttcta aagttaaatc taaatcaatt
    13921 ggagtgtctt cttgagtctg ttctttaatt gtttcttgtt ctaaattgtc atgttctaaa
    13981 ttttgagttt ctaaagtttt gtttgaatta tcatcttgag catcatcatc aaaactcaaa
    14041 tcttccattc cctctgaatt tatatctaaa gaattttcat caggcaaatc atctaaattt
    14101 aaattatcta aatccaagct tatatcagca taaggatttt catcattgct taacattggc
    14161 aaatcaatag atgtatgctt gttcgcatct ttattattaa gtaaatttaa aaaatctgta
    14221 ggtaaaaaag gtttttgtaa aatttgcgca tctatatctt ctacattttg atttcgcggg
    14281 gctaaaaaaa tcaatctatc gcatttttct ttaagaattt ttaaaggtgc tggagtatca
    14341 ctatctacaa caatcacatc ataattaccc aaattttcac tataagcatt aagttcttca
    14401 aaatcataag acattttttt agcactaagg cttacaagtc ttgaaactac agggttttca
    14461 tttaaaagta aaattttcat cactttaatc cttaaaaaat aatcgctatt ttacgataat
    14521 ttcatttatc ctttccttag gagaaaaaaa gagtttgcat atgagtaaaa agttctaaaa
    14581 ttaaattttt aaaatattgc atcataacta gtaaaatagc aatcaaaact acaaaaccta
    14641 gagctatctt tataggatag ccaataacta aaagattaaa ttgtggcatt gttttcatca
    14701 aaagtccaaa aataacatcg gctaaaagtg aaattccaag tataggaaag ctcatagcaa
    14761 aacctatgat gaaaatatta aacataccca tatttaaata atgcattaaa ttctcatgcg
    14821 gataaaatcc acctaaacta atataaccca aagaatgact taaaaacaaa agcattaaat
    14881 gatggccatc aaaagcaaga aaaaacatca aagcaagtaa atttaaaatt tgagatgtga
    14941 taggcatact cgttccagaa cttggatcta atatacttgc catagtaaat cccatagtaa
    15001 aagcaatctg ctcacctgcc atcataataa tagcaaaaat aatttgaagc attaatcctg
    15061 ctatcattcc aaaaatcact tcactaataa gctgtaaaac aaaaaaacta tctaaatgca
    15121 aagattctaa tctagccaaa ggatataaat acatagtcaa aaataaaact atagtacttt
    15181 ttatcaccat aggaatagaa ttatgtgaaa aaaaaggaaa aaaaactata agaccactca
    15241 ttctagcaag aagcaacata aaagttacaa catttttatc acctaaataa ttaacaaatt
    15301 ccattggcgt ttatagtata agttttatca caaaaacttg caagcttgct atcgtgagtt
    15361 acaaaaaata aagctgcatc attttcttta acataggaaa ttaaaagctc gataacattt
    15421 ttagcattat caaaatccaa atttccagtt gcttcatcag caaaaataat ctttggtttt
    15481 ttacaaagca cacgtgcgat actcacacgc tgttgttgtc cgccgctaag ctttcctatt
    15541 ttttgatgta aaagcgtatc aatacctaac ctttttaaaa ttttctcatc taaatcttga
    15601 cccgataaaa cactagcaag ttcgatattt tctaaagccg aaaaaccttt aaaaagataa
    15661 tgtgtctgaa aaataatacc aaaatcataa cggcgaattt ttaatctttc gttttcatct
    15721 atctgataaa gactagaacc tttaaaaaaa acttcacctt tttttggaat caataaagaa
    15781 gaaagtatat gcaaaagagt agatttacca caaccgctac tcccttgaat agcaatgcaa
    15841 tctttggtat ttaaagtaag atttaaaccc tcaaaaagcg gataatcaaa actatggctt
    15901 aaattttccg ctcttaagag ttccattttt aaccgttttt aaagttgtgc agcaacttca
    15961 gccgcaaaat cttcagtttt cttttctaaa ccttcgccaa cttcaaagca aataaattca
    16021 acaattttaa tttttccgcc aaattctttt tctttttcag caattacttg ttctacagtt
    16081 tttttatcat ccattacata aaactgaccc attaaagtaa gtttgctatc gagttgagaa
    16141 ttatcagcta taaaactatt cattttgccc aggataatat tatcccaaat tttttcaggt
    16201 ttaccttgag ctttaagttc ttctttgatt ttttcttcag cttcttttaa aattgcatcg
    16261 cttaattgtt tgcgacttgc aaattgagga attttatgtt caggtttatt tggatcttta
    16321 agtctgcgtc tttcttcatt ttctttttca agttcagcaa ccaaagcttt gtattcattt
    16381 tcaacaaaag tcatatccaa atcttcataa cttaaataac ttggtctcat tgctgcaata
    16441 tgcatacaaa tttgtcttaa taaatctctt gattttgaag ctacttcagc actatcacaa
    16501 gctgcagcga tcacaacacc aacacggcca tttgtatgaa tataaccatt tacaacgccg
    16561 ttagcacctg cttttaaagt tgcaaatctt cttacaacta agttttctcc tatagttgca
    16621 atttgacttt ttaaatattc ttcaaatttt acaccattaa tcgtacttga gtgaagctct
    16681 tccacacttt gcaagctatt gctttgaata tgagctgtag tatcttttgt taaagcgata
    16741 aactgatcat tttttgccac aaaatctgtt tcggaattaa tctcacttac agttgcgctt
    16801 gtaaaatcat cacttacttt tacacttact aaaccttcta cagcaagtct atctgctttt
    16861 ttagcagcct tacctaaacc tttttctctt aaaagttgta ctgctttatc aaaatctcca
    16921 ttagtttcac tcaaagcatt tttacaatcc atcatccccg cgcctgtact ttcgcggagt
    16981 tcttttacca ttgcagcagt aatttcagcc attattcttg ctcctcaccg aagtcttctt
    17041 cgctcatcgc ttcatctaaa acttcttttt tctcttcatc ggtgatttct ttttcttcat
    17101 ttgctaaagc ttcgccatct tgttctctta aagcttttcc ttcattaatc gcttcagcca
    17161 tttcttggca gaaaagttgc actgaacgaa ttgcatcatc atttcctgga ataggataag
    17221 ttaccaagtc aggatcgcag tttgtatcta gtggagctac aacaggaatt cttaatctat
    17281 ttgcttcttg aacagcaatt ttttctttta ctgtgtcaat aacaaaaatc atatcaggtt
    17341 gagttttcat ataacgaatt ccacctaaat aagctaataa tttttctttt tttcttgtaa
    17401 gcattaaagc ttctttttta gttaaaagtt taatacttcc atcttcttcc attttttcaa
    17461 ttacttctaa ttttctaatt gattggcgaa tggtaccaaa atttgtcatc ataccgccaa
    17521 gccatctatg atttacataa ggcataccgc atttttcagc gtattcttta atcgctccac
    17581 ctgcttgttt ttttgtcccg acaaaaagta tagtttttcc ttcggcagca gcgtcacgaa
    17641 cgatattata ggtatatcta aaatatctta aagttttttg taaatcaatt acataaatac
    17701 cttttctctc gccaaaaatg aattttttca tctttggatt ccagcgtctt gtttggtgtc
    17761 caaaatgcac accgcattct aataaatctc tcatactaac catgagtttc tccttataaa
    17821 tttagcttta ttcctccaca tcccttaatt tacacaagct aaaaaggatt gatgcgtgtg
    17881 aaatgaagct aagattttat caaatttaag tttagttttt acttatatat gtagtccttg
    17941 gtaaggctta gattattatt gatttctttt gtgattaaaa attgaaacaa atccacgctt
    18001 ccaacacgaa aagcagaggc acaagaacga aggtataaat cccacattct tataaattct
    18061 tcatcatatt tttcccttac cttgtccaat actttgttaa aattttcatc ccataaatct
    18121 aaagtttttg catagtgcat tcttaaactt tctgctaaaa gaagatgaaa atcccactca
    18181 ctcatagcac ttacaacctc tcttaaagaa ggtaaatatc ctcctggaaa aatatattta
    18241 tctatccaag catttgtttt tccttcaaac atggctaaaa tagaatgtaa aagcatagaa
    18301 cctccaggtt ttaacacttg ttttactttc atgaaataaa gtcctaaatt ctctttgcct
    18361 acatgttcaa acatacccac agaaacaact ttatcaaaat aattttcaaa ttctaaatct
    18421 tgataatttt gaagtcttat ttctatttta tcttcaagac caagttcttt tactctttcc
    18481 ttagcttttt tacactgctc ctctgaaata gtaattccaa caaccttaac tccatacttt
    18541 tgagccgcca taatagaaag ccaaccccag ccacaaccta tatctaaaag cttttctcct
    18601 tcttttaaat caagtttttt aagagtatgc tctattttgt taatttgagc ttcataaaga
    18661 gtattattag gctctttaaa ataagcgcaa gaatagctca tagtatcatc aagccaaagc
    18721 ttataaaaat cattacctat atcataatga cttttgatat ttttactttc ctgtttttgg
    18781 gctattttac tcaagatatc ctctgtattt tttaaaaaac gcttatttga aaaataatac
    18841 aaaactttag ctatttcatc ataatcacct tctatttcta gtttagactc catataatgt
    18901 tttgcaaaaa ctaaactcgt atcactaaat aattttaaaa aaggtatttt ttctttgaaa
    18961 attaaagaaa atttagcagg ctgattaccc acatgaaatt cttcttgatc ccaaaataca
    19021 attctaaaat ttccataatt ccattttgaa agaataaatt taatcatttg tttttcaagc
    19081 atgacatact ccaactaata aaaattatta tttgatagta tctcttaatt atgtttaaaa
    19141 tttgataaaa ttgaagaaaa gatagaattt ttgccacaga tataaaatag tggcaaaaat
    19201 tttataatac taatgtaatt tagaccaaac agaacgcttc caacctatag caaaaatact
    19261 taaaattaca aagaatatca ttacataaat tcctgtagtt tttctttctt cttttttgct
    19321 atcacccact tgatcaatat aagatacaac cttagcctgt gcagcttctg ttaaacctac
    19381 tcttggcata gcggttcctg gaagaagttt ttgagtatta ttaataaaat catgtaaata
    19441 ttgctcacca cgagatctta tcatcataga aagatcaggt ggaacagaac ctaaataagt
    19501 ttttaaatca ttttgatttg atggagtaaa aaagctatcg tatttcatat catgacaacg
    19561 tccgcaagcc tcaataaaag ttgctttatc tttagcaaat tttatatctt tttccattaa
    19621 agctgctttt tgagcactat tttccatttt agcatatttt gcctcaacat ctttcttaat
    19681 agtagcatct tcattggctt caaatttaac actcacatct ttaagataag caattacatt
    19741 ggctatattt gcatttgtag cttcttcact ttctcctgaa gtatctttat tgtaagctgt
    19801 cataataaaa gcatcgccaa atttatgatc tacttttaaa gcaagcgcag gatgcataat
    19861 caaagctgct aaaaattttt catcaaaaat agcaccagct gcactaagat caggcggtat
    19921 tactcccata gaagaatcag taatattagc tgctattcca tcttctttta caccatgaca
    19981 tgcaaaacag ttattttcaa aaaattcttt accttttttt gcatcaccct tagcaaaatc
    20041 gatttttgca acatctgccc aaagtgtttc aaccttgctt aattcttctt ttgctttttc
    20101 aagttctttg tttgcactct ctattctttt agcatctcct gaagcttgtg catcttttag
    20161 agctaattct ttagcttcaa ctataccttt tgcaaaagta gtatcttcaa cagcaaaatc
    20221 aaaatttgca ggagcaacat gaggcttcat cactgaatga gcataaggct ctacccccca
    20281 atatacaagt gcagtaaaaa ctactacaac taaaaatatt tttatttctc tcattgttta
    20341 gctccttttc tctccataat agtaataacc ggtaaaacta caataagtaa aagtaaaaat
    20401 actatagaag cgtaaaatcc tacccaagca tttacacctg ttggaggtaa ttttccataa
    20461 actgttaaaa caattaaatc gataagcaat atccaaaacc aaatgaaaaa taaaggtctt
    20521 tcatgagctg gttttaccac atcacttcta tcaagccaag gaagcaagaa gaaaatcact
    20581 tgagcaatac caaatgcagc caaacctata tcaaaagctt taatacctgc aatatcaaag
    20641 aaaaatcctc ttaaaacttc ataactccat aagaaatacc actcaggata aatatgagct
    20701 ggtgttttaa gcgcattagc tggatcaaaa ttaattggat ccattgcaaa ttcaaattta
    20761 aaacagacca aataaaagaa gaaaatcata aaaaagctta tatacataaa atcttttgat
    20821 aaaaatcctg gccaaaaagg aatcacttta gaaccctttg tgtcacctgc catgtatttt
    20881 tcagcctcta aatcaaagtc aagttcttca gaaatttcat tattaacatg aggaattctt
    20941 aaagaataga agtgaaatgc tataatagca atgataacta taggaagcaa gcacacatga
    21001 agcataaaaa atcttgttaa agttggatca gaaaccgcat aatctccacg aatccaaatc
    21061 acaagctcag ggccaataaa tggtatccct ccaaaaagat tagtgattac ttgagctgcc
    21121 caataactca tttgtcccca aggaagcata tacccactaa aagcttcagc agaaaataca
    21181 acaaacaaaa gcataccgct aacccaaatc atctcacgac cttttttata agaaccgtaa
    21241 taaattcctg ttagcatatg tatgtatata atcaaaaata caacagaagc ggcaacacca
    21301 tgcatgtgac gccaaagcca tccatagtcc acctcttgca taatagtctt attcacacta
    21361 tcaaaagcaa gtgcagtatc tggtttataa tacatcacaa gtaaaagtcc tgtaacaaaa
    21421 agcactgcaa aaagagtggt taaaataacc cccattgccc aaagaaagtt aatttgcttt
    21481 ggtatccaat attttaccat taaaacatca agcagtttat gtaccgcaag tctttgatca
    21541 agccaatcta caagaccatt agcttttcta atttgtgcca tcttaagcct ccgctatcat
    21601 ttttttatat tcaggaccct cttcacctaa aacaagcttg gttccatcaa ttttaaaagg
    21661 aggaatttca agaggctttg gaggaggtcc aaagacattt tttccacttg tgtcaaattc
    21721 tccaccatga caggcgcatt taaacaattg ctcacttggt tggtaagcag gtatacaacc
    21781 caaatgcgta caaagtccta taaccacagt ataagctgcg ttatctacca caacatcacg
    21841 tttttcatct tttggcatac tcgcatcttt ttttaatata aaaataggct ttttacgcca
    21901 ttctatagtt ctaagctctc catcttgcat tcctgataaa tctactgtag taaaacctgc
    21961 agctttaaca cttggaagcg gatcccaagt ttttttcatc gcaacaagtg agaaaacacc
    22021 gcctacagca gctacgcttc caaatgcaaa gcccataaag cttcgtctac tctcagatgt
    22081 agccataact tgctcctttc gattttattt tttaaccaag ttaaaagttt atcgaaatta
    22141 aaataaattt tttctttgtt taacaagttt tgatatttag acaataagag caaaaagaga
    22201 aaaaacaagc acaggtaaag ttatcaaaaa gccaaattta caatattgcc aaaaagaaat
    22261 attaatgcct tttctagcca aaactccaag ccaaagcaaa gttgctaaag aacctattgg
    22321 cgtaagtttt ggacctatat ttacacctaa aagatgtgca taaatcatca aagaatcaaa
    22381 agaaaaattc tcaaaatatt cttttaatgc caaatctccg attaaaacca taggcaaatt
    22441 attaaacaca gaagatccaa aagctgaaat caaagccaca ccaaaaattc cactcttatc
    22501 ttgcatcaaa aaagcatagc ttttaaccaa aatttcactc acacctattt tatgtaaagc
    22561 aaaaaccacc atataaagcc caaaactaaa aagcaaaact ccataaggtg cttcaaaaag
    22621 aattttaata ctttttttac cttgaatttt taaaataata agccaaaaaa ttcccgccca
    22681 aagcaaagca aaaaaactta ttttaatatt aaaaatttca cctataaaaa aactgataac
    22741 aaaaagaaat aaaaatacta tgcaaagaaa aaacaatttc aatgaaattt gctctttttt
    22801 gattaattta aattcaagcc ttttaggtaa aactctcaca taaagcacaa aaaccgtaac
    22861 tatagtagaa agcaaaacaa aaaaatttgg caaaaacata tttttagcaa attctaaaaa
    22921 ttctatctta aaataatttg ctgtgatgat attggttaaa tttgaaataa ccaaagcgtt
    22981 tgaacttgca tcacataaaa aagaaaggct aagtaaaaaa gaacttaaaa taaaagcatg
    23041 atttttacaa tctttaagag ttgaaaataa agctataata ataggtgtaa tgattaaaat
    23101 cgctccatcg ttagcaaaaa atgcagaaag aaaaaataca aaaatcaaca aaaataacat
    23161 catttttttt gtactgatat aaattttttc ttgatttttc tctctagaaa aatacaaaat
    23221 tttactcgca ataaaatcaa aaaatcccaa agcttccaag ctaaaagaaa ggataatcaa
    23281 cccaaccaaa gttaaagaac tatcccaaac caaagaaaaa acaaaaaaag catctttaaa
    23341 atctaccaat tgaaaaataa aaacaaaaaa agcccccaag ctagaaaata cccaaatagg
    23401 taaattccat ggacgccaaa aaagtaaaac taaagtagat aaaaaaataa aaaaagcaag
    23461 catttaagct tttttctttt gcattttgat ataaatttgc aaaatatcca acgctgcagg
    23521 agtgattcca ctgatttgac ttgcagcaaa aatggttgga ggtttatgat gattaagctt
    23581 ttctacaacc tcattactca aaccacttac acttttaaaa tcaaaatttt caggaatttt
    23641 aagctcacta agatttttca ttttttctac ttgagctttt tgcatactaa tgtaatgata
    23701 atactttgcc tcatttaaaa tctctcttaa ggagtaatga tccatggttt caaatatagg
    23761 gtcaagtttt tttaattttt ctatatcaaa acttgctctt gcaacaattt tttgaagatt
    23821 gactatagaa gaaattttat cttctcctaa actctctaaa aaagcattat tttggttgtt
    23881 aggcgtaaat tctttagaaa gtaaaaattc aagtcctttt tgaagattgt ttgcgatatt
    23941 ttgtatataa gtaaaatctt gctcgcttaa aagccctaaa tcatagccat attttccaag
    24001 tctaagtata gcattttctt cccttaaaag cagtctaaat tccgctcttg aagtaaacat
    24061 tctataaggt tcttttgtac cttttattac taaatcatcg attaaaactc ctatataagc
    24121 ttcatcacgc cttaaaatca aaggctcttt catatctatg cttaaacttg cattgattcc
    24181 tgccataaag ccttgtgctg cagcctcttc ataacctgta gttccattaa tctgtcctgc
    24241 acaataaaga tttttaatct ttttaagttc taaagtatgc ttaagttcag ttggctctat
    24301 ataatcatat tctatagcat aaccaaaacg ggttatttta gcattttcaa aaccttttac
    24361 agaacgcaac atttgagttt gtacttcata aggtaaagaa gtagaaaaac cgttaatata
    24421 atactccgtc gcatcgatag tttgaggctc tataaaaaga tgatgacttt ctttgtcgct
    24481 aaaacgattg atcttatctt ctatagaagg acaatacctt ggccccacac cttcaatctg
    24541 tcccgtaaaa agtggagcac gataaaaatt attcttaata atctcatgtg tagttgtatt
    24601 agtgcgtgca atataacaag gaagttgagt aggattaaaa tttcttgaac gaaaactaaa
    24661 agctttagga tttacatcac catcttgaat ttcaagcaca ctaaaatcaa tgctttttgc
    24721 atctactctt gggcaagttc ctgtttttaa acgtcccatt tttaaaccca aagtttgcag
    24781 ataatttcct aaatttaccg aagcaagctc ccctaccctt cctgcttgaa gtttattttc
    24841 acctacgtga ataagtccat ttaaaaaagt tcctgttgtt aggatgactt ttttggcaaa
    24901 atatatattt tctaaatttg tttttacgcc tttaacttca tcattttcta cgattaaaac
    24961 actcgcttgt tcttgagaaa tttctaaatt tggaagtttt aaaagtttat tacgtgcaat
    25021 gatacggtat ttatccatat caatttgtgc cctacttcct tgaacggcta cacccttact
    25081 ttcatttaaa atgcgaaatt gtatccctgc ttcatcggtg atttcaccca taagaccacc
    25141 catggcatca agttctttta ccaaatgccc tttagcaagt ccacctatgg ctggattaca
    25201 acttgccgct cctatttgct caatcaatgt agttaaaagt aaggtttttt tacccattct
    25261 agcagcagca gcacttgctt caacacctgc atgtccacca cctataacaa tgacatcaaa
    25321 catattttgc cttgaaaaat gtgaattttt aaaagaaaga ttatataata tttagactta
    25381 aaacaaactc gttttaagtc taacaaaaat ttatttagct tcttgaagag aaaagattag
    25441 ctcattataa gttttatctg catctttgca gaaattttta agcatctcaa cacccttatt
    25501 taagccttgt tgctgttctg ctcttaaaag atcgctataa agactttcta ttgtagaaat
    25561 agcgctttta tttggcatac gacgaacgga ataataacct atgatattat tattaacatc
    25621 tattgatggg gttacatttg caaaaaccca atagtaattg ttatctttgg ttttattttt
    25681 tacgtaagca aaaatttctt tgccttcttt catataatcc cataaatatt taaaaacagt
    25741 ttttggcatc tcttcatgtc ttactatgtt atgaggttta tttaaaactt cacccatggt
    25801 ataacctgca tactttaaaa aatcatcatt tgcataaact attttacctt ttaaatctgt
    25861 tttagaagta attaaactat cttcttgtaa aaaaatttct cttgacattt tcccaccctc
    25921 ttaatttata tttttaattt tgctaagatt tcagcacttc tttgctctag tgatttaata
    25981 tcatttacaa tcgcatcata agctttttga tcgatataat cttgacttga ttcttctatt
    26041 gcttttttag cgttatcttt tataaattct ttagctaaat ttaactcagt ttcagaacta
    26101 agctcattaa taacaccttg agctctctca tcttgacaaa gattagaaat tggatctaca
    26161 ctttcaagat tgaaattttg agccccattt aaatttaaat atatatttga tttataaaga
    26221 atatgatcga ttttaaccac agacaaaatc aatctctttg caaaggatcc aaaattaaca
    26281 ccaagagcac tactattttc ttctagacgt ttaaaagctt gagaaaattt attaattctt
    26341 tcttcagatt cactaacaat gttaaaaact tgctcactgc cactttggat atttacaaaa
    26401 tcttgttgca tagtctgaat tgcaatagaa atttcgcttg tagatctttg agttctttct
    26461 gctaactttc taacttcatc agccacaacc gcaaagcccc taccatgctc tcctgcacgc
    26521 gcagcttcaa tagcagcatt taaagctaga agattggttt gatcggctat atcgcgtatt
    26581 acttcaacca ctgaagtgat attttgtgaa ttagccacaa aagtttgtac tgtctccttg
    26641 ctcgaattta caacatccat taaagaaccc atagcacttt gaagagaatc cacctctgaa
    26701 ccattttctg tagctgtatg agaaatggca tccactgtat catatacatt cttcatcatg
    26761 ctaatatctt gatttaatga gctagaaatt tgagacatgt ctttattttg atttccaagg
    26821 cttaaatcca ttaaagttct tgataaagca tttttaaaag tagatcttgc tgtcacttct
    26881 atgtttgcta aagctttatt tataaattcg atattatgag caaaaattcc ttttaaacct
    26941 tcaggcaaag ccttgcgata aaattcacct ttttgagaac aagaaataga agtattaatt
    27001 tcccttaagt aagcttctag cccatcaata gtattgttaa gattatctgc tatttcggct
    27061 aattttttgc tttttgtttt tacatagata attctattgt caaaatttcc ttcttttaac
    27121 tctctacaaa gaaccaaaag tttatctatc attatttgct catctttgtg ttgtctaagc
    27181 aaataaatca ttaaaacagc gattaaaaca aaaattatcg ctccaacaaa aatatgaata
    27241 aaaatgacac ctaaaacacc gataacactt agaaaaatag ttgataataa tccatttttc
    27301 accataaatt tacccctttt attgaaaatt ttttgaaatc ataaatcaaa acaatacttt
    27361 aataatatat tactttaatt tttaggcgaa aattatacaa taaaaaagat taaatatatc
    27421 ttatttagtt attttcttgt aagttaaaaa taagttcatt ataagtcatt ttataagaac
    27481 ttacaatatc cattaaagct gaaactccag cattaatgcc tgatttttgc tctttttcaa
    27541 gtaaaatttt ataaacttct tcaattatag aaagagattt tctattgggt gcacgacgaa
    27601 cagaataata attgatgata tctccattag catcaaatga agcacttaca tttgcaaaaa
    27661 cccagtaaaa attaccatct ttggatttat ttttcacaaa tgcaaaaatt tcatctcctt
    27721 tttgaatata atcccaaaga catttaaata cagtgcgtgg catatcttca tgtcttacta
    27781 tattatgaga tttatataaa agctcatcga ctttataacc tgcgtatttt aaaaagtcat
    27841 tattggcata aatgatattc cccttaagat ctgttttaga agtaattaaa gcattttcag
    27901 acaaaactat ttctttcata atttaaaaca tcc
//
LOCUS       DARGBD010000013        27417 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.013, whole genome shotgun sequence.
ACCESSION   DARGBD010000013 DARGBD010000000
VERSION     DARGBD010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27417
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.013"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..327)
                     /locus_tag="SFZ04_000460"
     CDS             complement(<1..327)
                     /locus_tag="SFZ04_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8064765.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKSKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSIQNAQICILNFFKSGFISKQDLLKALKILEKISK
                     NTEIFDF"
     gene            complement(355..1080)
                     /locus_tag="SFZ04_000461"
     CDS             complement(355..1080)
                     /locus_tag="SFZ04_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HEG8064766.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRKQLVAQRNK"
     gene            complement(1073..3064)
                     /locus_tag="SFZ04_000462"
     CDS             complement(1073..3064)
                     /locus_tag="SFZ04_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HEG8064767.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLEG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            complement(3048..3830)
                     /locus_tag="SFZ04_000463"
     CDS             complement(3048..3830)
                     /locus_tag="SFZ04_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HEG8064768.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNAKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            complement(3900..4715)
                     /locus_tag="SFZ04_000464"
     CDS             complement(3900..4715)
                     /locus_tag="SFZ04_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEG8064769.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            4805..5704
                     /locus_tag="SFZ04_000465"
     CDS             4805..5704
                     /locus_tag="SFZ04_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HEG8064770.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            complement(5779..6567)
                     /locus_tag="SFZ04_000466"
     CDS             complement(5779..6567)
                     /locus_tag="SFZ04_000466"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEG8064771.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6564..7400)
                     /locus_tag="SFZ04_000467"
     CDS             complement(6564..7400)
                     /locus_tag="SFZ04_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEG8064772.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSLNNNDSTNFAMPDQEVPAEPTATTSENTTPQASAPKQEVKQTAKPKEE
                     AKKQIAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            complement(7414..7959)
                     /locus_tag="SFZ04_000468"
     CDS             complement(7414..7959)
                     /locus_tag="SFZ04_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HEG8064773.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            complement(7956..9200)
                     /locus_tag="SFZ04_000469"
     CDS             complement(7956..9200)
                     /locus_tag="SFZ04_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEG8064774.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            complement(9197..10702)
                     /gene="lysS"
                     /locus_tag="SFZ04_000470"
     CDS             complement(9197..10702)
                     /gene="lysS"
                     /locus_tag="SFZ04_000470"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEG8064775.1"
                     /translation="MFDNILEQQRIEKAKELKKLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMINFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            complement(10703..11176)
                     /locus_tag="SFZ04_000471"
     CDS             complement(10703..11176)
                     /locus_tag="SFZ04_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEG8064776.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDIHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            complement(11178..11741)
                     /locus_tag="SFZ04_000472"
     CDS             complement(11178..11741)
                     /locus_tag="SFZ04_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEG8064777.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIVCLLVGNFLSRLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            complement(11809..12093)
                     /gene="gatC"
                     /locus_tag="SFZ04_000473"
     CDS             complement(11809..12093)
                     /gene="gatC"
                     /locus_tag="SFZ04_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEG8064778.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            12237..12815
                     /locus_tag="SFZ04_000474"
     CDS             12237..12815
                     /locus_tag="SFZ04_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064779.1"
                     /translation="MGLKDNLKAVKNELNTEEQFIENFIKGERFIRKYKFYISAVVII
                     LVAWFAGNFIISKINDYKTKEANEIYANLIQDPSNKNLLEQLKNKNTNLYTIFLLKEN
                     INDLNNTAFQNELKQIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNK
                     IEEANVLLSQIKENSSLNQIAKNLKHYQGITQ"
     gene            12812..13810
                     /locus_tag="SFZ04_000475"
     CDS             12812..13810
                     /locus_tag="SFZ04_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064780.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGIASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNTQVFKLSEAVDKISFMGNGKFYYGDKILDLL"
     gene            13807..14097
                     /locus_tag="SFZ04_000476"
     CDS             13807..14097
                     /locus_tag="SFZ04_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HEG8064781.1"
                     /translation="MIKILEQTIKSLKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            14084..14713
                     /locus_tag="SFZ04_000477"
     CDS             14084..14713
                     /locus_tag="SFZ04_000477"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEG8064782.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKKFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            14831..16177
                     /locus_tag="SFZ04_000478"
     CDS             14831..16177
                     /locus_tag="SFZ04_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEG8064783.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            16226..17668
                     /gene="pyk"
                     /locus_tag="SFZ04_000479"
     CDS             16226..17668
                     /gene="pyk"
                     /locus_tag="SFZ04_000479"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEG8064784.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVENIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            17766..18401
                     /locus_tag="SFZ04_000480"
     CDS             17766..18401
                     /locus_tag="SFZ04_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064785.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDAAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(18432..20894)
                     /gene="pflB"
                     /locus_tag="SFZ04_000481"
     CDS             complement(18432..20894)
                     /gene="pflB"
                     /locus_tag="SFZ04_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HEG8064786.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DVGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(20904..22139)
                     /gene="serS"
                     /locus_tag="SFZ04_000482"
     CDS             complement(20904..22139)
                     /gene="serS"
                     /locus_tag="SFZ04_000482"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEG8064787.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKIA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            complement(22150..23109)
                     /gene="trpS"
                     /locus_tag="SFZ04_000483"
     CDS             complement(22150..23109)
                     /gene="trpS"
                     /locus_tag="SFZ04_000483"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEG8064788.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKI
                     NNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(23106..23603)
                     /locus_tag="SFZ04_000484"
     CDS             complement(23106..23603)
                     /locus_tag="SFZ04_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEG8064789.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKTCIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKIYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(23590..24972)
                     /gene="der"
                     /locus_tag="SFZ04_000485"
     CDS             complement(23590..24972)
                     /gene="der"
                     /locus_tag="SFZ04_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEG8064790.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGIKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNILIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            25073..26005
                     /locus_tag="SFZ04_000486"
     CDS             25073..26005
                     /locus_tag="SFZ04_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8064791.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGHFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLAAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            26002..26817
                     /gene="kdsA"
                     /locus_tag="SFZ04_000487"
     CDS             26002..26817
                     /gene="kdsA"
                     /locus_tag="SFZ04_000487"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEG8064792.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQKNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVMFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            26814..27278
                     /locus_tag="SFZ04_000488"
     CDS             26814..27278
                     /locus_tag="SFZ04_000488"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEG8064793.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            27278..>27417
                     /locus_tag="SFZ04_000489"
     CDS             27278..>27417
                     /locus_tag="SFZ04_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N utilization substance protein B"
                     /protein_id="HEG8064794.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TL"
BASE COUNT         9546 a         4818 c         3671 g         9382 t
ORIGIN      
        1 aaaatcaaat atttcagtat tttttgaaat tttttctaaa atttttagag ccttaagcaa
       61 atcttgcttt gaaataaaac ctgatttaaa aaaatttaaa atacaaattt gagcattttg
      121 tatactaaaa atatccactc ttaaatcaat ttttttgcaa agctcttgaa attcttttaa
      181 gagaaaatat ctttcataat tgtctttatt gacacttaaa ataatcgcac actcggccgt
      241 atcaagtttg cttttatctt gaaatttagc atcaaaattt aaaaattgaa gttcattttg
      301 ccaaattttt tggaataatt ctttcataat cttcccctta aaaaggggaa agatttattt
      361 gtttctttga gcgacaagtt gttttctcat ataagcgatt ttactttgca aaggtaattc
      421 tttagggcaa ttatcttcac aagcaagcaa tgacatacaa ccaaaaacac catcatcatc
      481 gcctactaat tcataaaaat cttccacact tctatggtca tgcggatctt gtaaatatct
      541 agctgttctt aaaagtcctg tagcagctat gaaatttggg cgcataagtt tagttgcaca
      601 agaagctaca caaattccac actctataca acgatcaagt tcaaaagttt catccgcaac
      661 ttctggctca atgcgttctt caagtttaga aatatcagtt tctttttcat tatgcaccca
      721 gctttcaaca cgcttacaca tgtcttcaaa ccactcgcct gtattcacgc ttaaatcttt
      781 aatatgccta aatgcaggca taggcataag ctctatcact ccatcaggat aatctttagt
      841 taaagtttta caagcaagtt ttggcactcc attaatcatc attgcacaag atccgcaaat
      901 ccctgcacga caaacaaagt caaaactcag atccgcatcc attttttcac ggatcaaagt
      961 caaacataca aaaaccgtca taaaaggagt ttcttcaagc tcataagtca caaaatgtgg
     1021 tttagaaatt ttgcttaaag gattatattt aaatgccttt attgtcaatt ttctactcat
     1081 aatcaactcc tattctttgg tttggtgctt tatatttagc ttgtaattca taaggcatta
     1141 aagcgttttg aatttcataa cgacctttgc cttcagcttc cattttttca cgtattgcat
     1201 ccacttcagc ttggcgtttt tcacttaaag gattttctat aatatttcct ttagctccat
     1261 atccacggaa tgctggtgga atttccattt tcataatatc aagctcttca tattctatgc
     1321 gtggtaatgt ttcgccttct acccaaaaag tattggttct tttcatccaa tttaaatcat
     1381 ctctttttgg ataatcttcc ctataatgcg ccccacgact ttctgttctt aaaagcgctc
     1441 cataagctac acaaagtgct atttttaaca ttcttggtac tctatacgct tcttcaagct
     1501 ctggatttgc acaatcaagc tctttacaat gcactttaac atcttgagaa tctttataaa
     1561 gtttttcaag ttcatctact gcttctttca aaccttcacc tgttctaaag atagctacct
     1621 tatcccacat gatttctttc attctatttt tgatttcaaa aacattatgt ttaccttctt
     1681 tatctactaa agattttaaa tattgatact ctttagttaa gaagtctttt actacatttg
     1741 tgtcaattac ttcaccatta tttttacaat aatctgcaaa ataatctccc actatcatac
     1801 ctgctacaac agtttcagca catgaatttc cacctaaacg attaaatccg tgcatatccc
     1861 agcaagctgc ttctccacaa gcaaaaagtc cttctagcca ttgactttca cctgttggtt
     1921 tagttctaat tccacccata gaataatgct gcattggaag aactggcgcc caaccttttg
     1981 gaccttcatc tgctggatca ataccattga aagttttgca aatatcttgt acatcgcgga
     2041 gatttttttc cacatgagca cgacccaata tagaaatatc aagccataaa tgatccccat
     2101 aagggctttt tacacctttg cctttacgaa tatgttccat cattctacga cttaccacat
     2161 cacggcttgc aagttctttt ttctctggtt cataatcagg cataaaacga tatccatcca
     2221 cgtcacgtaa aattccgcca tcgccacgac aaccttcagt aagcaaaata ccgcttggta
     2281 caataggagt tggatgaaat tgcactgctt ccatatttga aagtctgcaa agccctgttt
     2341 caagagcgat ggctgcaccc gttccttcgc aaattaccgc atttgtagtt tgtttataaa
     2401 ttctaccata gccccctgtt gctatcatgg ttcctcttgc aatataagca atgagttgtc
     2461 cattagttaa atctctagcg atcacaccta agcatttttt accatcatgg ataattctta
     2521 ctgcttccat tctatcaatg atttttactt gatgtttaat agcttcattt gctacaccat
     2581 aaagcataca atgccctgtt gcatctgcga tatagcaagt tctccatttt ttagttccac
     2641 caaaatctct agcattaata agcccgtgcg cttcttcttt ttcttcaatc acagtttttt
     2701 gtgcattgat tacaacagtt cttggacctt tagtaactct agtccaaggc acaccccaag
     2761 ccgcaagttc acgcactgct tttggtgcag tttgagcaaa cattcttgct acttcttgat
     2821 cacagcccca atcacttccc tttactgtat ctgcaaagtg aagatcttca ttatcaccct
     2881 caccttttgc cccatttgct aaacttgcct gcatacctcc ttgcaccgct gcagagtgag
     2941 aacgcttcac tggacaaata cttaaaagtg ttacactttg gccactcttt gctacttcaa
     3001 tagccgctct aagacctgct aatcctccgc ctattactaa agcatcacta tattgtatat
     3061 tcataatttg ctccattgta gttttttatc atcgcagtag tttgggtttg attttggtag
     3121 ttttcataac ctatttttat aaatgctgca agacttaata cacctaaaac taggaagaaa
     3181 atgctgatta tccatttagc agttttaagc tttttacgac tttcttttgc attttttcct
     3241 tcaaaccaac cccatttaac acaaagtctg taaagaccta tacttccgtg aagctcaaca
     3301 cacactaaaa gaacagcata aaaaagccac ataaaatgac ttacaaccct atctcctgac
     3361 atatcaccac taattttatc tgcattggtt acaataaaaa taagatgagc agaacctaag
     3421 aaaaacataa taaaacctgt aaaagcttga acccaccata acgaagtatc gctgtgattc
     3481 atttttttac tgtgtgttct tagtatttga tactggcgat aattaatagg aaattttctc
     3541 attgcaagta aagcatgaac gaaaaaaacc actaaaacac aggcggctaa aaatgaagta
     3601 agataactca taacaggatt atcataaaca aattttaatt ctaaaaaatg gaccacagaa
     3661 ttaaaaaaat cctcactgac taaaattgta gaaacaaaaa gcatatgcac ccacataaaa
     3721 agacctaaaa aaagccctga agcactttgg ataaagtcta atttcgcagg cattttactt
     3781 tttttgccct caatgctctt acccaaataa ccttcgataa gctcacgcat ctttactcct
     3841 ttgtaaaaag aaattaaaaa aaatccattt cattatatta caaaagtctt taagatagat
     3901 taaatattta cttttttaaa ctttatacaa atataaacta acaaagctgt tataaacatt
     3961 ataaaactta aaatttgccc catactcata ccccataaaa caaaacctat accaaaatca
     4021 ggctcgcgat aaaattcaca tataaatctt gccaatgaat aagcaccagc ataaacaaga
     4081 atcaattccc cttgaaaact ttgcttaaat cttgctaaat aaactataat aaaaacaaca
     4141 ataccttcta aaaatgcttc ataaagttgc gatggatgac gcaatactcc atcaacataa
     4201 attccccaag gcacatttgt aatgcgacca aaaagctctt gatttaaaaa atttcctata
     4261 cgaccaaaaa cataagccaa tggaacactt aaagcgacca aatcaagaaa aatccaagga
     4321 tttgttttat attttttgca aaacaataaa gtagctatca aaaatcctat aattgctcca
     4381 tgataactca tacctcgaat acctacaaat tcaccattaa tataaggatt aaaaatttgc
     4441 caaggatgag taatataata catagtattt gcatcataaa tcaaaatata tccaagcctt
     4501 gcacctaaaa taacccctat ttcaacccat ataaaataac tatccaaatg tttttcatta
     4561 atgtctagtt gaaattttct tacaaaaaat ttagccaaaa gcaaagccaa aagcaaagct
     4621 ataacataca taatgccata ccaatgcacc tttaaaccaa agatgctaaa agctataaca
     4681 ttaaaatttg aataaatatg ctgccaaaat tccatatatc tttcctaatt ttcttttata
     4741 aaaatataac aaaaaaactt taacttgcta taattaacac aaacacatta aataaaggta
     4801 aaaaatgaaa aaatatattt tacttgctag tagtatgtta attttagcag cttgtggggg
     4861 tacaagcagt aattttgtca atgtttctat gccaaatttt aaaccccaag ttccaacaaa
     4921 ggttgaacct attgattctg gagtaagcat tgctcttgag cctattaata tagaacaaaa
     4981 taacaattat tctgattatt ttgaaaattc agtgcttaaa attcgcatag aaaaagaaat
     5041 tgatctttta aaacaaaatt tagaagagca gatcaaaacc atcgctcaac taaaaggcta
     5101 taaaatagtt actactaatc cagactacac tcttaaaagt tcaatcagta tttatacaga
     5161 agaaaaaaat gcacaaaaaa caagcaattt tatgagtgga gattatgtaa aatccaattt
     5221 aggtataaat tttaaaggta aaatagattt tatagatgca cacaatccac aaaattcaac
     5281 caatctttca agtagcacca aactggattc tttagttgcg cttaactatc ctattaaaaa
     5341 tgatgatgga gttaatatgt ttaaaactac tatctctacc gtaccaactc aactcaataa
     5401 aggtttagag caacctgctt ttgaaattga taaaagtttt ttagcttttt ataaaaatac
     5461 attaaataca ctttataaca atctaccaaa agcaacagac ataggcaaaa ctatacctaa
     5521 tacaaacagt ggttttaata gttttgatgg cgatgctacc tttgaagaaa gcttacctca
     5581 aacaaattct aatcaaaata atacaattga aaacacgcct acacaaaata ttcctacaaa
     5641 tccatcttca acaaatcaaa ataatcaaag taaaaatcaa gatggggtag aaatatttga
     5701 atgataaaac ttgtgggaaa attaaacttt ctcacacaaa aaataagatt ttcttataca
     5761 agaaaaataa ctatcattct actttaaaat caatgcctgt tgcattgcat tttttatcat
     5821 ctctctttta tcttgtattt caaaaaaaag ttcaaaagca aaaactcctt gccataaaag
     5881 catatcaagt ccatctttaa tttttaaatg atactcttta cacaatctat aaaaaggtgt
     5941 ttctctgcca taaattacct caaaagcaaa tttagcttta ggtaaaattc tatctaaaag
     6001 ctctctatca caaggtaaat tttcatcttt taatccagca gaagttgaat ttataaccaa
     6061 atcaaagtca aaatcttgca agtttttata aagataagtt ggataagcta aaaaatcttt
     6121 aaatctttct ttactacgat tagctatata cacttctacg cctttttgtt ttaatgcata
     6181 agcaagcgcc aaagctgtac ctccagcacc caaaatcaaa gcttttttta tattatcaaa
     6241 atccttaata gcttctaaaa aacctaaagc atcagtatta taagcgtaaa ttttatcttc
     6301 ttttaagcat aaagtatttg ctgagccaat atttctagca aaatcatcct tcacatcagc
     6361 aatatctaaa gctttttcct taaaaggcaa agtaatatta gctccactaa gtcctaattt
     6421 aaaaaaatct tctcttaaac agttagcatt tcttaaatga tagcgtgtat aaatgctatc
     6481 aagccctaag gctttaatag cattattatg cattctaggc gatttagagt gagaaatagg
     6541 atcgcctata actgctaaaa atttcatttt aaagtaaaag aaaaagcatc ttttgcaata
     6601 tccttacgga ttttagcaag ttctgctgca atatctgcct tttcaaatgg tcctattaaa
     6661 accttggtaa tttctttacc tccaactgta gttttataaa gtttataatc ataacctttt
     6721 tgctttacag aagcaagttc ttttgatttt tgatccaaat tacttactga gaaaatttgc
     6781 acataaatac ccgatgccaa accacttgga tgtacaggtt tagcatcaac atttttaaat
     6841 aaatcatttg cattttgttc ttttttaggg gtttgttttg cactttcttt ttcttttttt
     6901 acagctattt gtttttttgc ttcttcttta ggttttgcag tttgttttac ttcttgttta
     6961 ggagcacttg cttgtggagt ggtattttct gaagtagttg ctgttggttc tgctggaact
     7021 tcttgatcag gcatagcaaa atttgtgcta tcattgttat ttaaactaga ggttgttgta
     7081 ttttgagttg tattttgttc atcttgaaat tgttttctta atgcctcaaa ttgatcttct
     7141 gctgaagtat tatctgtaat tggcatactt tcaaaagaag tatcattgtt attgtcttga
     7201 gttgctatag gttcacttgg caatacactt tgattttgcg tattttcatc accactacca
     7261 ttaataagct tcataactat catgatagct aaaaacaaaa taactaaagc aataactcgt
     7321 aaaagaattt tttttacttt ttcactttta ttactttttt ctaaaataat atcatcaaat
     7381 tcattttttt gattttccat aatttgtcct ttcttacata tgcttagacc aagaacttcc
     7441 tcgttctttt tgataaacct cataaggcaa tattaaaata ttaaattccc taggtacatc
     7501 catgctagga aacaccttcc attctactgg cattttactt gcaaacatca ttgaaagttt
     7561 agacgctaaa gaataacctt cgtttaacgc cgtgtgtcct ttgtgaatat aaagatgtaa
     7621 atgtcctgga gttttagtct tataggctgt gaaatttata aaaccttctt ctcttaaaat
     7681 aagttgtgca cggtgataaa atctttcagc attaaaacca ttataatcaa agacaatatt
     7741 ttctacttta ttatcttttg ttattaaatc atgagcgaca acaatttttt tagcagcgtg
     7801 ttctctcatg acatttaaat ttaaaggagc atcaactctt tcaaatttat caaaaaataa
     7861 gcgacctcta tgtgtaattt tatttacaat tttatcgcgt cttatataat aatgatcgcc
     7921 aattatttta attagcgaca tatccattgg tgaaatcaaa acatagccct ttcataaata
     7981 ataaaattac ttgcaagttt ttttaattct tgtttaatat tctcttgtaa tttttcatta
     8041 ttaatatcat ctaaaatatc tgcaatataa tttgacacaa tttccatttc tttttcttta
     8101 aaacctctgg cagtaagggc tggagttcca agtcttaatc cacttgtgat aaaaggactt
     8161 ctaatctctc ctggaacggt atttttattt gcagtaatac ctgcatttcc aagagctaaa
     8221 tctgcatctt ttccactaaa ttcacgatct aaaaaactca ttaaaacaag gtgattatcc
     8281 gttccatcgc taacaagttt aaattttcta tccattaaaa cattagctaa aacttgagca
     8341 ttggttctta cttgttttgc ataaactttc cactcatcgc taagattaaa tttaaatcct
     8401 actgcttttg cagcaattac atgcatcaaa ggaccacctt gaatacctgg aaaaatggca
     8461 gaattaattt ttttagcaag ctcttcatca tttgtcataa taataccacc tcttgggcca
     8521 cgcaaagttt tatgcgtagt tgaacttact acatgagcgt gtggaaaagg acttggatgt
     8581 tcgcctgcta caacaagacc tgcaatatgt gctatatcag caaaaagata ggcgcctact
     8641 tcatcagcga tttctctaaa tttagcaaaa tcaatcactc ttgcataagc actagctcca
     8701 caaactatta attttggctt ttctttttta gcaatttctc ttactttttc ataatcaatt
     8761 cttccatcaa gttctacgcc gtaaaaacaa ctttcgtaca ttttacccga agaacttact
     8821 tttgcaccat gagttaaatg tccaccatga cttaaatcca ttcctaaaat tttatcacct
     8881 ggattaatca aagccgcata aacaccttga ttagcttgag aacctgaatt aggctgaaca
     8941 ttagcaaatt tacaattaaa aagtttttta catctttcaa tagctagagt ttcaatctca
     9001 tcaacaaatt cacaaccacc ataatatctt ttacctggat aaccttctgc gtatttgttc
     9061 gtcaagatac ttcccataac ttccattact tcaggtaaag tgaaattttc actcgctatc
     9121 atttcaagac cttcgcattg acgctctaac tctttgtttg ttaaatcaaa aatttcttta
     9181 tcaaacattt ctaaactcat tctttctcct ttagttctga ttttaatgga cgcattgcag
     9241 gaaacaatat cacatcacga atggattttt tatttgtcaa aagcataaca agtctatcta
     9301 tacctatgcc ctgccctgcc gttggaggca ttccataacc caaagcattt acaaaatctt
     9361 catccatttc acaagcctct tcatcgcctg catttttagc ttcaatttgt tttaaaaatc
     9421 tctcatattg atcaagagga tcattaagct cattaaaacc atttgccaat tctcttccgc
     9481 aaataaacaa ctcaaatctc tcagcaatct gagaatcctc atcgctacgt cttgataaag
     9541 gacttatgga aataggaaaa tcaatcacaa aagtaggatt gatcaatttt tcttccacat
     9601 aattgtcaaa aagttcagct tgcaaatgtc caagttcaag cttttcattc gcttcaaaac
     9661 catctgcttt taatttagta agaatttttt ccttatcttc gattaaatcc ctatctaaac
     9721 caccatactt acaaagtgcg tctttatagg ttattctttc aaaaggtttg gaaaaattta
     9781 tcatttttcc atcaaattct attgtttttc ctaaattaag tttatccaaa agtaaagcaa
     9841 aaagttcttc ggttaaatcc attaaatctt tataattatg ataggcccaa taaaattcta
     9901 tagttgtaaa ttcgggatta tgagttaaat ccataccttc gtttctaaaa caacgattga
     9961 tttcaaaaac cgcctcaaaa ccacctacta taagtctttt aagataaagt tctggagcaa
    10021 ttcttaaaaa tctttctacg cctaaagaat tatgaaaagt tacaaaaggc ttagcgtttg
    10081 ctccacctgc aatcggatgc atcataggag tttctacttc taaaaagcct ttattttcaa
    10141 aaaaatgacg gattaaactc accactttag aacgcactaa aaaatctttt ctaacttcga
    10201 cattcattat catatcaaca taacgtttac gatatctttg ctcaatatct gttaatccat
    10261 gatatttttc aggtaaagga acaatagctt ttgtagcgag ttttacttcg cttgcatgca
    10321 aactaaattc acctgtttta gttacaaaag gaaaaccttt aaccaaaaca atatcaccca
    10381 cctctaaatt cttttttaaa atcgtataaa gctcttcgcc tacgctatct ttactaaaat
    10441 aaatttgtaa atttgtatcc tcatcttcaa tgtttgcaaa aattgatttc ccagctatac
    10501 gcaaaagttt caaacgtcct gcaacaacag cattgacact ttcatctctt ttttcaactt
    10561 gctctaaaat ataagaaaat ttatccttaa aagtctttaa agacatttcc ttttctaaaa
    10621 aatgaggata aggattaatc cctaattttt ttaactcttt agctttttct attctttgct
    10681 gctctaaaat attatcaaac atttatattt ttacctttgc tttttgatta ttacaatcac
    10741 cacaaacacc ataaagctgc atcaaatgcc ctgtaagttt aaaaccatgt tcttttgcaa
    10801 tcaaggcttg ctgtctttct ataataggat tttcaaactc tataattttt ccgcaatttt
    10861 tacatatcat atgatcatgg tgaggtttat tagcaagctc atatttttta cctgctgaac
    10921 caaaagaaat ggaagttacc atttctgctt cttcaagtaa atttaaagta cgataaacag
    10981 ttgcaattcc tacatttaaa tcaggttcag cttgtttgat ttccatatat aaactttcgg
    11041 gtgtgtaatg aatatcactg tgataaagag tttttaaaag tacttctctt tgcttggtat
    11101 atttaagtcc gccttgtctt aatatttttt taaatctctc aagtaaaaca tcatattcca
    11161 cattttctat cagcatatca ctcccctttt tgagtattgt ttaaatcact tacaatatct
    11221 tgcaactttt cactagcatg atctagacta ttttctgtta aaggttgatt cataataaaa
    11281 gatcccgttt ctttaagtaa atttaaagta tagctatttt tagcaaaatt atctaattta
    11341 tcatttaaaa aatcaattct tgccacacaa aaaactaaaa ttgcaaaaat taaaaagatt
    11401 tttgctccac caaatataaa gccaccaata cgatctaaaa aacctaggcc acttaattta
    11461 atcaacctag aaagaaaatt acccaccaat aaacaaacta tccaaaaaat aattaatatg
    11521 gctaaaaatc cagcaaatcc agctaagctt tgattttcta tcttataaaa agtactttgt
    11581 ataaattcag ctgcttgagt tgcatatttt gaagcaataa aaacaccacc aataataccc
    11641 aaaagtccaa aaatttcttt tatcaaacca ttgataatac ccttaagccc taaaagcaag
    11701 gtaaatccta aaataaaagc atcaaaccaa taaaaattca tttcaatcac tctctgattt
    11761 tttttgtttt aaatttattc tacaaataag cactaaatgc taagttaatc attctatgat
    11821 tttaggaaca acaaaaaaat gttcttgttt ttttggagca caatctaaaa cctcatcaat
    11881 aacattgcta tttcttatct catcaatcct caaaggagct ccacctttta tagtactcac
    11941 agtaatctct tgggaatcta aatcaagttc gtttaatttt tcaacaaaat tcacaatttc
    12001 acttaactgt gcaatagttt catttctgtt ttttgttatt tgtaaagcac ttaatttttc
    12061 aagcttgctt aataatttct catctatttg catttcttaa accttaataa aaaagttaaa
    12121 attttgaaaa ttatatcata aaaagcttta aattgtttag gatattttgc aatttatatg
    12181 atacaatatc ataatttttc tatacaaaaa taaaaatatt ttttcaagga taaattttgg
    12241 gactaaaaga taatttaaaa gctgttaaaa atgaacttaa cacagaagaa caatttatag
    12301 aaaattttat caaaggagag agatttatac gcaagtataa attttatata tctgctgttg
    12361 tgataatttt agttgcttgg tttgctggaa attttataat ctcaaaaata aacgattata
    12421 aaacaaaaga agcaaatgaa atttatgcca atctaataca agatcctagc aataaaaatc
    12481 ttttagaaca acttaaaaat aaaaatacta atctttacac tatcttttta ctaaaagaaa
    12541 atattaatga tcttaataat acagcctttc aaaatgaact aaaacaaatt tataataatg
    12601 ctcaaacaaa cactttactt aaaaatatta ttgcattatc tttaggagat aaatcaatat
    12661 ttttaaaaaa ttatgataaa ttattagaag cttacaaact tttagagcaa aataaaatcg
    12721 aagaagctaa tgttttactt tctcagataa aagaaaattc aagtttaaat caaatagcta
    12781 aaaacctcaa acattatcaa ggcattacac aatgaaaaaa atatttttaa cactattttg
    12841 tttaatattt ctatgtgctt gtggcaccaa aagacaatat tttgaaccaa aacaaaccga
    12901 tggagattta agtcataata gcaatttaaa aagtaaaatc gttgattgga atctagtttc
    12961 tgcaaaactt agcaataata cagctatctt aaaaaataat atctccatag acaagtttaa
    13021 acttcctaaa aattatatgc ttctagctta tcaagatggg gaatatttta ctgcagataa
    13081 taatggaaat ttaaaaattt ttgacaattc ttataatgaa atttataatt ttcaatttga
    13141 cgctagtgtt gtaggaatag cttctaatgg agatgattta gcccttgtac ttgcaaacaa
    13201 tactatagtt cttgcaaatc gttctttggg tattaaattt agtcaaaccc taacctcagc
    13261 tccagctcaa gacagtcgta ccgctaatcc tatattttta gacaatatca tcgtatatcc
    13321 aacgctagat ggcaaaattt taattctttc aagaaacaat cttcaagtca ttaaagatgt
    13381 ggttatttca gcagaaaatt ttttcaacaa tgtaatccat ctaagtgtaa tcggagataa
    13441 acttatagca gcaacagcta aaaaaatcat tgttgtaagc cctgctagaa ctctttatct
    13501 tgacgctgac ataaaagatg ttgcacttag tgatgatggt atttttatac tagaaaaaga
    13561 tggcactatt attaaaactg attataactt aagaaaaatt gcagaaaaaa aatttgaatt
    13621 tgctattttt gtaaaaagca atatatacaa taattattta tatatttttg aaaaaacagg
    13681 ctatcttatc aaaatgaatc taaatttaga taatacacaa gtatttaaac tttcagaagc
    13741 tgttgataaa atttctttca tggggaatgg taaattttac tacggagata aaattttaga
    13801 tttgctatga taaaaatttt agaacaaaca ataaagtctt taaaattaaa tttaaagccc
    13861 tatgacttaa gtatgttgac tagaaaaaaa agttatattt gtgctaaaga tcaaaataac
    13921 attcttttta tgtatacagg aaaaacaaaa tttttaatga aagatgcctt atttttagaa
    13981 aatctagcac agcaaattaa cataaataac aaatattttt ttagtatggc ttctctttgc
    14041 tctaaagcaa aaaatcatct agaaatgaaa ggatttaata tctatgttgc tctgtgatat
    14101 tgggaattca aatgctaatt tcctagatga taacaaatat tttactctta gtatagatca
    14161 gtttttagaa tttaaaaatg aacaaaaaat tttttatatc aatgtcaatg aacatctcaa
    14221 agaacattta aaaaatcaaa aaaaatttat caatcttgaa ccttattttt tatttgatac
    14281 aatttatcaa ggattaggaa tcgatcgcat agcagcttgt tatactattg aagatggagt
    14341 tgttgtagat gcaggtagtg ctattacaat tgatattatt tctaattcta tacatcttgg
    14401 tggttttatc ttgccaggta ttgcaaatta taaaaaaatt tatagccata tttcaccgcg
    14461 attaaaaagt gaatttaata ctcaagttag tcttgatgca ttcccgcaaa aaactatgga
    14521 tgctttaagt tatggtgttt ttaaaggaat ttacctactg ataaaagatg ccgctcaaaa
    14581 taaaaagctt tatttcactg gtggagatgg acaattttta gcaaattatt tcgatcacgc
    14641 aatttatgat aaacttttaa tctttcgagg aatgaaaaag attataaaag aaaatcccaa
    14701 tttactttat taaaaatgtt acaaaaattc tcattgatat caaaccttaa tgaaatttaa
    14761 ctttttgtaa aacaaattca attaaacttt atttagaaaa aagtttatta aaataaaaaa
    14821 aggaaaaaca atgagccaac aagaatttga tgtgcttgtc atcggagctg gaatttcggg
    14881 agcagcatta ttttacgagc ttgcaagata tacaaatatt aaaaatattg ctttgataga
    14941 aaaatataat acagctgcaa cattaaattc taagggaacg agtaattctc aaaccattca
    15001 ttgtggagat attgaaacca attatacttt agaaaaagcg cgaaaagtaa aaagaacagc
    15061 tgatatgata gttaaatatg gactcatgca aaatgcgcaa aataatttca tgttttctca
    15121 tcaaaaaatg gctctagctg ttggagatat agaatgtgat tatatgaaaa aacgctatga
    15181 agaatttaaa gaactttatc cttatataaa atttttcgat aaagcaaaaa tcaaacaaat
    15241 tgaacccaag gttgttttag gagaagattg caatcaagat agacctgaaa atatctgtgc
    15301 catgggtgtt gaaagcggcg aggtttttac aactgtagat tttgggaaaa tgagtataaa
    15361 tctaatagaa caagcccaaa aacaaaataa aaatactttc gttgccttta atcaagaaat
    15421 tattcacata gaaaaaaaag atgatatttt tatattaaaa acctcaaatc atcaagaata
    15481 ccatgccaaa agcgtagttg tcaatgctgg ggcgcactct ttatatttag cacataaaat
    15541 gaacttaggt atggataagt cttgttggcc tgttgcagga agtttttatt taaccaaaca
    15601 aaaactttta aatggcaaag tttatatggt gcaaaatcct aaacttccat ttgcagccct
    15661 tcatggagat cctgatttgc ttgctgatat gaacactcgc tttggaccta ctgcacttgt
    15721 tattccaaaa ctagaacgtt atcatggtct aaaatcagtt ccagaatttt ttgaagcact
    15781 aaaacttgat aaaactgttt taaaagtaac ttttaatatg tttaaagatg caacaattag
    15841 aaattacatc ttttataatt atctttttga actacctttt attgataaaa gcttatttgt
    15901 taaagatgcc aaaaaaatag tcccaagtct taaagcaagc gatatttatt atgcgaaagg
    15961 ttttggaggc gtaagaccac aagttattga taaaactaaa ggagaattaa tgctaggtga
    16021 agcaagcatc acagaaaccc ctggtattat tttcaatatg actccaagtc ctggggcaac
    16081 aagttgttta ggaaatgctg aaagagatgc aaagcttata tgtaattacc taggaatgga
    16141 atttaacgaa gataaatttt cttcagaatt attgtaatca ttttgtttct atttttagct
    16201 acaataattt caaaaggagt ttaccatgct taaaaaaaca aaaattgtag ccacagtagg
    16261 tccagcaagt gaaaaggaag aaattctacg ccaaatgatt atcaatggtg taaatgtttt
    16321 ccgtttaaac ttttctcatg gaacacatga gtatcataaa aaaaacttag ataccataag
    16381 aagagtagct aaagaattgc atactcgtat tggaatttta caagacatta gtggtcctaa
    16441 aattcgtaca ggtgaactta aagaaccatt tgaattaaaa aagggtgata gacttgattt
    16501 ttatcgtgaa acaattttag gggagaagat tgctcaaaat cattataaaa tcagtattaa
    16561 tcaaaaatct attttagata tgttaaaaat tgatgaatat atttatctat atgatggatc
    16621 aattcgtgct aaagtagaaa acatagatga tcaaaaaatt gaaaccatta tagaaaatga
    16681 tggtttttta aactcaaata aaggtattaa ttttccgaat actaaaatca atattgatgt
    16741 tattacacaa aaagataaaa atgatttact ttggggtata aaaaatgaag tagatttttt
    16801 agcaatatct ttcgtacaaa atgcacacga tattgatgaa gttcgtgaaa ttttagcaca
    16861 aaataacgca aaaatatcta tttttgcaaa aattgaaaaa tttgatgcag tagaaaatat
    16921 tgatgagatt attaaatcta gcgatggtat aatggttgca agaggagact taggtattga
    16981 ggtaccttat tataaagttc ctaatatcca aaaagaaatc atacaaaaag caaacaatgc
    17041 ctctaagcct gttattactg cgactcagat gcttttttca ttagccaaaa gcaaaaccgc
    17101 cacaagagct gaaatttcag atgttgcaaa tgctgtttta gatggaacag atgcagtaat
    17161 gctaagtgaa gaaagtgccg ttggtataga tcctgcaaac gctgttgata taatgtgcca
    17221 aactataata gaaacagaaa aacgctatcc atataacaaa tttaatgatt ttaatgattt
    17281 agacaataca gataaaatca tgcgttcttc agctcatctt gcaacagatc ttaacgctga
    17341 tgctattttt tctttaacaa gtagcggaaa atctgctatt aagattgcga gatatcgtcc
    17401 aaatatagaa atcatagcag tagggcattc tgaaaaaacc ttaaactctt taagtatagt
    17461 ttggggagtt aatcctgcga tcttggttaa caaaagtaat gaacttacag aattattaaa
    17521 agactctgta agatcaagtg ttgaaaaagg ttttatggat gaagataaat gctatcttct
    17581 aactgcaggc tttccaacag gagtagaagg tactagcaat cttatccgca ttctcaataa
    17641 agagcaaatt gcttattatc tacaataaaa cattaaattc ctttgaaaat aaggaattta
    17701 atgtccttat aaatttttta agtcaaaagt cgatataaat taaagcctca cacaaaggag
    17761 caaatatgca agtgaatact ttttcaaata tcgctagcat ggcacaaaca caagttagca
    17821 ataagaaggc agatgatgct aaggaaaaca caaaagacaa aaatgttcaa agtgctaatt
    17881 ctagcaagga tgtagataaa aatacccttg aaaaattaaa tgcacttggt ggaaaaggca
    17941 ttacacaaat ttacctagtt cagtttcaac agcaaacaat gaatgctgta ataggttcga
    18001 gcaatgccca aactggacta gatagtcttt taaatggtgc caatttagat gctgcgaaat
    18061 ctatacttac aaatattgat tttgcatcct taggctacag tggcaaaaat ccacttgata
    18121 tgaatacaga tgaacttcaa caacttgtaa gtgaagatgg tttttttgga gtggaaaata
    18181 cagccaatcg catcgcggat tttgttatta aaggcggtgg cgatgatgtt gaaaaattaa
    18241 aaaaaggtct tgaaggtatg aaaaaaggat ttgagcaagc agaaaaaatg tggggtggag
    18301 aacttcctca aatcagtcaa gatacaatag atgcggcact taaaaaagtt agcgatcgca
    18361 tcgatgaact aggcggaaaa actctagatc ttcaagctta actaaaaatg cttagaaatt
    18421 tctaagcatt tttagttgtt attaatatca aaagtaaaaa attcactctt aaaattatta
    18481 ggtaaagttt tatactgaga tatcgcagct tcatagttct ttacttcttg atacaacata
    18541 ccaagagctg ctttactctc tttgttattt ttatctgtaa gtttagaaag ctgcaaaagc
    18601 gctatagctg aatttggatt atttgcacct acggctgcta cggctgctaa aaataaagtt
    18661 ttagtatctt tagctccata atcatcaatc aaagaattat aaagcgcata agcctcctcg
    18721 tattgctgtg caaaaatatc caaataagct aaagtttgta aaataccctc atcttttgct
    18781 cctgaaacat taatcaactc tttaaatttc tgtctttcta aatttaaaag ccctgcaata
    18841 tgcattaaat taacataaaa ttccctagct atatttggcc caccaaaaac actacgataa
    18901 tcaagtttta aatttttaaa atgaatttga gcattttgag catattcttt aatatttaaa
    18961 tttgaattta aagaattaaa atacaaaata tttgccaaaa tatcttcagg caactctgaa
    19021 cgcaatttag caattttcac atctacttga ttattaaggt tattattttt agcaacaata
    19081 gcttcaaaaa tcaaactcaa aggcgtatct ttttttgttt catctaaata aggaagcata
    19141 gaaatataat tattattaac taaaaataac atactttttt gcatattagc tttaaaatta
    19201 gaatcagcag ctatattatc aagaatttca ttgtaaagtt tagttgtatc aatatcaatt
    19261 aattttgcac aaaacatagc aaaagcacct gctaagtaat ttttaggatt aagatgatat
    19321 gaacttgaaa aatgcttata agcaagttca taattttgca tttgggcata agttaaagcc
    19381 aaattataat gtaaaatact atgttctgga taatccttga taagtttttg aaattcttgg
    19441 ttagcaaggc gtaacttctg atttaatgca tagttaataa tattggcaat ttttacattg
    19501 gtagatgaaa gagccttgct tatattaaga taaattccca catcagtact atcatcaacg
    19561 aaatctgtaa cattagcttt tttaatatat aaagcagcct gcttactatc aaaaacctga
    19621 taaggtgcaa aataaaaaag caaatcgaat tgatcttttt gtttttttag caaatctttt
    19681 gaaaaagaat tttgagcaac tgctatatta aaaagatcct tatttaaacg aacttgaatt
    19741 ttataagtat ctaaaatctt atatctatct ttatcgttat cataagaatt ttgcaagcgc
    19801 gctaacatat cttgataatt tcctgtttta atatcaacca atgttaaagc cgccaaactc
    19861 tgattaaaat ctctttcaat tttcatcgct gtacttaaag cgactttagc tttagcatat
    19921 tctcctattc tagcgtataa aagacctaaa gataaactag attcaaaatt gccttgagaa
    19981 tttaattgct gtatagcctt ggaatcaaag tccatttttg cataaatttt agcagacaaa
    20041 tactttgcaa catcagaata cggctccaca tctgttcttt gtaacatttg taaggcctca
    20101 gggtaatatc ctttgtaata attaatcaag cttaaataat aatcatataa ttttgatttt
    20161 ccttcttttg gaagatacac ttgagctaaa tcaatataat atctaaattt ttccttatca
    20221 ttaagcttta aagcacaaac agcagcattg atagcagcta cactttgatt ttctccattg
    20281 gctatagctt tcttgaagct ttcaaaagct tcttggaatt tattctcatt catttgagaa
    20341 acgcctaaat tataattaga taaagattcg ttatatacgg caacttgctc ataaactttt
    20401 aaagcctgtt caacctcacc ctttaaatat aaagcatttg ctttttggat cataccatca
    20461 attctttgca tatcattgta tttatatgat tcatcaggca taacaacagg ttgttctaaa
    20521 ggcttagaag ctataatatc tggtttaatt tttccttcac taaaagttaa ataaaaaagt
    20581 gtaaaaacta aaatacaaat aatccccaaa gataaaccca caagagacat aaacttacga
    20641 tctttatacc aaggcgtagg ctcttgactt tcaacttctt caaaagttga tacatcttca
    20701 ggcgcacttt ctcttgtaaa tttaaaacca ctatcactat tttcttgagg taattcttct
    20761 ggcaatgatg caaattcttc atcttctgga gcttgcccct cttgcccctt aaatccctct
    20821 aaactctcat caagtcttgg ttgatttaag ccatcttcgg gtttttctag tattatatct
    20881 tcttgttcag ccatctatac tctttaaaaa tattttttca aaacatcagg aatatgaatt
    20941 tttccttctt tatcttgata attttccata atcgctacca aggttcttcc tactgccaaa
    21001 gatgagccat taagagtgtg gacgagttca ttttttcctt gttcgttttt atagcgaatt
    21061 ttagcgcgtc ttgcttgaaa atcacgacaa tttgaaaccg agctgatctc acgatattta
    21121 ttttgtcctg gaagccacac ttcaagatct acagtttttg ctgcactaaa acccaaatct
    21181 ccagtgcaaa gcatcaaatg tctatgcgct aaacctaaag aactcagcaa atcacttgca
    21241 cactcaagca tttcattaaa cacactatca ctttgctcag gtttagtgat acttacaagc
    21301 tctacttttt caaactggtg ttgtcttata ataccccttg tatcacgccc tgcactgcct
    21361 gcttcttttc taaaacaagc actataacaa gtcattttta tcggtaaagt ttcactcgct
    21421 aaaatttctc cgctgtaaag attggttact ggaatttcag aagttgagat caaatacaaa
    21481 tcctcatcat ctaccttata catatcttct ttaaattttg gcaactgacc cgtcccaaac
    21541 atagtagcac catttaccaa aaaaggtaca ttaacaaatt caaatccacg acttctatta
    21601 aaatctatca tataatttac caaagcacgg cttaataaag ctccttcatt tttaagcaca
    21661 caaaaacgac tttgtgaaat ttttacccca cgcataaaat caagccaatt taaactctcg
    21721 cctaattcaa aatgttcttt tggagtaaaa tcaaagctag gtggatttaa aactttttta
    21781 agctccacat tttcattttc atcttcaccc acaggcacac attcatcagg gatatttggg
    21841 atggcatgag cgatttcctc aagctcattt tctaaagcat ttactttagc gctttgctca
    21901 ttaattttgc ttttattttc gcttaatttt gcttttaaac tttctttatc ttcggctgta
    21961 gcaagctctt tactgaattt attttgaaaa gcttgaaatt cttccaaggc tattttttct
    22021 ttttttaaac ttgcaaaaag ttcagcaagt ttttttaaga tattttcatc aactttttta
    22081 ttttttaact ttttagccac ttcatcaaaa ttattttgca aattttttaa atctagcatt
    22141 ttctactcct taaagtccga ttttttcata aattttttgc attttttctt gggcgatttt
    22201 tcttgctttt gtcgcaccaa aatccaaaat ttctttcaaa tgcgaaggct tttctaaaag
    22261 ctcattatat ttttctcttg cttctttaaa ataagcattt acaagctcgt ttaaatatat
    22321 tttaaaatgt ccataaccct caccaccttt ttcatagcgt atttgtaatt ctttttgccc
    22381 tgattcatct aaaaaaagct ttgcgatttt aaaaatattg cagttttcat gatcttttgg
    22441 atcttctaaa gcggtactat ctgtaactat ggaagaaatt tgttttttta aggttttttc
    22501 actgctaaaa atatctatag tattttgata agatttactc atttttgctc catcagtacc
    22561 cacaaccaca gctacttctt cattaactct cgcttctgga agggtaaaaa tttcacccca
    22621 ttcattatta atttttaaag caatatcgcg tgcgatttca acatgctgga tttgatcttt
    22681 tcctacaggg acaattcgtg tatcaaaaag taaaatatct gccgccatta aaacaggata
    22741 agaaaaaagc ccatgtgaag cactaagtcc cttagcaact ttatccttgt aactatgtgc
    22801 acgctctaat aaacccatag gagtaaattg cgataaaatc caataaagct ccataacttc
    22861 cttaacatca ctttgcaacc aaaaaacgct tttttgagga tctataccaa ggcttaaaaa
    22921 agccgcagca gcttttaagg aattttgttt aagtttttct ccatcttgag aagaagtcat
    22981 ggcatgataa ttagcaataa acataaacat ttggcttttt tcttgtgcat ctaccatttg
    23041 cttaatcgca ccaaaataat tacctatatg caaatcgcca cttggctgaa ggcctgttaa
    23101 tactctcatt ttatcacctt tttaatctcg cttaaaagct catctatatt tttattttct
    23161 atatttaaaa taaaatttgc cttttgttca tacttgctta aacgctcatt atatattttt
    23221 tttgctttaa tttcatcata aaataaaggt cttttagaaa tttcatcttt gtctaaacgc
    23281 ttttttaaat attcaaaatc tgcttttaaa taaatacaaa aacctgcttt ttctaaattt
    23341 gaaacattaa caaaaccccc acctgtagca atacaagttt tctcacaaga actgaaaaaa
    23401 tcagccattt tttgctcttg ttctctaaaa aaattttccc ctttttgttc aaaaatttca
    23461 ctgacttttt gattaaattt ttgttctatt aaaaaatcac tatctaaaaa aacaagatct
    23521 aaatccttag ctaaagctct tgctaaagtg ctttttccag aacccataaa tcctataaaa
    23581 acgatatttt tagctttcat cattttcttt actgcccttt ttacgcgaag caatcactaa
    23641 aggcacacct tcaaaattaa attcttttct gatttgattt tgtaaataac gcttatagct
    23701 aaaatgcaag gccttaggac gattcataat aagtgcaatt tttggcggtg ctaagtcata
    23761 ttgtactgca taataaattt taaccaattt cccataatca tgcggcaaag gatgtgctct
    23821 tgtggcattt tctatcaaga tattaagctt agaagtttgg attttttgag tgaaattttc
    23881 aaaaatttgc aaaattttat cgagtaaaac atgcaccctt tttccactta aagctgatac
    23941 gctaatcacg ggtgcgtaag ctagaaattt aaaacgatca agacgcaatt cttttacagt
    24001 cttatcaaaa tccatctcac ttttatccca tttatttaaa acaataatca cacccaaata
    24061 atgcttagcc acaagcccag caatgcgttc atcaagctcg ttaaagccct catgcgcatc
    24121 taaaaccaaa agtgctattt gagaatgaga taaaattttt tccgtgcgat ttagggcaaa
    24181 gcgttcgagt ccttgaattt tacccctttt tctaatacct gcagtatcaa caaattctat
    24241 cactttatct ttatgaacta cactttcatt aacaggatct atagtagttc ctgcaataga
    24301 acttacaaca ctgcgttctt gtttaaccaa agcatttaaa agacttgatt ttccaacatt
    24361 tacacgccct acaataccca ctctgatatg attttgatcg acttctttaa attgaaattc
    24421 ttttccttct tcataatact ctaaaaaatc ttctaaattt tcttcttcat cggggattaa
    24481 aaactcttca tgtaaaaatt tttcaagcca ttcataaagt tcatctaagc ctacattatg
    24541 ggttactgaa agattaaaga tttcctttat accaaaattt gcaaactccc aagccctttc
    24601 ttcatctttt ttattatcta ctttattaat cactaaggct ataggttttc caagtttttt
    24661 taaagaataa aaaaattgtc tatcctcatc atcaggcgct aatttcccat caactagata
    24721 aagtatgata tcgctttctt tggctacttt taaagtgttt tttttcacat ttttaaaaag
    24781 ttcatcactt tcatcaagcc ctccactatc aataagcatg gctttttttg aatgaatatg
    24841 aatttgcgtt ttatttgtat ctctagttgt acctgaaata tcacttgtaa tagctattct
    24901 ttgtcttgcc attctattaa aaaggcttga tttaccaaca tttggcttgc ctataagtat
    24961 gatgctttgc atttttttcc tagaaaatta tatttttaaa attatataaa atttggctta
    25021 atattaagca aaaaaagact agaattaacc cagattttag tcaaggaaaa aaatgctaaa
    25081 agtaatcaag cataatttag gaatttattt catgatttta gcatgtttgg attttgcact
    25141 tatgggagct tgtgcaaaaa ttcttagcaa ggaaatgagt tctatagaaa ttatgttttt
    25201 tagaaatatc ataggaattt ttttcatagt ctatctttta aaacgatcta aggcgcataa
    25261 agaaggggga catttttggc tcttggtatt tcgtggagta gtaggcacgc tttcactata
    25321 tatgtttttc tataatgttt caaatattac actaggtgga gcttttgctt ttcaaaaaac
    25381 tgctcctatt tttattactt taatagcttt tgttgttttt aaagaaaata ttggtatcaa
    25441 aggctggata ggaattttaa tagcatttgg tggagtactt ttaatcgctc agccttgggc
    25501 tcataattta aatcattcag gctttgattt aaaaaattca gttataggta tcacgagtgg
    25561 atttttagcc gctttagctc ttacaagtgt aagagaactt agaaaatctt acactacaga
    25621 acaaattgcc ttttctttta tccttttagg aaccttaatg cctttaattt ctatgatcag
    25681 tgctgaattt tttgaaccac agcatcttga ttctttacat ttagatttca ttctagcgcc
    25741 ttttgtgatg ccaagtcttg cagcttggct tatcattgcc attatgggaa ctttaggcac
    25801 catttatcaa attcatgtca ctaaagctta tggtatcgct aaacaagcag gagtggttgc
    25861 cggagttagt tatcttgatg tagtatttag tatgatagtt gggataattt tgggagataa
    25921 tttaccaagt actatggttt ttttaggtat aataggcatt atttttggtg gattaatttt
    25981 agttaagaac aaaggaaaaa aatgaaaaaa atgatactca ttgctggtcc ttgcgtgata
    26041 gaaagcaaag atttgatttt taaagttgct gaacagttaa aaaattttaa tgaaaatcca
    26101 aatatagaat tttatttcaa atcaagtttt gataaggcca atcgcacaag tattaattct
    26161 tttcgaggtc ctggtcttga agaaggatta aaaattttac aaagcgtaaa agatgaattt
    26221 ggtatgaaaa tcttaaccga tatacacgaa agcaatcaag caaaccctgt aagtgaagta
    26281 gctgatgtct tgcaaattcc tgctttttta tgtcgtcaaa ccgatttact tgtagctgca
    26341 gcaaaaacta aggcaaaagt taatatcaaa aaaggacaat ttttaaaccc aagcgatatc
    26401 aaatacagcg ttaaaaaagt tctacaaacc cgtggtatag aagatgaagg ctatgaagct
    26461 gctcaaaaaa atggtgtttt tgtagctgaa agaggagcta gctttggcta tggaaattta
    26521 gtagtagata tgcgttcttt agttatcatg cgtgaatttg ctccagttat gtttgatgct
    26581 acccatagcg tacaaatgcc aggggctgca ggtggaagta gcggagggaa aagcgaattt
    26641 gtagaacctt tagcaagagc ggcagcagcc gtaggcatag atggcttttt ctttgaaaca
    26701 catattaatc cttgcgaggc tttatgcgat ggacccaata tgcttaatct tacacgcctt
    26761 aaaaattgcg ttaatacatt actagaaata caaaatatca taaaggaaaa caaatgaata
    26821 ttattgaagg aaaattaaat ttagactcaa atacaaaaat tgctatcatt aatgcaagat
    26881 ttaatcatat catcacagat cgccttgtag aaggagcaaa agatgctttt ttaagacacg
    26941 gaggcaaaga ggaaaatcta agccttatac ttgttcctgg tgcttttgaa cttccgtatg
    27001 cgttaaaaaa agctatagaa agcaaaaaat ttgatgcaat ttgttgcgta ggtgcagtaa
    27061 ttcgtggctc aactccgcat tttgactatg tttcagcaga aaccaccaaa ggcatagcca
    27121 atgtgagttt aaatcataat atccctgtaa gctttggtgt tttaactaca gatacaatag
    27181 aacaagccat agaaagagct ggaagcaaag caggcaataa aggctttgaa gctatgacaa
    27241 ctgtaatcga gatgttaaat ttaagcaagg agctttaatg gcaacgcgtc atcaagttcg
    27301 ccaaagcgtc atctccttgc tttatgcttt tgagttaaat tctcaaaaca acgtttttgt
    27361 agatgaaatt ttagatgaaa aaaaaatacg caatgaacaa aaaaatttta ctttaaa
//
LOCUS       DARGBD010000014        27331 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.014, whole genome shotgun sequence.
ACCESSION   DARGBD010000014 DARGBD010000000
VERSION     DARGBD010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27331
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.014"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..530
                     /locus_tag="SFZ04_000490"
     CDS             <1..530
                     /locus_tag="SFZ04_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG8064795.1"
                     /translation="EKLQVENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAF
                     NIPLNSFITSDFGKARTFNEKVASYHSGTDFRAAIGTPIYAANSGVVKIAKDRYFAGN
                     SVVIDHGFGIYSQYYHLSKIDVKIGQKIKKGELIGLSGATGRVSGPHLHFGILAGGKQ
                     VDPLDFVSKFNAIFQ"
     gene            527..1477
                     /locus_tag="SFZ04_000491"
     CDS             527..1477
                     /locus_tag="SFZ04_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEG8064796.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLAFMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(1474..2448)
                     /locus_tag="SFZ04_000492"
     CDS             complement(1474..2448)
                     /locus_tag="SFZ04_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG8064797.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPHLKHLAFRAFDEVAMIKKELRSL
                     GVKTVVLNSGVPTTLSVLKQNISYEKYEASRVNGKKLYHKDFLNYAIKLFHMEEKKAI
                     KEVGAMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            2504..3277
                     /locus_tag="SFZ04_000493"
     CDS             2504..3277
                     /locus_tag="SFZ04_000493"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEG8064798.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLHNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            3274..4368
                     /gene="pdxA"
                     /locus_tag="SFZ04_000494"
     CDS             3274..4368
                     /gene="pdxA"
                     /locus_tag="SFZ04_000494"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HEG8064799.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEKLSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFIKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKAGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(4358..4960)
                     /locus_tag="SFZ04_000495"
     CDS             complement(4358..4960)
                     /locus_tag="SFZ04_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064800.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            5079..6278
                     /locus_tag="SFZ04_000496"
     CDS             5079..6278
                     /locus_tag="SFZ04_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8064801.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            6334..6654
                     /gene="ciaC"
                     /locus_tag="SFZ04_000497"
     CDS             6334..6654
                     /gene="ciaC"
                     /locus_tag="SFZ04_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HEG8064802.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            6838..7860
                     /locus_tag="SFZ04_000498"
     CDS             6838..7860
                     /locus_tag="SFZ04_000498"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEG8064803.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVGKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            7857..8759
                     /locus_tag="SFZ04_000499"
     CDS             7857..8759
                     /locus_tag="SFZ04_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEG8064804.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(8756..9952)
                     /locus_tag="SFZ04_000500"
     CDS             complement(8756..9952)
                     /locus_tag="SFZ04_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064805.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLVNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(9954..11756)
                     /gene="uvrC"
                     /locus_tag="SFZ04_000501"
     CDS             complement(9954..11756)
                     /gene="uvrC"
                     /locus_tag="SFZ04_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEG8064806.1"
                     /translation="MIKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISREKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKI
                     ISANSKITPIRNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(11749..12243)
                     /locus_tag="SFZ04_000502"
     CDS             complement(11749..12243)
                     /locus_tag="SFZ04_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064807.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYTVNKNKNDEKLSKNSYLELSKGEFKNCFEDKKLFKKFEDLRELIKKG
                     SNLD"
     gene            12382..13917
                     /gene="guaA"
                     /locus_tag="SFZ04_000503"
     CDS             12382..13917
                     /gene="guaA"
                     /locus_tag="SFZ04_000503"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEG8064808.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPILGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEVKKDSALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSEEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRASLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            14004..15464
                     /locus_tag="SFZ04_000504"
     CDS             14004..15464
                     /locus_tag="SFZ04_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064809.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKLVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRNNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQERLAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            15704..16954
                     /gene="purD"
                     /locus_tag="SFZ04_000505"
     CDS             15704..16954
                     /gene="purD"
                     /locus_tag="SFZ04_000505"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEG8064810.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            16951..17403
                     /locus_tag="SFZ04_000506"
     CDS             16951..17403
                     /locus_tag="SFZ04_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG8064811.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            17393..19441
                     /locus_tag="SFZ04_000507"
     CDS             17393..19441
                     /locus_tag="SFZ04_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HEG8064812.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYAVQYFYNNEEQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            19511..21670
                     /locus_tag="SFZ04_000508"
     CDS             19511..21670
                     /locus_tag="SFZ04_000508"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEG8064813.1"
                     /translation="MQYSIEINKNTEIFNIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEITKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNSVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            21667..22149
                     /locus_tag="SFZ04_000509"
     CDS             21667..22149
                     /locus_tag="SFZ04_000509"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HEG8064814.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(22193..22855)
                     /locus_tag="SFZ04_000510"
     CDS             complement(22193..22855)
                     /locus_tag="SFZ04_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEG8064815.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(22873..24057)
                     /locus_tag="SFZ04_000511"
     CDS             complement(22873..24057)
                     /locus_tag="SFZ04_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8064816.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISTVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVVSNVYTLIFVRLLIGVGLGGLLPCVNALLKKSASAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGIMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            24111..24566
                     /locus_tag="SFZ04_000512"
     CDS             24111..24566
                     /locus_tag="SFZ04_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEG8064817.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLTQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            24818..26113
                     /gene="porA"
                     /locus_tag="SFZ04_000513"
     CDS             24818..26113
                     /gene="porA"
                     /locus_tag="SFZ04_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 2 major outer membrane porin protein PorA"
                     /protein_id="HEG8064818.1"
                     /translation="MKLVKLSLVAALAASAFSAANATPLEEAIKDIDVSGVLRYRYES
                     SNPWSNANFGSGISGKQDHKYRAQVNFSGAISDNFKAFVQFDYNSQDGGYGADSISNT
                     SDTLSVRQLYLTYTNEDVATSVIAGKQQLNTIWTDNAIDGLVGTGIKVVNNSIDGLTL
                     AAFAMDSFNEASDTTVTITQDNSQKITGVQFNRGNPKGDSDVSGALDWSKNIYGAAAI
                     GSYDIAGGQFNPQLWLAYMSDNAFLYALDAAYSTTIFDGINWTIEGAYLGNSVDNKLK
                     DRLDAANGNFFALRGTVEVNGWDASLGGLYYGKKDKVTLTTIEDQGNLGSLLAGEEIF
                     YTNGSNLNGDIGRNIFGYVTAGYTFNETVRVGADFVYGGTKTNIIGQGGKKLEAVARV
                     DYKYSPKLNFSAFYSYVNVDTDPESTHHDAVRLQALYKF"
     gene            complement(26229..27320)
                     /gene="dnaJ"
                     /locus_tag="SFZ04_000514"
     CDS             complement(26229..27320)
                     /gene="dnaJ"
                     /locus_tag="SFZ04_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEG8064819.1"
                     /translation="MTQNADKETIKKAYRKMALKYHPDRNQGDKEAEDKFKLVNEAYE
                     VLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEGFGSSRRRKSS
                     NDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGKLQTCPKCQGR
                     GQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELNIPEGVDTGMK
                     LRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQAILGESIKVPT
                     IRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRIGNQIVQISIKFPTSLNDEQKELLE
                     KLSESFGIKDGMHQEQKGLFEKIANWFKS"
BASE COUNT         9760 a         4430 c         4155 g         8986 t
ORIGIN      
        1 gtgaaaaatt gcaagttgaa aacaaaaaga tttttccacc aaaaaccata caagaacgca
       61 tcactaaaga attaaaagaa gccaatgcga tttatagttc ttatactcca aaagctttat
      121 ttaacggtgc ttttaatata cctttaaatt cttttatcac aagtgatttt ggcaaagcaa
      181 gaacttttaa tgaaaaagta gcaagttatc atagcggaac ggactttaga gctgccatag
      241 gaacacctat ttatgcagcc aattcaggtg tagtaaaaat tgcaaaagat cgttatttcg
      301 caggaaattc agtagtcatt gatcatggtt ttggaattta ttcacaatat tatcatcttt
      361 ctaaaatcga tgttaaaata ggacaaaaga taaaaaaagg tgaacttata ggacttagtg
      421 gggctacagg tagggtaagt gggccgcatt tgcattttgg aattttagct ggaggcaaac
      481 aagttgatcc tttggatttt gtatccaaat ttaatgctat ttttcaatga aatttagtga
      541 ctttttccat gcttggctcc atgaaagcta ttataaaaat gctgtaagta taggaaaaaa
      601 cggagatttt tttactgctg taagcgtagg aaatcttttt ggcacacttt tagccaagca
      661 ttttttaaat ttaatagata aaaaaatttt acaactccct ttagaacttg tagaaatagg
      721 cgctaatgaa ggatatttaa gtcgtgattt tttagccgct ttgcttgaat taagacctga
      781 aattttttct caaatttctt ttttcgtcat agaaccgcat gaaaaattaa gaactttaca
      841 aaaaaagact ttagaaggag tggaatttac tcacaaaaat agtcttaaag aatgccattt
      901 taagaacgct tttttctttt gcaatgaact ttttgatagt tttgcttgcg aacttataga
      961 tcatgataaa atggcatttg tagaaaattt taaacttatt tttaaaaata tggatgaaaa
     1021 tttaatcaca aaatgcaaag ctttaaatct taaaaaaggt gaactcagtt tagagcttga
     1081 aaattttttt aaagatttaa accaaacttg tgagagattt atatttgcgg gatttgacta
     1141 tggaacttta aatccacaaa gttttagctt aagaatctat caaaagcacg aagtttttag
     1201 cccttttgaa gtatctttaa aagatttttt cggcaaaagc gatctaactt ataatgtcaa
     1261 ttttactcat cttcaaaaac tcatcaaaga atatgatttt aaacctttag cttttaaaaa
     1321 acaaagtctt gctttcatgg attttggttt tgaagattta ttagaataca caaaaaataa
     1381 aaacattaaa acttacgaaa gttttttatc tcaagctaaa attttatttt ttaattttga
     1441 tgaaaaattt cattttttcg aatttcaaaa aaactaaaat tttatatttt tcatactcgc
     1501 taaacaaacc ccctccctta aaccctcatc aatgactaga agtttatgtt tatcaaacaa
     1561 agcataaaac agcaaacaac ctgcactcaa ataatttttt ctcatcgcac ctacttcttt
     1621 tatagccttt ttttcttcca tatgaaaaag tttaatagca taatttaaaa aatccttatg
     1681 gtaaagtttt ttgccattta ctctacttgc ttcatacttt tcatagctta tattttgttt
     1741 taatacgcta agtgtagtag gaactccgga atttaaaacc accgttttaa ctcctaaaga
     1801 acgaagctcc tttttaatca tagccacctc atcaaaagcc ctaaaagcta aatgctttaa
     1861 atggggattt gcaattaaaa aatgaatttt aagtttttta tctttaatat ttatgataaa
     1921 tttaggatat ttttttatta attttttata agaaatacaa gatttataat aagaatggta
     1981 atttttttca taaaaactaa taataccaaa atcaaaactt ttaaaacttt ttccaaaaga
     2041 aagctcacaa gaagcccctc ctaaatcaca atatgcaaac tctccccaaa ttttaagcct
     2101 tcttaaacct gattgcatac ctaaaacact gatcttagct tcacttttgg catctataag
     2161 cttaaaatca atcccaaatt ctttttttaa atgggcaaaa atttcatttg tattgcttgc
     2221 ctttctaaaa gctgcagtcg ctacagctct cgctttgctt aaatcttgct ctttagctaa
     2281 aatactcaaa gtatttttta atctttgtat ggcttcttta gaaatttctc cactttgatt
     2341 tagatttttc gctgccccaa taacaaattc atattctttt aatttattta atttttcgtc
     2401 catttgtact gctcttaaag tatttgaacc aagatctata cctaacatga ctttccttat
     2461 ttgattttat agtataatag caaaaaagtt ctaaaggaaa aatatgcttt taggtgtaaa
     2521 tatcgatcat attgcagtgt taagacaagc tagaatggta aatgatcctg atcttttaga
     2581 agctgctttt atagtagcta gacacggaga tcaaatcact ttgcatgtaa gagaagatcg
     2641 ccgtcatgct caggattttg acttggaaaa tattataaaa ttttgcaaaa gccctgtcaa
     2701 tttagaatgt gctttaaatg atgaaatttt aaatttagct cttaaactca aaccccaccg
     2761 cgttacttta gtgcctgaaa aaagagaaga gcttactaca gaaggggggc tttgtttaaa
     2821 tcatgctaaa ttaaaacaaa gcatagaaaa acttcacaat gcaaacattg aagtttcact
     2881 ttttattaat cctagtttag aagatataga aaaatcaaaa attttaaaag cccaattcat
     2941 agagcttcat acaggacatt atgcgaattt gcacaacgca ctttttagta atatctctca
     3001 tactgctttt gccttaaaag aacttgatca agataaaaaa accttgcaag ctcaatttga
     3061 aaaagaatta caaaatttag agctctgtgc caaaaaaggc ctagaacttg gcttaaaagt
     3121 agccgcggga catggtttaa attacaaaaa tgtaaaaccc gtagtaaaaa ttaaagaaat
     3181 ttgcgagcta aatataggac aaagcattgt agcaagatct gtatttacag gacttcaaaa
     3241 cgctattttg gaaatgaaag aacttattaa aagatgaaaa aactagccat tagtataggc
     3301 gatataaacg gcataggact tgaaatttta gtgcgttctc atgaaaaact aagcaaaatc
     3361 tgcacacctt tttattttat ccacgaaagc ttgcttgata aagcttcaaa acttttaaat
     3421 ttaaaacttt ttaatgcaaa aatcgtagct tttaaagatg gaaaagacta tgagtttaat
     3481 tttataaaaa aagaaaattc tcttgaaatt tactctttct accttccttt aggctttaaa
     3541 gtggatgaaa attttgaaat caaagccgga gaaatagata caaaaagtgg actttatggt
     3601 tttttaagtt ttaaggcggc aagttatttt gtctatgaaa aacacgccca tgccttgctt
     3661 actctaccta tacacaaaaa agcttgggaa gatgcaggac ttaaatacaa aggacacacc
     3721 gatgctttaa gggatttttt taaaaaaaat gccattatga tgttaggttg caaagaactt
     3781 tttgtagggc tttttagcga acatatacct ttagctaagg tgagtaaaaa aatcactttt
     3841 aaaaatttaa gtatcttttt aaaagatttt tacaaagaaa cgcattttaa aaaaatgggg
     3901 cttttaggtt ttaatcctca cgctggagat tatggagtta taggcggaga agaagaaaag
     3961 atcatggaaa aagctatagc ctttgttaat gcctttttac actctaaaaa agatgaaaaa
     4021 tttttcaaaa aagccttaaa agatgaaaat ttacaaaaag aattgctttt aaattttaaa
     4081 ggcaagggcg tttatctacc ctatccttta gtagctgata cagcttttac taaggctggt
     4141 ttaaaaaact gcaatcgctt agtggctatg tatcacgatc ttgcccttgc tcctttaaag
     4201 gccttgtatt ttgataaaag catcaatgta agtttaaatt tacctatcat acgcgttagt
     4261 gttgatcatg gcacagcctt tgataaggcc tataaaaatg ctaaaatcaa cactaaaagt
     4321 tattttgaag cggctaaatt tgcaatcaat ttacattcta aagcttaaat ttagccctag
     4381 aatcaatcaa atcttcttta gctaagctgt ctataaaatc ttgcaaatct ttattggtat
     4441 ttaaactttg agtgagtaaa ttttcatatt tatcaacttt atttttaaaa atttgctcta
     4501 aaacttcttt agtctttgta tctttttttg ctctttgcat aagttctaat aaaaccttaa
     4561 tataagcttc ttgcatgcaa tcacttgcat tgagtaaaga taaaatagga ttttcccctg
     4621 cttttgtatt ttgcatattt tttatacaaa tttttctttc tttaagcatc ttttttgaaa
     4681 tggctttaaa atcttttttc atctttttat ctgctttttt tgaaatattt tgatataaac
     4741 tactatagat gttatctact aaagcaagtt ttttattatc aaattcatta cgcacaccaa
     4801 ttttattgca tatcataagt tcatcatcac ttttgccatc atatttgatt ttagagcaat
     4861 caaaactagg ttttacttca tctttataaa taagctcatc aaaactcaaa gcccctaaac
     4921 tcgccaaact taaaccaagc aataaaataa tttttttcat tatttacctt taaaattttt
     4981 attttatttt attttaacaa aaaatatttt gaatttttta aggaaattaa gcctttattt
     5041 tattataatg cgtttttatt ttttataagg aacttaaaat gcaaaattac aaaaaagctc
     5101 tttttgcact agctcttagt gctttttgta tgggcgtaac tgaatttgtt atggcaggag
     5161 ttttggttga tgttgaagcg tattttagcg tagatgcaaa aaccgcgggc tatcttacaa
     5221 ccttatatgc tataggtgtt gttataggtg ctcctcttat caccatacct ttaagtcgtt
     5281 ttcatagaca tacacaactt ttaatcaatc ttggaatttt tgctttagca aatttcatca
     5341 tcttttttag ccaaaatttc tatcttactg cttttgcacg ctttatagca ggaacacaac
     5401 atggggtatt ttttgtcatt gccaccttag ctgtaagtgc tataactcca gatgataaaa
     5461 aatcaagtgc tctagctata atggtcacag ggcttactgt agccttagtt actggagtgc
     5521 cgcttggaac ttttataggg cattattttg gctttaaatt tatcttttta ctcattttta
     5581 tcattacaag cctagcattt tttggagtat ggcatatgat gcccaaaaat ttacatccta
     5641 gcccaaccag tcttaaaaat ctaatccctg ctttttctca tcaaaatttg ttaaaaactt
     5701 atactataac catttgtagt tgtggggctc aatttgttct ttatacttat ttgcaaaaaa
     5761 tacttgtaga aataagcggt tttaaagtcc aagatacagc ttatatcttg cttttatatg
     5821 gaatttgtgc aatttgtggg aatttatggg gcggaaaaat agtagataaa aaaggtgcta
     5881 ttttttcttt gcgtcttatt ttaagcatac aagttctagt atttttaagt gtatttctca
     5941 ccatgcattc taaaatttta atcattttta gcgtagcttt gataggattt tttgcctttt
     6001 caaccatacc tgcactaaaa atgcttagca ttactaaagc taaacgccat acttataaag
     6061 tcatagacag tacagtaagt gtgaatgaag cagcttttaa tgtaggcata gctttagcaa
     6121 gttttttagg tgggattgtt ttagcaagat tgggtataga atttaatgct ttattttcag
     6181 cactttttgt aagccctgct ttgatttttg ccttgctttt tgccaaagat aaattaaatt
     6241 ataaaaaatt tcaaagaaaa agttttacaa aggtataaat tggaatagaa attgcttgct
     6301 tatttaatgt aaagttaaat aaaggaggag aaaatggtag tagataatac tcaaaaaaca
     6361 tcaaatgcta tctttagcac cacaactaaa gttaaagaaa aaaatacttc ggcagatgaa
     6421 tttcaagcca cattaaatga agtaaaaaac aaagaagaaa aggaagataa aaaaacaaac
     6481 tcaagcaaat ttactaacga agacattgat cttggtgctg ttagagaaga ttttagatct
     6541 tatgcttggc aaaaaatgag agaagatcaa tacaaaaaaa atgaggagac tttgctaaat
     6601 aagcttttta ctacaattga cgcaggaaat gccacaaaca atacaaaggc ttaatataca
     6661 aatcaatcaa aactcaaact acataaacga gaattccaat aattctcgta aaatttctaa
     6721 taactctgga taaaatgaaa aaatttatta tttcctctat atgaagaaaa tatagaaaaa
     6781 ttgaccaatt taatttatca aattctgtta taattttgct aaaaacaaag gaaaataatg
     6841 atttttatcg atgcttgctt taaaaaacct acaccctaca cccctatttg gatgatgcgt
     6901 caagcaggaa ggtatttgcc agaatatatg gaagtaagaa aacaagcggg tgattttctc
     6961 tctttatgca aagactataa aaaagcttct gaagtttctt tacagcctat tgatatttta
     7021 gatgtagatg cagcaatcat tttttcagat atcttagttg ttcctcttga aatgggtatg
     7081 aatttacgtt ttgaaaaagg agaagggcct gtttttgata atcctatttc aaccctagaa
     7141 gatttagaaa aacttgacga tcaaaatgca cataaaaaat taaattatgt ctatgatgcc
     7201 ttaaagctta caagagaaaa attatctcaa aacaaggctt taataggatt ttgcggaagc
     7261 ccttggacta tagctaccta tatgatagaa ggaagtggaa gtaaaaatta tgcaaagtgt
     7321 aaaaaaatgc tttatcaaaa cccagaactt ttacataaaa ttctaaacaa actaactcaa
     7381 gttttaaaac tttatttaga agagcaaatt aaagcaggtg ctaatgctat acaaattttt
     7441 gatagctggg caagtgcttt agaatatgat aagttttttg aattctcttt taattatatg
     7501 cttgaaattt caaattttat taaaagcaaa tacccaaata tacctgtaat tttattccct
     7561 aaaggcatta gcggttattt ggatagaatc gatggtaatt ttgatgtttt tggagttgat
     7621 tggagcactc cgcttgattt agcacgtgat aaactatcgc acaaatacac tcttcaaggc
     7681 aacatggaac cttgtagact ttatgataaa aatgccatca aagaaggagt cggaaaaata
     7741 ctaaaaacca tgcaaaataa agctcatatt ttcaacttag gacatgggat cttgcctgat
     7801 attcctgttg aaaatgcaaa atattttatc aagcttgtac aagaaagttc agctaaatga
     7861 aaatactctt tggtcctgtt agctcaaggc gttttggaag atctttgggt atagatttaa
     7921 gccctagtaa aaaacaatgc aattttgatt gtgtttattg cgagcttgat ccaaaaaaag
     7981 cccaagaaaa acaggatgaa attatcagca tagataaaat tatctccgaa gttaaagtta
     8041 tgcttgaaaa aaatgttgaa tttgattttc ttacccttac tgccaacgga gagcctagtc
     8101 tttatcctta tttaaatgag cttattttat ctttacgcag cattgctaaa gataaaaaat
     8161 tgcttatttt aagcaatggt acagctgtat tagatgaaga caaatttaat gctttgctaa
     8221 aactagatgt ggtcaaattt agcctggata gtgcagttgc taaaactttt tatcgtattg
     8281 atagagcttt aaaaaacatt gacttagaaa aaatgataga aaaaatggca gattttagag
     8341 ctaggtttaa tggagatttg attatggaaa ttctagttgt taaagatctt aatgacaacg
     8401 aagaagaatt tgaagcactt aatcaagctt taaaaaaaat catgccttta agagttgatc
     8461 taagcaccat agatagacct cctgcttatg ctgttaaaaa agtaagcgaa gaaaaacttt
     8521 tagaactttc taaacttata gattctactc ccgtactctt agccaaaaga cattatgaag
     8581 gtgaaaaact aagcttcaat gaagaagaat tattaaaaat gcttcatttg cgctcacaaa
     8641 gcgaaataga cattgaagtg aaatttgatg aacaatccaa aactctctta aatcaactta
     8701 tcaaagaaaa aaaggtaaaa attctcgatt tagctggagt taaattttat aaagtttagg
     8761 cctttggcaa atactttcta agtaaagtta taagatcatt tctacttaca tcacttaaaa
     8821 cttcgctcac acaatcaaaa tccctaactt tttcctttga aaaaaagatg atatggcttt
     8881 gtggatgctg ttttttataa gcacttagca aatttctcat ttgctcaaga tcaaatttaa
     8941 ttaattcata atcaagtaaa atcaaacgat aagtctcctt gcttaattct tgttttaatt
     9001 gactaaaaga atttatacat atatttttat cacattgttt ttctattata ttaaaaaaca
     9061 aggttgcatc aaaatcattt tgtttaaaaa gcaatacatt attttgataa ggggttttaa
     9121 attttaaagt gcaaacctta tcaagcttgt tttgcaaaat attttcaaga tctttttttt
     9181 caaaaggtaa agttaaaaaa tactcataat gtgtattttt atgccgaccc atcactataa
     9241 aatcataatt tttctttaca tttttattga aaattttatc cttgataaaa atcaaatgaa
     9301 agtcattaac atcaaaactt aaatttttaa aacaagtgct ttctatgcca aaatacgaaa
     9361 gtaaatttgc aagtaaaaaa ttctcaagct catcattatt aactatggcc acacttgctt
     9421 caaattgcaa aacctttcca tgagatgttc ctataatgct tttatgatgc tctaaagcct
     9481 catttaattc taatctaatt tgatcttttt gagaatttaa ggcatttaaa atcaaagaat
     9541 taatttcttt attataccct tcatttaagc aacgcattgc attagatata tttacaagct
     9601 gatataaatt ttcctccaat aaatgcaaat atctatcttt ttcatgggat attttagtta
     9661 aattttggct cgtagtttca aatttttcct ttaacaaatc aagcgcacta tcaacatcaa
     9721 tctttttttg aaaatttaaa aaatcatttt gcatgcaaaa aattttttga tatattttgt
     9781 ttatatttct attttgccta aaagcaaaaa taaaaagtgt taaagataaa acaaaaatgc
     9841 tagaaaacat acctattttc agttgttcag taacactatc aagctttgag atatcaatac
     9901 ttaaatacgc taaaattaga ttaaaaataa aaattatccc tgctaatatc aaatcaattt
     9961 tcctttatct tttgcgccgc tttcctgcct acaagcattg taagatcttt aaaatcagcc
    10021 ttatatatag attcaaaatt tccataatac gctaaaagtt tttgtataac ccctgaacta
    10081 agtcctaaat ttacaagctt agaactattc aagtcctgtt ttttcttagt attttgatga
    10141 aagctgatag caaaacggtg tgcttcatct cttaatttct gtaagaattg tagtttttta
    10201 tcgttaatgc ttagactaaa ttctcctttt aaggaatgaa ttttatcctt agcaccccct
    10261 ttagctctat gtgcttttgc atcgattttt tcttttgaaa tagctaaaat atcgacattt
    10321 gccccactac ttacaatgat ttctttagcc aaatcaagca aagcctttcc cccatctata
    10381 agccataaat caggaggagg tattttatca aagtccaaag ctctacgcgt taaaacttca
    10441 cgcatttgat catagtcatt tttatgtttt aaatgaaatt ttctatattt tgacttatcc
    10501 caagaattta ttctataagt taccatagct ccaacatttg ccacgccttg caaatgagaa
    10561 ttgtcaaaaa tttctatatc atttggtaaa ttttcaagct caaaataaaa ctttaattct
    10621 ttttgtatag taaaatcatg atttttttgc tctttttcta tatttaaaag ggcattttga
    10681 aaagccaaat cacaaattct tcttttttct cctattttag ggattttaat actgattttt
    10741 ttatcaaacc tttggcttaa aatttcttct aaaagcactc tatcttcaaa ttcttcataa
    10801 acataaataa catttgcaag caaaggaata tccatgctaa aattttctaa aatcagttgc
    10861 ttataaattt cattttgatc ccattgtata tcatttctta taggagtaat cttagaattt
    10921 gcactgataa tttttccatt ttgcaccaca aaacgcaagg ttgaaagcac ggaattttta
    10981 aaagctaaag caaatacttc aaaatcttct aatttcgcaa tatctatttc aaccttaact
    11041 tccaaatctt taatcattgc aatctgatct cttactttag ctgcttcttc gtaattttca
    11101 ttttgtgcta aaacaagcat ttgtttttct aagtttttaa gcaaaacact aggatttaaa
    11161 agtgcgtgta tagcctcatc taaaatttca aggtattttt ccctgctgat gagtttatca
    11221 caaggtgcaa gacaacgaga aatttgataa aaaatacaag gggatttaca acttgctttt
    11281 tgctttaaag gatagtataa ataaagcgca tctaaaagct ctctagcgcc tttaaaaaaa
    11341 gggccaaaat atttaatttt gctttttttt actaattttc tagtgatctc aaagcgtgga
    11401 aattcttctt caaaatccac ataaatataa ggataagttt tatcatctct tagcaaaata
    11461 ttatattttg gatgcagttg tttgataaaa gaattttcta aaatcaaagc atcagcctct
    11521 gaattagtag caataaattc caaatgcact gtttcttcaa tcattttttg aattcttaaa
    11581 gaatttcttg gatttgcatg taaatttgga gtaaaggcaa aataagattt gacacgattt
    11641 ttaagatttt tagccttgcc tacatataaa agctttcctt cttgattaaa atattggtac
    11701 actccagcac tattgggaag agtttttaac tcattttcta aattctcttt aatcaagatt
    11761 agaacctttt tttataagct ctcttaaatc ttcaaatttc ttaaataatt ttttatcttc
    11821 aaagcaattt ttaaattcac ccttagaaag ctccaaataa gaatttttag agagtttttc
    11881 atcatttttg tttttattta ccgtataagt gtatttttga gaaaagattt ttatatcttt
    11941 tatatcaaca aatccgctta aaggatattt ttgtccatat gcttttatga gaaatttaat
    12001 ataaattttg ctatcatcat gatttaattc ttgataagct gctggatgta aggttattat
    12061 atttaaaata tgatttttta cataaatttt agcaatcaaa cgttgcttag caagcggaaa
    12121 agaacttaaa aaatctttgc aaaaaaataa ggtttttaaa ggcttataat gaggtttatc
    12181 catcaattca ttaataacag cactagcgtt tttagtcatc ttaatattat ttctttttcc
    12241 cataagatga ttttagcatt tcttttctta attttcttct gtgcttgcgg atataaaggc
    12301 aaccctcaat acacaagcta tgaacaaaat ggttcggtaa aaaccattaa aaaatacgaa
    12361 caattacata ggtggtaaat aatgaaaaaa gcagatattt tagttttaga ctttggctct
    12421 caatacactc agcttatagc aagacgctta agggaacaag gagtttatgc agaaatttta
    12481 ccttttaatg taagcttggc tgatattaag gcgaaagaac caaaaggtat tattttaagc
    12541 ggaggtccag caagcgtata tgcaactgat gcgtattttt gcgataaagg catatttgac
    12601 ttaaatctac ctattcttgg aatttgttat ggtatgcaac tcatggcaca tcattacaaa
    12661 gctacagtag cacctgcagg acataaagaa tacggcaaag caaacataga agttaaaaaa
    12721 gatagcgctt tatttaaaaa tcttccaaaa aaacaaaccg tttggatgag tcattctgat
    12781 aaagtagaaa atttacctca aggttttgaa gttttagcca caagtgaaaa tagccctttt
    12841 tgtgtttttg gaaatgagga taaaaaattc tttgctctac aatttcaccc agaagtacaa
    12901 cacagcgaat ttggcaaaaa tatcttaaaa aattttgcta aatacgcttg caattgtgaa
    12961 agtgtttgga atatgggttc ttttgcaaaa actcaagcag aaaaaatccg cgaagaagta
    13021 ggcaatgata aagtgctttg tgctgtaagt ggcggagtag atagtagcgt agttgctgca
    13081 cttttagcta gcgctataaa agagcaagtt atagtagttt ttgtagataa tggactttta
    13141 agaagtgaag aaaaagaaca agttgaattt atgtttaaaa acactttagg catcgatctc
    13201 atcagcattg atgcaagtga aattttctta agtcgcttag ctaatgtcac agatcctgaa
    13261 caaaaaagaa aaatcatagg aaataccttt atagaagttt ttgaagaaga agcaaaaaaa
    13321 cataaagatg taaaatatct tgcccaaggc acactttata ctgatatcat agaaagttct
    13381 gttgtaggtg caagcaaaac cattaaaagc catcataatg tagggggctt acctgaaaaa
    13441 atgaatctta aactcataga gcctttaaaa gaaattttta aagatgaagt gcgtgcctta
    13501 ggacttgagc ttggacttag caaagaagta gtttatcgtc atcctttccc tgggccaggt
    13561 cttgctatac gcattatggg agaagtaaat cgcgctagct tagaactatt acgcaaggct
    13621 gatgtaattt tacttgagga acttaaaagt acaggttggt atgataaaac ttggcaagca
    13681 ttttgcgtac ttttaaatgt taaaagcgtt ggagttatgg gggataaccg cacttatgat
    13741 aatgcagttt gtatacgcgt tgtagatgca agtgatggta tgacagctac cttctcgcat
    13801 ttaccttacg aaattttaga aaacataagt cgccgtatca tcaatgaagt agaaggtata
    13861 aatcgcgttg tttatgatat ctcaagcaaa ccacctgcaa ctatagaatg ggaataatcc
    13921 atttttttct agctcttatt tttaatataa aatttttata aaaataaggc tagaatttat
    13981 ttaagaaatt tcaaggaaga aatatgcatg gaaaaatagc tatttatatg gattctacag
    14041 gacgtggaac cgttacaaac tcagcaaata ccttttttga ctttaatcgc caaatttgga
    14101 atgataaaaa aagtatgcca agtgttggta tgcttgtgga atttagaact ctttctagcg
    14161 aaaaaaaagc agaagacggc aaactcgttc aaacaagcaa aaccataaca ggtataaaac
    14221 cttcaaaatt tcaagaattc aaagaagggg attttatcac tgagcatgat ttttggaaaa
    14281 ctgataatga tgatgaatta gaagacttgc aaaactcaag aagaagtgct tatataacag
    14341 aactctatag aacaacagac tttgacacta tagaaaaaat tcctctttct tttactatac
    14401 ctcaagctat acaaaaatat tttgcccatg aaattttatc cgtagaaacg cttcaagcca
    14461 atctacaaga tgaaaaggaa attccttgta tacttgatta tcttatactt aaaagatttt
    14521 tatttaaagc ttatgatact ttaattttta tggataatag catagaccaa acccaattta
    14581 gcgcattaaa aagcatcatg atgcatttag agaattcata caagcaaatg atggctgatc
    14641 aaaaaccaaa tatcactaaa atttttaacg aaactttttt atctttgcag tgtcattacc
    14701 aagctttagt agccaccata gatacaagaa acaatcgtct agcctcactt gaagcacaaa
    14761 tgaaaacttt acaatctgaa ataaatctta aaagcaatgc gaccgatgca gaccctgaaa
    14821 aacttaaagc acgacaagaa agattggcta aactacaaaa agaagcagaa tactacagaa
    14881 caacactaaa aagacttgat gctataaggg aagattttta taagaaaaat tacaatattt
    14941 tcgaaaatgc ttttaaactt tcacgagaaa agctctttaa aaaaattgtc acaggtttaa
    15001 atctatgcgc aaccataatg gatgttaaaa tttggcactt gtctttaaaa tcatcagggg
    15061 ttaaaaattc ttattttact atgagtaata tagaaaattc tttctgttct ctttcttttg
    15121 cagaacatta cttaagtcgc ttaaataaat ccgctctaaa tccttttgat caaaaacttt
    15181 tagtgtatat tcaaaaaatc acaaaagaac aaagaaaaaa atttttagtt gtcacatcgg
    15241 atttagattt attatgcaaa ttaaaaattg aaaacttttc acaaaatccg tattatttag
    15301 taaaatacgc acctaaaaaa gtgaattatc agtctttaat gcgtgataac acctttgata
    15361 tagtctatat tgatgaaaaa catgtttggg aaaatgttgc cgatattatt ttacaaggaa
    15421 agcattttga caaatcagga aaaaccaaat ttaaactgat ttaagacata gaaatttaag
    15481 ctaaattaag ttataatttc cttgcctaaa cagtttgtgg tatttaaagt gatccaacac
    15541 atttttatta actgcgattg tgtgatttac cgtgttctgt ggcatcgttt gagctttgaa
    15601 aaaagtgaga agttgcagcc tttaaaaatt acctagcggt tttctttgac tttttggggt
    15661 caatctttgt taaacggctg tttgggttta aaaggagata taaatgaaaa taatgatttt
    15721 gggtagtggt gcaagagaat attctattgc tttagcctta agaagagtag acaaaaattt
    15781 agagttttat tttgctcctg gaaatggcgc taccgaaagt cttggaacaa atttaaacct
    15841 aaaagatcca gtagttttag caacctatgc aaaagaaaaa ggttttgatc tttgtatagt
    15901 aggaagtgaa agttttttag ctgaaggggt tgtagatatt tttaaacaac aaggacttgc
    15961 tatttttggg ccaagtaaag ctgctgcaat gcttgaaacc tcaaaatctt ttatgaaaag
    16021 ctttcttaaa aaataccgta tcaaaacagc caaattttta aacacaaatg acattgaaaa
    16081 agcaaaaaat tttatatata gtttaacccc tcctatagta gtaaaagccg atggactttg
    16141 cgcaggaaaa ggtgttatca tagctaaaac tcatgaagaa gccatagaag aaacagctaa
    16201 aatgctgagc ggagaaagct ttggagatgc tggaaaactc gttgtaattg aagaattttt
    16261 agatggttat gaattaagca tttttgcagt atgtgatggc aatgattttg ttttacttcc
    16321 tgcagcacaa gatcacaaaa aattactcga taatgatcaa gggccaaata ctggtggaat
    16381 gggtgcttac gctcctagct ctttggcgaa tgaaagcttg cttagaaaag ttcaaaaaga
    16441 tattatttta ccaactttag caggtatgaa aaaagaagga gcggaatttt gtggtgtttt
    16501 atttataggt gctatgatcg ttggaaataa accttacgta ttagaattta acgttcgctt
    16561 tggcgatcct gaatgtgaag ttttaatgcc tttaatcgaa gatcctttag agcttatttt
    16621 agctgctact caaagacgct taagacactc aaaaatcaaa atcaaaaaag aatttgcagt
    16681 aggggttgta tgcgcaagtg aaaattatcc ttacaaaagt tcaccaaaaa gtgaaattac
    16741 cgtaaataac attcctgaaa actctcatat ttcttatgct ggagtaagcc tagaagatgg
    16801 caaattaatg gctgatggtg gaagagtttt agtttgcgtt ggcacaggaa aaagtataga
    16861 agaagcgcaa aaaaatgctt ataaactttg tgataatgta aatttcaaag gaaaacaata
    16921 cagaaaagac atcgctcatc aggttctgaa atgaaagaaa atttacaaga ccgcttagag
    16981 cgtgaaaatc taaaaatagc aagttttgga aaaagagttc tagctttttt aatcgatgat
    17041 atggttattt ctttgattgt gtttatcatt ttttatgatc gtctaatcca agcaaaagat
    17101 ttatttgaaa caactcaaat tgtaggaaat ttttaccttg gcttcatctt gcttcatttt
    17161 agttatcaag caatttttac ttatctttat ggagcaagtt tgggaaaaat attatgcaaa
    17221 attatcatct tggatgaaaa tcttcttgac aaacccaatc tcattcaaag ttgcatcagg
    17281 tctgccgtaa gacaagttag tgctatggcg tttatgcttg gatttgcttg ggctttaagc
    17341 aatgatttac gcaaagcttg ggaggattat ctagcaagga caatagtagt cgatgtggcg
    17401 taaattttcc ctattgctag gaactagcat agctttaaat gcagcacaag ttgatattta
    17461 cgctcttgat gcaaaaaaag aaggtgatat tcttaccgcg aacaatgatg ttattatttt
    17521 ttctgatttt tatttcatca ctgccaataa agcaatttac aatgaaaaaa ccggagatgt
    17581 tgagcttttt ggcgatgtta acatcctaag gggacaaaac gaaagatcac attctgatta
    17641 tgctaaaatc aacctaaatt ccaatcaagc cgattttagt aattttttct tttccaataa
    17701 caatcttgaa gtatggtttc aaagcaaaac aagccatcta aatgataaag tctttgaaag
    17761 caaagtttca gcagtttcaa gctgcaatgt tgaagatcct gattgggaaa ttcgtttttc
    17821 aaaaggctgg cttaaccggg aaaccaattt tgttcatctt tacaatgcaa gattatatgt
    17881 taaaaatacc ccagtttttt atctacctta ttttggattt agcgctgata ctcatagaca
    17941 aagcgggctt ttaatcccaa aaatcgtttt aaaaagtagc gaaggcttat actatgaaca
    18001 acctatttat atagccactc aagaaaattg ggatttagaa cttgatccac aaattcgaac
    18061 aaaccgtggt tttggacttt attctacttt aagatttctt gattctccat attcaacagg
    18121 agaattaaat tttggtgctt ttagggaaaa tagctcctat tttcacgatg aaaatttgaa
    18181 aaatcaaacc cactatggaa tagaactaaa atactcaaga gatgatttaa tcaaatcttt
    18241 actcagtgat aattttcaag aaggcctatg gatagatgca acctatctca acgatgtgga
    18301 ttatttaaat ttaggaagta gggattatcg agatcttaac tcgcttgtaa cctccaaaat
    18361 caattatttt ttagctgatg aaaacaattt ttatggagct tatgcaagat attatatcga
    18421 cacatctaaa cttagcaaca atacaacctt gcaagaatat ccaagctttc aatatcatag
    18481 atttttaaat aacctttttg atgaacgcct gcgttattca tttgatgctt catttcataa
    18541 tttttaccga cctgctggtt cttatgcaaa tgagctaaat ttagacttgc ctatctcgta
    18601 tcacaacgct ttttttggag actttttaca ctttactttt acagaaagat tttatgcttc
    18661 ttttgtaaat tatagcaacg atcccgaaag aaaccatgag cattatttca gaaacactca
    18721 tgattttaat ctctacaccg atctttcaaa agcttatgaa aatttctttc atactttaaa
    18781 tttaggggtg aattacattt taccaggagc aaaatcaggt aaaatcacgc aagattatct
    18841 tgaagaatac gacaaagaaa acgaacatac aagtctttat gctgtgcaat atttctataa
    18901 caacgaagaa caaaaaaaac tcaaacacag aatttcactt gactatctca ataaacaaaa
    18961 tgaattctat gaacttgaaa atcttttaac ttattatttt aatgaaaata tcaatctcaa
    19021 cagcgaagtg ctttactctt atgaacaaag tcgctttacc aatgtcatca gccaaataga
    19081 agtcaataca aattcaaaat ttaattggat gttttctcat gcttatcaaa acgatgagta
    19141 tggaaaatat agctttattg gtacaagagc aaattatatt gccacaccta attacaattt
    19201 atttggtgga atttggtttg atactcaaag agctcatgca aacatgtggg aacttggcta
    19261 tacctaccaa agaaaatgtt ggaactattc tttaatgtat agagaaagaa tcgatccaca
    19321 actcacaagt ggtggtatca cagctaaaaa tcaaagcgga gtttatttta ttttcaactt
    19381 ctatccttta ggaggagtaa aatacgattt ctctttagca gaaagtgaaa acaaaattta
    19441 aaaaggatga aatttgctaa atattttaaa aaattttacg aatttattat ctggtaaaaa
    19501 aggaaaaata atgcaataca gcatagaaat taacaaaaat acagaaatat ttaatataga
    19561 caaagtcgcc aaacaagctg ccggtgctgt tttaatgaga caaggcaaaa gcgttgttct
    19621 agctacagtt gcaagagaag aaaaacaagt tgaagaagat tttttacctc taaccgtcca
    19681 atacatcgaa aaagcttatg ccgcaggaaa aatccctggt ggttatgtca aaagagaaac
    19741 caagccaagc gatgcagaaa ccttaacagc acgcattatt gatagaagct tacgccctct
    19801 ttttccaaaa ggctatgctt atccgactca aatcgttgtg atggttctct cagctgatcc
    19861 taaagtagat ttgcaagtaa tgagcttaaa tgccgcaagc gtggcacttt atcttagtga
    19921 tatacctatg aaagctccag tatgtggtgt gcgtatagga aagatagatg gaaatttcat
    19981 actcaatcca aacaatgaag agcttcaaaa tagcacccta gatctctatg tagcaggtgt
    20041 aaaagatgag cttttgatga tagaaatgag agccttacct gatcaaaaag aaaatgaaat
    20101 ctttatcgaa gctccttatg ctgatgtttt aactcaaacc acttcacaaa atatgaatga
    20161 acttagcgaa gatgaaattt tagaagctct aaatttagct caaaaagcta tattaaatgg
    20221 ttcaaatgct tatgaagaag cctttagcaa acacaaaaaa aattctcaaa tcgaactaaa
    20281 aaatgagatt gaacatcctg aaattttagc ttttatagaa aataatttcc aaaaacaaat
    20341 caaagaagcc atcaatcaaa tggcaaaaag cgaaagagca agcgaactaa ataaaatcgc
    20401 taaagaaatt ttaaatcttg aaatcactaa agactggagc gaagaaagtg tcttaaatac
    20461 cttagctaaa gtcaaacgca aacttattcg tgagcaaatt ttaaatgaag gcaaaagagc
    20521 tgatggtaga agtttaaacg aggttcgtcc tattagtata gaaaccaata tcttgccaaa
    20581 cgctcatggt tcttgtcttt tcactcgtgg acaaactcaa gccctagtgg ttgcaacctt
    20641 aggcggagaa aacgatgctc aaatgataga cttgcttaca gaaaaaaatc ctataagcga
    20701 acgctttatg gtaaattata attttccagg tttttcagta ggcgaagcaa gtcctatcaa
    20761 agctccagga agaagagaac taggacatgg aaatttagcc aaaagagcac tttatccaag
    20821 tgtggatgaa aactatcctt atgtaatccg cttagtcagt gaaattttag aaagcaatgg
    20881 ctcaagttct atggcaacgg tttgtggcgg atctttagcc ttaaaagcag caggagtgcc
    20941 aagcttaaaa cttgttgcag gagtagccat ggggcttatc tttgaagata acaagtatgc
    21001 tgttttaaca gatatcatgg gacttgaaga tcatgatggg gatatggact ttaaagtagc
    21061 aggaagcaaa gacggcgtta ctgctcttca aatggatata aaactaggtg gaatcgatca
    21121 agaaacacta aaacaagctt tataccaagc caaagaagga agaattcaca ttctaaatat
    21181 catggaagaa gccgccaaag aaatcatagt caatgaagaa gttttaccta aacttgagct
    21241 ttttagcgtt gatccttcaa aaatcgttga tattatagga caagccggaa aaaccatcaa
    21301 agaaatcgta gaaaaatttg gcgtttctat agacttagat cgcgaaaaag gtgaagtaaa
    21361 aatagcaggt agtcaaaatg agcaaatcaa agccgcaaaa gactacatca taaacatcac
    21421 aagctctcaa aaaggaacta aaaaaggctc taaagacaaa gatatatcag gctttgaact
    21481 tgggcaagaa tttcaaggta ttgttaaaaa aatcgctcct tttggagcct ttgtggaact
    21541 taaaaatagt gttgatggtt tattgcatag ttcaaaaagc aagcatctta atttaagcga
    21601 aaaccaaagc ttaaaagtta aaatcagcga aattaaaaac ggaaaaattt ctgtggattt
    21661 gtgtgagtga gtgaatttct aactcatcct tttgagcctt tttttgacaa agattctaaa
    21721 atcttaattt taggatcttt tccttcggta aaatcaagac aagatggctt ttattatcaa
    21781 cacccaagaa atcgtttttg gcctatacta gaaacacttt ttgatgtaag attagaaaat
    21841 atcacagaac aacaagcctt tttaagaaaa aaacatatcg ctctttggga tgtacttcaa
    21901 agttgcaaga taaaaaattc agatgataaa actataagtt atgcaaaagc caatgattta
    21961 agcccgatcc tttctcaaac caaaatccaa gccattttta ctactggaca aagtgcttat
    22021 aaatttttta ttaaattcca ccctcgctta aaagccatag ccctaccctc aacttctcct
    22081 gcaaatttaa atttttcttt tgaacagctt ttacaaaact atgaaataat caaaaaattt
    22141 acaaaataac aaactaagca ttaccccccc cccaagtaaa acaagaaaaa agctagttaa
    22201 tatctagctt ttgcgtgtta tccttgaatt caaattccac tctcttagct ccaaaacctt
    22261 tagcaatagc ttctaaagta tccttagcac ttttatgaat tttgctttct aaattttgga
    22321 taagatttaa agacaagtct ttaacctcat ctttggcttc ttttatgagt ttgtttttat
    22381 cactttcgct aaaactaatc cccgtactat tgatagaatc aggcagtaaa aaaggtaaaa
    22441 atttagcatt tttttcatca taaaatttca tatctatgat gctgtgtttg tatctacact
    22501 ctggcatgat gatcttataa gcatcgtccc ctaaaggcaa aatatcaaag tttttatccc
    22561 ttaaatcata caagaaagtg atctcaaatt caaaaatcaa agcaatctgt ctttcactca
    22621 aagaccatcc taaaagattt ttccaaattc cattaaaagc actatctttt ttagtgacaa
    22681 tctctttact aaaaacttga aaaacactta attctcctat ggatttaagc tgcatgatat
    22741 cgctaaaact ttgcgtactt ttttcttcta ttttagggct tttatactgc ctaaaaagca
    22801 ctacaaacaa aagcacaagc aaaatcatca ctaaaacaaa taaaatcatt tccattttaa
    22861 acctttctaa atttataaac cttgatttga aaagatatat tttttctcaa acgccaagaa
    22921 aataaaagca ttaatgataa aaatcaaaca cacaaaagta aaaacaaatt ccacgctaaa
    22981 atgtgaagcc ataatccctc cgccaaaagc tccacaaaaa tttcccaaaa attgacaagt
    23041 ttgattaaaa ccaaaaatca cacttaaatt tttagcactc gcactttttt taagcaaggc
    23101 attcacacaa ggcaaaagcc ctccaagtcc tacacctata agtaaacgca cgaaaataag
    23161 cgtataaaca ttacttacta cagcctgcaa ataaaagcaa attccacaaa atatcaaagc
    23221 tccaaaaata atcttactag gccctatctt atcggcgatt tttccaagtt ttggtgcgaa
    23281 aaaaagattg ctaatcccac ttgcagccac tactataccc gcccaaagag ccaaatttcc
    23341 accttgatga atttgctcaa catagatact taaaatcggc atcactccaa aagtaccaaa
    23401 ttgtatcaca aaagtagtga taaaaagaac gataataagg gttttgtttt ctttcacttt
    23461 ttgagtattt ttcttcgcct ctttttgaat ttttctctca tggatgaaaa aataaatcgt
    23521 cacaaaagaa caagcgatca aaaaagccac catatcaaaa accgtactaa tactaaaaaa
    23581 ttcagccaca aagccaccaa acaaaggccc aagcaaactt ccacttatag aagccgtaga
    23641 aagagttcct aaagcataag ccactttttc tttaggtgct atcacagcga taaacacaac
    23701 agcagcagaa gtaaaacccg aaattatccc tgttaaaccc cgcacaaaaa ctacttctaa
    23761 agcactatga gcaaagctaa gccataaggt taaaaccgac atcccaaaac ttgcacgaag
    23821 aagcatattt ttataaccat actttgcacc caaaaaagcc cacaaaggtg aaaaaacagc
    23881 cataaaaagt ggagtgatcc caaaagcaag ccctgagtaa aacgctattt cactcgtatc
    23941 aacatgtcct agttctttga tataaaaagg caaaatcgga gcgatttgac taagccccat
    24001 acttgtggta aaaacaccaa accaacacac aagcaaagtt ctattgaaat tttccatgga
    24061 tttattgtat gatatttttt ataattttta attaaaactc aaggataaaa atgaaaaaaa
    24121 tactctttat atgcttaggc aatatatgcc gttcgcctat ggcagaattt atcatgaaag
    24181 atcttgtcaa aaaagcaaat ttagaaaaag aattttttat aagcagtgct ggaacttcag
    24241 gagaacacga tggagaaggt atgcactatg gcaccaaaaa caagcttact caacttaaca
    24301 tagaacacaa aaacttcaca agcaaaaaac tcactcaaaa gctttgcgat gaaagcgatt
    24361 ttttaatcac catggacaat tctaacttca aaaatgtttt aaaaaacttc accaacaccc
    24421 aaaacaaagt tttaaaaatc actgatttta gccctagtct aaactacgat gaagtccctg
    24481 atccttggta tagtgggaat tttgatgaaa cttataaaat tttatcccta gcttgtaaaa
    24541 atttacttgt ttttttatca aaataattta aaacaactat atattacttc ttgtttactt
    24601 tttaggctta tacttctaaa cgaaccgaaa aacattcata agaaaaactc cttaaaatta
    24661 cacgcctagc ttaaatccct ttagctaggc ttttctttag atgtttttat ccttcggatt
    24721 taaaattttt actattttaa gtgcttctta agaaaaaact ccaaatttat gtgctacaat
    24781 tacgatgttt tattaatttt tgacaaggag aattctcatg aaactagtta aacttagttt
    24841 agttgcagct cttgctgcaa gtgctttttc agcagctaac gctactccac ttgaagaagc
    24901 gatcaaagat atcgatgtat ctggagtatt aagatacaga tatgaaagta gcaatccatg
    24961 gagcaatgcg aattttggtt ctggtatttc tggaaaacaa gatcataaat acagagcaca
    25021 agttaacttc agcggtgcta tatcagacaa ctttaaagct ttcgttcaat ttgactacaa
    25081 ctcacaagat ggtggttatg gcgcagatag catcagcaac acaagtgata ctttatcagt
    25141 tcgtcaatta tatttaactt atacaaatga agatgttgct acaagcgtaa tcgctggtaa
    25201 acaacaatta aacaccatct ggacagataa cgctattgat ggtttagttg gaacaggtat
    25261 taaagtagta aacaacagca ttgatggttt aactttagct gcttttgcaa tggatagctt
    25321 caatgaagct tcagatacta ctgtaacaat tactcaagat aactctcaaa aaattacagg
    25381 agttcaattt aatcgtggaa atcctaaagg tgatagtgat gtaagtggtg ctttagattg
    25441 gagcaaaaat atttatggtg ctgcagctat cggctcttat gatatcgctg gtggacaatt
    25501 caacccacaa ttatggttag cttatatgag cgataatgca ttcttatatg ctttagatgc
    25561 agcttatagc acaactatct ttgatggaat taactggact atcgaaggtg cttacctagg
    25621 aaattctgta gataataaac ttaaagatag attagatgca gcaaatggta atttctttgc
    25681 tttaagaggc actgttgagg taaatggttg ggatgcaagt cttggtggtt tatactatgg
    25741 taaaaaagat aaagttactt taaccacaat tgaagatcaa ggtaatcttg gctctttgct
    25801 tgcaggtgaa gaaattttct atactaatgg ttctaattta aatggcgata ttggtagaaa
    25861 tatctttggt tatgtaactg ctggatatac ttttaatgaa acagttcgcg ttggtgctga
    25921 ctttgtatac ggtggaacaa aaacaaatat aattggtcaa ggtggtaaaa aacttgaagc
    25981 tgttgcaaga gtagattaca aatactctcc aaaacttaac ttctcagcat tctactctta
    26041 tgtaaatgtt gatacagatc ctgaaagcac tcatcatgat gctgtaagac ttcaagctct
    26101 ttacaaattc taagaagctt ttaagtctaa cttcaaggcg gggttttgct ccgccttttt
    26161 ttatgcctga tttttaaaac ttaaatttat ataaaaagat tttcccaagc taaaacgctt
    26221 taggaaaatt aagacttaaa ccaattagcg attttttcaa aaagtccttt ttgctcttga
    26281 tgcataccat ctttgatacc aaaactttca cttagttttt ctaaaagttc tttttgttca
    26341 tcgtttaaag aagttggaaa tttgatagaa atttgaacga tttgatttcc tatgcgagaa
    26401 ctatgaacat cttttacccc ttctttttca agaacaaatc tttgtccatc tttagcaccc
    26461 tttggtaaat ttaaggtcgc ttcaccgcgt atggtgggta cttttatact ctctcctaag
    26521 atagcttgag taaaaaacac tggaaattct atatatatat catcatcatc tctgataaaa
    26581 gtatcatctt cagcggcgat gatcttaaca tacatatccc ctctagtacc attttttaag
    26641 atattacctt tagcattgac acgaagcttc atacctgtat ctacaccttc tgggatatta
    26701 agctcgacac tatctttgct ttcattataa cccaaacctt tacaatcact acatttttca
    26761 ctagcttttt ctccaattcc ttgacaatca gggcaagttt gtgcaaaagt gataaaacct
    26821 tgagaaaccc caacctgtcc tctaccttga cactttggac aagtttgaag ctttccatct
    26881 ttagcccctg ttccattaca agttttacaa gagcatttat aagtaaagtc tatatttttc
    26941 ttacaaccaa aaaccgcttc tttaaaactt aattttaaat taacgataaa atctgaaggg
    27001 attttctcat catttgaact ttttctacga cgcgatgagc caaagccttc tccaaaaaaa
    27061 ctagaaaata tatctcctaa atcctcaaaa ccaccaaaac ctgagctact agaaccaaat
    27121 ccaccgcctt ttaaagcatc ttttccgtat ctatcataaa tagctcgctt ttcatcattg
    27181 cttaaaactt cataggcttc attaacaagc ttgaatttat cttctgcttc tttatcacct
    27241 tggtttctat caggatgata ttttaaagcc atttttctat aggctttttt tatggtttct
    27301 ttatcagcat tttgcgtgat ttcaagaatt t
//
LOCUS       DARGBD010000015        26994 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.015, whole genome shotgun sequence.
ACCESSION   DARGBD010000015 DARGBD010000000
VERSION     DARGBD010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26994
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.015"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..305)
                     /locus_tag="SFZ04_000515"
     CDS             complement(<1..305)
                     /locus_tag="SFZ04_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HEG8064820.1"
                     /translation="MACGSSNPEDLAKNFTKDLYSGNTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENAAKAKRMGGVKNIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     "
     gene            549..1895
                     /locus_tag="SFZ04_000516"
     CDS             549..1895
                     /locus_tag="SFZ04_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HEG8064821.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANIYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLSIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGIKLNIEKSEHHNEKWFWLNLLVTIGVIGLLISGIIPSYICFM
                     IGLVIILPLNYPNLKIAKKVLDRASAGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGTYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIRDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            2079..4076
                     /locus_tag="SFZ04_000517"
     CDS             2079..4076
                     /locus_tag="SFZ04_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEG8064822.1"
                     /translation="MMYKKQNLPELTLRGLVLGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILKGTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            4150..4953
                     /locus_tag="SFZ04_000518"
     CDS             4150..4953
                     /locus_tag="SFZ04_000518"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEG8064823.1"
                     /translation="MESLYALILGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLSNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            5084..6892
                     /locus_tag="SFZ04_000519"
     CDS             5084..6892
                     /locus_tag="SFZ04_000519"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEG8064824.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ILKYEITKSEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            6889..7407
                     /locus_tag="SFZ04_000520"
     CDS             6889..7407
                     /locus_tag="SFZ04_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEG8064825.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            7446..8537
                     /locus_tag="SFZ04_000521"
     CDS             7446..8537
                     /locus_tag="SFZ04_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEG8064826.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNKGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            8579..12030
                     /locus_tag="SFZ04_000522"
                     /pseudo
     CDS             8579..12030
                     /locus_tag="SFZ04_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            12111..13139
                     /locus_tag="SFZ04_000523"
     CDS             12111..13139
                     /locus_tag="SFZ04_000523"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEG8064827.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQDLLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFNSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYGLASHRHTPEIEEHLSY
                     AAKEKITLQFTPHLVPMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSIDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            13149..13595
                     /locus_tag="SFZ04_000524"
     CDS             13149..13595
                     /locus_tag="SFZ04_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8064828.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRIGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            13599..14444
                     /gene="argB"
                     /locus_tag="SFZ04_000525"
     CDS             13599..14444
                     /gene="argB"
                     /locus_tag="SFZ04_000525"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEG8064829.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCERLGVKSEFKNGLRVSDKATTEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDEDFNTYNINADDAACAIAKALRAEKLAFLTDTAGLYEDFSDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            14448..15635
                     /locus_tag="SFZ04_000526"
     CDS             14448..15635
                     /locus_tag="SFZ04_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEG8064830.1"
                     /translation="MKMDYKEQSHIVPAYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKNVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(15655..16284)
                     /locus_tag="SFZ04_000527"
     CDS             complement(15655..16284)
                     /locus_tag="SFZ04_000527"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEG8064831.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TMERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            16373..16921
                     /locus_tag="SFZ04_000528"
     CDS             16373..16921
                     /locus_tag="SFZ04_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEG8064832.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDKKGKLKDTGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDSALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNNEEI
                     NFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(16890..18263)
                     /locus_tag="SFZ04_000529"
     CDS             complement(16890..18263)
                     /locus_tag="SFZ04_000529"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEG8064833.1"
                     /translation="MMTSKTSLTLLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFDIQEGGVRIDSGNLLELSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLKLVYKEKRLLKKSSLNTIQDYTKEQISKLDENFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(18250..19272)
                     /locus_tag="SFZ04_000530"
     CDS             complement(18250..19272)
                     /locus_tag="SFZ04_000530"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEG8064834.1"
                     /translation="MQRKRIYNPSSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(19275..19697)
                     /locus_tag="SFZ04_000531"
     CDS             complement(19275..19697)
                     /locus_tag="SFZ04_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG8064835.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKSIKKG"
     gene            complement(19698..20306)
                     /gene="pyrE"
                     /locus_tag="SFZ04_000532"
     CDS             complement(19698..20306)
                     /gene="pyrE"
                     /locus_tag="SFZ04_000532"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEG8064836.1"
                     /translation="MNLEQIYKGCGAYLEGHFLLSSGKHSQFYLQSAKVLENPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(20309..20872)
                     /gene="frr"
                     /locus_tag="SFZ04_000533"
     CDS             complement(20309..20872)
                     /gene="frr"
                     /locus_tag="SFZ04_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEG8064837.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDESVKSKESELLKV"
     gene            complement(20882..21253)
                     /gene="secG"
                     /locus_tag="SFZ04_000534"
     CDS             complement(20882..21253)
                     /gene="secG"
                     /locus_tag="SFZ04_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEG8064838.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            complement(21357..22052)
                     /locus_tag="SFZ04_000535"
     CDS             complement(21357..22052)
                     /locus_tag="SFZ04_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEG8064839.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            22213..22848
                     /locus_tag="SFZ04_000536"
     CDS             22213..22848
                     /locus_tag="SFZ04_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEG8064840.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            22845..24728
                     /locus_tag="SFZ04_000537"
     CDS             22845..24728
                     /locus_tag="SFZ04_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEG8064841.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANMSKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     FFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(24751..25722)
                     /locus_tag="SFZ04_000538"
     CDS             complement(24751..25722)
                     /locus_tag="SFZ04_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HEG8064842.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEMDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(25732..26913)
                     /locus_tag="SFZ04_000539"
     CDS             complement(25732..26913)
                     /locus_tag="SFZ04_000539"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HEG8064843.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIIVTSCATESINWVLKGVYFDHILDRERNEVIISSVEH
                     PAVATAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
BASE COUNT         9109 a         3667 c         4742 g         9476 t
ORIGIN      
        1 gcaagaaaaa cattgctgct ttgattatta tcattgttaa ataacactaa aactctgatt
       61 ttagcagaat ctttattgat tgttttttct tcaatttgaa tatttttaac accacccatt
      121 ctttttgctt tggctgcatt ttcagcaaca acttgagtga ttttatcact aacaaatgtt
      181 ttttcttcat cgcttttagc ttcgctaaga tcaatgtaac tcataacaga tttagtatta
      241 ccactgtaaa gatcttttgt aaaattttta gctaaatctt caggatttga agaaccgcaa
      301 gccactaaaa aaaggcaact aaagccaaga aagaaagttt aaaaaatttc atttttttct
      361 tttgatagta taaattaaaa tattcataat tatagcaaaa taattcaaaa ttattttttt
      421 attcttgttt ataatggtta cattagaaaa tatatttttt ttaaaaagct ataaatttaa
      481 acacatataa gttggagtta aaatatccta ttttattatc gaataaaaat gatacaaaag
      541 gataggatat ggaaattttt ttagctttat tgggtttttt ctcgttagga ttgatagttt
      601 ggcttttgct aaaagattat actactccag cactagcttt tataagtgta agtattagtg
      661 tagcttgtat tttacttatt cttgaacggc ttggttttgg cgtgggtgta gctttagggg
      721 ttaaaggagg tgtttttgat attaaaacat tggttgtttt tattaaagat ggagtcaaaa
      781 gcgtaacgga tacggcagct ttgtttgttt tttctatact cttttttagt gttttaaatg
      841 caagtggttt ttttactaaa attttaaatg catttttatc aaaaatgaaa gctaatatat
      901 atcaagtttg cattcttact gtttttattg ctgctgctgt acatttagat ggttcgggtg
      961 cttctacttt tcttattgta atacctgcat tattacctat ttatgagcgt ttaagtataa
     1021 gaaagacttc aatgttattg attattactt cagctatggg ggttatgaat gttattcctt
     1081 ggggtggtcc tactttaaga gcggctacta atataggaat ggatgcaaat ttgctttggc
     1141 accatattat acctattcag attgtaggtt tagtattatc ccttcttttg gcaatttgga
     1201 ttgctaagat agaaataaaa agaggcgcag gcgcaggtaa cttgtcggga ataaaattaa
     1261 atatagaaaa aagcgagcac cataatgaaa aatggttttg gttaaattta cttgtaacta
     1321 ttggggttat tgggctttta attagtggta ttattcctag ttatatttgc tttatgatag
     1381 ggcttgtaat aattttaccg cttaattatc ctaatttaaa aatagctaaa aaagttttag
     1441 atcgtgcaag tgctggtgca atgcttatgt atattacttt aattggtgct gggatattaa
     1501 taggcgtatt tgataaaagt ggtattatgg agaaaatggg tgttttgatt ttaaatttcg
     1561 ttccagatta tttaggtact tatattcctt taatggtagg gatattggct gttccaatgg
     1621 caattatttt ttgtacggat tcttattttt atggagtgat gcctatagtt ttgagtgtaa
     1681 ctaaggcttt tggtgctgaa cctttgacta tagctattat catggtgata gcaagaaatt
     1741 gtgcgacatt tatttctcct gttgtgcctg caactttgct aggttgtggt ttagcagagg
     1801 ttaatattag agatcatatc aaaagaagct ttttttatat atggggtata agtattattt
     1861 gcttgatttt tgctgaggta gctgggataa tataattaaa ataaaagaac ttttgatttt
     1921 tcaatgatta gctcattgtt ttatgatatt tttgagtcaa aaatttataa aaatataagc
     1981 gtttttttgt attattttat tttgctttag agaaaaatta taaatttaaa cttataagaa
     2041 tattttttaa gttgaaagta aaattttaaa acggagaaat gatgtacaaa aaacaaaatt
     2101 taccagaact taccttaagg ggtttggttt tgggaagtat tttaactatt atttttacag
     2161 cttcaaatgt atatttaggg ttaaaagtgg gacttacttt ttcatcatca attccagctg
     2221 tggtcatctc catggcggtt ttgagtcttt ttaagacttc aaatatttta gaaaataata
     2281 tggttcaaac tcaagcttca gcagcaggaa ctttatcatc agttattttt gttatcccag
     2341 ggctttttat gtgtgggtat tggagtgaat ttccactttg gcaaactttt atgatatgtc
     2401 tttgtggtgg cggacttgga gtgcttttta ctataccatt aagaaggact atggtggttg
     2461 aaagcaagct tgcttatcct gaaggtagag ctgcagctga aattttaaaa gtagccaata
     2521 aagatcagag tagtaaaaaa ggaaaacaag gcattaaaga aatagcatta ggctctttta
     2581 tagctgctat ttttagtttg ttaagcaatg gttttaaact cgctgcaagt gagagtaatt
     2641 ttgcttttat ttggaataaa atggcttttg gtttttctat gggatattct ttggcacttt
     2701 taggggcagg ttatttagtt ggtttagcag gtgctatagc tctttttgta ggtatgtttt
     2761 tagcttgggg tatttttact ccctatcttt caaattttga attcgatagt gcaaaaaatg
     2821 ccgtagattt agcttctagt gtatggagtt ctaaagtaag gcttatagga acaggagcta
     2881 ttgctatagc agcgctttgg actttaatag aacttttaaa acccgttatt gaaggtatta
     2941 aagaaattgt taaaaatgtt aaaattacta atcaagaaaa aaatgaaaga acaaatatag
     3001 acctttcttt aaaaagtatt tttatacttt ttgttttaat ggttgtgggt ttatttatta
     3061 ctttttatag ttttgttgaa gatgctaact taagtattta ttatcaaatg ctattttcat
     3121 ttgttggaac tttagtttct gttttaatag gtttttttgt tgcagcagct tgcggatata
     3181 tggcaggact tgtaggatct tcttctagtc ctatttctgg aatcggactt attggtgtta
     3241 ttatttcttc tattgttttt ttggttttag gtgtggaact ttttcaagat cctatgcttt
     3301 ctaaatttgc agtagcatta gctattttta ctactagtgt tattttagct acagctgcta
     3361 tttcgaatga taatttacaa gatttaaaga caggacattt agtcggagct actccttgga
     3421 aacaacaagt tgctttactt gtaggctgtg tttttggtgc tttggctata gttcctgttt
     3481 taaatttgct ttatcaagcc tatggttttg tcggagcaat gccaagagaa ggtatggatg
     3541 cttcatcagc tttagcagca ccgcaagcaa atttaatgag cactatcgcc caaggaattt
     3601 ttcatcacaa tatagagtgg ggttatatgg cttttggtgt atttgtagga attttaatga
     3661 ttattataga taaaatttta aaaggaacac agaaaatgtc tttgccgcct ttagccgttg
     3721 gaataggtat ttaccttccc cctgctgtaa atataccttt agttataggt ggaattttaa
     3781 aatatattgt aatgcaacac ttgactaaaa aatatgcaaa aaattctcat aaagaagaaa
     3841 aacttgcaag ttgtgagcaa agaggcacgc tttttgcttc aggacttata gtgggtgaaa
     3901 gtatttttgg ggtaattatc gcaggaatta ctgtattttc agtaagtatg ggtggtagtg
     3961 aaaatccttt agctttaaat ttagcaaatt ttcatgatag cgagcttttc gcacttatct
     4021 tttttgtggg agttgtatta tatttcatta agcgtattgt taaaaaagat gcttaatttt
     4081 tggggttaaa accccattta atccattctg atataatttt tcttttgcaa ttatcattca
     4141 aggattaaaa tggaaagttt atatgcttta atacttggaa ttatagaagg tctgactgag
     4201 tttttaccta tttcttcaac aggacatatg attttaggta cgactatttt aggtatcgat
     4261 atagatgagt tttggaaaag ctttttgatt atcatccagc ttggttctat tttggcggtc
     4321 atttttgtat tttggcgtaa attgtttcaa gggcttgata tttggttaaa acttgcagtt
     4381 ggattttttc ctaccggagt tatagggctt tttgtggcaa aatacttaaa tgctttattt
     4441 aatggttggg ttgtggttgg aatgctcatt tttggcggtg ttgtgtttat tcttatagaa
     4501 cttgcacata aaaataaaca atatcgtatc aattctttag aagaaataag ttttaaacaa
     4561 gctttttgca taggtatttt tcaatcttta gccatgattc ctggtacttc aagaagtgga
     4621 gcaagtatta ttggtggact tttgctagga tttaatagaa aagttgcggc tgagtttagt
     4681 tttttgcttg ccattccaac gatgattatc gctacagctt atagcattta taaagagcct
     4741 gagcttctta gcaatgcaaa ttctttaatt cctttaggca taggttttat cactgctttt
     4801 attgttgcag ttttagttat aaaatttttc ttaaaattta tttctaaatt cgactttatc
     4861 ccttttggaa tttatcgtat tattttagga tttgttttct tttatttgta ttatagtggg
     4921 attttaaatg ctggaagtga atttaagcta taaataaata ttaaatttat tctaagattt
     4981 ttttaaaaat aagctgaatt tcaaaaataa ttaagtctta gaaagttaaa attagaactt
     5041 tataaacact cacagggtaa gtgagcgaca aagggttaaa aatatggaaa aagaagttat
     5101 tgcgtatttg gacaatgaga caataattga ctctcaaagt gtgaaaaata caaatttaaa
     5161 agaaatttat tttgataatt ctaaagaaag tttagaagta atccgtcatt cttgtgcgca
     5221 tttaatggca caggcgatta agagtttgta tcctgaggct aaatttttcg ttggtcctgt
     5281 tatagaagat ggattttatt atgattttcg tgtggaaagt aagattggcg aagaagattt
     5341 agtaaaaatt gaaaaaaaga tgaaagaact tgctgaagca aagattgaaa ttttaaaata
     5401 tgaaatcaca aaaagcgaag ctttggctaa atttcaaaat gatgatttaa aacaagaagt
     5461 tttattgcgt attcctgatg gagctgtaag tatttataaa caaggtgaat ttgaagattt
     5521 gtgtcgtggt cctcatgtgc caaatacgaa atttttacgc ttttttaaac tcactcgtgt
     5581 tgcaggagcg tatttgggtg gcgatgaaaa aagagaaatg cttactcgaa tttatggtac
     5641 cgcttttgca gataaggaaa gtttaaaaga gtatttaacc attattgaag aagctaaaaa
     5701 acgcgatcat agaaagcttg gaacagagct taagcttttt acttttgatg atgagatcgg
     5761 aggaggtctt cctatttggt tgagtaacgg tgcaagactt agatctaaac ttgaacatat
     5821 gctttataag atccatcgtt tacgtggtta tgagcctgtg cgtgggcctg aacttttaaa
     5881 agcagatgca tggaaaatca gtgggcatta tgcaaactat aaagaaaata tgtattttac
     5941 acaaattgat gaacaagaat atggcattaa gcctatgaac tgtgtgggac atattaaaat
     6001 ttatcaaagt gatgtaagaa gttatcgtga tttgcctttg aaattttttg aatacggcgt
     6061 ggtacatcgt catgaaaaaa gtggcgtttt gcatggactt tttagagtga gagaattcac
     6121 tcaagatgat gcacatattt tttgtatgcc aagtcagatt aaagagcagg ttttagaaat
     6181 tttagctttt gtggataatt tgatgaaatt atttgatttt agctatgaaa tggaaatttc
     6241 aactaaacct gaaaaagcca taggtgatga tgaaatttgg gaaatagcga ctaaggcttt
     6301 aaaagaagct ttagatgaac aaggtttaaa atacggcatc gatgaaggtg gcggggcttt
     6361 ttatgggcca aagattgata ttaaaatcac cgatgcttta aaaagaaagt ggcaatgtgg
     6421 aaccatacaa gtagatttta acctgccaag tcgttttaaa cttgaataca ctgatagtga
     6481 taatgaaaaa aaacaacctg taatgttgca tcgtgcgatt ttaggttctt ttgaaagatt
     6541 tataggaatt ttaaccgagc attgtgcggg tgagtttccg ttttttatcg caccaactgc
     6601 ggtgggtata gtgccaatag gcgaagcaca tattgcttac gcaaaagaaa ttcaaaaaga
     6661 attattagag cttaatatcg atagcgaggt gtatgaaaaa aatgagagct taagtaaaaa
     6721 aattcgtatc gctgaaaagc aaaaattacc tatgatttta gttttaggcg atgatgaggt
     6781 ggcaaagcgt agcgttgctt taagagatag aagagctaaa gaacaaaaaa atcttagctt
     6841 ggacgaattt attaaattag ttaaggagaa aatgagtgag gtacactttt gagtaaagaa
     6901 aaagaagtat tgctcaatga agaaataaga gcggatgaaa tcagatgtgt tggcgatgat
     6961 ggcaaagttt atggtattat cagtagtgat gaagctttag aaattgcaaa tcgtttagga
     7021 cttgatcttg taatgatagc tgcagatgct aagccacctg tttgcaagat catggactat
     7081 ggtaaattcc gttatcaaca agagaaaaaa caaaaagaag caaagaaaaa acaaaaagtg
     7141 attgatataa aagaaatcaa actttctgta aaaattgctc aaaatgatat taattacaag
     7201 gtaaaacatg ctttagaatt tttagaacaa ggtaagcatg tgagatttcg tgtgttctta
     7261 aaaggacgtg aaatggcaac tcctgaagca ggtgtagctt tgcttgaaaa aatttggact
     7321 atgatagaaa atgaagctaa tcgtgacaaa gagccaaatt ttgaaggtcg ttatgtaaat
     7381 atgcttgtaa ctccaaaaaa agcttaatcc acttttgtgg ataaggcttt taaaggtttt
     7441 aaattttgaa agaaaatcct tcttttttaa aagagcaaat tataacttat cttggaaata
     7501 aaagagcact tttaagtttt ttaaataagg gctttaaggt agctaaaaaa gaacttggta
     7561 aagataaatt tagtttttgt gatatattta gtggctcagg tgttgtaagt cgttttgcaa
     7621 aagcacactc aaattatatt ttagccaatg atttagaaga ttattcaaaa ctcatcaatg
     7681 agtgttatct tgctaataaa gacaaagatt tacttcaaaa tataaaaaag tattataaaa
     7741 atttaatcca aaatttagat tttcaaaaag gttttatcag tgagctttat gctccaaaag
     7801 atgatgatga tattaaaaaa aatgaaaggg ttttttatac ttttaaaaat gctttatatc
     7861 ttgatactat aaggcaaaaa atcgaaaatg aaattccaaa agaattgagg catttcttta
     7921 tagctccttt gatttatgaa gccagtgttc attcaaatac tagcggagtt tttaaaggtt
     7981 tttataaggg taaggatggc atcggaaaat ttggtggcga aggacaaaat gcacttaaac
     8041 gcattaaagg agaaatagag cttaaaatgc ctattttttc aaatttttct tgtgaatttg
     8101 aagtgatgca aaaggatgca aacatgcttg caaaagaact tgattttttt gatgtagtgt
     8161 atcttgaccc cccttataat cagcaccctt atagttctaa ttattttatg ctaaatttaa
     8221 ttgcaaatta taaaaaacct gaagaaattt ctaaaatcag tggcattcca aaggattgga
     8281 accgcagtac ttttaataag tcaaaatttg cccaagatgc tttatttgaa cttattaatg
     8341 atttaaaagc aagagtgatt ttactttctt ataattgtga aggttttgta aaaaaagaaa
     8401 tttttttaaa gcgcttaagc actcttggaa aatgccggat tttagagcaa aaatataata
     8461 cttttagagc ttctcgcaat cttaaaaatc gcaacatcca tcttcatgag caactttata
     8521 ttttagttaa aaattagttt ttcgtgctaa aattgcactt aaaaatgagg agggatttat
     8581 gaaactaaaa ttatcttttt gtacattaat ggcatttggt ttttctaact atctttttgc
     8641 ttcagctatt gatccaaagt tattttcaag aatatcttga ttttgccagt aataaaggca
     8701 aatttcaagt aggtcaaatt ggcttttaaa ttttagcaaa aatcctagtc aaaatatctc
     8761 ttttaatgtg tctatgattg atttttctac ttcaaatcgt ggaggaaaat tccaaggaga
     8821 atttaccaat ataggacaat cttatatagt cagcgcttct catatgagta caagtttaaa
     8881 tactgggaag taaataaagg ctatgtgaaa caaggtagtg ttttacactt tggaggggta
     8941 gcaaatagaa tcgtaagctc aagtgataat tttacttaca aaaaagaaaa tgtggatttt
     9001 gctgttttaa aaatgagtaa gattagtctc aataaaagtg caaatttgag taaagattta
     9061 aatcttattg aaaaaaattc tggcgatggt ggagatttta tgaatacaag gatccatttt
     9121 gggatagttg tcaaagtgga aaatgtgatt attcaaaagg taaaggcaag ctttttgata
     9181 gttcgcgtta tgagtacttt gcaagagagg gaagtggtat tgtagcttta ggttttgaag
     9241 atacaaataa agtacccatt aagatttttg attctaatga aatcaattta ggaggttttg
     9301 tcagtttaac tcctaaaaat actgaagata agcgttttaa gttgcaattt cttaattata
     9361 ccaatgataa aagaaattct tttacaagtt cttcaatatc ctgggattct ggaagtggag
     9421 tttatgttta tgataagatg gataaaaatg gtatttagtg ggtgtggtaa gtacgagtaa
     9481 ttgtaatgtc cattttacta tggatatact tgtttacagg ttgattatgc tttgatcaat
     9541 caagtaaaga tcaatgaatt ttaaaatgct cataaagtag ccataggatc tggaacttat
     9601 acacttagta gcgatggttt ggtgaaagat ggtaaaaaaa tagaaaatgt aagtttgatt
     9661 tctaagacta atgtgggtta tgtaagctat aaaaattctt ttgatgataa aaataattgt
     9721 gataagagaa ttgaagaaat gcaaaatagc aaggatttgt atttttctca aaatggaagt
     9781 ataaatttaa atagcgatgt ggatttaggc gctagtgttt taaatttgat aaaaatttaa
     9841 attggcaaat aacaggcgat aaatggctta tacatggcgg aatttatgct gataaggttc
     9901 aaggtagaat ataatgttaa aaccaaaaaa gatgattttc tttataaaat gggtgaagga
     9961 gagcttgttg tcaaaagtca aagtgtggat acaggactta gaatgggtga ggaccaaggt
    10021 aagtcttgag ggtgaaggtt taagttttgg cgaaatttat atgaatggca gaactttgga
    10081 tttatcaggc ttaacattaa attttgatca aattaaaact gactctaata atgtttttat
    10141 cacaagttct taatcaggaa tacatttaaa tttagaaaac aagcaagatt atctttatca
    10201 tggcaatatc ttttcagatg aagctgtaac aatgagtgcc aatacagaca aagctttgat
    10261 ttttgatggt aatatttaca ataaagaagg tgtttttagg acagaaaatg ccaagttaaa
    10321 ttttcaagga catgctagaa tacacgctta tgtaagcaaa gaacaagcta aaaaacttca
    10381 agaacatggt ttaagtgctt taactaagcc tgtaagtttt acacaagaag attgggtttt
    10441 tgttttaaaa gagcttaatt tagaaaaaaa gcgagtttta tttagggcgt taatgtaagc
    10501 ttaaaagtag aaaaccttaa tgctaaaaat tccaaaatag agcttggaag taaaaatttg
    10561 cggatcgatg aaaaagatgg ggaaaatatt attaataaga ctgatgatta ttcttatgga
    10621 gatgttgtat aaacaggagt tggcaaagaa atggcttttg agcaaaagct ttaaaatacc
    10681 caaaatgcta agatagaaaa ggtttatttt agtgtaaatt taaatcttga tcattctgat
    10741 gttactttgc aaaacacatt ttttagtggt aatatcaaag gtatcaatga tacgcaaaaa
    10801 aatcttgcga ttaaagattc tttgtttgag tctcatatac aaatgagcaa tcttcaagta
    10861 gaaaaaagtg ctatttatag gaaagttgat gcaaaaaaaa ttaagtgcaa ataatacaat
    10921 atttaaaatc aatgtggatt ttgaaaattc taaagcagat tatattaatt ctaaggaaag
    10981 cacacaagga gtaaataata ctttagtatt aattttttct taataatcct agtaaaaagc
    11041 gggttaaata tcttgctagc tcatttaaaa gatgaaaata aacatttaac aaaggaattt
    11101 tttactatac caaatgtgag caaggtttta gtacgtatac cccaaatgtt gttttttctc
    11161 ataatgagga aaattttgcc cagagtggaa tttagaaaaa attgattcta agattaaaga
    11221 tgaatatttt tttactaatg ataatactca agctattgta aaaactaaat ctatacttgc
    11281 tcaagctatt ttaggctcca tgataggagt ggaataatat gcataaaaga atgggggaat
    11341 tacgcaataa tccttatgaa agtggtgtat ggttaagaac ttttggatgg ggtacgagtg
    11401 atgagtataa tagtggaaaa tactttgaaa ttcaaagcgg acatgataaa ttaaacgagt
    11461 attcgaattt cgagctttac agtggagtag ggtttttata gtgattttgt tttagatata
    11521 tttattatca aaatgaaata aatgcaaatt ttattccagg aaatcaaggt agattagatg
    11581 ataatgatgg ttcgcataat attatcttaa gtgctgagtt aggttataga aaagcttatg
    11641 ataaatttta tcttgagccg atttggaatt tatcagtggt tatgtaggag ctatggatct
    11701 aaaaggagat attgctagtt taaaacgatt ttcttatatt cctttagtcg taaaaacagc
    11761 attttttata ggaagtcaaa attaaaattt aaattttaga acaggacttg gtttgtatgt
    11821 ggatccgatt aaagcaggag atcaaatctt ggaggatcaa gcaagtcaga gaagatatga
    11881 aggaaaaaag atcaaagaat gtttataaat ttaggaaatg attataagct taacgataaa
    11941 acacgcttta gttttgaatt tgaaaagaca ttttttggcg atttaaatgt agattggagt
    12001 gcaaatgcta atttaagata tagtttttaa ataaaaaata atttaaaaat tgtattttta
    12061 ttttaagctt ttttgtttat aatacttgct tttacattta aaggataaag atgaaaataa
    12121 aagttgggat tttaggagcg agtggttatg caggcaatga gcttgtacgc attttgctta
    12181 atcatcccaa agttgaaatt tcttatttag gttcgagttc tagcgtgggg caaaattatc
    12241 aagatcttta tcctaatacc cctttaaatt tatgttttga aaacaaaaat ttagatgaac
    12301 ttgagcttga tcttttgttt ttggctactc cgcatgaatt tagtgctaag cttttaaatg
    12361 agaatttatt aaaaaagatg aaaatcattg atttaagtgc ggattttcgt cttaaaaatc
    12421 ctaaagatta cgagctttgg tataaattca ctcatcctaa tcaagatctt ttgcaaaatg
    12481 cagtttatgg actttgcgag ctttataaag aagagataaa aaaagcaagt ttggtggcaa
    12541 atccaggttg ctataccacc tgttctatct taagtcttta tccgcttttt aaagaaaaga
    12601 tcattgattt taactcagtt atcattgatg caaaaagtgg agtaagtgga gcaggaagaa
    12661 gtgctaaggt ggaaaatctt ttttgtgaag ttaatgaaaa tatcaaagct tatggtttag
    12721 cttcgcaccg ccatactcct gaaattgaag agcatttaag ctatgcggcc aaagagaaaa
    12781 tcactctaca atttacccct catcttgtgc ctatgcaaag aggaatttta atcagtgctt
    12841 atgcaaattt aaaagaggac ttgcaagaac aagatatacg cgatatttat acaaaatact
    12901 atcaaaacaa taaattcata aggcttttac cgccgcagtc gcttccgcag actcggtggg
    12961 ttaaatcaag caattttgcg gatataaatt ttagtataga tcaacgcaca aagcgtgtta
    13021 ttgtgcttgg tgctattgat aatttaatca aaggtgcagc aggacaagct gttcaaaata
    13081 tgaatttaat gtttgatttt gatgaagatg aaggacttaa attctttgca aatttgtaaa
    13141 ggataaaaat gttaatacga gctatgcaaa aaagcgatta tgaagccgtt tataagcttt
    13201 ggtgtgagat aaaaggcttt gggataagaa gcattgatga tagcaaagaa aatatagaaa
    13261 attttttaga tagaaaccca aatcttagcg ttgtagcagt gattgatgaa gaaattgtag
    13321 gaagcatact ttgcgggcat gatggacgca taggaggatt ttatcatgta tgtgtacata
    13381 aagatcatag aaaaaagggt atagcacacg agatgactaa attttgtctt gaggctttaa
    13441 aagctcaaaa gattaataaa atcgccttaa tcgcttttaa aaacaatgat ttaggcaatg
    13501 agttttggaa acattatggt tttactttaa gagaggatgc gaattattac gatctttctt
    13561 taaatgagta taatcaaacc agctttaatg cttaaggaat gatcatgcaa aaatatttag
    13621 aaaaagccaa tgtcttaatc gaagctttgc cttatatacg caaatttaat tccaagatta
    13681 tacttataaa atacggcgga tcagctatgg aaaatgaaga gctaaagcat tgtgtgatgc
    13741 aagatatagc tcttttaaaa cttgtgggtt taaagcctat cattgtacat ggtggaggaa
    13801 aagatatttc tgctatgtgt gaaagattgg gcgtaaagag tgagtttaaa aacggcctta
    13861 gggttagtga taaagccact actgaagtag ccagtatggt tttaaatcat atcaataaaa
    13921 atttagtcca tagtttgcaa aatttaggag ttaaagccat agggctttgt ggtaaagatg
    13981 gcgcgctttt agaatgtgtg aaaaaagatg aaaatttagc ttttgttggc acgatacaaa
    14041 aggtaaattc gaaaatttta gaagagcttt tagaaaagga ttttttacct atcattgctc
    14101 ctattggcat ggatgaggat tttaatactt ataatatcaa cgctgatgac gcagcttgtg
    14161 cgatcgccaa ggctttaagg gctgaaaaac ttgctttttt aaccgatact gctggacttt
    14221 atgaggattt tagtgataaa aattctttga tttctaaaat tagccttgaa caagctaaaa
    14281 ttttagctcc taaaatagaa ggtggtatgc atgtaaaatt aaaatcctgt attgatgctt
    14341 gtgaaaatgg agtcaaaaag gtgcatattt tagatggacg cgtgaagcat tctttattgc
    14401 ttgagttttt tactgatgaa ggtataggca ctttggtggg ttaaaggatg aaaatggatt
    14461 ataaagaaca aagtcatatt gtccctgctt ataagcgttt tgatatagtt ttagaaaaag
    14521 ggcagggggt ttatcttttt gatgataagg ctaaaaaata tcttgatttt tcaagtggta
    14581 taggtgtttg tgctttagga tataatcatg ctaaatttaa tgctaaaatc aaagctcaag
    14641 tggataaact tttacatact agcaatttat attataatga aaacatagcc gctgcagcta
    14701 aaaatttagc caaagctagt gctttagagc gtgttttttt tacaaattct ggtacagaaa
    14761 gtatagaagg agcgatgaaa acagctagaa aatacgcctt taacaaaggt attaagggtg
    14821 gacaatttat cgcttttaag cattcttttc atgggcgtac tttaggggct ttatcgctta
    14881 ctgctaatga aaaatatcaa aagcctttta aacctttaat ttcaggggtt aaatttgcaa
    14941 aatataatga tatttcaagc gttgaaaaac tggtgaatga aaaaacttgt gccattatct
    15001 tagaaagcgt gcaaggagaa ggtgggataa atcctgcaaa taaagatttt tacaaagcct
    15061 taagaaagct ttgcgatgaa aaagatatat tattaatcgc tgatgaaatt caatgtggca
    15121 tgggtagaag tggaaaattt tttgcctatg agcacgcaca aattttgcct gatatcatga
    15181 cttcagctaa ggccttaggt tgtgggctta gtgtgggtgc ttttgtaata aatcaaaagg
    15241 tagcaagcaa ttctttagaa gcaggcgatc atggtagtac ttatggtgga aatcctttag
    15301 tttgtgcagg agtgaatgca gtttttgaaa tttttaaaga agaaaaaatt ttagaaaatg
    15361 tcaataaact cacgccttat ttagagcaaa gtttagatga gttgataaat gaatttgatt
    15421 tttgtaaaaa acgcaaaggc ttagggttta tgcaagggct gagtcttgat aaaaatgtaa
    15481 aagtagctaa ggtcattcaa aaatgccaag aaaatgcact tttactgata agttgcgggg
    15541 agaatgattt gagattttta cctcctttga ttttgcaaaa agaacatatt gatgaaatga
    15601 gtgaaaagtt aagaaaggct ctaaagagtt tttgataaat tttgtaaaaa aagtttattc
    15661 tttcccatct actataggca caaataaaca ttcttctaaa atttcttttt gtaaatttgt
    15721 gccatttttt ctaaggcgtg tgatgaattg tttgccattg tgtaaaatag gagcaactaa
    15781 aataccatca tcgcttaatt gatcgagtaa aatttcagga atttgtgtcg cataagcaga
    15841 aaataaaatc ctatcataag gagcataatt tttccagcca ttttgtccat catcaaattt
    15901 tacattgata ttaaaaagtt ctaattctct gaaagtttga gcggcttttt tggctaaatt
    15961 ttctatgcgt tccatggtaa aaacacgcct tatgactttg cttaaaatcg cagcttgata
    16021 gccacttcca caacctatct ctaaaatact atcagcattt ttaaaatcta aagccatagt
    16081 cattttagct acagttaaag gtgaactaat ccattgagaa tttgctaaag gcaaagcatc
    16141 aaggcgataa gcatgggctt ttaaaggaga aaaaatttca cgcggaattt gacaaaaagc
    16201 attaaaaagc tcttcattga taaaaacttt ttgtgcaatt tcttcagcca tattttgaca
    16261 tcttttttgt tcaaatgcgt tcattacttc tcctataaat ttaaataaaa attgtaacta
    16321 aaaaagttga aatagagtta aacttagcta tacttaaata aaaaggaaaa aaatgcttat
    16381 aaaatttaaa aatcatagtc ccaaactagg tcaaaatgtt tttgttgcag agggcgctaa
    16441 aatcatagga gaaatagaaa taggagatga aagtagtatt tggtttaatt gtgttttaag
    16501 agccgatgtt aattttataa aaattggcaa aagaaccaat attcaagatc ttagcacagt
    16561 tcatgtttgg catagggaat ttgataaaaa aggaaagtta aaagatactg gttttcctac
    16621 gataatagga gatgatgtaa ctataggaca taattgcgtt atccatgctt gtgtgataaa
    16681 aaatcgtgtt ttaatcggaa tgaatgctgt tatcatggat agtgctttga tagaagaaga
    16741 tagcatagtg ggtgctggaa gcgttgtaac aaagggtaaa aaatttccgc cacgctcttt
    16801 gatacttgga aatcctgcaa aatttgtgcg tgaattaaat aatgaagaaa taaactttct
    16861 aaaacaatcc gctttaaatt atgtggattt taaaaacgag tttttaaaag atcttcagtg
    16921 atattttgaa gtttaggcga gagttttact tcaaatttca caaaacgatc aagatctaaa
    16981 aaattctcat cgagttttga aatttgctct tttgtataat cttgaatagt atttaaagat
    17041 gactttttaa gaagtctttt ttctttgtag actaatttta aaagttcttt gcgttctaaa
    17101 ttttcatctt gatttgggtt ttcgtcaaaa acataaagct catcaaaaag gattttttgc
    17161 gtgtttttat cataaaccct aaaaagcttt ttaaaatgag gtagggttga tttttcgtta
    17221 ttttcgctaa ttttgatttt aggttttatg ccttgatctt ctaaggctgc gagtttataa
    17281 acgcaactaa aaatagggtc acttgaagca gtgatcaatc tttcgcctac accaaagata
    17341 tcaataggtg cattttgttc tttaagtttt ttaatgctcc attcatcaag ggcgttagaa
    17401 actatgattt tacatttttg aagtcctgct tgatcaagtt cttgtctgat tttcaaactc
    17461 aactcaagta aatttccaga atctattctc acgccgcctt cttgaatatc aaattcttta
    17521 aaaactttaa tcgcattttt aagtccgcta tttagacaat cataagtatc gatcaaaaaa
    17581 acaggatttt ttggataaat tttcacataa gctttaaaag cttcaagttc attttcaaac
    17641 atttgcaccc aagaatgtgc catagttcca ttgataggga tattataaat ttttcctgct
    17701 aaagtacaag cacttcctat gcaacctcct ataaaagctg ctcttgctcc ttttaaggct
    17761 gcttcacttc cttgtgctct gcgtgaacca aattctaaaa ttttactgtc tttagctgca
    17821 cgcacgatac gattggtttt ggtagcaata aggctttggt ggtttaaact taaaagtaaa
    17881 aaagtttcta aaagctgtgc ttctatggtt gtagctttaa tacatagcaa aggttcgttt
    17941 ggaaaaatca cttctccttc acgcatagca taaatttcac ccttaaattt aaagttagct
    18001 aaaaaatcta aaaattctgt atcaaaaata ccttgttttc ttaaaaattc tatatcttct
    18061 gcatcaaaac tcaaattttc aacaaagtct aaaatatctt caagacctgc aaaaatagca
    18121 aaagatcctg aatctggaat ttttctaaaa aatatatcaa aataacaaat ttgatctttt
    18181 ttattgtttt tgaaatagcc ttgagacatt gtaaattcat aaaaatcaca aagcaaggtt
    18241 aaagaagttt tagaagtcat caaagcttat actaccctta gaataattcg ttactttact
    18301 ttcaaagaaa ttgctctttt gatcgttaaa ttttgaaaaa tcatctaccc atttaatagg
    18361 atgttttgca ttgtataact tatctaaatt gatcgcgctt aatctttgat ctacaagata
    18421 atggatatat tcttctatga tatcatcagt aaagcccatg atttgatttt gagtgatgta
    18481 tttaccccat ttgatctcaa gatctccagc ttttttaaac atatcataaa ttttattgat
    18541 attttcatca tggaataaat caggtctttc tttgcgtact gaattgatca tattttgaaa
    18601 taataaaaga tgtgtgattt catctctttg gataaagcgg atcatttgtg ctgaacctag
    18661 catttttcct gcacgtgcaa gtgcgtaaat ggcagtaaaa ccactataaa aatatactcc
    18721 ttctaaaatt tgatttgcca ccatagccaa aagaagttta ttatcatcta catcgcctgc
    18781 taattcttca taaatgcttg aaataaagtc atttttttca cgcaaagttt catcatgctt
    18841 ttccatttca taaatcaaat ctgtattatc gcaaatcgct tctaccataa cagcgtaaga
    18901 ttttgaatgg tttgcctctt cataagcttg gcgtgccaaa accgcattga tttcaggagc
    18961 tgtgatgtaa gggttgatat tatctgctaa attattggtt tgaaaactat ccatagaaat
    19021 aagctgactc caaaccaaat catacattct tttttcacct acagttaaat tacagcgata
    19081 atcaagtgca tctttagttg tatccacttc ttttggaaac caagtatttg cctccattaa
    19141 atcccaaagt tttaaagccc aggtatattt tgccttagtg aaatttaaaa ttccatgtgg
    19201 gttaccatca aaaattttac gatctcctag ggtttcgttt gaacttggat tgtaaattct
    19261 ttttctttgc atttttaacc tttctttatg cttttagtag ctatacaact ttgagttaaa
    19321 atatcgtgta aatttaaacg atcttttctt acaaaactga caaataaacc aaagagtaag
    19381 ccaaaactta taataaatat cacatatctt agtaaaattc taagaaaact tagtttcttt
    19441 cccgttttta tatcaataag atataaatca tatgctttaa gacctgggct ttgtgccttt
    19501 tttgttaaaa aaatagcttg aatcaaacca aataaaaaag tacataaagt tgtgataaaa
    19561 tggttgttta aaaaagcttc tttagagcct aatagaaaat aaaataaata caaaatagga
    19621 acataaataa gaaaaatatc tataagcaaa gctctaaatc ttagccatct agagctaatt
    19681 tttgctttag ttttcattta atttccacgg cttcctggtt ttatagcttt actccctttt
    19741 ttacaaagtg gacaatttgt ttcatcataa atttcaaatt caaaatttcc tagagtaaag
    19801 agtggtaaat tttcaggtaa tttcgcatta tcttttcttg gagattttaa attttctact
    19861 gcacaaaaac cacgatttgc caatgctgca aaacctacaa caatgccacc taaactttca
    19921 atgatttttg cactctctaa agcactacca cctgtagtaa tgatatcttc acaaattata
    19981 aatttttcac cctttttcac ctcaaaacca cgtcttaaag tcatttcttt atttactctt
    20041 tcagtgaaga taaaacgttt actacaagct ctcgcaagct cataacctgc taaaattcca
    20101 cctaaagcag gagaacaaat gctatcaaat tctatcttat agcttgcaat aatctttgca
    20161 agttcatcac aaagttttgc tgctaatttt ggattctcta aaacttttgc actttgaaga
    20221 taaaattgcg aatgtttacc tgaacttagt aaaaaatgcc cttctaaata agcaccacaa
    20281 cctttataaa tttgctctaa attcatcgtt aaacctttaa aagttcactt tctttacttt
    20341 ttacactctc atcaattttt gttgtatagg tgtcggtaag tttttgcact tcatcataag
    20401 ctttttttgc ttcatcttcg cttattgcct tatctttttc tagtttttta actgcatcgt
    20461 tggcatcttt gcgtatattt cttatagaaa cttttgcctt ttcacccata gctttagctt
    20521 gttttacatt ttcttctctt tgctctctag tcatcggagg gaaaaataat tttacacttt
    20581 cgccgtcatt gtttggattt acaccgatat ttgcagctgc aatagcgctt tctatggttt
    20641 ttagtaaagg tttttcccaa ggagtgatgc taatagttga agcatcactt gctaaaacag
    20701 ttgctacttg atttaaagga gtttgagttc cataataatc cactgtaata tgatctaaaa
    20761 tatgggtatt aacttttcca gttcttaaag tggtgaagtc tttttttaag gcttctaaag
    20821 atttttcact ttgggttttt tgtttgttaa aaatttcatt tagcattatc atttcctttg
    20881 attatttact tgaattaaca tcgcttggaa gttgtggtgc acttggagcg atagaatttg
    20941 tgtttggggt agcaggcaca ataggagcac ttggaatagt agtattgttg ttttctactt
    21001 taattttctc tgctagagag tctttgctag ctttattgta taaataacca agaccaatag
    21061 tatttgcaat aagtaaaatt cccataacaa aggtaaattt tgccaaaaat ccagctggtc
    21121 ctttggcgcc aaataaactt tcattgcttc cactataagc tccaagtcct atacttgaac
    21181 ttttttgaag taaaactgct atacaaataa ctacaacgat gataaattgt aaaatgatta
    21241 aaagagtgat cattgaaaat tcctaaaagt taatttttaa atgattattt tagctaaata
    21301 aaacttgaaa agttttgaaa cttgaaaagt ttttgtgaga aaaatcccac aaaaatttat
    21361 ctgctattga agcttcttaa gatattaagt aaagatacga aaagattaac aaaatcaaga
    21421 taaagtgcta ctgcaccttc gattggagtt tcataatttc cgcggataat attttgcgta
    21481 tcataaagaa tgtaaaatga aaataatatt gcagctactg ctgaaatagc tagattaact
    21541 atactgcttt ggaagaaaag gtttagtaaa gatgctgcta caataacgat taatactata
    21601 aataaagctt tacccataac agtaaaatct ttttttgtat tcatagcaaa tacactaagt
    21661 cctgcaaaag caactgttgt taaagcaaaa gcttgagcga tgataattcc tccagctggt
    21721 agagctaaca ctgaaataag caaaggtgta agcgttaaac ctgagcagaa agtaaaacca
    21781 aaaagcaaaa caagatttaa tggagcctct ctttttttcc attgcaaagc aaataaaagt
    21841 ccgatttcaa cagcaaaaag gatccaaaaa gttacttgtg attgtataaa aaatgatgct
    21901 aaagcaaaaa ttcctacata cgcacctact gttgcagcta ataatgaagc agcaaaaagt
    21961 tgataagttt gtttaataaa aatacttaat tcgcttgagc gtgtattttc aaattctttt
    22021 gatcttgagt agtctctatc ataaagactc ataaaattct ccttgcaaaa ttgttagatt
    22081 ttttaaaatc ttgagcgaaa tctaacatat tagactaaat aaaaagttaa tttatataat
    22141 atctttatga ttaaatgaaa tctttgctga aattttgtta taatttcaag attttagttt
    22201 caggttggtt ttatggaaaa tcttattagt ggtgcgatta agtttatgca agaagacttt
    22261 aaggagcatg aagaactttt tgaaagtcta aaaaataagc aaaatcccca tactcttttt
    22321 ataggttgtt ctgattctag agtaattcca aatttgatca ccaatacggg tccaggtgag
    22381 ctttttgtaa tacgaaatat tgcaaatata gttccacctt atcgcattgg ggaagattac
    22441 ttagcgacaa cttcagcaat agagtatgct ttaaattcat tgcatattaa aaatatcgtc
    22501 gtttgtggcc atagtaattg tggaggttgc aatgctcttt attattctga tgaagagtta
    22561 aataaaattc ctaatgtgaa aaaatggctt actatgttag atccgataaa aaaagatgta
    22621 atgatttttg caagagacga tttggctatg cgttcatggc ttacagaaaa attaaattta
    22681 gtaaattctt tgcaaaatat acttacttat ccaggcgtgc aagaagcttt agatgaagga
    22741 aaaatagaag tacatgcttg gtattatatt atagagacag gtgaaattta tgagtatgat
    22801 tttaaagcaa aaatttttac tttaatacag gataggaaag ttcaatgaaa aaaattattt
    22861 ttagtttatg tttttttatt ttataccttg gagcacaaga atttaaattt attgatgcaa
    22921 atatgagtaa agaggatgaa ggaatttatg ctttagttga aaaatatgtt gatcttaaca
    22981 atcaaattaa agaatttaag aaaaacaatg atgaaaattc aagcactttt aatggtattt
    23041 taagtgaatt tgaaaaagac aaaaagacta ttttagcaaa aatacccgat atgatagtag
    23101 gacaaaagat taatgaagag gcagtggcta gatttttaaa agcaaaagaa aaattactag
    23161 atgttcaaaa aaagaatatt aataagcctt atatttatac agatgccact cttaatctag
    23221 tttattttaa tattgtggaa agtttttatt cttctttgtt tgaagtggaa aaacttttta
    23281 aaaatacagc aagcagtgaa gatttgattg ctactgttga taaggcaatg gaaaatttac
    23341 aaaattcttc taatgttaat ttagatagtt ttaaaagcaa aattacaaat tcagaagaat
    23401 tagaaaaaat taccctaaaa gaaagatata tcagtaatgc tgtagattct tattctgaaa
    23461 ttcttaagta tttacgctca aatgcagatt tgcttgaaag taattatatt ttttcattac
    23521 tcgagcttca agtttggata gatcgtataa atgaggcaat tggggtaagt tttgttaata
    23581 tcggaaaaat agtaatttct gctttggttt tagtattttt tatatcttta agacgttttt
    23641 ttgcaaatat agtatatttt ttccttgttc agttttttta tagaaataaa aatgatgtag
    23701 atgatattaa agtcattttt attgagaata ttaaaaaacc cgtaggcttc ttgttgattg
    23761 tctatgctat ttctctttgt cttactatag caacttatcc tgcacctttg agtgtaaatt
    23821 taagtaattt ttttcatata gtttatgcag ttttaattgc atggcttatt ttaagaatgc
    23881 ttgatggtta tggcgtggta ttggtttcta aacttgctca aaaaagtgga aaaaaagaag
    23941 ttgtaaattt aattattaaa attttatatt ttgtcattat tattatagct ttattatata
    24001 ttcttgctca acttggtttt aatatttcgg ctattattgc atctttggga attggtggtt
    24061 tagctgttgc tttagcggcg aaagatatca ttgcaaattt ctttgcttct atactcttac
    24121 tttttgataa tagctttaat caaggagatt gggtagaggt ttcaggcata gaaggaaccg
    24181 tggttgaaac aggacttaga aaaactacta ttagaacttt tgataattgt cttgtatttt
    24241 taccaaattc aactattatg ggagctaata tcaaaaattg gagcaaaaga cgcatgggtc
    24301 gccatgttag aatgtatttg ggtgttggtt atgatgctac tcctgaaaaa ctagaacaat
    24361 gtgtaaaaga tctaagagaa tttttgcata caagtgattt agtagctcac gatgaggata
    24421 gcgcattaaa atatggcgat catacaacaa aatatcgtca aaatcttgta tctattaatg
    24481 atttagaagg ctataaaaat gcttgttatg tggctttaag tgaatttgca gatagtagta
    24541 ttaatataga gctttatttt tatatcaaag aaataggtgg aaaagatttt agagaagcta
    24601 gacaaagttt aatgcttgag tttatgcgta taattgaaaa aaatggttta acctttgctt
    24661 tcccaagtcg tagtatttat atagaaaatt taccacccct tgatttgcaa gcaaaagcta
    24721 taaaatagca agattttatc ttgctatttt ttaaaccggc ataacgcgta tatttgggct
    24781 taattcttct tgtaaaatcg tttcaatagc ataaagtgtt gcaccacttc cactagaaca
    24841 accactacaa gcaccaagat aacgaatata aacatcaatt gctgcacctt cagccttttg
    24901 tatgtcaatc acttctaaat cccctccatc attatgaagc atagggcgaa tttcagcatc
    24961 taaaacactt tcaactgctt ttaattgtcc tactacagtc atttcatcaa aagccacatc
    25021 acttttcatt gtatttttga gtttttctct atccatctca gctctagttt cagctaaaat
    25081 atctacaagg taataatctc ttttttcatg tccgcctggt ttgatacagg atttgcaaaa
    25141 agcacccgct ttagtatatt gtgtgatttc ttctacgcta tgcaaatcat taagtttaat
    25201 cacctcttta atagttccaa gacttaccct agcacactcg caaactataa tctgatcttc
    25261 aaaatcttca ggacttatgc ctttataatg cgctgctgct tgtttgatta catcataagc
    25321 cataaccgaa cagtgcattt tttgaggtgg aacagctgga gtttctggat tatcacgcat
    25381 agcaaattcc acatctaaat ttgtgatttt tactgcttca tctacagttt ttcctataca
    25441 aagatccacc atagtatcac tacttgctat agctgtacca caaccaaaac ttttaaattt
    25501 tgcatcgata attttatcag ttttttcatc tacaagccaa aaaagtctta ctgcatcgcc
    25561 gcaactttct gcgccaaaat cagctacgat caattttgca ttgcgtgctt tagcatcttc
    25621 ttcactaaat tctcccatat gttgaggatt attcattcta tcttgaactt tttgtgaata
    25681 ctcatcccaa atggatccac caattaaact attttttccc atttttcatc cttatttgta
    25741 attatttgga ttataagcat aagtacaaga aattgctctt aatctctgtg ttgcattttt
    25801 aatttgtttt gctgcataat caatttcttc ttcagtgtta aaacgtgaca aagaaagcct
    25861 taaagctgta tgtgctaaat catgttccgc accgatagct tccataatag gattgctttc
    25921 taaagcttca cttgcacagg ctgagcccgt acttgcagct ataccatttt tatttaaatc
    25981 ccaaagcatt gcttcgcctt caactccttt aatacttgct aagattgtat taggcacacg
    26041 gtgttctctt tttccaacca ctgttgtatc aggcaaggct aaaatttgat cttctagttt
    26101 atctcttaaa cggcgtatat gagaatcttc aaaatcaagc atagtatttg caatacgcaa
    26161 agcctcgccc atagccacta tataaggcac atttaaagtc ccgcttctac gaccacccat
    26221 gtgttctcca ccgtgtaaaa gtggagtaag cttaagtcct ttttttataa aaagtccacc
    26281 cacacccttt ggtccatgaa atttatgtgc cgaaaatgaa gcaaaatcaa ctcctacttg
    26341 agttaaatta acctttattt tacctactgc ttgagtagca tctgtatgaa aaagagcacc
    26401 aaattcatgc gcaagttctg ccatcgcttt aatatcaaaa atcatacctg tttcattatt
    26461 tgcccacata acacttacaa gtgctgtttt atcgctaatc actttacgca aatcttctac
    26521 agtagaaact ccttcttcgt ttacaggaag ttctatgact tttactccaa gactttttaa
    26581 aaaataagca gcagtagcaa cagcagggtg ttctacacta gaaataatca cttcattgcg
    26641 ctctctatct aaaatatgat caaaatacac acccttaagc acccagttaa tgctttctgt
    26701 cgcacaggag gttacaatta tgtcatctag gtcatttgct ccaagtcctg cataaagttt
    26761 atccaaagct tctcttaagg caggatgtgt tgcgctacca tattgatgaa ggctatttgg
    26821 atttccatac atatccttta aaaaaggtag catcaactca taagcattag gatcaagcat
    26881 tgtcgttgcg ttgttatcta aatatacttt cactttaaaa tccttaattt atccttaatt
    26941 ttaattagga tattttttat ctttatttga aaatggataa taacaaaaat ttat
//
LOCUS       DARGBD010000016        26430 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.016, whole genome shotgun sequence.
ACCESSION   DARGBD010000016 DARGBD010000000
VERSION     DARGBD010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26430
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.016"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..363)
                     /locus_tag="SFZ04_000540"
     CDS             complement(<1..363)
                     /locus_tag="SFZ04_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3971 domain-containing protein"
                     /protein_id="HEG8064844.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISSQTHSSDNASTEILKITKNLKYLYTFVKEIDIQN
                     LNIKDNHVRILFKDNEFFI"
     gene            278..1279
                     /gene="mltG"
                     /locus_tag="SFZ04_000541"
     CDS             278..1279
                     /gene="mltG"
                     /locus_tag="SFZ04_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEG8064845.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            1360..1791
                     /gene="flgB"
                     /locus_tag="SFZ04_000542"
     CDS             1360..1791
                     /gene="flgB"
                     /locus_tag="SFZ04_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEG8064846.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDKKELELAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1801..2295
                     /gene="flgC"
                     /locus_tag="SFZ04_000543"
     CDS             1801..2295
                     /gene="flgC"
                     /locus_tag="SFZ04_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEG8064847.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            2302..2598
                     /gene="fliE"
                     /locus_tag="SFZ04_000544"
     CDS             2302..2598
                     /gene="fliE"
                     /locus_tag="SFZ04_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEG8064848.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2605..4413
                     /locus_tag="SFZ04_000545"
     CDS             2605..4413
                     /locus_tag="SFZ04_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8064849.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(4410..6178)
                     /locus_tag="SFZ04_000546"
                     /pseudo
     CDS             complement(4410..6178)
                     /locus_tag="SFZ04_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867673.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
     gene            complement(6182..6616)
                     /locus_tag="SFZ04_000547"
     CDS             complement(6182..6616)
                     /locus_tag="SFZ04_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064850.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDEQTLLEPIKMDVYPKF
                     CDLIDEKIRQFKENVQNTNLALKNSDQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMNEFEKLKG"
     gene            complement(6616..6933)
                     /locus_tag="SFZ04_000548"
     CDS             complement(6616..6933)
                     /locus_tag="SFZ04_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEG8064851.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KSY"
     gene            complement(6930..8756)
                     /gene="htpG"
                     /locus_tag="SFZ04_000549"
     CDS             complement(6930..8756)
                     /gene="htpG"
                     /locus_tag="SFZ04_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEG8064852.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDASK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLAKIINKAFS"
     gene            complement(8829..9197)
                     /gene="crcB"
                     /locus_tag="SFZ04_000550"
     CDS             complement(8829..9197)
                     /gene="crcB"
                     /locus_tag="SFZ04_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEG8064853.1"
                     /translation="MLNTLLVVGFGGFIGAILRMFSINLVNKFFPYSISLGTLFVNVL
                     GSFIIGLLFSYAQNKCLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYPHFALN
                     IILNVFLCLFAAWLGFIIFK"
     gene            complement(9191..9883)
                     /locus_tag="SFZ04_000551"
     CDS             complement(9191..9883)
                     /locus_tag="SFZ04_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEG8064854.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(9864..11060)
                     /locus_tag="SFZ04_000552"
     CDS             complement(9864..11060)
                     /locus_tag="SFZ04_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG8064855.1"
                     /translation="MKILLTLIFSVVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPLSDENNDFESNVDDPFVAKGSLVLTNNEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYTLWFLAVLFGALFVWRKNYIILALAVVCFVLSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(11057..11704)
                     /gene="purQ"
                     /locus_tag="SFZ04_000553"
     CDS             complement(11057..11704)
                     /gene="purQ"
                     /locus_tag="SFZ04_000553"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HEG8064856.1"
                     /translation="MKVAIIRFLGTNCEFDTAYAFEKLGVKTQIIWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQNLRVVSNGNAFLKNFKKDEIINLPIAHGEGNYYADEAILKELQDKDL
                     ITLKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDIGLKMLKGFLF"
     gene            complement(11706..11951)
                     /gene="purS"
                     /locus_tag="SFZ04_000554"
     CDS             complement(11706..11951)
                     /gene="purS"
                     /locus_tag="SFZ04_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEG8064857.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELIIEKE"
     gene            complement(11960..12670)
                     /locus_tag="SFZ04_000555"
     CDS             complement(11960..12670)
                     /locus_tag="SFZ04_000555"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEG8064858.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12672..14006)
                     /locus_tag="SFZ04_000556"
     CDS             complement(12672..14006)
                     /locus_tag="SFZ04_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEG8064859.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISNLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDKATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGTTKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            14133..14423
                     /locus_tag="SFZ04_000557"
     CDS             14133..14423
                     /locus_tag="SFZ04_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HEG8064860.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAIEENDIQSIKELNKAIDMFMK"
     gene            14535..17108
                     /locus_tag="SFZ04_000558"
     CDS             14535..17108
                     /locus_tag="SFZ04_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8064861.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDN
                     ASILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYITDRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(17136..19067)
                     /locus_tag="SFZ04_000559"
     CDS             complement(17136..19067)
                     /locus_tag="SFZ04_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEG8064862.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYAAYLFTSVDTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPEKTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(19064..19615)
                     /gene="maf"
                     /locus_tag="SFZ04_000560"
     CDS             complement(19064..19615)
                     /gene="maf"
                     /locus_tag="SFZ04_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEG8064863.1"
                     /translation="MLILASNSISRANLLKTAKIDFKQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKTKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(19615..22143)
                     /gene="alaS"
                     /locus_tag="SFZ04_000561"
     CDS             complement(19615..22143)
                     /gene="alaS"
                     /locus_tag="SFZ04_000561"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEG8064864.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFITKREVL
                     DTQKFFNLNLSFIKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGVKKIKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDAPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKIDEALKQSLETIEKAL"
     gene            22258..23331
                     /locus_tag="SFZ04_000562"
     CDS             22258..23331
                     /locus_tag="SFZ04_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEG8064865.1"
                     /translation="MNFINLQAQYLAYKDEINAKIESVLSSSSFIGGTKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRALDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEISKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQIDPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            23336..24202
                     /locus_tag="SFZ04_000563"
     CDS             23336..24202
                     /locus_tag="SFZ04_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEG8064866.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            24199..25110
                     /locus_tag="SFZ04_000564"
     CDS             24199..25110
                     /locus_tag="SFZ04_000564"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEG8064867.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDILANLDNKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLSDFN"
     gene            complement(25170..26405)
                     /locus_tag="SFZ04_000565"
     CDS             complement(25170..26405)
                     /locus_tag="SFZ04_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEG8064868.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDIAINAFIVSIISAACGFLSWVVLEWLIHKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
BASE COUNT         9371 a         4420 c         3711 g         8928 t
ORIGIN      
        1 tataaaaaat tcattatctt taaataaaat acgcacatga ttatctttta tatttaaatt
       61 ttgtatatca atctctttaa caaaagtata tagatatttt aaattttttg ttatttttaa
      121 aatctctgtt gaagcattat cagaagagtg ggtttgtgat gaaatttcgg aattttgagt
      181 ctcatttata gtgatatttt ttgctcgtac aattaatttt ttatctaatt taatatataa
      241 ttgttccaat tttaaaaaat caaattggat actagagatg acaattccat ttttaagcac
      301 tataaacaaa gctaatataa gcacaacaaa aaatacaaca atatataaaa ttttcttttt
      361 catacgcaac ttctttttga tatttatttt ggggattttt tattatctaa ctcagccttt
      421 aaaaagcaat tctgtggtat ttattcccca aggttcaatt tctcaaatta taacatattt
      481 aaagcaaaat aaatatcaga tgagtaatat tgataaatat attttatttt ttttaggaca
      541 ccctcaatca ggctggatca acataggtac aaaagattta aatagagctg aatttctaca
      601 taaactcact attgctaaag cagcacttca aaccattact cttatcccag gagaaacaag
      661 cgtaatcttt ctagaacaag cagccaaaca acttggactt gataaagata tacttttaaa
      721 agaatttcaa gctcaagctc cttatgatga aggagttttt ttaccagaaa cttataaaat
      781 cccgaaaggc attacagaaa atctactcat tcaaatgctt ttaaaccatg ctgaaatttc
      841 caataaaaaa acttctgaga aaatttttgg tgattataat ccaaaaaaat ggcaccaata
      901 tatcatcatc gcttctgtaa tacaaaaaga agctgctaat gacaatgaaa tgcctatagt
      961 tgcaagcgta atttacaatc gacttaaaaa aggtatgaaa cttcaaatgg atggaacttt
     1021 aaattatgga atttattccc atgtaaaagt taccccacaa agaataagac aagataatag
     1081 ctcttataat acctataaat ttacaggatt gcctaaagaa gcggtttgta atgtttcttt
     1141 agctgctatt cgtgcagcta tttttccttt aaagacagat tatttatatt ttgtgcgtga
     1201 taaaaatact ggagttcata tttttagcac aaatatagat gatcacaata aagccataaa
     1261 tttacaaaaa ggaaaataat ttttgatatt tttatacaaa atagttaaat tggaacagta
     1321 tttgcttgtt aatattaaaa attataaaaa ggataaaaaa tgattaaccc atttaaatca
     1381 aaagaactag tcactggtgc tttagcgggt agaaatctaa gaaatcaact catcaatgcc
     1441 aatcttgcaa atgttgatac tcctttttat aaagcaagag atattgaatt tgaaacagct
     1501 ttggtaaatc gtgcaaatga aattttcaaa aaaaatgaca aaaaagaatt agaattggca
     1561 gtaaccgaag aagggcatca aaaaccttgg aaatttcctg atcctagtaa atctactatt
     1621 tacttaagag atggtcattt ggcaagaaat gatgcaaata ctgttgatct agatgtagaa
     1681 actacagaaa tgagtaaaaa tacagttatg ataacagctc ttgatggagt tttaagaaga
     1741 caaagcaata tctttagttc tatacttgat gcaagctcta aattaagtta aaggtaaatt
     1801 atggcatact taagtgattt tgatattagt ggttatggtt taagtgctca acgttttaga
     1861 atgaatgtta ttagctctaa tatagctaat gcaaacacta caagaacagc tgaaggtggg
     1921 ccttatagaa gacgcgaagt gatctttaaa gcaacagatt ttgataagct tttaaatgag
     1981 caaattaaca aagataataa ttttttaaaa tatgaaaatc ctttaaatga tccaagttcg
     2041 ccagaagaag ctaaacctgc tattcaaagt gttgtagtgg ataaagtggt cagagatgac
     2101 aaagattttc gtatgaagta tgatccaagc catcctgatg caaatgctga aggttatgta
     2161 gcgtatccaa atgtaaaccc tgttattgaa atggcagatt tgattgaagc tacaagagct
     2221 tatcaagcca atgtaagtgc ttttacaagt gcaaaaacta tagctcaaag tgcgattgat
     2281 ttattaagag gataataaaa aatgaacaat attaatgatt taagattaaa taataatatt
     2341 tcaaatacca acaaaagtca aaattccaca ggaattggtg atgaatttgc caagatgctt
     2401 aaaaatgaaa tcgatgattt aaataaagca caagaaagtg gagaagctgc aatgacagac
     2461 attgccacag gacaagtaaa agatttacat caagcagcta tagctatcac taaagctgaa
     2521 agcagcatga aatttatgct agaagtaaga aataaagcaa tcagtgctta taaagaaatc
     2581 acaagaactc aaatttaaac cctaatgcaa gaatataaaa aaaatagggt ttcaaaagtt
     2641 gcctttgcct actgcatggc acttttgttt atgattattt ttatcagctc tacttttttt
     2701 cttacatcaa aacgtcatat acctaacact gaaaaagatc aatacgctct tgctctaaga
     2761 ggatcgatta taaccaaaga taattttact atcacaagtt ctaaacaaat ttatcgtgct
     2821 gaaattgatc ttagaagcat taacaaagat aaatttgatc tatttttaaa gctttttcaa
     2881 atttatagtg ggataagtaa cgatcaagta gcagatatta aaaaaagaat gcaaaatcaa
     2941 aaaaaacgct cttataattt tgttctttta caaaacttag actccaagca agcaagctac
     3001 cttaaagatc ttgctaaaaa actttatata caaggttttt tcaaagcttt tacaaataac
     3061 tcaggaagag ttgaaacaag aggattaaat atcatcgaac atgaagaaga tagaatttac
     3121 atgtcaaaag attcttttac tcctattatc ggttatacta aaatgatatt agatccagaa
     3181 agtggaattt taaaaaatat aggagttaaa ggtttagaaa aatactacga tgcatgtcta
     3241 agccctgttc aaaatgaaaa aattcaagga cttaaagata taggtggaaa tattatttta
     3301 aatctaaatt cactacaaca aaaaaagatc aatggttgtg atttatattt aaatctttct
     3361 ttaaaactgc aaaaaagtat agagaaagct atagatcaaa gaaatgagga tttaaaagcc
     3421 aatgaaatca tcgttggggt aatggaaagt aaaacaggaa gaattttagc tctagcaagc
     3481 tcaaggcgtt atgacccaca aaatcgcgga aaggatctat cagttcttaa tgcaagcgct
     3541 atagaatacg gctatgaagc aggttctgtt atcaaacctt ttatctttac aacagcctta
     3601 agacttggta aaataaaaat ggatgaagtg attaatactt atggcggttc ttacaagcta
     3661 ggacgtttca ccatcaaaga cgatcacaaa atggacaaaa tgactatgga ggaagttata
     3721 agatattctt caaatatagg catgatacaa attgctaaaa ggcttaacaa tatagaaatc
     3781 gtatcaggac ttaaaatatt taaatttggc gaaaaaagtg gtattgatct accctatgaa
     3841 caaaaaggag aaattccaaa tcctaagcgc ttaagagata tagaaaaatc tgttttaagt
     3901 tatggttatg gacttaaaac aacctttata caactccttg cagcttataa tgttttcaac
     3961 aatgatgggt tttatatcac accacgttta gctgaaaaat tctatcaaaa tggacgcttt
     4021 acaaatcttg atgatgatgt aaaaaaagaa aaaattcttt ctagcgaagc cgctaaaacg
     4081 atgcaaaatg ttcttataaa tgttatagaa aaaggaacag gaaaaaaggc aattacacaa
     4141 ggtattattg caggaggtaa aacaggaacg gcaagaatag ccgaaagaca aggttacacc
     4201 tcaaatcgct acaatgcatc cttttttggt tttgcaaatg atttaaatca cgcctatacc
     4261 ataggagttc tcgtaagaca tcctactaaa ccttatagtt attatgctgc acaaagtgct
     4321 ttgcctatgt ttaaagatgt tgttgatatt ttaatcaatg aagaatttct aacgcctata
     4381 caagacaata accaaactag cacaaacaac tagtttgata tatctttaga aaatatcacc
     4441 tcaacagcac ctataagttc ttcagcaatc ttagcagcaa aagttgtatc attaagtatt
     4501 gaaattcctt cagctgttgt gatttttctt actgaaataa gatgttcaac attgctcaag
     4561 gttaaagtat cgatttcttt taaaatttct tttccttttt gaagattttt aataatcaaa
     4621 taaagctttt cacgatcttc aacaactcta agctcttcga tacttcttaa aagctctcct
     4681 aaattcgatc taattttatt gtactctaaa gccaaaaatt cattagaaga actagaatat
     4741 ttcttaatat ttgcttggat aatttttaaa tttttagttg tttcggctaa atttttagct
     4801 gccatcttaa aggtaaaaat tttatgattc tttgtttcat cgttaatata aacttgtgct
     4861 ttagttgaaa aatcgataat agcttcaaaa agaaccttta tcctagtttg atacaaatag
     4921 tccaaatcca catttttact aaaccacttt ttattttcta aaatttcttt aaaactttta
     4981 tcactttgta tatctttacg actaaaacct atagcatgag caacaattgc ataggtattg
     5041 ttataaagat gctcgctttc tttccttaaa gcttcgatgg ctgtgtcact aaacttaacc
     5101 aaactactat caagatataa aggcttgtct ttattcttat ctttaggagc ttttactatc
     5161 ttatttaaaa aaagaacaat ttgaggagta aagaatgaaa aaagcacaac accaattaaa
     5221 ttaaacaaag tgtgaaataa tgctactttc aaagctatat cttctatgtt taatacaatg
     5281 gataaaaaat taagaaaatg tataaaataa ggaaaaataa gcactattaa aaaagctata
     5341 ccaaaattaa aaatacaact tgcaaacgct aatttctttc cttcaatatt ggtacttaaa
     5401 gaagctaaaa cagccgttac aactcctcca acactagtac ctaaagttgc tgctaaggaa
     5461 ttttcaaact gatttgtcct gcaagtaaag cagcgacaat aatagccatt gtagctgtgc
     5521 ttgattgtat aactcctgta agcaaagcac ctaatcctaa aaaaacaaaa actcctttaa
     5581 aaccagcaaa atcaaaacga gaaagatcaa ttatatgttt aaaattttca aaaccacttt
     5641 taatataatc cacacccaaa aagaaaaatc ctataccaat aaaaatatta cccaaacctt
     5701 ttaaaacact atctttttga aagaaaaata atactccaat aatcaaaagt gggatagcta
     5761 gcattgaaat tttaatattt gtcaaaccaa caatcagcca agaacttgcc gtatttccta
     5821 aatttgctcc aaaaataatc cctatgcccg cacccaaaga aataagccct gcactcaaaa
     5881 aagaaatcgt aataatagaa actaaagttg aagattgcat aattaaagta cttaaagtac
     5941 caaaaagtat actttttatc tttgtatcgg ttgacttcgc taaaattttt tcaagcaaac
     6001 caccactaaa agctttaaaa cctataccta aattagtcat tccaataaga agtattgcca
     6061 ctcctgctaa aagattggca agctcgtcat aacgaattaa aataaaaatc agaactaaag
     6121 taaaaatact ccatgaaata aatttaaaat attttaaaga atttctttcc tcttgcaatg
     6181 cctaaccttt tagtttttca aattcattca tcagaaattc tcttaaattt tcggcttctt
     6241 cttcgccttt ttctagatac tcaagcaata aattttctaa ttcctttaaa aaagaaaaaa
     6301 gttcattttg ccagatacta tcgtttttat tgcttaaatt catggtttgt atgaaagtca
     6361 actctctgct taaatcccca agtttttcta aaaattcatc tttttgatca gaatttttta
     6421 atgctaaatt agtattttgg acattttctt taaattgtct gattttttca tcgattaaat
     6481 cgcaaaattt cggataaaca tccattttaa taggctctaa aagggtttgc tcgtctatat
     6541 ttaaagtaag ctttttaaca gcaaaataaa gagctaaaaa agacaaagct gctatgagta
     6601 aataaattcc tagcattaat aactcttaag ggctagcatt ccgccatcta aattgatgct
     6661 ttcaagtccc aatttttcag ctataaattc agctgcaacc atgcttctat ggccactacg
     6721 acaaataaaa gcaagttttt tactttcatc tcttttgctt tgaaattcat ctaaaaattt
     6781 agcatttaaa agcccttgat tatcatataa agccacacat tgcgcattag gtaaaatacc
     6841 ttcttcccat tctaaaggag tacgcacatc aaaaatttga tatgcgttta aatcttgctt
     6901 tgtccaaaga cttgcaggga tattttctat catgaaaaag ccttattgat aatttttgca
     6961 aggcttgcat taaattcagc aggattatcc actcccatac cttcgcttag ttttgccata
     7021 tttaaaacta gggttgctat atctgcacta aaactttcgt tgtttttaag acctgtaaaa
     7081 atagcgtgct ttggattgat ttctaaaata ggtttgaaat tttgttcttg acccatttgt
     7141 tttaagagtt gttgcatagc aaaatcaggt ttatttttat cgtaaactat acaacttggg
     7201 ctatctttca agcgactggt tagtcttaca tcttcaactt gatcttttag aagttcttta
     7261 aatttagcta caagtggagc aaaagtattt ttttcttcat cgcttagttc atttttatct
     7321 tctacttgat taatggctac aaatttcaaa ccttcaaatt ctagcatagg agttactaaa
     7381 gaatcaatct catcatccat gagtaaaact tctatatttt tttgcttata ttcttcaagt
     7441 aaaggagagg ttcttaataa actttcatta tttcctgcta tataaaaaat ttccttttgc
     7501 tcgccttgaa ggtcattttt atactcttct aaagagcgta aattttcacc tttggtgctt
     7561 ttataaagca tgagttttaa aagactgtct ttttctccgc caaaaccata aagtccttct
     7621 tttaatacct taccaaaggt tttaaagaaa gataagtatt tttctttatc attgttttta
     7681 agtttttcaa gttcacctaa aatcttttta acgctagctt ctttaacacc ttttaaaatt
     7741 tgattttctt gtaaaatttc acggcttaca ttaagtggta aatcttctac atcgataatc
     7801 ccacgcacaa aacgcaaata agttggtaaa agttctttat catcatcgct gataaataca
     7861 cgttttacat aaagttttaa gccgctttga taatccacac ggaataaatc aaaaggtgca
     7921 ttttgtggta tgaaaaataa ggaattgtat tctaattttc cttcgctttt agtgtgaaga
     7981 taaagtaaag gtttgtttga atcatgaaaa ttttgctcat aaaatctttc ataatcttct
     8041 gctttaaggc ttgatttttg cattctccat aaagcgttgg ctttattgat ttgagaaatt
     8101 ttaagttcag tttttccttc ttcttcgccc tctttagcag gagtaaattc ttctttttcc
     8161 atgaaaattg gaaattgaat atgattagaa tatttttcta taatgctttc gattttataa
     8221 gtattagcaa actcatcatc ttttaaatat aaagtaatgc ttgttccttg ttcttctttg
     8281 cttgcgtcat taatctcata accatttgca tcggaactcc aaagataagc tttatcatct
     8341 aaagcttttt tacttaaaac ttcgattttg ctagccacca taaaagcaga ataaaaacct
     8401 actccaaatt gtcctatgag ttgagaatct tttttagcat caccgctcaa attttctaaa
     8461 aagcttttag tgccgctttt tgctatggtt ccaagattgt tgataagatc atctttatcc
     8521 atacctatac cattatcact aatacttaaa gtttttttat ctttatcaat tttgatttca
     8581 attttaggtt caaattttaa gcttttatat ttatcatcac ttacgcttaa aaaattaagc
     8641 ttatctaaag catcgcttgc atttgaaata agttctctta aaaaaatttc tttattagaa
     8701 tataaagaat gtatcataag ctgtaaaagc tgattgactt cggtttgaaa ttgcatttta
     8761 acttcctttg taatttttta aagtggtatt ttagcaaaaa atacaaattc taaagtaaat
     8821 ttaaagattt atttgaaaat tataaaacca agccatgcgg caaataagca aagaaagaca
     8881 tttaagataa tatttaacgc aaaatgagga taatttccac tttgcaaaag aagtaaattt
     8941 tgataagaaa aagtagaaaa agttgtaaaa gctcctaaaa aacctgtact tataaagctt
     9001 ttaagtaaag gagataaaca tttattttgt gcataagaaa acaaaagtcc tatgataaaa
     9061 gaacccaaaa cattaacaaa aagagttcca aggctgatag aataaggaaa aaatttattc
     9121 actaaattaa tagaaaacat tcttaagatt gctcctataa atcccccaaa accaacaact
     9181 aaaagggtat ttagcaaagc ttagctcttt cttgatcgag taattcttgc attttttttc
     9241 tagtgttttc aagccatttt tcatcatttg tatcgactaa atccatacaa atgattttaa
     9301 gcactccgct gcttgcacta aaactttttg tgtctaaaat ttttgcagaa tccacaatta
     9361 aaatgggttg aactttaaga tttaattttt cacttaaaat ttttgctcca ctttgaaatt
     9421 taagcatttt ttcattttta gatctagttc cttctggaaa aatagccaaa accctatctt
     9481 cactaattct ttcttttgct tcttttaaaa ctcgtaccaa atcacgcgga ttttttctat
     9541 ctatacaaag aagttttggt tttttcatag caactttgaa aataggaatt tctcctaatt
     9601 cttttttggc aatccagcat aaatttttag gatataattc ttctaaagcg atgatatcta
     9661 aagcactttg atgattcatt aaaatcatct gagcttgcgg attaaaagtg ccaatgattt
     9721 cttgtttata agagatagta tatctttgaa atttagccca aattttgcgg attttccaaa
     9781 gtgtgttttg agattttgta aagcaaaaac aaaaaatcac caaagcaaca cttaaaacaa
     9841 aaaaaatcca aaaataaaga gctttaattt ttttgtaaat catctttatt aacccaacct
     9901 atttttccat cagaaaacag tactttaata taattttgtc ttttgcccaa aacttctact
     9961 ttttcatctg catttgccgt ataaaaataa gttgaaggct ctgtaggtaa gattttagcc
    10021 ctagaaccag ccttgataat tgcattttga gtattggtat ctacaagaaa actaagtaca
    10081 aaacaaacaa ctgccaaagc cagaataatg taattttttc tccatacaaa taaagctcca
    10141 aataaaaccg ctaaaaacca taaggtatat tgtttataaa tatttaagtc tttatttaca
    10201 ggatttaaat cactctgagt gctgatctca tcgtcactaa tttttagttt taaatttata
    10261 ttttcaagct ttttactgtc cttattgaaa tacgaaaatt caaaatttgt tttacttaat
    10321 ggcaaaatag cataataaaa agcactagaa gcattaaagt ccccttttaa attttcaata
    10381 ccttgctttt gaattccttc tataaaaaag cttttaagat ttgtattggt tgcgtttagt
    10441 tctaccatca taatgatatt agcatcatca aaataactcg ctttaacttt tttaatttcc
    10501 aaagaacttg ccacaaggtg tgaaaaatct ttattggata aagtattttc aaatttgata
    10561 ggattaagat tgatatcagc ctcttgaaaa gcttcattat ttctaagaag tttgatagaa
    10621 attttactca aactagcatt tgaatttttg gcttcaaacc ataaagttgt tttatattcg
    10681 ttattgataa attcccattt tgcatctgga tttaaaaaag ataagttagt tttttctacg
    10741 cttatgttaa aatcaaattt tgtattttcc gtagtgcgag catagatcgt aataggaaaa
    10801 acttctccaa catataccct acttggatat tcattatttg taagaaccaa actcccttta
    10861 gctacaaaag gatcatctac attgctttca aagtcattgt tttcatcact tagcggaata
    10921 ttttgataaa ttttttgttc ttcttggggt aatttttgta attctttttg catattttca
    10981 tcttggccgc taaatacaga aatttcaccc ctgccaaaca atacaacaac actaaaaatt
    11041 aaagttaata aaattttcaa aataaaaagc ctttaagcat tttcaaacct atatcattac
    11101 ctaggacttt ttcacaagca cgctcaggat gtggcatgag tccaaagatt tttttgtttt
    11161 catcacaaat tcctgcgata tcaaatacag aaccatttgg atttggctcg tattttaaag
    11221 taataagatc tttatcttgc aattctttta aaatagcctc atcagcgtaa taatttccct
    11281 ctccatgggc aattggtaaa ttaataattt catctttttt gaaatttttc aaaaaggcat
    11341 taccattaga aactactctt aaattttggt tttttgagat aaaactaaga ttgttattat
    11401 gcttcattgc accttttaaa agaccgcttt caagtaaaat ttgaaaacca ttacaaatac
    11461 ctaagatata tcctcccttt tttgcatgat taaaaacacc ttgcatagca ggagcaagtt
    11521 ttgcaatagc tgcacatctt agataatctc cataagaaaa tccgcctggc aaaacaacta
    11581 aatctgcatc aaattctttt tcttcatgcc aaataatctg cgtttttact ccaagttttt
    11641 caaaggcata agctgtatca aattcacaat ttgtccctag aaatctaata atagcaactt
    11701 tcattttact ctttctcaat tataagctca taatcttcaa tgacgctatt taccaacaac
    11761 tcttcacaca ttttttttac ttgttctttg gctaattttt catctttctc atcaagagaa
    11821 attttgattt gttttgctat ttttacttct ttaacactat taaaatttaa agaatgcaaa
    11881 gctttttcca ccgctttgcc ttgtggatct aaaaccccat tttttaaaga aatatttaca
    11941 ataacttcca tatttttcct taatttaata ttctttttaa aacttcttca taagccattt
    12001 ttacattacc tagatcttga cgaaatctat ctttgtccaa tttttcatta ctaaatttat
    12061 cccaaaatct acaactatca gggcttattt catcggctaa aacaagttca ttatctttag
    12121 ttaaacccag ttcgatttta aagtcaatca gccttaaatt tttattgtca aaaaatggag
    12181 ttaaaataga gttaatcttt ctagccatat ttttaatttc actaatttga gcttcatttt
    12241 gcactaaatt taaaatcaaa caatgctcat cattgataaa aggatcgcct aaggcatcat
    12301 ctttaagaca aaattccacc aaagcaaaag gtagcacagt gccatcttta atgcccagtc
    12361 tttttgtaag agaacctgtt gcaacattgc gtactataac ttcaatagga acaattttac
    12421 attttttaac cacttgttct gtatcgctta tagtttctac caaatgggtt ttaatcccat
    12481 ttttttcgag caaatgaaaa atttcagtac tgattttaca gtttaatgca ccttttccac
    12541 tttcattgcc tcttttttct gcattaaaag cagttaaatc atctttaaac tcactaatta
    12601 gtaaattttc atcatcagtt ttgaaaagtt ttttaccttt tccttcgtaa agcatttctt
    12661 tttttgtcat tttattgtcc ttgtttgata tttaaaattt taatagtatc aatagctgat
    12721 tttaactgcg cgtcatcatt gatttgtttt tgactgatta gatttttatt gtctttattt
    12781 tcttgtttat cttctttttt atttttatct attttttcaa gctcgctttc taaatgttgt
    12841 tttaagtcgc tttcttttat agaaaaacca tcttcttgag tatttacttt acctggaaaa
    12901 acttcaatat caggttttac acccactgct tgaatagtac gcccgcttgg aagataatat
    12961 cttgcgatag taagccttaa agcttcagtt ttattaatag gtatgatttg ctgaacacta
    13021 ccttttccaa aagtattttc acccacaata acaccgcgtt taagatcttg taaagctcca
    13081 cttacgattt cacttgcact agcacttcca ccatttacaa gcacaaccaa agaagcatta
    13141 gaaattttgt ttttaggatc ggctttatat tcttgatttt cacttgcgat gcgtcctttt
    13201 tgagaaacaa taacaccttt atctacaaat aaatttacaa gtcctatggc ttgatttaaa
    13261 agtccaccag gattatttct aagatctaaa ataactcctt taacattagg atatttttta
    13321 agttctttac ttgccacatc tacaacattt ttatcaaaat ttgtaaccct aagataaaga
    13381 atgttttcat tttctatcat ttttgcataa acactttcta tcttaataat ttctcttgta
    13441 agtgtaacat caaaaggttt tgttgtacct tttctaaaaa tggttaaagt gatttgagtt
    13501 tttggcttac cacgcatttt atctacagca tcattgagat taattcctaa agtggcctta
    13561 tcattaattt ttaaaataat atctcctgat tttatccctg ctttatctgc tggtgttcct
    13621 tctataggag aaacaactgt taaagcgcca tctttcatac ctacggttat accaaggcca
    13681 ccaaattcac cattggtttg aattttcata tcattaaaat ccttttcatt taaaaaagaa
    13741 gaatgcgcat caagattgct taaaagtcct gataaagatt tatccaccaa attgctgata
    13801 ttttgatcat ccacatagta ttgctctact atagcaagag tttttgtaag cttatctaaa
    13861 gcttctaggc gtttttgaac ctgctcttct ttttgatcaa ctttagcttg taaatgactt
    13921 gttaaaaata gacataaaat aaaagtagtg gcaaagcctg caagacccgc aaaaaatcgt
    13981 tttgttttca aaataagctc catcattgag ttttagttta attagtttaa agagtaaatt
    14041 ttaataaaaa ttgcttaaaa cttcgtaaat aaatttaaat tcttaaaaat atgttaaaat
    14101 agactaaaaa ttccaaaaag aaagttaata caatgtgcca agaaaaacat actcatacac
    14161 attctcaaaa acatcttaaa gcagtttgca atcgtctaag tagaaccata gggcatttaa
    14221 gcgctattaa aagaatggtt gaaaatgaca aagactgtag tgaaatttta atccagcttg
    14281 ctgccgtaaa agccgaagtt aacaatactg caaaagtagt tttaaaagaa catttagctc
    14341 attgtatggt acatgctata gaagaaaatg atattcaaag tataaaagaa ctaaacaagg
    14401 ctatagatat gtttatgaaa taatctaaaa ttagtcattt gtcctattat ttaaaaaatt
    14461 ttactcaatt aacttgacat tatatgacta aagttatata atagcaagta tataaactaa
    14521 ataaaggata aaacatggca aatatacaag attttttaac tgataatatg ctttcaaacc
    14581 ttgaaagtgc agcatcttta gctatacatt ctaaaaataa tgaagttgta cctttacatc
    14641 ttttatgggc tttaagcgta gataatgcaa gtattttaaa tcaaatttta aataaattaa
    14701 atatttctaa agaagcctta gagcttgaaa ttaaaagcag aatttcaaaa cttgcaacga
    14761 gttcaaatgt aaaccgtgaa aatatacgct tttccaatga acttataaat tcattagaaa
    14821 atgctaaagg attaatgagt gctaatggag atagttattt aagtgtggat acttggctta
    14881 taagtgaaag tcaaaaaagt cctattaaag aaattttggc gcaattttta gatttaagag
    14941 aatttcaaaa agagcttgaa agtctaagag cgggacgaaa aatggatagc aaaacaagcg
    15001 atgaaacttt agatagctta aataaatttg gtatagattt aaccttaaag gcaagcgagg
    15061 gtaaacttga tcctgttata ggcagagaag aagaaatcga acgtttaatg caaattttaa
    15121 tacgcaaaac caaaaacaac cctatacttt taggtgaacc aggcgtagga aaaacagcta
    15181 tagtagaagc tttagcacaa agaattatta aaaaagatgt tccaaaatct ttgcaaaata
    15241 aaaaagtcat cgctcttgat atgagtgctt taattgcagg tgcaaaatac agaggagaat
    15301 ttgaagatag attaaaagct gtggttaatg aagtgataaa aagtgaaaat atcattcttt
    15361 ttatcgatga aattcacact atagtaggag ctggagcgag tgaaggcagc atggatgcgg
    15421 caaatatttt aaaacctgct cttgcaagag gtgaactcca taccataggt gcaactactt
    15481 taaaagaata tcgtaaatat tttgaaaaag atgcagcctt gcaacgccgt tttcaacctg
    15541 taaatgtagg tgagccaagt gttaatgagg ctttggctat gttaaggggt ataaaagaaa
    15601 agcttgaaat tcatcataat gtaaccataa atgatagtgc tttagtagcc gcagctaaac
    15661 tttcaaagcg ttatataaca gatcgttttt tacctgataa ggccattgat ttaatcgatg
    15721 aagctgcagc tgaactaaaa atgcaaattg aaagcgaacc aagttcttta agaaaagtac
    15781 gcaaagatat agaaacttta gaagttgaaa atgaagcttt aaaaatggaa aatgatgaaa
    15841 aaaatcaaaa aagactcgat gaaatcgcaa aagaactagc taatttaaaa gaaaaacaaa
    15901 atgccctaaa ttcacagttt gaaaatgaaa aaagtgtttt tgatggcata agtgctaaga
    15961 aaaaagaaat tgatctgctt aaaaatgaag cttctttggc taaagctaga ggtgaatttc
    16021 aaaaagcagc cgagctagag tatggaaaaa ttccaagtct tgaaaaagaa gtagaaatct
    16081 tagaagataa atggaaaaaa atgagtgaaa atggagtttt acttaaaaat caagtggatg
    16141 aggatttggt tgctggaatt ttaagcaaat ggacgggtat tagcgtgcaa aaaatgttaa
    16201 cttctgaaaa acaaaaattc ttagaagtgg aaaaacattt aaaagaaagt gtcataggac
    16261 aagataaggc cttaagtgct ttagctagag ccattaaacg taacaaagca gggcttaatg
    16321 cggacaataa acctatagga agctttttat ttttagggcc aacaggggta ggaaaaacac
    16381 aatcggctaa agctttggca aaatttttat ttgatgatga aaaagcaatg attcgctttg
    16441 atatgagtga atttatggaa aaacatagtg tttcaagact cttaggtgcg cctccaggat
    16501 atataggaca tgaagaaggt ggagagctta ctgaagccgt acgaagaaaa ccttatagcg
    16561 tacttttgtt tgatgaagtt gaaaaagcac ataaagatgt atttaatgtg cttttaggga
    16621 ttttagatga tggtagagca accgatagca aaggtgtaac agtggatttt aaaaatacca
    16681 ttatcattct aacttctaat atcgcctcaa gtgccattat gaatttaagt ggaaaagaac
    16741 aagaagatgc ggtaaaaaat gagttaaaaa atttctttaa acctgagttt ttaaaccgtt
    16801 tagatgatat tatcaccttt aatccacttg gaaaagatga agcttatgaa atagtcaagc
    16861 ttttatttaa agatttacaa atgagcttag aaaacaaggg aataaaagca agtttaagcg
    16921 aaaatgcagc ccttttaatc gctaaagatg gttttgaccc tgattttggt gctagacctt
    16981 taagaagagc tatttatgat cttatagaag ataaattaag cgatatgata cttgctgatg
    17041 aacttcatga aaatgatagc attatcattg atgcaaaaga tgatgaaata atcatcaaaa
    17101 aagcttaatc attttgaaag tagatctttc tactttcaaa atataatctc gctttcatta
    17161 aatttcatat ttgcttttgg taatggtgat ttggtggtat aataagcact ttctccttta
    17221 taatttccac gataaactcc attaggaatg ctaaattttc tagttgtatc agggaatttt
    17281 tctatatatt gagttaaaaa ttctctaaac acaggagcag ctgttctagc cccaccttct
    17341 gtataacgca taggcttgtt gttatcattt ccataccaaa tgattgcttc tatttcaggc
    17401 gtaagtccac aaaaccaagc atcaacactt ttattcgttg ttcctgtttt tcctgctatt
    17461 tctatatctt ttactcttgc attacgccct gtgccttttt caacaacatt tctcatcata
    17521 tctaaaacca gaaaactttg cgcttcatcg ctgactttac gctcatttga gttaaattcc
    17581 atgatggttt taccggtttt atcctgaact tgtctgataa tttgaggatc tttaatcgta
    17641 ccatagttcc caaacatggt ataaaatttc gaatactcca aaggagaaat accaaaactt
    17701 cccaatacga ttgataaatt aggcggtata tctttaaatc caaattccat tagcttagag
    17761 taaagaacat ccagccccat atcaagtgcg agattaatgg tagctaaatt tcttgatctt
    17821 gttaaagctt cttttaaggt aattaaacct aaaaatttac ccccttcatt tttaggtttc
    17881 caatcctcat tattacccgc tccaccttca aaaattctag aaatatcagc aatttcactc
    17941 ataggcgaat atcctaaatt aatcgccact tgatacacaa aaggtttaaa agagcttcca
    18001 ggttgacgca tactttgagt agcacggtta taattacttt tttcataatc aaccccgcct
    18061 accaaagcta aaacatcacc actttgatga tttaccacga ccatagctcc gtttaaagtg
    18121 cttaaatttg catctttatc gcgttttact atctcatcat aaccaaattt taaagcattt
    18181 tgcgccatat tttgaacatc taagtctata tttaaaatga ttttatatcc acctgttttt
    18241 aagtctttga tattagggct taattgttta atcacttcat ctacaacata aggagcagca
    18301 ttttgagtaa gcgtatcatc ataaacttgc ggaatttctt taatggctgt atcataatct
    18361 gcttttgaaa tccaacctag attatacatt cttgaaataa cattatttgc ccttgagatg
    18421 gaaagatcta aatgctttgt aggatcataa ctgctaggtg cttttggcat acctactagc
    18481 atagcaatct ctttaaggct tagttcattt aaatttttat gaaaataccc caaagctgcg
    18541 gtttttactc cataataccc atgtccaaaa aagataaaat ttaaatacct ttctaaaatt
    18601 tgttccttgg ttaaaatggt ttccatttta taagcaagca aagcttctcg aattttacgc
    18661 gtaatagttt tttctggagt taattccgtg tttttaataa attgctgagt aagagtggaa
    18721 gctccttcca tggtttttcc accgcttttt atgattttta cggcagctct aaaaatggcg
    18781 tcgatattaa ctccattatg ttcaaaaaag cttgtatctt ctatagcaac caaagcttct
    18841 ataaggcgtg gaggaagctc ttcataagga gcataaaaac gatgttgttc aaaaatatta
    18901 gccacaagct taccatttct atcataaatt tgtgttgtaa gaggaggttt gtattcttta
    18961 aaagtataac cctcagtatc aacacttgtg aaaagataag ccgcataaat aaatccagct
    19021 ataaacaaaa gagtaaaaaa tgaaaaaata tattttaata ttttcataaa taagccttta
    19081 aagtttggat atcaagccct aaagcagtgc ttagatttcc tacttgttgg gtgatgaaat
    19141 tttgatgaaa accctcacac ataatacaac ccgccttgcc tttataaaga tcattttcta
    19201 cataatctct taaagcattt tcatcaaaat ttttaaaata aagcgtagtt tttgaaagag
    19261 aaaaaactct tttttcaggt tttacaagca aaaaagccga taaaatactt gcatactttc
    19321 cattttgcaa ggcaagcatt tcataagctt cttttttatc ctttgttttg gtaagaattt
    19381 tttcatctat acaaactata ctatctgcaa aaagcaaatt ttggttttga aaatctttgc
    19441 ctaaagtact taaaaattgt ctttcttttt caagaactat tttttgaaca tataaaaaag
    19501 gtgaaatatt tttatttaaa ttttcatcat aatcaaaact aacttgctta aaatcaatct
    19561 ttgcggtttt aagcaagtta gcccttgaaa tggaatttga agcaagaatt aacattaaag
    19621 tgctttttct atcgtttcta agctttgttt taaagcttca tcaattttgc ttaaatcttt
    19681 tccacctgca gtagcaaaat catctcttcc accgccattt ccgcctaaaa tttgcgccgc
    19741 ttctttaacc aaagctcctg cttttaaagg tgcatcttta acaccagctg ctaaagtgat
    19801 tttttcatct ttcacttgga taagtaaaat caccgcttta gcaaatttgt ttttaaaatc
    19861 atcaatcata gctttaatat cgccattatc tatacgcttt acgcaaattt caacaccttg
    19921 gatattttta gaatcaagct ctgttttact tgagttttta agctcatttt ttaaacttaa
    19981 aatttcattt ttaatttttt taaccccgct taaaatatca ttatttttaa gttcatcttt
    20041 tactttagaa agttcttcga gttgattttt tacaaattct aaagccgctt tagaaactac
    20101 agcttcaatg cgtctcaccc cagcactcac accactttct ttaactatgt aaaaacttcc
    20161 tatttgagca gtatttttaa catgagttcc cccgcaaagt tctttgcttt cacctaaagt
    20221 taaaacacgc acattgcctt ggtatttttc attaaacaat gctatagcac cgcttttttt
    20281 agcttcttct aaaggcatat tttctaagat agcttcgctt gagtttataa tcatttcatt
    20341 gactcttttt tcaatgcttt ctagctcttc tttgcttaaa gctttatgat gagtaaaatc
    20401 aaatcttagc ttattgcttt caaccaaaga tcctgcttgg cttacatgag aacctaaaat
    20461 ttctcttaaa gcatggtgta aaagatgagt ggctgagtgg tggcgtgcga tttgctctct
    20521 tttttctgta tcgattcttg catgaactat atcgccaact tttagttctt cgcctgcttt
    20581 tataaagcta agattgagat taaaaaactt ttgcgtatct aaaacttcac gcttagttat
    20641 aaacccacta tcagcacttt gtcccccact tgttgcataa aaaggtgtgt tttcaagcat
    20701 cacccaaccc gcatctttaa gggtggaaac ttctttaaaa tcttcatcta aaagggctaa
    20761 aattttactt tcgcattctg ctttttcata acctacgaaa tgattttctc caaatttttc
    20821 aagtaagttt ttaaaatctc cgcttgcagt tttatctcca cttcctttcc aagaagcctt
    20881 agcgcgtgct ttttgctcat tcatgaaaag ttcaaatttt tcttcatcaa ctttaagatt
    20941 tttttctctt agcatatcag ccgttaaatc aagcggaaaa ccataagtat cataaagctt
    21001 aaaggctact tctccgctaa aaatttcttt agtgttttta agctcttcat taaaaatttc
    21061 aatcccattt tctatagtgc ttaaaaatct ttcttcttca aggcgaattt gttcttttat
    21121 aaagtctttt ttctcattaa gataggtata atgtccgccc attaaatcgc acacaatatc
    21181 aactagttta tacataaaag cttgtttaaa acctagcaaa tatccatgtc ttaaagcacg
    21241 acgcaaaata cgacgcaaaa cataacctct accttcttta tcaaaactta ccccttgtgc
    21301 aagcaaaaat acacttgatc ttatatgatc agctatgact ctaaaacttg ctccgctttc
    21361 ataaacataa gttttattac aaagttttga aatttcattg atgattggca taaaaagcga
    21421 gctatcaaaa ttgctaaatt taccttcttt aattgcagtt actctttcaa gccccattcc
    21481 tgtatcaatg cttggctttg gcagtgggct aagcactcca tcagcacttc tttcgtattg
    21541 catgaaaaca agattccaga tttctaaaaa tctatctcca tctccgccca tataatcttc
    21601 gcttgagtta aaatgctctt gtccttggtc ataaaaaatc tcactacaag gaccacaagg
    21661 accagtatcg cccatttgcc agaagttatc tttatcgcca aatttgtaaa ttctttcttt
    21721 ttgaatgtgt ttttgccata gattaaaagc ttcatcatcg ttttcatgca cggttacata
    21781 aagtctatct ttaggtagtt ttaaaacttc agttacaaat tcccaagcat aagctatggc
    21841 ttgttcttta aaataatccc caaagctaaa attcccaagc atttcaaaaa aagtatgatg
    21901 gcgtgcggta tatcctacat tatctaagtc attgtgcttt ccacccgctc ttatacaagt
    21961 ttgacagctt gttttgcgtg gagggtttgg gcgtggaatt tctcctgtaa atatactttt
    22021 aaaaggcacc atacccgcat tagtaaaaag taaagttgca tcatcaggaa ctaaaggact
    22081 tgacggggtt atctcatgtc cttttgatgc aaaaaaatcc aaataagctt ttctaatatc
    22141 catgaatttt cctaaagaaa tttttataaa aacatatcat accaaaatta ctttaaatta
    22201 agtaaaacta aaatacaata aacattttta tttaatttta tttctctaag gttttttatg
    22261 aattttatca atcttcaagc ccaatatctc gcatacaaag atgaaatcaa tgctaaaatt
    22321 gaaagcgttt tatcaagctc ttcttttata ggcggtacaa agcttaacga atttgagcaa
    22381 aatttagctc attttttagg tgttaaacac gctataggtt gttcaagtgg aaccagtgct
    22441 ttatatcttg ccttaagagc cttagatatt ggcaaagatg atgaagttat agtgcctagt
    22501 ttcactttca tagcaacagc tgaagttgtg gccttagtag gcgcaaaacc tgtttttgta
    22561 gatataaatt tatcaaatta caatcttgat tttgaagcag tacaaaaagc aataacccca
    22621 aaaactaaag ctgttatagc agtgagtatg tttggacaaa tgagtgattt aagggcttta
    22681 gaagaaattt taaaagataa aaatatcact ttgatcgaag atggtgcaca aagttttggt
    22741 gcaagtttca aaggagaaaa atcctgctct atagctaaaa tttcatgcac aagctttttt
    22801 ccttcgaagc ctttgggagc ttatggcgat ggtggggcta ttttttgcca tgatgatgaa
    22861 atttctaaaa aaataagaat tttactcaat cacggacaaa cacagcgtta taaacatgaa
    22921 tttataggta taaacggacg ccttgatacc ttgcaagcgg cgattttaaa tgttaagtta
    22981 aaatacctag aaaaagaatt agacaaaaga caaaaattag cacaaattta taatgcaaat
    23041 ttaaaaaact gccaaattcc gcaaattgat ccaaatgctt ttagcgctta tgcacaatac
    23101 agcgttttag ttgaagatag agctagtgta ttgcaaaaat ttgaaaaagc taatatacct
    23161 tatgctatac actatccaac ccctttgcat aaacaacctt gctttagtga gttttcaaat
    23221 ttagaactta aaaattcaga atacgcaagc gaacacatct tatctttgcc tttttcacct
    23281 tttttaagtg aagaagagca agagcaagtt atttgtattt ttaaagattg attccatgaa
    23341 aataggtatc ataggccttg gaaaaatggg gcaaaaccac ttaaatgaac ttagtaaaaa
    23401 ttctcatttt aaacttaatg cactttttga tctttgcaaa aatccaaacc taaatatttt
    23461 tgatgatatt ttttatgatg atctggataa atttttaaat caaaataatg atattatcat
    23521 catagcaaca cctacaaatt cacatttaac aatagcaaaa aaagttttta aacaatgcaa
    23581 atgcgtttta atcgaaaagc ctttagctct aaatttaaaa gaaatagacg aaatttcaaa
    23641 tttagctaaa gaatacagca taaaagtagg tgtaggtttt tgcgaaagat ttaatcctgc
    23701 ggttttagcc ctaaaaaaag agcttgaaaa tgaagaaatt atcagcatta acatacaaag
    23761 attttcaccc tacccacaaa gaatcagcga tgtagggatt ttgcaagatt tggctgtgca
    23821 tgatcttgat ttgctttgtt ttttaagcaa acaagaaata acaaaaacca atttgcttaa
    23881 aaaatacacc caagatcaaa caagagaaag tgaaagcatt attctatgtg agcttgaaaa
    23941 atgtattgct agcatacatc aaagttggaa tagcacacaa aaactaagaa aaattcatct
    24001 tattactaaa aatcattttt atgaagccaa tttaaatgac ttttctttat taaaagatgg
    24061 aaattttata gaacttactc aacaaagtcc acttttttca gaacacgaag ctttgttaaa
    24121 acttatcgat aatcaaccca atcatttagc cagcacgagc gatgcttaca aagttcaaga
    24181 aattttagaa aggtttgcgt gaaattagtt ttatttttaa atatgggcgg agctacgaat
    24241 ttacaagatt gtgaagtttt tttaaaaaat atgtttaatg atccttatat tttaggaatc
    24301 aaaaatcgat ttttaagaaa atttgtagca tggatcataa caaaggctcg cgttaaagcc
    24361 atgcaagaaa actataaaaa aatgggcgga aaatcccctt taaacgaact tactcaaagc
    24421 ctgtgtgaca agcttaattt aaaacaagat gaatttaaat ttgattttgt aaatctttat
    24481 gttcctcctt ttgccacaga aattttgcaa aaatacactt taaatgcaag tgatgaaatc
    24541 attctttttc cactttatcc gcaccattct tgcaccacag taacttcatc tttagaagtt
    24601 ctgcaaaatg aaatttcaaa gcaaaaaatt caagcaaaag taaaaactat agatattttt
    24661 tacaaaaatg agctttataa cgagatgata gtttcgcaca ttttggctaa aaaaagtaaa
    24721 tttgatgcca aaattttgat tttttcagcg cattctttac cacaaagcat tattgataaa
    24781 ggtgatttat atgaaaagca tgtaaatgat catgtagaaa ttttaaaaga aaagctaaaa
    24841 gatcattttg atgaatttat tttagcttat cagtctaaac taggccctgt aaaatggctt
    24901 gagccaaata cgagcgatat tttggcaaat ttagataata aagctttgat ttatcctatt
    24961 tctttttgca tagattgttc tgaaacgatt tttgagctag gtatggagta taaacattta
    25021 gcaaagtgcg attatgattt aatcacttgc ccaaatgata gtgatgaatt tatccacttt
    25081 attttaaagt atttatctga ttttaattaa gaatgatttt gaagtccttg tttatgatta
    25141 caaggacttt ttagtaaaaa tttagccaac taagctaaag tataagcttt ttctccgtgc
    25201 aaactcacat ctaagccttt ttgctctact tcttctttta ctcttaagtc tgtaaaacaa
    25261 gagataatct taaaaataac aaagcttata agagctgaca aaaccacaca aatcacaata
    25321 gcaaaaattt gctcttttaa aagttccaaa cttccgctga taaaaaatcc ctcgccaagt
    25381 gcattttggg caatcacatt aggatttact ttagcacttg caaaaagccc tgtggcaatt
    25441 cctccccaaa tacctccgat tccatgtaaa gaaaaggcat ctaaagaatc atcccatttg
    25501 agtttgtatt tgataaaact taaaccaaaa taacaaaaca cagaagacaa agtccctata
    25561 acaagagaag cataaatatc tacataaccg caagctggag taattcccac aagccctgct
    25621 acaagcccac taagtccacc taaaatagtc ggttttttat ggatgagcca ctcaagtacc
    25681 acccaagata aaaagccaca agctgctgat ataatactta ctataaaagc attgatagca
    25741 atatcattca tttcgccagc acttccagca ttaaaaccta accatcctat aaaaagcaaa
    25801 atcgcaccca agaaagcata aggaatagaa tgcgcgtttt tatcctcatc atcacttttt
    25861 ctagcgccta ccatcaaagc tcctacaagt ccggcaaccc cagagctgat atgcacaaca
    25921 ccgcccccag caaaatcaag acttcctctt ttaagcaaaa atccctcact gctccaaatc
    25981 atatgcgcta acacatcata aactaaagta ctccaaaaaa gtagaaatat caccaaaaca
    26041 cccagtttga ttcttcccac caaagagcct gttataatag cagatgcaat aagtgcaaac
    26101 atcatttgaa aaatcacaaa aagaatattt ggaacgcctg aagcgttgta tccgctaata
    26161 ccctctaaga ggaaattctc gaaatttcct acaagcccaa gtccttcatc tttaccaaaa
    26221 gaaagactaa atccaagcac tacccattgt aaagtaataa caccaaaaac aataaagcaa
    26281 ttcattatgg tattgagagt atttttactt cttaccatac ctgaataaaa cattgccaaa
    26341 gctggagtca taagcaaaac tagcaaagta cacaacacaa taaaacttga atttatcgca
    26401 ttcatttacc tgtcctttct tacaaaattt
//
LOCUS       DARGBD010000017        21547 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.017, whole genome shotgun sequence.
ACCESSION   DARGBD010000017 DARGBD010000000
VERSION     DARGBD010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21547
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.017"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1845)
                     /locus_tag="SFZ04_000566"
     CDS             complement(<1..1845)
                     /locus_tag="SFZ04_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEG8064869.1"
                     /translation="MANFKAFYNEAKYIFKDRIFNDYARCYAYGIDASCYFYIPKIVI
                     IAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDAS
                     EITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIVNNNSSGMCCGTKDNSYKT
                     LRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEEINANKELKDLIIKKFK
                     IKNTTGYSLNAFVDYDDEIDILAHLLIGSEGTLGFVSEVKLAVLDDLEFKACALLFFD
                     NINNAANTIKEFAKVDFVSSAEIMDYASLKAASTYDELRDILADIKEGNTCVLIQSEH
                     SNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVIT
                     EDVCFNIEDLADGIKSIQELFYKYGFGDNGIIFGHALAGNIHFIITPDLNNKLEFDNF
                     SNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKDSLFN
                     PDVIISDDKDIYKKNIKQVSWIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREI
                     KRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADF"
     gene            1997..2419
                     /gene="cgb"
                     /locus_tag="SFZ04_000567"
     CDS             1997..2419
                     /gene="cgb"
                     /locus_tag="SFZ04_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HEG8064870.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRNFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYINIEKKLYDK"
     gene            complement(2439..4070)
                     /locus_tag="SFZ04_000568"
     CDS             complement(2439..4070)
                     /locus_tag="SFZ04_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HEG8064871.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSLQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(4120..5415)
                     /locus_tag="SFZ04_000569"
     CDS             complement(4120..5415)
                     /locus_tag="SFZ04_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8064872.1"
                     /translation="MRKSKFETKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREYCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMIMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGVFMGYLVDKFGLFKICIFFSLAFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
     gene            5502..6299
                     /locus_tag="SFZ04_000570"
     CDS             5502..6299
                     /locus_tag="SFZ04_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8064873.1"
                     /translation="MFNFITTLLKTNLYFLEEKTTSKNSNQTHIISLKQSDDEFLNLL
                     FSFLVPQSDEDKNFIEKTRTKIKRNEHNIVLIKNPNFNALIDTGFLDTIDTLKEKLHI
                     HKTDFKDITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTL
                     LKLKNIEFIDHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIP
                     KPKIAIKFDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIKPKFLD"
     gene            6387..6605
                     /gene="infA"
                     /locus_tag="SFZ04_000571"
     CDS             6387..6605
                     /gene="infA"
                     /locus_tag="SFZ04_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEG8064874.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            6777..6890
                     /gene="rpmJ"
                     /locus_tag="SFZ04_000572"
     CDS             6777..6890
                     /gene="rpmJ"
                     /locus_tag="SFZ04_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEG8064875.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            6893..7258
                     /gene="rpsM"
                     /locus_tag="SFZ04_000573"
     CDS             6893..7258
                     /gene="rpsM"
                     /locus_tag="SFZ04_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEG8064876.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            7268..7660
                     /gene="rpsK"
                     /locus_tag="SFZ04_000574"
     CDS             7268..7660
                     /gene="rpsK"
                     /locus_tag="SFZ04_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEG8064877.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            7688..8314
                     /gene="rpsD"
                     /locus_tag="SFZ04_000575"
     CDS             7688..8314
                     /gene="rpsD"
                     /locus_tag="SFZ04_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEG8064878.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHILVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            8327..9340
                     /locus_tag="SFZ04_000576"
     CDS             8327..9340
                     /locus_tag="SFZ04_000576"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEG8064879.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            9344..9697
                     /gene="rplQ"
                     /locus_tag="SFZ04_000577"
     CDS             9344..9697
                     /gene="rplQ"
                     /locus_tag="SFZ04_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEG8064880.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            9870..10769
                     /gene="hisG"
                     /locus_tag="SFZ04_000578"
     CDS             9870..10769
                     /gene="hisG"
                     /locus_tag="SFZ04_000578"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEG8064881.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESHACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            10777..12063
                     /gene="hisD"
                     /locus_tag="SFZ04_000579"
     CDS             10777..12063
                     /gene="hisD"
                     /locus_tag="SFZ04_000579"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEG8064882.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQEEITQASKRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            12060..13118
                     /gene="hisB"
                     /locus_tag="SFZ04_000580"
     CDS             12060..13118
                     /gene="hisB"
                     /locus_tag="SFZ04_000580"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HEG8064883.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            13115..13702
                     /gene="hisH"
                     /locus_tag="SFZ04_000581"
     CDS             13115..13702
                     /gene="hisH"
                     /locus_tag="SFZ04_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG8064884.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            13699..14430
                     /gene="hisA"
                     /locus_tag="SFZ04_000582"
     CDS             13699..14430
                     /gene="hisA"
                     /locus_tag="SFZ04_000582"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEG8064885.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKAEVRALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLEN"
     gene            14415..15353
                     /locus_tag="SFZ04_000583"
     CDS             14415..15353
                     /locus_tag="SFZ04_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HEG8064886.1"
                     /translation="MSGKLTYKELIIEVLKQTKKPLNVSEIWQKALEKGLDKKLSSIG
                     QTPTQTIWNRLLTDKINFLKTSIKPTTFWLKERENELLKLDNKNEITNEKQEKNKFHE
                     RDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYDDYEKET
                     ITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQEIDSEVL
                     SELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKEFIDDIN
                     KQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            15354..16121
                     /gene="hisF"
                     /locus_tag="SFZ04_000584"
     CDS             15354..16121
                     /gene="hisF"
                     /locus_tag="SFZ04_000584"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG8064887.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            16123..16746
                     /locus_tag="SFZ04_000585"
     CDS             16123..16746
                     /locus_tag="SFZ04_000585"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEG8064888.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLDRLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAAIVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(16772..17932)
                     /locus_tag="SFZ04_000586"
     CDS             complement(16772..17932)
                     /locus_tag="SFZ04_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HEG8064889.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(17958..19064)
                     /locus_tag="SFZ04_000587"
     CDS             complement(17958..19064)
                     /locus_tag="SFZ04_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEG8064890.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNIIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSRRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            19187..20302
                     /locus_tag="SFZ04_000588"
     CDS             19187..20302
                     /locus_tag="SFZ04_000588"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HEG8064891.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSNVNLKYFDWTRL"
     gene            20299..21186
                     /locus_tag="SFZ04_000589"
     CDS             20299..21186
                     /locus_tag="SFZ04_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG8064892.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKATEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            21164..>21547
                     /locus_tag="SFZ04_000590"
     CDS             21164..>21547
                     /locus_tag="SFZ04_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEG8064893.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIY"
BASE COUNT         8084 a         3315 c         3401 g         6747 t
ORIGIN      
        1 aaaatcagca aaattaatcc ccaaaggaca tgaaaaagag cacactccac aagcagcaca
       61 agagctgtct actaaatgat tgtaatattt tttaatatcc tttaattttg cttttgactc
      121 atcatcattt aagctttcaa ggcgtttaat ctctcgtaag atcgcaattc tttgtcttgg
      181 agtaattgta tattcatttg atggacaaaa tctttcgcaa aatccacatt ccatacaggt
      241 atttaatttc tcatcaatcc aactgacttg tttgatattt ttcttataaa tatctttatc
      301 atcgctaatg attacatcgg gattaaataa actatcctta tcaaagatac ttttgatttt
      361 tttattgatc aaataagctt gcttacccca ctctacctcc acaaaaggtg ccaccatacg
      421 ccctgtgccg tgttcagctt ttatacttcc accataagaa gctactatat tagacatttc
      481 tttaactaga tttgaaaaat tatcaaattc aagcttattg tttaaatccg gtgtgataat
      541 aaaatggata ttgcctgcta atgcatggcc aaaaatgatt ccattatcac caaagccata
      601 tttataaaac aattcttgaa tgcttttaat tccatcggct aaatcctcga tattaaaaca
      661 cacatcttca gtaattaccg ttgaacctgc ctttctaaga ctagctgcta taggcaagag
      721 tgcttttcta atcttccacc ataaatcata ttcggcctta ttcttgctaa aatatgactt
      781 ataagccagt ttggaaattt cttttatttt atttatattt tcatcaagct taagctcatt
      841 actatgctca ctttggatca atacacaagt attaccctct ttaatatcag ctaaaatatc
      901 tcttaactca tcataagttg atgcagcttt taaacttgca tagtccatta tttcagcaga
      961 acttacaaaa tcaactttag caaattcttt tatagtgttt gcagcattat tgatattatc
     1021 aaaaaacaat aaagcacagg ccttaaattc caaatcatcc aaaacagcaa gcttaacttc
     1081 gcttacaaat cccaaagtcc cttcagagcc aataagcaag tgtgctaaaa tatctatttc
     1141 atcatcataa tcaacaaagg cattaaggct ataacctgtg gtgtttttga ttttaaattt
     1201 tttgattatt aaatctttta attctttatt ggcattaatc tcttctttga tctctctaag
     1261 ttcattaatt aattttttat tttcatcttt aaatcgagcc acgcttaaag catcactggt
     1321 atcaagcata ctaccatttg ccaaaatcac cctaatactt cttaaggttt tatagctatt
     1381 atccttagtt ccgcagcaca ttccgcttga attgttattt acaatccctc caattaaagc
     1441 tgaatttata gtagctggat caggtcctat ttttttcttc aaaaaagcaa gactttcatt
     1501 agcatgaatg cctactacac cacatcctaa agtaatttcg ctagcgtctt tgttaatttt
     1561 tattttttta aaggcaaatt taatcactac aagtactcca tcacaagagc tttgtccact
     1621 taaacttgta cctgctgctc taaatgttat aggagtttta taagtatttg ctaattgaat
     1681 aatttgctta atttcatctt catttttagc aataatcact atttttggaa tataaaaata
     1741 acacgacgca tcaatgccat aagcatagca tctagcataa tcattaaaaa ttctatcctt
     1801 aaaaatatac ttagcctcat tataaaaagc tttaaaattt gccatagtcc ctctttttaa
     1861 tttattatca attatataat ttaataattt aaagataatt ttaaatttat atttttgagc
     1921 ataattttaa cacaagtcaa tttttttctc ctttttaaga tataaaatat ctcttttaca
     1981 acaaaaagga gaaactatga caaaagaaca aattcaaatc atcaaagatt gtgtgcctat
     2041 tttgcaaaaa aatggagagg atttaaccaa tgagttttat aaaataatgt ttaatgatta
     2101 tcctgaggta aaacctatgt ttaatatgga aaaacaaatt tcaggagaac aaccaaaagc
     2161 tttagcgatg gcgattttaa tggcagctaa aaatatagaa aatttagaaa atatgagaaa
     2221 ctttgttgat aaagttgcca taactcatgt taatttaggg gttaaagaag agcattatcc
     2281 tatagttgga gcttgccttt taaaagctat taaaaatctt ttaaatcctg acgaagctac
     2341 tcttaaagct tgggaagttg cttatggaaa aattgctgaa ttttatatca atatagaaaa
     2401 aaagctctat gataaataat ataagcccat tttgggcttt aatcaaattt ttctactaaa
     2461 tttttagcta attcctttat attctcaccc tttaattcgc tgatttcacc attttgagcc
     2521 aagaaaattc tatcagcact atcaaaatat gcatcatcat gtgtgatagc aaagattgtt
     2581 ttaccttgct cttttagcaa aggtaaaagt tttttataaa aaaatcttct aaaaacagga
     2641 tcttgatcag ccgcccattc atcaagcact aaaatatccc tttcttcaag caaggctata
     2701 agcatagcta aacgcttttt ttgccctgta gaaagtttgg ttaaggtcag ttcattatct
     2761 ttgacacttg ttttatcttt aagttctaaa aactccaacc aaaaagcaat tttttcttcg
     2821 cttgcaaaat tttctttatt taaggtttta gtaaaaagat gaaaatcgct aaaaacagca
     2881 gaaataagag atctatactc atctaaattt ttatcatcta taagcgtatc atcaacataa
     2941 attccgcctt tgcttggctt aaaaagtcct gtcaaaagca tacaaaaagt ggatttacca
     3001 cttccatttt tacctattaa aaataccaat tcaccttttt taagttctat atttacagga
     3061 tttaaatgaa aattttcttc ataagcaaat tgagtatttc taaaagaaat ttttttccat
     3121 tcactgatat aatgtgtttt tttaaaacct tctatataat catctaattc caattttgcg
     3181 atcttatcca aagcgatttt tgccaaaagc aaagtaggaa aagatcctat catagatact
     3241 aaaggggttc gtaaaaacaa aatagaaaga gctatagttg tagcatctgc aacacttgcc
     3301 cattcaaatt ttaaagctaa gtaaaactct acgcccacta aagccaaaag agttacattt
     3361 gtccagttgt ttgagagatt gttaaaaaga ttgcctaaag tactattttt ctttttcaat
     3421 cttgcattat tttcaaattc atcttcatag taaagcttgg ctctgtcacg attgatcaaa
     3481 agttctttat gtccatctaa tatattttgg taattatttt gcaaagcatc gtcattttcc
     3541 cttgcctttc gaaaatactg atatactttc atcatcaaaa aattattagt aataaaaata
     3601 accataatcc ataccacaca caaagcaaaa atttgtagtg aaagataaca taaataaaca
     3661 ctagtgcata aaatcaatat acttgattgt aaaaaatcag gcaatcttaa aagcccaaaa
     3721 gatatatttc tcacatcact tcccaaagaa gctaaaattc tagccttacc tactttagcg
     3781 actcttaaca aaggggtgtc taagatctgc tttactacgc gcctttgcat tttaaaaata
     3841 aaattttgtc caaaaatact aagtccaagt tcaactatgg tagaacttat aaaaaaaatc
     3901 aaaagcaaaa caataaaata aaaaatagga atgttttgtg catttttaag caaataatca
     3961 ttgataaaaa caagagttaa aactccaaca gcgcttgtaa taaaagaaaa aagcaaaaaa
     4021 gaaatcaact ttaatttatt ttgcttaagt aattccataa taaaaggcat ttataaactc
     4081 caaaatataa ttttaattat aacattttaa gagtgattat caaaatttta ttttatcttt
     4141 tactataaaa acagcacaaa tagccaataa cgctaaaaaa atcatatata tactcatacc
     4201 atataaaaat ggattttcat ttttactcgc aagtgtatta agccaaaaaa cgagttgcgg
     4261 agtaataccg cctgaaattg cataagcaat attataagaa aaagaaattc ctgaaaatct
     4321 tattttagct ctaaaaactt cactcattaa aataggtgcg aacacattaa tcccacctaa
     4381 aaaacaaaca atcgaataca aaatacacac caaaaccaaa tttttaagct catataaagc
     4441 ataaaaatat aaaaaagaaa aaaatacaaa agctaaagaa aagaaaatgc aaattttgaa
     4501 taaaccaaat ttatctacaa gataacccat aaaaaccccg cctaaagcta ttcccaaaat
     4561 tcctaatatc tgtaaataac ttccttcaac cccacttaaa tttaaaatac taggcataaa
     4621 tttaggcatt aataaaacaa gcacaataac acaacctgtt aaaacccaag tcattatcat
     4681 tgatgaaaat aaatttttta caatatcctt ttctttaaat aaatctttaa gtggaaaaga
     4741 actaagcgat gattcttttt tcatttgttt aaaaacagga gtttcttgca aaaatctacg
     4801 caaataaata gaaataatcc caaaaattcc acctacaaaa aaagcaatac gccatgcata
     4861 agcagcaatt tcttctatgc taaaaaaagc attaatgatt aaaaatacta tacttcctaa
     4921 caaaattcct aaagccatag ctgaatttaa acagcttaaa aagaaagctt tttgtttttc
     4981 ttgacaatac tctcttacaa aaacccaagc tccaggcaat tctccaccta tagctatgcc
     5041 ttgaaaaatt cttataagta tcaataaaac aggagctaaa aacccaagag tttcataacc
     5101 tggaataaaa gctaagacaa aggtaggaag aaccattagt aaaatactta gcataaacat
     5161 atttttacgc ccaaatttat ctccaaaatg tgccataact ataccaccta aaggacgtgc
     5221 taaatatcca gctgcaaatg ctccataagt atttaataaa gcccaaaatt cactcatatc
     5281 tttaggaaaa aatacattag ctatatattc agcaaaaaag acaaaaataa taaaatcata
     5341 aaattctaaa gttcctccta gtgaagaaag tcctaagatc ttaatttcct ttgtttcaaa
     5401 ttttgatttt ctcattgatt aattacctta aattttaaaa acattgtttt tattatacta
     5461 taatcatttc caaaatatta tctaaaaatt taaggataaa tatgtttaat tttataacca
     5521 ctcttttaaa aaccaatctt tattttttag aagaaaaaac cacaagcaaa aattcaaatc
     5581 aaacccatat aatctcactt aaacagtctg atgatgaatt tttaaattta ttattttctt
     5641 ttttagtgcc acaaagcgat gaagataaga attttataga aaaaactcgc acaaaaatca
     5701 aaagaaatga gcataatatt gttctgataa aaaatccaaa ttttaatgct ttaatagaca
     5761 cagggttttt agatactatt gacacattaa aagaaaaatt acatatccat aaaaccgatt
     5821 ttaaagatat cactcatatt atcttaacac acgcacatcc tgatcatata ggtgctttaa
     5881 tgagcgaaga aaatcttttt ccaaaagctc aaattttaat cgataaaaaa gaatatgatt
     5941 tttggatcaa aagcgataga caagaaatta aaaacacctt gcttaaactt aaaaatatag
     6001 aatttatcga tcattccaaa gatttgatct ttcaaaattc aggtattaaa gccatacctg
     6061 cttacgggca taccccaggt caaaatgcta tcataattga tgataaaata gtcttttggg
     6121 gagatttact tcatctttat gatatacaaa tcccaaaacc taaaatcgct ataaaatttg
     6181 atatagatca aaatgaggct atacaaacaa gggaaaaact acttaaagaa tttaaagaaa
     6241 gaaaactcaa agttataggg actcatgtgc cttttatcaa acctaaattt ttagattaat
     6301 tacttaaaaa ttactaaaaa ttaagtaaaa attttaataa tttttgctaa aattatagcc
     6361 tttttatttc atgaaaggag aaaattttgg caaaagatga tgtaattgaa attgatggca
     6421 ccgtacttga agcattgcct aatgcaaatt tcaaggttga acttgacaac aaacatgtaa
     6481 ttttatgtca tattgcagga aaaatgcgta tgcattatat aagaataatg ccaggtgata
     6541 aagtaaaagt agaacttaca ccttatagcc ttgataaagg gcgtataact tttagatata
     6601 aataatctaa gttatttaaa agctaatttt agataaaatt agagtttttg cgacaaatta
     6661 catcgaacta tatgaagaag tatttttaaa atccaccact tattttgaaa atagttggtt
     6721 attcataaaa cctgatgtag tcgtaaatca agtggaattc attcaaggag acgctcatga
     6781 aagtgagacc atcggttaaa aagatgtgcg acaagtgcaa agtagttcgc cgtaaaggcg
     6841 tggttcgcat tatttgcgaa aatccaaaac ataaacaaag acaaggataa acatggctcg
     6901 tattgcaggt gtggatttac caaagaaaaa aagaattgag tatggactaa cctatattta
     6961 tggtatagga cttttcactt caagaaaaat tctagataaa gtaggaattt cttatgataa
     7021 aagagttcat gagttaagtg aagatgaagc agcagctatc cgtaaagaaa ttcaagaaaa
     7081 ctatatggtt gaaggggatt tgagaaaaca agttgctatg gatattaaag cacttatgga
     7141 tttaggaagc tttagaggct taagacacag aaaaggctta ccagttcgcg gacaaaaaac
     7201 aaaaacaaac gcaagaacta gaaaaggtaa gagaaaaact gttggtgcaa aatcataagg
     7261 ataaatcatg gcaaaaagaa aaatcgtaaa gaaaaaagta gttaaaaaaa atatagcaaa
     7321 aggtattgtt tatatcagtg cgacttttaa caatactatg gttacagtga ctgatgaaat
     7381 gggaaatgct atcgcttgga gtagtgcagg tggtttagga tttaaaggtt ctaaaaaatc
     7441 aactccttat gcagcacaac aagcagtaga agacgcttta aataaagcaa aagaacacgg
     7501 aattaaagaa gtaggcatta aagtacaagg accaggaagc ggtagagaaa ctgctgttaa
     7561 gagtgtaggt gctatggaag gaatcaaagt aactttctta aaagatatca ctccattagc
     7621 tcacaatggt tgcagaccgc ctaagcgtcg tcgtgtctaa gatataagaa aaatttagga
     7681 gaatattatg gcaagatata gaggaccagt agaaaaatta gaaagacgct ttggtgttag
     7741 cttagcatta aaaggagaaa gaagactagc tggcaaaagt gcactagaca aacgccctta
     7801 tgcgccagga caacacggag caagaaaagg taaaattagt gagtatggac ttcaattaag
     7861 agaaaaacaa aaagctaaat ttatgtatgg agtaagcgaa aagcaattcc gtcgtttatt
     7921 tgctgaagca gcaagaagag aaggaaatac aggggtatta cttatccagc ttttagaaca
     7981 aagattagac aatgtggtat atagaatggg ttttgctaca acacgtcgtt ttgcaagaca
     8041 acttgtaaca catggacata ttttagtaaa tggtaaaaga gtggatattc ctagctttag
     8101 agtagaagca ggtgctaaaa tcgaaatcat cgaaaaaagc aaaaacaatc ctcaaataac
     8161 aagagctatc gaacttacag cacaaactgg aatcgttgct tgggttgatg ttgaaaaaga
     8221 taagagattt ggaattttca caagaaaacc tgaaagagaa gaagttgtca ttccggttga
     8281 ggaaagattt atcgttgagc tttactctaa gtaatagggg ctaaatatga gaaatattac
     8341 aacatctgct tatacgccaa cagaatttac aatagaaaac attagtgata ctgtggctaa
     8401 aatcagtgct tggccttttg agatcggcta tggaatcacc ctagcccatc ctttacgccg
     8461 tttgctttac actagcacca taggatatgc tccaactgcg atccatattg atggcgtagc
     8521 tcatgaattt gatagcatgc gtggtatgct tgaagatgta gcacttttta tcattaatct
     8581 aaaaaaacta cgctttaaaa ttaaaggcga atcaaataaa gaaatagtag aatttagctt
     8641 taaaggctca aaagaaattt acggcaaaga tctaaataat gatcaagtag aggtagtaaa
     8701 caaagacgcc tatctagcaa ctattaacga agatgctgaa ctcaaattca cattgatcgt
     8761 tgaaaaaggt attggctatg taccaagcga agaaattaaa gagcttataa atgatcctaa
     8821 atttatagct ttagatgctt tctttacacc tgtaagagaa gcaacctatg atattgaaaa
     8881 agttttgttt gaagataatc ctgattatga aaaagtggtt ttaactgtaa caactgatgg
     8941 acaaatcact ccaaatgaag cttttcaaaa tgctctagaa gctatgtata aacaattatc
     9001 agtatttgat aaaatcacca atgttagaag cgtaattaaa aatcaagcaa caagcaatga
     9061 actagaaaat actaaattat tgcaaaacat tacagattta aatttaagtg ctagaagtta
     9121 taattgtctt gaaaaagcag gagtagttta cataggcgag cttgctttga tgagtgtaag
     9181 tgaacttgca gggcttaaaa atttaggtaa aaaatctctt gatgaaatta aaaacatcat
     9241 ggaaagcata ggttttcctg tgggaacttc taagcttagc gataataaag aaatacttaa
     9301 aaataaaatc gcagaattaa aagcacaaaa cgaaggataa agaatgagac ataaacatgg
     9361 atatagaaaa cttggcagaa cttcatctca tcgtgctgcc ttattaaaaa atttaactat
     9421 agctttagta aatagcggaa aaatcgaaac tactctacca aaagctaaag aattaagagg
     9481 ttatgtagaa agattgatta ctagagcaag acttggagat tttaacgctc atagagcagt
     9541 ttttgcttca ttacaagata aaaacgctac taataaatta gtgactgaaa ttgctccaaa
     9601 attcaaagat cgcaatggtg gatatacaag aatcatcaaa acaagaattc gccgtggtga
     9661 tgctgctgaa atggctttca tcgaatttgt agcttaatca aatcctagct tttgctagga
     9721 ttaatacttc aattaaatac cttaaaaata aaaagtttta aataattatt ttaaataaaa
     9781 ttaaatttat ttattttcta aaacccttgc taaaaattca actacttatg ctaatataag
     9841 tttttaattt ttaatttcaa ggatatgtta tgcaagaaaa cactcgttta cgcattgcga
     9901 tacaaaaatc aggtagactt tcaaaagaat ccatagagct tctttcagaa tgtggtgtta
     9961 aaatgcatat ccatgaacaa agcttgatcg ctttttctac aaatttaccc atagatattt
    10021 tacgcgttag agatgatgat atccctgggc ttatttttga tggggttgta gatttaggca
    10081 ttatagggga aaatgtttta gaagaaaatg aacttgaacg ccagtcttta ggagaaaatc
    10141 caagctataa gcttttaaaa aagctagatt ttggatattg ccgtctttct cttgccttac
    10201 ctcaagaaaa taaatttcaa aatttgaaag attttgaagg cttaaggata gctacttctt
    10261 atccacaact tttaaagcgt tttatgaaag aaaatgggat taattataaa aattgtacgc
    10321 ttacaggttc tgttgaagta gcccctaggg caaatttagc cgatgcgatt tgcgatcttg
    10381 tttcaagcgg ggcaacttta caagcaaaca atcttaaaga agttaaagtc atttatgaat
    10441 ctcatgcttg tttgattcaa aaagaaaatg ctttaagtaa agaaaaacaa gccttagtgg
    10501 ataaaattat gttgcgtgta gcaggagtaa tgcaagcaag agaatctaaa tacattatgc
    10561 ttcatgctcc aaaagaaaag cttgataaaa ttcaagccct acttccagga gttgaaagac
    10621 cgactatctt acctttagca cacgatgaaa aaaatgtagc tttacatatg gtaagtaaag
    10681 aaaatctttt ttgggaaacc atggaggctt taaaagaaga aggtgcgagt tcgattttag
    10741 ttctgcctat agaaaaaatg ttaaagtgag taaaaaatgc aaattttagt atatgataat
    10801 ttggatgaaa aacaaaaaga agaagcgtta aaacgccctg ctataagtgc gaaagatgaa
    10861 atttcaaaaa tagtaagttc tatcattaaa gaagtgcaag aaaaaggcga tgaagctttg
    10921 atagaacaag ctttgaaatt tgataaggct gaaatttcaa agattaaaat cactcaagaa
    10981 gaaatcactc aagcaagcaa gcgtttagat aaagatttac aagaagctat tttagtggct
    11041 tatgaaaata tcaaaaaatt tcacgaagcc caaatcccac atgaaatcgc tcttgaaact
    11101 acaaaaggcg ttaaatgtga agttttaaca cgccctatag aaaaagtagg actttacata
    11161 ccagggggtt tggcaccttt gttttcaacg gttttaatgc tagctattcc tgcaaaaatt
    11221 gcaggttgtg aaaaaatcgt tttagcaagt cctgcaaaaa tcaatgatgc tgtgcttttt
    11281 tgtgctaagc tttgtggcgt ggatgaaatt tatcaaatgg gcggtgcagg agctatagca
    11341 gctttggctt acggtaccca aagtgtttta aaggtggata aaatttttgg cccaggaaat
    11401 gcctttgtaa ccgaagcaaa acgccaagta agtagtgata taaacggagc agctattgat
    11461 atgcaagcag gacctagtga agttttagtc atagctgatg atttagctaa tgaaaaattt
    11521 gtagctagtg atttgctttc acaagctgaa catggtgcag attctcaagt gattttagtg
    11581 tgtttaagtc aagattttgc taaaaaagca agtgatgaag tccaaagtca attagaactt
    11641 ttgcctcgca aagaacttgc aagcaaaagc attgctaatt cacgcattat catagctaaa
    11701 gatttaaatc aagctttaga aatttcaaat ctttacgccc ctgaacattt gatcatacaa
    11761 actcaaaatc cacgagaact tttaaaaggt gtaaaacacg caggatcagt atttttagga
    11821 gcttattccc cagagtctat gggtgattat gcaagtggga caaatcatgt tttacctact
    11881 tatggactta ctaaaacgca ttctagttta ggtttggcag attttagtaa aagaatgacc
    11941 gttcaagagt taagtaaaga aggtttttta gctttaggta aaagtgttga aattttagca
    12001 caaaatgagc atttagacgc gcacaaaaat gcagtaactt ttcgtttaga aagcttaaaa
    12061 tgagtcaaaa aatccttttt atagatagag atggcacttt aatagaggag ccaaaaagcg
    12121 attttcaaat cgatactctt gaaaaattgc gttttgaaaa agatgctatt cccactcttt
    12181 taaaactaaa aaaatttgga tttaaatttg ttatggtaag caatcaagac ggtcttggaa
    12241 caccaagttt tccaaaggaa aattttgaaa tcgctcatga aaaaatgctt gatattttaa
    12301 aaagttgcgg tatagaattt caagatattt ttatttgtcc gcattttgaa aatgaaaatt
    12361 gtgcttgcag aaaacctaaa accgctatgt tagaagagta tatcaaacac gaactttatg
    12421 ataaggagca aagttttgtt ataggagatc gtgagagtga tatgatcttg gcttcaaatt
    12481 taggcgtgcg tggtttaaaa tacggcgaac tttcttggaa agaaatagaa aatgaaattt
    12541 taagttcttt tagaagcgcg agttatcaaa gaactactaa agaaacagat ataaaagtaa
    12601 aggtatgctt aaatgggggt aaggttagca ttaaaacagg tattgatttt tttgatcaca
    12661 tgttagagca aatcgctgta catggaggta tagggcttga aatttcttgt aaaggagatt
    12721 tggaaatcga tgagcatcat agcgttgaag atgtagcctt agcacttgga gcttgtatca
    12781 aaaaagcttt aggggataaa atcggcattg caagatatgg ttttgcttta cctatggatg
    12841 agtgtttggc aagttgtgcg atggattttt gcaatcgtcc ccatttagtc tataaagcca
    12901 aatttaaaaa atctcattta ggggctttaa gcacagaaat gatcgagcac tttttttatt
    12961 ctttaagcta tgctatgggc gtgagtttgc atttaaaagt taaaggcaaa aacgatcatc
    13021 ataaagccga agggcttttt aaagcctttg caaaagcttt gaaaatggca gtaaaaatag
    13081 aaagtgaaaa tttagccagc tctaaaggag tgatatgaaa atcatcatca tcgatacagc
    13141 ctgtgcgaat ttagcatctt tgaaattttg tctagataga ttaggtttta atgcaactat
    13201 cagtagggat ttaaaagaac ttgaaagtgc ggataagctt tttttacctg gagtgggtac
    13261 cgcaaaagaa gcaatgaaaa atttagaaca atttaatctt attgatttta ttcaaaatac
    13321 caaaaaacct ttgcttggta tttgtttagg tatgcaaatt ttaggaaatt tttctgaaga
    13381 attaaatcaa gaaaccttaa aactcataga ttttacaact caaaaattta aagctaaaga
    13441 aggctttact tttccacata tgggatggaa tgaagtttat agctctcatg ctttgtttaa
    13501 aggcttagaa ggggcttatt tttattttgt gcatagttat tgtgtaggac ttgggaaata
    13561 cactatagca gattgtgagt attcgcaaaa atttagcgca agcgtaatga aagataattt
    13621 ttacggagtg caatttcacc ctgaaagaag tagcgaggct ggggaaattt taatttcaaa
    13681 ttttattaag gatataggat gactcaaatc atacccgcac tcgatcttat agatggcgaa
    13741 gtggtgcgtc ttgtaaaagg ggattacgaa caaaaaaaag tatataaata caatccctta
    13801 aagaaattta aagaatacga aaaagcagga gcgaaagaac ttcatcttgt agatcttaca
    13861 ggtgcaaaag atcctagcaa aagacaattt gctttgatag aaaaattagc caaagaagtc
    13921 agtgtcaatt tgcaagtagg tggaggtata cgctctaaag cagaagttag agctttgctt
    13981 gattgtggag taaaaagagt agttatagga tctatggcaa ttaaagatgc gactttatgt
    14041 cttgaaattt taaaagaatt tggtagtgaa gctatagttt tagccttaga tacgatttta
    14101 aaagaagatt atgttgtggc tgtaaatgct tggcaagaag caagcgataa aaagcttatg
    14161 gaagttttag atttttatag caataaaggc ttaaaacaca tactttgcac agatatttca
    14221 aaagatggca ccatgcaagg agtaaatgca agactttata aacttatcca tgaaattttt
    14281 cctcatattt gcattcaggc aagtggtgga gtagcaagct taaaagacct tgaaaactta
    14341 aaaggaattt gtagtggggt tatcgtagga aaagctttat tagacggagt ttttagtgta
    14401 gaagaaggga taagatgtct ggaaaattga cctataaaga attaattata gaagttttaa
    14461 aacaaactaa aaagccttta aatgtgagtg aaatttggca aaaagctctt gaaaaaggct
    14521 tagataaaaa gctttctagt ataggacaaa cacccactca aacaatttgg aataggttgc
    14581 ttacagataa aattaacttt cttaaaacct caataaaacc tacaactttt tggctaaaag
    14641 aaagagaaaa tgaactttta aagcttgata ataaaaatga aattactaac gaaaaacaag
    14701 aaaaaaataa atttcatgaa agagatttac accccttgct tgtaaaattt ttatatgaaa
    14761 atttagattt taatttaaat tgcaaaacaa tttaccatga acaaagcaaa aagggtaaag
    14821 gtggggaaga taagtggaat tatcctgata ttgtaggggt ttattttcct tatgatgatt
    14881 atgaaaaaga aaccataaca cttttagaaa atatcaaaca aaacagctat aaactttttt
    14941 cttttgaact taaaattgct ttaaattttt caaatttaaa agaatgctat tttcaagctg
    15001 taagtaattc tagctgggca aatgaaggct acttggttgt tttacaagaa attgatagcg
    15061 aagttttaag cgagttaaga cgcttaaatc aaagttttgg cataggagtg ataaaacttg
    15121 aaaaagatat ttcaaattct caaattttaa ttagtgcaaa agaaaaagaa cttgatattc
    15181 aaacactaaa tatgctgatc aataaaaatc caaattttaa agaatttatt gatgatataa
    15241 acaaacaaat taaagtgggc aaagaagcaa aaattcaagc taattttgat gaaattaaaa
    15301 gcgatgaaga aatggaaaaa tatcttaaag aaaaatgtat tttggagaaa taaatgctta
    15361 caaaacgcat aattgcatgt ttagatgtca aagatggcag agtagtaaaa ggaacacaat
    15421 ttaaaaacca taaagatatg ggagatatca tagagcttgc taggtattat tctcaaaatg
    15481 gtattgatga gcttgttttt tatgatattg ctgcaagtgc tagaaaagaa cgcatatcaa
    15541 gagaatgggt aagtgaagta gcaaaaaata tcaatattcc tttttgtgtt gcagggggta
    15601 ttaaaagcga agaagatgca gctgaacttt tggctaatgg ggcagataaa atttctatca
    15661 attctcctgc tttaaatgat ccaagcctaa tcacacgcct tgctaaaagc tttggcgtgc
    15721 aatgcgtagt agtagggatt gatagtttta aagatgaaaa tggaaattta aaagtatttc
    15781 aatacacagg ggatgaaaaa acaagtaaac atagtggaaa aagcacttta gaatgggtta
    15841 aaaaagtgca agatctaggt gcaggcgaaa ttgttttaaa tatgatgaat caagatggtg
    15901 ttaaaaatgg ctatgattta gaacaattag aagctgtata taaaatttgt aaagtacctt
    15961 tgatcgcaag tgggggagcg ggaaaaatgg aacatttttt agaagctttt aaactaggta
    16021 tagatggggc tttagctgct tctgtttttc atcaaaaact tatagacatt aaagaattaa
    16081 aaatttatct taaaaatcaa ggcttaagta taaggatata atatgcaaaa tttcaaagaa
    16141 cttaatgaaa aaatcgcttg gcaaaaagtg gataatcttt tacctgtcat catccaagat
    16201 gcaaaaactt gcgaagtttt aatgctaggc tttatgaata atgaagcctt agaaaaaagc
    16261 ttagaaagtg gcaaagtagt ctttttttca cgcacaaaac agcgtctttg gatgaagggt
    16321 gaagaaagtg gaaatttctt aaatatcata gatttaagct tagattgtga taatgacacg
    16381 cttttaattt tagcaaatcc tgtagggcct acttgtcata cgggcgatat ttcttgtttt
    16441 gaaaaaattt ctaaaaatgc agattttgtt tttctagaca gacttgaaaa acttattaat
    16501 gcacgcaaaa atgccgatga aaatacttct tatacagcaa aacttttcaa aagtggtaca
    16561 aaacgcatcg cacaaaaagt tggtgaagaa ggcgtagaaa cagctttagc agcgatagta
    16621 aaagataaag aagagcttat ttgtgaagca gcggatttaa tgtatcattt aagtgtttta
    16681 cttgcagatg caaatcttag tttctcagat gtgatttcaa agttgaaaga aagacataaa
    16741 gcttaaagct ttatgtaaaa taaaatttat atcaatgcaa ggcttcatta agtttgactg
    16801 cttttttatt taaagctact atcatagcac cacttataga atcttgacgg aaatgtagtc
    16861 catttaaacc tttaagctct aagcctttgt aaatttcttt atcaaaatta aaataaggat
    16921 taagtttagc aagttcttcg gcatctttga gtaaaaattt cgttccctct agcactgcaa
    16981 tacctgcatc aactatacaa ttatccccta aaggaattcc tgtcactgaa ttagccccta
    17041 aaagacaagc cttgcctacg cttatagcat tgccacttgt tccacttaaa acacctaaaa
    17101 tcgaagctcc gccacctaca tcagaacctt ctcctactat agcacttgaa ctaatacgcc
    17161 cttcaaccat acaagctcct gttgtacctg cattaaaatt cacataactt gcccctggca
    17221 tgatggttgt tcctgctgct aaagacgcac ccattcttac tttagaactt tctaaaattc
    17281 ttgtattatc ctcagggata atatgtgcta aaaatcttgg gaatttatca acaaaatcga
    17341 tttttggata ttgattgctc atttttaaac gcatttcatt tgctcttaaa tactcaagct
    17401 cgataggctt atcatcactc caagctacat tgcttaaaag tccaaaagct ccatttaaat
    17461 tgatacttct taaaggtact tttttagtag aaagcaaata aagttttaga taaatacttt
    17521 ctacacttaa aggttcttta tcttcaaaaa gacaaacaaa agaaaattca tcgtctttaa
    17581 atttatcttt gataatcttt aataaatcaa tattttgatg cccatcttct tctaaaaaag
    17641 gtttaaaaca agaaagtgca aaatcaatat cttctaattt caaagtttgc acaaactcac
    17701 tcgcattaaa atcaatctcc acgccccttt gcataaaagc ttcaagcatg attgccgctg
    17761 agccaaaatt ttgctcatag ttaatcaaag caaaacttgc ttgtaagatt ttatttttat
    17821 ttaactgtcc tctatcaagc cttgctatac caaaagcttt aggtttttta tagccacttt
    17881 tttgctcgat ttgtttgatt aaaagtaaaa aatcttcttt agtattaatc attttctttt
    17941 ccttatccac ttaattttta atgcgaacac gcactttttc cattcatcac aggttgtata
    18001 gcagaattat ccgcaccacc ttcattgtta atcttttcta taaaactcca aattttttca
    18061 gccgccatta aataacgcct tgaactcaca ctttcagggt gataaaaact cacaggcttg
    18121 ccttcatctc caccttctct tactatcatt tctataggaa tttgtgctaa aacttcactt
    18181 ttataggctt ttgccatatc ttcagctgtt cctttaccaa aaatatcata ctctttacca
    18241 ttatcaggac ataaaaatcc actcatattt tcaatcacac ccgctatagg aatatgaagt
    18301 ttattaaaca tatctaaagc tcttttgcta tcgtctaaag atacggtttg aggcgtgctt
    18361 acacaaactc ctgcagtaat aggaatactt tgcgcagaag taatttgtgc atcgcctgtt
    18421 cctggaggca tatctaaaaa caatacatca agttcaggcc aaatcacatc agctaaaagt
    18481 tgctcgattg ctttcataat catagctcca cgccacataa ggccttgacc ctcttcgatc
    18541 aaaaccccca tactcatcat ataaacacca tgagttaaaa taggctttaa tctctgccct
    18601 actacttcag gctgagtttt ggtttcacct agcattcttg gaatatttgg cccataaata
    18661 tccgcgtcta aaatacctac tctttttccc attttagcca tggaaattgc taaatttact
    18721 gtagttgtag atttacccac accacctttt ccacttgaaa ccatgatgaa attttttact
    18781 tgtggagcga tattttttcc acttcttgaa ttactttttt cttcaggaat ttttggagta
    18841 atgatattaa gttcaatatt ttttaaagcc aaactcgata aagcttcaat aatattttta
    18901 cgaatttcat tagctacttc aggatttgct gaaacgattt ctatatcaat gaatacacca
    18961 tcatcttgaa ttttaatatc ttttacaaag ttaaaactca ctatatcctt ttcaaaacca
    19021 ggatatttta cagtttttaa tttctctaaa atttgttctt tcatattttt tccttgtctt
    19081 ttaaaaaaat caattttact aataaaatga taaaatttag ctttttataa gtgtataata
    19141 tggtaacatt ataaaaacca acaatattaa aaagaggaat gaaaaaatga gtgaaatgag
    19201 cctcattatg ttagcagctg gaaattctac tcgttttaat acaaaggtaa aaaaacaatt
    19261 tttacgactt ggaaatgacc ctctttggct ttatgcaaca aaaaatttaa gctcttttta
    19321 tccttttaaa aaaatagttg ttacctctag taatatcact tatatgaaaa aatttactaa
    19381 aaactatgaa ttcatagaag gtggtgatac cagagcagaa tccttaaaaa aagccttaga
    19441 gctcatagat agcgaatttg ttatggtaag tgatgtagca agggtattgg tgagtaaaaa
    19501 tttgtttgat cgtttgattg aaaatttaga taaagcagat tgtattaccc ctgctttaaa
    19561 agttgcagat acaacacttt ttgacaatga agccttgcaa agagaaaaaa tcaaactcat
    19621 tcaaaccccg caaatttcta aaaccaaatt gcttaaaaaa gccttggatc aaaacctaga
    19681 atttacagat gatagcacag ctatagctgc aatgggtgga aaaatttggt ttgttgaagg
    19741 tgaagaaaat gcaagaaaac taacctttaa agaagatctt aaaaaacttg atttgcctac
    19801 acctagcttt gaaattttta ctggcaatgg ttttgatgtg catgaatttg gagagaatcg
    19861 ccctttgctt ttagcaggag tgcaaattca tcctactatg gggcttaaag cacacagcga
    19921 tggagatgtt ttagctcact ctttaaccga tgcgatttta ggtgctgcag gacttggaga
    19981 tataggagag ctttatcctg atactgatat gaaatttaaa aatgccaact ccatggagct
    20041 tttaaaacaa gcttatgata aagtcagaga aataggtttt gaactcatta atatagacat
    20101 ttgcgtcatg gcacaaagcc ctaaacttaa agactttaaa caagctatgc aaagcaatat
    20161 agctcatact ttagatttag atgaatttag aatcaatgtt aaagccacaa caacggaaaa
    20221 attgggtttt attggaagaa aagaaggtat ggcggtgctt agtaatgtaa atttaaaata
    20281 ttttgattgg acaagattat gaaagtttta attattgaaa atgaaattta tctagcgcaa
    20341 agcattagca ttaaactaag tgatgctgga tatagctgtg aaattattaa ctcgtttgat
    20401 gaatacaatg gtgaaaaata ctatgacatt atactgcttt ctacaaatac taataatttt
    20461 ctaaaagccg taggtcagtt taaacatagt attattattt tgcttatttc ttatataagt
    20521 acagatacag tttcaaatcc tttgaaatta ggtgctagtg attatattca aaaacccttt
    20581 atgatagaag agctgattag aaaaataaag cattatcagg attttagaaa actttcaatc
    20641 cttaataaag cttatcaaag ctatatcaaa tcaagattag aaacaatcaa aattccagag
    20701 tataattata aaaaattaaa acttccattg atattaaaat ccaacaagca aagcagtgct
    20761 gatgcttttg tttttaatta tgcaaatgaa tgtgacatta ctctttcttt tattgattta
    20821 acatctacaa attcagttga aaaagttatg aaacttccca cagaaaacaa tctcttattt
    20881 ttgagtaatt ttcaagcatt aaaagcaaca gaaaaggaaa aactcctaga ttttatacaa
    20941 aacaaaaatg ttattttgca taccaattca aatacagatg atttaaaaat aaactgcatt
    21001 aatttaaatg ataatgaaaa aaatatcaat agcaatgaaa ttttaactat agatgagtat
    21061 gtaaaatatg ttattataaa ttaccaaaat atatttcctg atactgatct ttcaaaaaaa
    21121 ttaggcattt cacgtaaatc tttatgggaa aaaaggaaga aatatgaaat cagcaagaaa
    21181 aaataaaaac attaccatag atcaaaatga atttggcatc ttgtcactta ttaaagaagg
    21241 tttgctaggt acttgcactc atttaatgaa tgaaaaagaa gtcaatgaaa tcattaaatc
    21301 aggaaaattt aaaggagaaa gttttcccta tcccttaagc tttgcaccaa aaaatgctga
    21361 agaagcacta aatgatataa aatctggcga tagaatcgat ctcatactag atgaaaaagt
    21421 agtaggacat atagatttta aaagccaatt taaaaataat aaaaattttt ctgatatttt
    21481 cagtcctaac acttgctctt tagaagacat gggaacaact tgcataagtg gaaaaataga
    21541 aatttat
//
LOCUS       DARGBD010000018        20851 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.018, whole genome shotgun sequence.
ACCESSION   DARGBD010000018 DARGBD010000000
VERSION     DARGBD010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20851
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.018"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1233
                     /gene="murJ"
                     /locus_tag="SFZ04_000591"
     CDS             <1..1233
                     /gene="murJ"
                     /locus_tag="SFZ04_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEG8064894.1"
                     /translation="KKKGAFCVSVMMQFSLIVFLFCLLVSFFSSFFTKLFAFGFNADT
                     IALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAALFNLSIVIAAFFVDKN
                     APQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMTLSIKFKKAKAKLQGFYGNFF
                     HGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLALFAIALTQVSFPKIL
                     KHLKSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKLLFERGNFTHEDSVIT
                     AYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLIISALCSMAFIFLIKDE
                     SLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLVIVALIVFTILLILIK
                     PYILSFFIGIFTSFKGVF"
     gene            1233..2621
                     /locus_tag="SFZ04_000592"
     CDS             1233..2621
                     /locus_tag="SFZ04_000592"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEG8064895.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYENEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLLDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNVSKALALLDDFINNANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKSKDFNTADTIREQLSSKKITLLD
                     TPNGTIWEKINA"
     gene            2614..4356
                     /locus_tag="SFZ04_000593"
     CDS             2614..4356
                     /locus_tag="SFZ04_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8064896.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFSKHNDILCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            4388..5446
                     /locus_tag="SFZ04_000594"
     CDS             4388..5446
                     /locus_tag="SFZ04_000594"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEG8064897.1"
                     /translation="MAYEMIKPLLFKLNPEYTHALVECSLRALSASFPGALSFLAHKY
                     IVDNESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            5443..6693
                     /locus_tag="SFZ04_000595"
     CDS             5443..6693
                     /locus_tag="SFZ04_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG8064898.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTM
                     PKIHTKEPKQDGAKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDDNLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            6686..7582
                     /locus_tag="SFZ04_000596"
     CDS             6686..7582
                     /locus_tag="SFZ04_000596"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEG8064899.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            7582..8361
                     /locus_tag="SFZ04_000597"
     CDS             7582..8361
                     /locus_tag="SFZ04_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HEG8064900.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(8402..8707)
                     /locus_tag="SFZ04_000598"
     CDS             complement(8402..8707)
                     /locus_tag="SFZ04_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064901.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFIGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(8719..9315)
                     /locus_tag="SFZ04_000599"
     CDS             complement(8719..9315)
                     /locus_tag="SFZ04_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8064902.1"
                     /translation="MQIIKQACGAYETNCYILFGEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDTFMLEDPFNQGFMPSKADYLIDDEN
                     IISIGGLDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            9389..10129
                     /locus_tag="SFZ04_000600"
     CDS             9389..10129
                     /locus_tag="SFZ04_000600"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEG8064903.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDKGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            10133..11059
                     /locus_tag="SFZ04_000601"
     CDS             10133..11059
                     /locus_tag="SFZ04_000601"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEG8064904.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLAQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFDFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LATAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            11056..12468
                     /locus_tag="SFZ04_000602"
     CDS             11056..12468
                     /locus_tag="SFZ04_000602"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEG8064905.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLREFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNKIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNVNNILSEFFNHGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEAKNIKKEILDWMQK"
     gene            12465..13184
                     /gene="kdsB"
                     /locus_tag="SFZ04_000603"
     CDS             12465..13184
                     /gene="kdsB"
                     /locus_tag="SFZ04_000603"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEG8064906.1"
                     /translation="MIIIPARLKSSRFHEKILCDVGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDSNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLLSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYEKALKIYLEK"
     gene            13271..14611
                     /locus_tag="SFZ04_000604"
     CDS             13271..14611
                     /locus_tag="SFZ04_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064907.1"
                     /translation="MSIFSINDNSNYNSILSQAKANKESKENSKISFANSFLKQNASK
                     LNEIQNTNSQTLVRSEVLNSINTTNTSNNTNFSISSKTNSPNYDISSEFKNSIYTLKY
                     KQADISTSTNTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIKKAAENDPVVS
                     STKEYLGVSEYYTNIDMAETIKQYYNLFSNALGQSFPNDKTSFSEADINSMPKGYAIN
                     GIKSMDFNDPGNRMNITHLRDFSNSSIANIYQTPEQMKEAESLYIQSGSLIDGINGHS
                     FGLSLEEIKNVSKGEDWQFNPDMSVYPQNEDGSYSKEALFMSFLKSYGSGQPVESPKT
                     TLNPKVEAYNRAMAKESFNGDSIALNDIMTGKVDFASLLKGYAQDGWLDADIYAMEKG
                     VAWQNTSIGYGGAWFDNQFNQTKANGWKASNQSINSYVGSIMDRLNNLIGQTRV"
     gene            complement(14669..16096)
                     /locus_tag="SFZ04_000605"
     CDS             complement(14669..16096)
                     /locus_tag="SFZ04_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEG8064908.1"
                     /translation="MLINTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLAYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFTILALRFSFLFNLFSLPFALLSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINNNLSQDTQIYIAEAGAR
                     LKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAFLHSST
                     QKEGDKLISLYDEKLSLIHSSLEGLEFKVDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(16097..16816)
                     /locus_tag="SFZ04_000606"
     CDS             complement(16097..16816)
                     /locus_tag="SFZ04_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG8064909.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLTLPQILILHGWGANKELMKQS
                     FYPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPMMYETFKNVVDEDFGEIFAKQKAKSLVFWGKSDEATPLYCGEKMHQLLKNSTFYPL
                     EGDHFFFLKYSAFIAQKIKEI"
     gene            complement(16818..17033)
                     /locus_tag="SFZ04_000607"
     CDS             complement(16818..17033)
                     /locus_tag="SFZ04_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEG8064910.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            complement(17093..18133)
                     /locus_tag="SFZ04_000608"
     CDS             complement(17093..18133)
                     /locus_tag="SFZ04_000608"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEG8064911.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMVRKGQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFSTTLNALADQISLEKMIKISYN
                     FLHSINGQKGKL"
     gene            complement(18143..18694)
                     /gene="ruvA"
                     /locus_tag="SFZ04_000609"
     CDS             complement(18143..18694)
                     /gene="ruvA"
                     /locus_tag="SFZ04_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEG8064912.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATGTSELIKEALKKLG"
     gene            complement(18670..20529)
                     /locus_tag="SFZ04_000610"
     CDS             complement(18670..20529)
                     /locus_tag="SFZ04_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8064913.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     IPLNKTIQITVAQGIDPIESQDESLILAYKEKTKNYTIDEKRSGIIVVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFVEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDSNYDE
                     EFAILGEQISKLNHKMNKIRQYILSSKNGILSVEKKITELKNQGQNVPIQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            20633..>20851
                     /locus_tag="SFZ04_000611"
     CDS             20633..>20851
                     /locus_tag="SFZ04_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEG8064914.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKA"
BASE COUNT         7211 a         2695 c         3519 g         7426 t
ORIGIN      
        1 aaaaaaaaag gagctttttg cgttagtgta atgatgcaat ttagccttat agttttttta
       61 ttttgtcttt tggtaagttt tttctcctct ttttttacca agctttttgc ttttgggttt
      121 aacgcagata ctatagcttt agcggctcct ttggtggcga ttaatttttg gtatttgttt
      181 tttatttttt tagttacttt tttaggagct attttaaatt atagacaaaa atttttcatt
      241 acctcttttt ctgcggcatt atttaactta agtattgtta tagctgcctt ttttgtggat
      301 aaaaatgcac cgcaaaatac actttattat ttttcttatg caacggtttt aagtggggtg
      361 gcacagctta ttttacattt gcttgtttta aaaaacaatc ctgtaatacg tgctatgact
      421 ttaagtataa aatttaaaaa agccaaggcg aaattacaag gtttttatgg caattttttt
      481 catggagttt taggttcttc tgcgactcaa tttagctcat tgcttgatac aactatagct
      541 agttttttaa tgagcgggag tatttcttat ctttattatg caaatcgtgt cttccaactc
      601 cccctggcac tttttgctat tgctttaact caagtttctt ttccaaaaat tttaaaacat
      661 ttaaaaagtg atcaagaaaa tttagcctta aaatttatgc aaagagcatt agcactttta
      721 agcattttgc ttattgcttc tagtattgta ggttctgtgt ttgctttgga aatttcaaag
      781 cttttatttg aaagaggaaa tttcactcac gaagatagtg tgattacggc ttatgttttg
      841 attgcttatc ttatagggct tttacctttt ggtttgcaaa agcttttttc tttgtggctt
      901 tatgcaaaat ttaaacaaaa aacagcagct tggatcgcgg taaaatcttt aattatcagt
      961 gctttatgtt ctatggcttt tatatttttg attaaagatg aaagtttaaa ggttattgca
     1021 gtggcacttt caagctctat tagtgctttt tatttgcttg gagctaatat caaagaattt
     1081 ggttttaaga aattttttgc tttaatatct attaaaattt gcttattggt tatagttgct
     1141 ttgattgttt ttacgatctt gcttattttg attaaacctt atattttaag tttttttata
     1201 ggaattttta caagttttaa aggagttttt taatgagatt attagacagt gtaacaaaag
     1261 agaaaataaa acttgataaa aaagatatta gtatttactt atgcgggcct acggtttatg
     1321 atgatgcaca tttaggacat gcaagaagta gtgtttgttt tgatcttttg cgtagggttt
     1381 tacttgctca gggcaatagg gtaaaatttg ctagaaatta tacagatatt gatgataaga
     1441 ttttgaaaaa aatggctcaa agtggtcaaa ctttagagga aattacggaa ttttatatta
     1501 aaagttatga agaggatatg agggttttaa atgtattaga tcctgatttt aaacctcgtg
     1561 caacgcatta tataacagct atgcttgatt tgattaaaaa gcttgctaag gatgggtttg
     1621 tttatactct agaagatgga atttattttg atacaagtaa agatgaaaaa tatttaagcc
     1681 tatcaaatcg caatttagaa gaaaatatct ctcgtctaag taatgaagtg caaaaaagaa
     1741 atgaaagcga ttttgtgctt tggaaatttg atgaaaattt ttacgaaaat gaatttggca
     1801 aagggcgccc aggttggcat actgaatgtg ttgctatgat tgattctatt tttgaaaata
     1861 ctcttgatat acatgctgga gggatagatt tgctttttcc tcatcatgaa aatgaagctg
     1921 cgcaatgtcg ttgtggatgt aagagaaaat tagcaaatat ttggcttcat aatggttttg
     1981 taaaaatcga tggcgaaaaa atgagtaaaa gtttaaataa tagttttttc ataaaagatg
     2041 ctttaaaaga atttatgggc gaagctttaa gattttatct tttgagttct cattatagat
     2101 ctcattttaa ttattcttta ttggatttag aaaatgctaa aaaacgttta gataaatttt
     2161 atcgccttaa aaaaagattg gatttaggtg aaatttctga ttttgatgtt ttaaatgata
     2221 ttgaaataaa aagcgaaatt gctaagcaaa ttttagagat tttaaatgat gatttaaacg
     2281 tttctaaagc cttagctctt ttagatgatt ttataaataa tgcaaattta gagttggata
     2341 aagaaagcaa aaataaaatt ttaaaacaaa atatcaaaga agctttaagt gagctagcta
     2401 aaatttttgg ctttggtttt atggatacaa ctttatattt tcaatggggt gtaagcaaag
     2461 aagaacgaga agagattgaa aagttaattt tagaaagaac tgaggctaag aaaagcaaag
     2521 attttaacac agctgataca ataagggaac aactaagtag taaaaaaatc actcttttag
     2581 atactccaaa tggaacaatt tgggagaaaa taaatgcata atgagatgaa tttaaaagag
     2641 gttttaatac gctttaagcc cttttataaa agatattgga agcaatttgc tatagctatt
     2701 tttggtatga ttttagcaag cggaggaact gctggaagtt tttatgcttt agagcctatt
     2761 ttaaattata ttttcgttga aaaaaatgaa gctttacttt atacagtgcc ttttttgcta
     2821 gtattgatgt atttttttaa aaatcttgga acttatctac aaagttttta tgtttccttt
     2881 ataggaacag atatgttaag agtattgcgt gctagggttt taaaaaatgt tttacgcttg
     2941 gatatggatt tttttaaacg ctatagaagc ggagagcttg taagtcgttg tactaatgat
     3001 attaatgcac ttcaaagtat agtatcaaat attattcctg atttttttag agagctttta
     3061 actgctatag gactgcttgc ggtagtcttg tatcaaagtc ctactttggc tttttttgct
     3121 ttagtgattt tgcctttagc tatttttcct ttggtatggt ttgctaaaaa acttaaaaaa
     3181 tatgcaagaa atatacaaga aacaaattcg gatttacttt cttatttggg tgaaattttt
     3241 tcaaatattg aattgatcaa agctaatgat aatgaaaaaa aagaaagtga taaattttct
     3301 aagcataatg atattttatg taaattaaac ctaaaatccg cacgtattga tgcacttaca
     3361 agtcctttaa tggatatgat gggttctgtt ggggttgctg tggtgattat tgtagggggt
     3421 agagaggtta tcaatggttc tatgagtgtg ggaagtttta tcagttttgt ttcggcactt
     3481 tttgcgatat atactccttt aaagcgtctt tcgtctttat atggaaaact tcaaggtgct
     3541 gttgcggcaa gtgaaagaac tttttattta ttggatttag aacctcaaat taaaggtgga
     3601 agcaaagaat taaaaaacat tgaaaaaatt agctttgaaa atgttgaatt tgcttatgaa
     3661 aacccgcata aaagtgtttt aaaaggcgta aattttgatt ttgttaaagg gcaaatgctt
     3721 gctcttgtag ggacaagtgg gggaggcaaa tcttctatta ttaatctttt gatgtatttt
     3781 tatgaaaagc aaaaaggtaa aattttactc aatcaagaag atattagcac ttttaccata
     3841 gaaagcttac atgctaaaat aggacttgta acgcaaaata tttatctttt taatgatagt
     3901 tttgctgcaa atattgctta tagcgaagag ttagaagaag aaaaagtcat ccaagcttta
     3961 aaattggcca atgcctatga atttgttaaa gaaatgggcg ggatttgggc tgaagtgaaa
     4021 gaacatggta aaaacttaag tggaggacaa aaacaaagaa tagcaatcgc tagagcttta
     4081 tataaaaatc ctgatgtgct tatttttgat gaagcaactt cagctttgga taatgaaagt
     4141 gaaaaagcaa tagttaaaac tatagaaaat ttaaaacaag acagattgat tttagtggtt
     4201 gcacatcgtt taagcactat agaaaatgca gataaaatag tagtattgga taagggtaag
     4261 gtattggcaa taggtaaaga tgaagagctt ttgcaaactt gttctttgta tcaaaaattt
     4321 aaaagcaaag aaaaaacaaa gcctagcttt agttaatttt agttagaatt ttaaaaagga
     4381 ttaaaaaatg gcttatgaaa tgataaaacc tttacttttt aagttaaacc ctgagtatac
     4441 acatgctttg gttgaatgta gcttaagggc tttaagtgct agttttccag gagctttaag
     4501 ttttttagca cacaaatata tagttgataa tgagagttta aggcaaaatt tacttggact
     4561 tgattttaat aaccctgtgg gtttagcagg aggctttgat aaaaatgcta ctatgataag
     4621 acctttgagt gctttaggat ttggcttttt agaagtggga acttttactc caaaacctca
     4681 agaaggcaat gaaaaaccac gtctatttag acttgtaaaa caagaaagta tacaaaatgc
     4741 tatgggtttt aacaacgaag gtgctgaaaa gattgcttta agacttgcaa aaacttatcc
     4801 ttttgtttta cccttaggag taaatatagg gaaaaataaa atcactccaa atgataaagc
     4861 cttggaggat tattttactt tgtttagaga ttttaaggat ttatgtgatt attttatcgt
     4921 taatatctca tctcctaata ctaaaaattt aagagagtta caaaatgatg attttttaaa
     4981 taccttgctt gaagaagcca aaaaaattac ttctaagcct attttgataa aaattgctcc
     5041 tgatatgaaa atagatgatg ctttaaattt atgtgaaaat gctattaaaa aaggtgcaga
     5101 tgggtttata ttagccaata ctagtgttga ttatagctta ctagataata atcgtacttt
     5161 tggtggtatt agtggaaggt tgattacaga aaaaagtggt atttttttca aagaagtagc
     5221 taaaattctt tttggcaaaa ccttgcttat tgcaagtgga gggattgata gtgctgatat
     5281 tgcttatgag cgtattaaaa atggggctaa tttggtgcaa gtttatacag ctttgatttt
     5341 taaaggtcct tctttggtaa aaaatatcaa tcaaaatctt atagagcttt taagaaaaga
     5401 tggtttttta cacattagcg aagctgttgg ggtaaattta aaatgattgc ttatgaaaaa
     5461 attcaattaa aaaacaagct tgaagtttat gctttgcctg taaataaaaa tagcgatgtg
     5521 attagcgttg atatttttta taaagtaggt tcaagaaatg agatcatggg aaaaagcggc
     5581 atagctcata tgctagaaca tttaaatttt aaaagtacta aaaatttaaa agctggcgaa
     5641 tttgatgaga ttgttaaggg ttttggtggt gtggataatg caagcacagg ttttgactat
     5701 actcattatt atattaaatg tgcgaagaaa aatttagata aagctttgga actttttgca
     5761 gaacttatgg cgaatttaaa tttaaaagat gaagaatttc agcctgaaag agcagtggtt
     5821 ttagaagagc gtagatggag aacagataat aatcctttgg gatatcttta ttttagactt
     5881 tttaatcatg catttatgta tcatccttat cattggactc ctataggttt ttttaaagat
     5941 atagaaaatt ggagcattga agatattaaa gaatttcaca gtatttacta tcaacctaaa
     6001 aatgcgattt tacttgtaag tggcgatata gaaagtaaag aagtttttga gctttcaaaa
     6061 aaacattttg aaaagattaa aaatactaag actatgccta aaattcacac aaaagagcct
     6121 aagcaagatg gagcaaaaag aatatatttg cataaaaact cagatactga actattagcc
     6181 cttgcttata aaattccaaa tttcaagcac aaagatatac ctgctttaaa tgctttatcc
     6241 gagcttttag gaagtgggaa aagttcttta atgagtgaaa ttttgattga taaattaaat
     6301 ttaatcaatg attattatgc ttatgttaat gattgtatag atgacaattt atttattttt
     6361 atttgtaatt gtaatcccaa tgttaatgca gaaaaagtag aaaaagaact tttaaaaatc
     6421 attgataaac ttaaaatggg taaaatttct caaaaagatt tgcaaagagt gaaaaataat
     6481 gtcaaaagtg attttatttt ctcacttaac aatgctagtg cagtggcaaa tatttatggt
     6541 tcatatctag caagaggaga tatcaatcct ttgttaaatt atgagaaaga tatacaaaat
     6601 ttggaattaa aagatttgat ttcttgtgct aaaaaatatt ttattcaaga aaattcaact
     6661 acggtaattc taagaaagga ttcaaatgga taaaaatatt atcattgggg cgatgacggc
     6721 tcttattaca ccatttaaaa atggaaaagt tgatgagcaa agttatgcaa gattgattaa
     6781 aagacaaata gaaaatggca tcgatgcagt agttccagta ggaacaacag gagaaagtgc
     6841 aactttaacc catgaagaac atagaacttg catagaaata gccgttgaga cttgtaaagg
     6901 aactaaagtt aaggttttag caggtgcggg aagtaatgca actcatgagg cagtgggttt
     6961 ggctaaattt gctaaagagc atggtgctga tgggatttta agtgtggcac cgtattataa
     7021 taaacctacg caacaaggac tttacgagca ttataaggct attgcgcaaa gtgtagatat
     7081 tcctgtgctt ttatataatg ttccaggaag aacaggttgt gaaatttcaa cggatactat
     7141 tatcaagctt tttagagatt gtgaaaatat ttatggagta aaagaagcga gtggaaatat
     7201 cgataagtgt gtggatttgc ttgcacacga acctagaatg atgcttattt caggggaaga
     7261 tgcgatcaat tatcctatac tttcaaatgg tggaaaggga gtgatttcag taacttcaaa
     7321 tttattaccc gatatgatta gcgctttaac tcattttgct ttagatgaaa attataaaga
     7381 agctaaaaaa atcaatgatg agctttataa tatcaataaa attttatttt gcgaaagtaa
     7441 tcctattcct attaaaacgg ctatgtattt agctggattg atagaaagtt tggaatttag
     7501 acttcctctt tgttctccaa gtaaggaaaa ttttgctaaa attgaagaag tgatgaaaaa
     7561 atataagatc aaaggatttt aatgaataca gaatttcaag gaaaaacttt agtgattagc
     7621 ggtggaactc gcgggatagg caaagctata gtttatgaat ttgctaaagt gggtgcaaat
     7681 atagctttta cttataattc taatgcgcaa attgctgatg aaatggttca agatttggag
     7741 aaaaattata aaatcaaagc tagagcttat gagtttaata tcttagaacc tgaaacctat
     7801 aaagaacttt ttgaaaaaat tgatgtggat tttgatagag tggattattt tatctcaaat
     7861 gctatcattt caggacgtgc ggttgtaggt ggctatacta aatttatgaa gttaaaacca
     7921 aagggaatta ataacatttt tacagccaca gtaaatgctt ttgttgtggg cgcacaagaa
     7981 gcagctaaaa ggatggaaaa agtagggggt ggaagcatta tttctatctc atctacagga
     8041 aatttagtgt atatagaaaa ttattcaggt catggtacag caaaagccgc tgtagaagct
     8101 atggcaagat atgcggctac tgaacttgga gaaaaaaata tccgtgtaaa tgtcgtaagt
     8161 ggtgggccta ttgaaactga tgctttaaga gcttttacaa attatgaaga agtaaaacag
     8221 gctactataa atttaagccc tttaaatcgc atggggcagc ctgaagattt ggctggagca
     8281 tgtctttttc tttgttcaag taaggcaagt tgggtgacag gacatacttt catcgttgat
     8341 ggtggtacaa cttttaaata aaaattaaga aaaatcaatg gatttttctt aaaaatattt
     8401 ttcaatcaag ttttaatttc caccctaaaa aaacacttaa taatgcaagt aaaaaaataa
     8461 aatttaaagt ccaattacca aaacctataa aacctataga taatacgctg taaaaaaatc
     8521 ctcctacagc tgaataaata caaatcgtac ttaaagatcc attttctgcc atttttttac
     8581 atgggcagat tttataaaat tttttatcat taaattgatt tttcttttta tttcccaaaa
     8641 ataaaccaaa aagggcaaaa agatttaaaa aaataaaagc atataataaa atttgatcta
     8701 attccatttt aatatacctt aaaaatatct aagccaagag ggtagatgga cttgctcttc
     8761 ttttaaagta gtttcttgtc catgtcctgg caaaagttta aaatcttctt tgtaagtcat
     8821 aactttttct aagctttgtt tcattaaatt tgcatctgaa taaggaaaat cccatcttcc
     8881 tatgcttcta taaaataaaa aatctccact aaacatgata tttttaccta caatttctat
     8941 catagtgcaa cctggtgtat gtcctggtaa aaagtgaaat ttaaagtcaa gtccgcctat
     9001 agaaatgata ttttcatcat caatcaaata atccgctttg ctaggcataa aaccttgatt
     9061 aaaaggatct tcaagcataa aagtatcatt tttatgaata taaatgggga tttgataggc
     9121 ttgttttact ttttcattat cccaaacatg atcgtaatgt ccgtgagtgt ttaaaatcgc
     9181 taaaggattt tttacatgtt ttttgatgaa atttagcgca tcaaaaccag gatcaattat
     9241 aatttctcca tgctcaccaa ataaaatata acaatttgtc tcataagctc cacaagcttg
     9301 tttgataatt tgcatttttt gcctctttaa taaaaaattt gccttaaata aatataatta
     9361 tacattaaat ttttaaaagg caagctttat ggattggcaa aagattacgg aaaaaatgtg
     9421 tgattttata caagaaaaag tgaaaaattc tcaaagtcaa ggtgtggttt tggggcttag
     9481 tggcgggatt gattctgctt tggtagcaac gctttgtaaa agagctttaa aagagaatgt
     9541 ttttgctctt ttaatgccaa ctcaaatttc aaacaaagcc aatcttgaag atgctttaag
     9601 gctttgtgcg gatttaaatc ttgaatataa aatcatagaa attcaaagca ttttagatgc
     9661 ttttataaag caaagtgaaa ataccactct agtatctttg ggaaattttg cagcgcgtat
     9721 tagaatgagt ttgctctatg attattctgc tttgaaaaat tctttagtca taggcacttc
     9781 taataaaagc gaattgcttt taggttatgg tacgatttat ggggatttag cttgtgcttt
     9841 taatcctata ggatcgcttt ataaaagtga aatttatgcc ttagcaaaat accttaactt
     9901 gcatgaaaat ttcatcaaaa aagctccaag tgcggatctt tgggaaaatc aaagtgatga
     9961 ggcggattta ggtttttctt atgcaaaaat cgataaaggt ttaaaagctt tagaaactaa
    10021 tgatgaaaaa cttttaagaa cgcttgatcc ttctttgatt gctatgttaa aaaatcgcat
    10081 gcaaaaaaat gcttttaagg gaaaaatgcc tgaaattttg gaaatttaaa caatgaatga
    10141 agaaaaaaat tatgaacttt ggcttgataa ttattttttt aagcccaatt tttggcaaaa
    10201 atgccttgct tttatacttt tacctttaag tgtgctttat gctttttttg cgattttaaa
    10261 tacttttttt cgtaaaaaaa tagtttttaa aaagcctgtt attagcgttg gtaatttaag
    10321 ttttggaggt aatggaaaaa ccccgctttg taaagctata gcaagggaat ttgatggcgt
    10381 ttttatagta cttaggggct ataaaagaaa gtctaaaggt ttgtttgttg ttaaaaatca
    10441 aaatgaaatt ttatgcacct tagcacaaag tggcgatgaa gctatggagt atgcttttga
    10501 agaaaatatc aaaggtgtga ttgtgagtga agatagagta aaaggtattg aaaaagcctt
    10561 tgaattggga gctaaaatcg ttgtactcga tgatgctttt tctaaatttc atattaaaaa
    10621 atttgatatt ttgcttgaaa gcaaaatcaa accttatttt gattttactt taccaagtgg
    10681 agcttatcgt ttgccaaaat tttatgaaaa aagggctgat tttattgcat tagaaggcag
    10741 ggattttgtg cgttattctt ttgtaaaaga aaatccaaag gctgttttgg caactgctat
    10801 tgctaaacct tttagattgt atgagcattt tatcaaagca agggcttgtt atttttttaa
    10861 agatcattat gagtttaaaa aagaagaatt agaaaatttg ctaaaaaaac ataattgcga
    10921 tacactaatg cttactttta aggattttgt taaagttaaa gattttggtt ttaaatgtca
    10981 aattatagaa ttaaatatag aattaaaaga ttcattaagg gaaaaaataa aaacttatat
    11041 caaggagttt gagcaatgaa attagtcgag agtagaaatg taaataatgt atcaagtttt
    11101 aaggaagctt tgattaaccc aaacgcccca gaaggagggc tttactcgcc tttaaatttg
    11161 cctatttttg aaggagaaaa atatgccaat ttgtcttata aagattttgc tttaaagctt
    11221 atagaaagtt ttggttttgg cgaagaagag ctttttaaaa aggctttgaa aagttacgaa
    11281 agctttgatg ataaaaatac acctatttct ttgcaaaaaa tctctgaaaa aacctatatt
    11341 aacgagcttt ggcatgggcc tacaagagct tttaaagata tggctttaca gccttttggc
    11401 gtgcttttaa gagaattttc aaaggataaa aatattttaa ttatttgtgc tacgagcggc
    11461 gatacaggac ctgcaaccct aaaaagcttt gaaaatgcaa aaaatgttaa agtagcttgt
    11521 atgtatccaa aaggtggcac aagtggagtt caagagttgc aaatgcgagc tttagataag
    11581 gataatttga aagtttttgc tatagatgag gattttgacg cagcgcaacg cactttaaaa
    11641 gaattgcttt tttcaaaaga ttttcaaaac aaaattaaag ctttaaatta tgagctttgc
    11701 gcagcgaatt ctgtaaattt tgggcgtatt ttatttcaga ttatttatca ttattatgcg
    11761 agtttaaaac tttttaatga gtttttagaa gaagtacaaa tcattgttcc aagtggaaat
    11821 tttggcaatg ctttaggagc tttttatgct aaaaaaatgg gagctaaaat ttcaaaaatc
    11881 aaaatcgctt caaatgtgaa taatattttg agtgaatttt ttaatcatgg cgtttatgat
    11941 ttgcgtgaaa aaagtcttaa gaagactatt tctccagcta tggatatact tatttcatct
    12001 aatatcgaaa gacttttgtt tgcgaaattt aaagataaaa gaaccaaaga actgatgaat
    12061 ttgttgaaaa atgagagata ttttaaactt gaaaaagaag aattgcaaag tttacaagaa
    12121 gattttgagg cggatttttg caccgatgaa gaatgtatgc aatttatcaa acaaagcaag
    12181 attttaatcg atccgcacac cgcaacttgt tttaaaatgc ttgatccttt aaaacctagc
    12241 attattacct ctacagcaga atggacaaaa tttactccaa gtatgataaa agctttatac
    12301 gatagggatt ctaagaatga aaaagaagat ttaaaattta tagctaaaga gtttaatgtc
    12361 caagttaaag atgaaatttt ggctttattt gacttgaaaa atagcgatga aaaggtattt
    12421 gaagccaaaa atataaaaaa agaaatttta gattggatgc aaaaatgatt attattcctg
    12481 caagattaaa atcaagtcgt tttcatgaga aaattttatg tgatgtaggt ggagtgccta
    12541 tgtttgtggc tactgcaaga agggtaagta gtgtggatga agtttgtata gctttagatg
    12601 atgaaaaggt tttaagtatc gctaaagaat atggtttaaa tgcagtttta acaagcaaaa
    12661 atcatgaaag cggtacggat aggattaatg aagcttgtaa gaaactatct ttaaaagatg
    12721 atgagattat tatcaatgtc caagctgatg agccttttat agaatgtgaa aatttattaa
    12781 aatttaaaga atttgcaagt tcttgcttgg ataaaaaagc ttttatggcg agttgttata
    12841 aaaaaatcac tcaagaagaa gctatggatt ctaatttggt taaagtgctt tgcgataaag
    12901 aaggatatgc tttgtatttt tcaagagcta aaatccctta tgaaagagaa aattacgagg
    12961 aaagttttaa agggcattta ggcatttatg cttatagtgt aaaagcttta agagagtttt
    13021 gttctttatt aagttctgca cttgaaagag cggaaaaatt agagcaatta agagctatag
    13081 aaaatggtaa aaaaatcaaa atgcttgaaa tttcaacaac aagcatgggg attgatacca
    13141 aagaagacta tgaaaaggct ttaaaaattt atttagaaaa ataactccac cccaaaatgg
    13201 aacagatctt gcttatatta ttttaatata tttagattga aggcaaaaaa atctaaatca
    13261 aggaattaat atgagtatct ttagcatcaa tgataactca aattataatt ctatactttc
    13321 acaagcaaaa gctaataaag aaagtaaaga aaattctaaa ataagttttg ctaattcttt
    13381 tttaaaacaa aatgctagta agttaaatga aattcaaaat acaaattcac aaaccctagt
    13441 aagaagtgaa gtattaaatt ctattaatac aacaaatact agcaataata ctaattttag
    13501 tataagtagt aagacaaatt ctcctaatta tgatatatca agtgaattta aaaactctat
    13561 ttatactcta aaatacaaac aagcagatat aagcacttct accaatacag cctatggtta
    13621 tagtgtagat aaagatggct atatgggaag tgattttaac aaagccgcag gattacctga
    13681 agattttaag atacataaat ctactttgga tgagattaaa aaagctgctg aaaatgatcc
    13741 tgttgtttca agtacaaaag aatacttagg cgtaagcgag tattatacta atatcgatat
    13801 ggctgaaacc ataaaacaat attataatct tttttctaat gctttaggtc aaagttttcc
    13861 aaatgataaa acaagtttta gtgaagcaga tataaattct atgcctaagg ggtatgctat
    13921 aaatggaata aaatcgatgg attttaatga tccaggcaat agaatgaata tcactcacct
    13981 aagagatttt tcaaattctt ctattgcaaa tatttatcaa acccctgaac aaatgaaaga
    14041 agctgaaagt ttatatatac aatcaggatc tttaatagat ggcataaatg gacatagttt
    14101 tggtttatct ttggaagaaa tcaaaaatgt ttctaaaggt gaagattggc aatttaatcc
    14161 tgatatgtca gtttatccgc aaaatgaaga tggaagctat tctaaagaag ctttatttat
    14221 gagtttttta aaatcatatg gtagcggaca acctgttgag agtccaaaaa ccacacttaa
    14281 tccaaaagta gaagcttaca atagggctat ggctaaagaa agttttaatg gtgatagcat
    14341 tgctttaaat gacattatga caggcaaagt tgattttgca agtttgttaa aaggttatgc
    14401 acaagatggc tggcttgatg cagatatata tgcaatggaa aaaggagttg cttggcaaaa
    14461 tacaagtata ggttatggtg gagcttggtt tgataatcag tttaatcaaa caaaagctaa
    14521 tggttggaaa gcaagtaacc aaagtatcaa ttcttatgtt ggatctataa tggatagact
    14581 taataatctt atagggcaga ctagggttta ggaagtattt gcacgaagtc aaattaaaaa
    14641 tgatgacatt tgcaaatact tatgcaaatc acataaagct aggtgcatcg tttgaaaaga
    14701 gtatcaaatc tccatgtttt gtttctttag ctagagtttg aactagctga ctcttttctt
    14761 taagtataat ggtttttatt tttaactctt ttttgaaaat ttcagcattg atttgtgcac
    14821 taatgatagc aagatcaaaa cactcattga tgattttagc aagttttata ttttcttctt
    14881 cgcttacttc tactatacca ggacttacta aaactttgcg tcctttatag cttttacaaa
    14941 gtttatagct tgtgctcata cctttaaaat ttccattaaa accatcatct atgataaatt
    15001 taggctctct tgaaagcact tgcaagcgat gttctacgga atttatattt aaaacttgct
    15061 tttgaatttt ttctagtttt atgccaagat aatgagcaca aagtatacaa acacaaagat
    15121 tttgcgcatt aaaatcccct aaaatttgac ttttaaaatc ataggattta ttttctatat
    15181 cgactttaaa ttctaaacct tcaagacttg aatgaataag acttaatttc tcatcataaa
    15241 ggctgatgag tttatctcct tctttttggg tgctagagtg taaaaaagcc ttttctagtc
    15301 ttttggaatt taaggcttca agtttggttg agcggatatt ttcaacactt ttaaaatact
    15361 ctaaatgtgc attgcctatc tctcctacta tgctgatgtg aggttgtaaa aaacgagtga
    15421 tttcatcaat atcgccttta agtctagcac ctgcttcagc tatgtaaatt tgagtatctt
    15481 ggcttaaatt gttattgata tcagcaacta tacctagcaa ggtattgaca gatcgtggtg
    15541 ttttgtagct tttaaagtca tcttttaaaa gttcgtataa aaaattttta atacttgttt
    15601 ttccaaaact tgcggtaatg agtatgattt ttaaattttc attggctctt agtttggctt
    15661 tggcttgttt tttataatat aaatttgtaa aaaactcata aattttaaga ctcaataaag
    15721 caaaaggaag actaaaaaga ttaaaaagaa aagaaaaacg caaagcaagg atggtaaaaa
    15781 tagcattata aacaaaaaca aaaacaaaaa accatttaac cttacttgta aaaacaagct
    15841 ttttatctat gcctttattc caaaaataca aaatcggagt atggatcaat gcaaaatatg
    15901 ccaaagagta taaaggaaaa gctaagaata aaaaataagg gataaataaa aaatacaaat
    15961 gccataaagg tttatgataa tgaaaaaaca cgcgtttaaa tttataagaa taccattgta
    16021 aagcactcat aagataaaaa gctatacaaa aattaaaaaa taaagaattg ataaaataaa
    16081 gagtattgat aagcatttaa atttccttaa ttttttgagc tatgaaagca gaatatttta
    16141 aaaagaaaaa atgatccccc tctaaaggat aaaaagtgct attttttaaa agttgatgca
    16201 ttttttcacc acaatacaaa ggcgtggctt catcgctttt tccccaaaaa accaagcttt
    16261 tagccttttg cttggcaaaa atttcaccaa aatcctcatc aacaacattt ttaaaggttt
    16321 catacatcat agggctaaga tttgctccat ctttactagc aaaatagcga taaaattttc
    16381 ccaaaccaaa gagttttaaa attttaaaaa tacggatttt aaaacgcact tttagggatt
    16441 ttttagctaa aattcctgca cttgaaagta agattagggt gtctttttct tttgcgagta
    16501 gggtgcttac ttttccacca aaagaatgcc ccatgaaaaa acagacattg agtttttttt
    16561 gttttaaaaa aagttctgtg atattggcat aatcttgagt gtttaaaatt tcttccacac
    16621 ttgaatttcc aaaacccgcc aaatccatat aaatttgaca aaagtctttc aaaaaaggat
    16681 aaaaactttg cttcataagt tctttattgg ctccccagcc gtgtaagata agtatttgcg
    16741 gtaaggtaag atcacctaaa atttcataag aaatttgata agttttgttt ttataagaaa
    16801 gttgagtttg agccatttta agccttttga tttttgtaga tattttctaa aagttgcatg
    16861 gcgttttgta agcgttcaaa ttccttcatg ctaagcatta cagcttcaaa tttgttattt
    16921 tttaaaataa ctatttttcc actttcgctt tttttgagtt tttccataat ggggctaaaa
    16981 tttcttacca cttcggtggc agtgtaaatt tcatcttgtt taaaagagag catttttctt
    17041 cctaaaatac gctaaatttt atgtataatt tagcgtattt tgacttaaaa gcttataatt
    17101 ttcctttttg tccgttgata gagtgaagga agttgtagct gatttttatc attttttcaa
    17161 gtgaaatttg atcagctaaa gcgtttaaag tagtactaaa atctttaaaa agataattag
    17221 ccaaagaacc aggatttggg ttgatttcat ttaaatatat ttcattatcc agtataaaaa
    17281 aatcgcagcg tattaaagca cctttaaaca aaggattgta gatcttttta aaactatctt
    17341 tgagtttttc ttttaattct tcgcttaaat ttgcttctat aagctcattg tgtcctgaaa
    17401 agctaagata tttttgttca aagtctaaaa attctttttt ctttggctct tctatgatgg
    17461 aaaaaacaaa ctcatcattg atcatacatc ctgcaagatt gtattctttg atattgtttt
    17521 taaattcttc cactacaaga tcattatcaa attcaaaacc tacatctttg gcgtattcta
    17581 aatctttttc atcttttact atactaatac ctatgctact tccaagtctt gcaggtttga
    17641 taatgcaagg aaaactaagc ttttctttag agttttgccc ttttcttacc atggtataat
    17701 caagtgtttt tactccaacg cttttggcat aaagtttggt aagttctttg ttgaaagata
    17761 atacgctggc ttcaagccta ggtcctataa atttaataga ataaaactca aataaagctg
    17821 caatttttcc atcttctcca tctctaccat ggataagatt gatcacgcac tcgcactcta
    17881 gtttattttc ttttaaaaag cctttgctaa aaaaacctcc ttgtttgatg aaaagttctt
    17941 tttctttttt ataagctttg gtgctaaaag ttttagaatt cattttttca cttgggatat
    18001 gataaaatct tctttcttca tcacaaaaaa taaattctaa attttgatta ataacttttt
    18061 taagtactac agcacttact atactgatct catgttcata agaatttccg ccaaaaagta
    18121 ttgcaaattt cattttattc ctttatccta gttttttaag agcttctttg atgagttcgc
    18181 ttgtgcctgt tgcttgagca cttgctaaaa cacttatgat tttttcttgt ttaaagccta
    18241 gagtaagaag tgcggctaag gcttcacttt tatcatcgct tacattttca agtttggttt
    18301 ttgtatctga aagttctact ataatgcgtt tcgcactttt tggacctata ccaggtactt
    18361 ttttaagcac gctttcatcg cctaaactta acgctttgta aaaagaattt acatcaagac
    18421 tagagcatac cgccatagca gtatttgcac ccactccatt gacttttaaa agcatttcaa
    18481 acattttttg ttcatcttta tccaagaagc cataaaattt attagaatct tctttgatga
    18541 tttgagtaat aaaaaactca tgcttttctt gagtttgaat tttagcagaa caaaaaagcg
    18601 aaataaatat cccatagctt aaaccactag cacatttaac aatgataaaa gtaggttctt
    18661 tttttgtgat tattccttcg atgccgacaa ccatgctata tccttttctt cataatctaa
    18721 ttttttatgt atttctatac tttcttggtt gttttgtatg acttttttaa tacctataaa
    18781 tttagcactt tcattaacaa atgaagagta aaaaatatct tctttaggtt ctagaagtga
    18841 aaatttgatc tcattcatgt cagtccattt gccgctttta tttataaaag ttgcttcaaa
    18901 aagcattttt tgcaaattga ttaattctaa ttgtaaagat tttttgcgtt caagaagttc
    18961 tttttcttca ttttgtagtt tatttaattc aagattttgt aaagagaaat cttttagggc
    19021 tttttcgtat tgtataggaa cattttgacc ttgattttta agttctgtta tctttttttc
    19081 aacgcttaaa attccatttt tacttgataa aatgtattgt cttattttat tcattttatg
    19141 atttaactta gaaatttgct ctcctaaaat cgcaaattct tcatcataat tactatcaag
    19201 agttttaatt ttagcatgaa atttattgtt atccccgttg atgcgttcta ttgtggtgtt
    19261 ttcaaaaaac acacaagaat tattactttc taaattttct atatagattt tatcagcttg
    19321 tatatttccg cctaaacttt ttttaattct cacttcttta gctttgattg ttccaccttc
    19381 gagcaaatct atatttaaaa tttcggcttc tacaaatcct ctatgagttt ttatataggc
    19441 ttgtttggct tgaattttgg ctttagagtg tgtagtgcct tcaattttca ttttggtggc
    19501 attaagttga gtgttgcttc ctacgcttcc gactacattt aattcttcac attctatccc
    19561 aacgccagaa tttacagcat cttttacttc tgaaagaaat tttatattga ttttgacatt
    19621 tttgtctagt ccagctctta taatccctat atttttaaaa tctaccccat taaaatctag
    19681 ttcatttgca atatcaaatt tttcaccatc ttgtactaca taaccttttt ttaaggctat
    19741 atattctgtg tatccatctt gctctacttg tttaaaagct gaagaacaag aaaatttaac
    19801 tttattttca tttgcggcta aaacttttaa ggtgtgcaaa tttaagtctt ttccttcttt
    19861 accttgttta aatttggcgt gttttaaaac aacttcgttt tcatcaacaa caataatacc
    19921 tgagcgtttt tcatcgatag tgtagttttt ggttttttct ttataagcca agatcaggga
    19981 ttcatcttga ctttctatag gatcaatacc ttgtgcaacg gtgatttgta tagttttatt
    20041 taaagggatg tttttatgtt ggttgcaaaa agacattaaa tttttcttaa aatcaaaaat
    20101 gcggatacct attaaaaatt taagtttcaa catcttttta taaatatttt gcaaaagttc
    20161 tagtgctagt ttttcatgaa agtctaaatt tgtaaaatca atttgagcaa ctattttggt
    20221 taaattttta tttgcaacta gtttgactgc ttgagatgct ttgctttggt ttataccgtg
    20281 gaaaatttct attttgtatt cttgcttgat ttgaagatca ttttttaaaa aaatttcatc
    20341 tttatcaaaa agagttaatt ctttttcaga gattttttcc cattctaaat ctccaaaacg
    20401 atattgtgta gaaaacgcca ataaactaaa atcaagctca tttaagctaa ggtttgttcg
    20461 tgaagctacg cttaaaagct ctcgagctgg attttctgta taggcaataa ttttttcatc
    20521 caaagccaaa actttcccct tgtaaaaaat taagaatgta attatagtca atttttaatc
    20581 aattttagtt aaaatagttc tctttatatt ttgaaattta tgaaaaaatt taatgaagag
    20641 tttagtattt aaaaatttta ttatcaatgc tttaggaatt ttattttcaa gaattttagg
    20701 gcttgctaga gatgttttaa tagcgctttt tttaggagca gggctttata gtgatatttt
    20761 ttttgtggct ttaaaaatgc ctgctttttt tagaagaatt tttgcagaag gggcttttgg
    20821 acaaagtttt ttgcctaatt ttgtaaaagc g
//
LOCUS       DARGBD010000019        19597 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.019, whole genome shotgun sequence.
ACCESSION   DARGBD010000019 DARGBD010000000
VERSION     DARGBD010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19597
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.019"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            84..791
                     /gene="ubiE"
                     /locus_tag="SFZ04_000612"
     CDS             84..791
                     /gene="ubiE"
                     /locus_tag="SFZ04_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEG8064915.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEILD
                     YKSFSFGVSSMFIAKKL"
     gene            788..1951
                     /locus_tag="SFZ04_000613"
     CDS             788..1951
                     /locus_tag="SFZ04_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEG8064916.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGNFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            1961..3037
                     /gene="serC"
                     /locus_tag="SFZ04_000614"
     CDS             1961..3037
                     /gene="serC"
                     /locus_tag="SFZ04_000614"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEG8064917.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGICEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            3034..3384
                     /locus_tag="SFZ04_000615"
     CDS             3034..3384
                     /locus_tag="SFZ04_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG8064918.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQIWLANMQDFDAMNETYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3381..4355)
                     /locus_tag="SFZ04_000616"
     CDS             complement(3381..4355)
                     /locus_tag="SFZ04_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEG8064919.1"
                     /translation="MLKAGLKSIASYIPEKILSNADLEKIVDTTDEWITRRTGIKERR
                     IASENENSSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIVGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(4348..5334)
                     /gene="plsX"
                     /locus_tag="SFZ04_000617"
     CDS             complement(4348..5334)
                     /gene="plsX"
                     /locus_tag="SFZ04_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEG8064920.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNGNATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIVNRTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKSSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            complement(5340..5486)
                     /gene="rpmF"
                     /locus_tag="SFZ04_000618"
     CDS             complement(5340..5486)
                     /gene="rpmF"
                     /locus_tag="SFZ04_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEG8064921.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            complement(5510..5863)
                     /locus_tag="SFZ04_000619"
     CDS             complement(5510..5863)
                     /locus_tag="SFZ04_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064922.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            complement(5864..6277)
                     /gene="ndk"
                     /locus_tag="SFZ04_000620"
     CDS             complement(5864..6277)
                     /gene="ndk"
                     /locus_tag="SFZ04_000620"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEG8064923.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            complement(6390..6674)
                     /locus_tag="SFZ04_000621"
     CDS             complement(6390..6674)
                     /locus_tag="SFZ04_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8064924.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDANNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            6880..7476
                     /locus_tag="SFZ04_000622"
     CDS             6880..7476
                     /locus_tag="SFZ04_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEG8064925.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
     gene            7595..8683
                     /gene="flhB"
                     /locus_tag="SFZ04_000623"
     CDS             7595..8683
                     /gene="flhB"
                     /locus_tag="SFZ04_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HEG8064926.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(8689..9432)
                     /gene="motB"
                     /locus_tag="SFZ04_000624"
     CDS             complement(8689..9432)
                     /gene="motB"
                     /locus_tag="SFZ04_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEG8064927.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(9435..10211)
                     /gene="motA"
                     /locus_tag="SFZ04_000625"
     CDS             complement(9435..10211)
                     /gene="motA"
                     /locus_tag="SFZ04_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEG8064928.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLVEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            complement(10228..12867)
                     /gene="polA"
                     /locus_tag="SFZ04_000626"
     CDS             complement(10228..12867)
                     /gene="polA"
                     /locus_tag="SFZ04_000626"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEG8064929.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYNL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDCDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFDLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAK
                     SYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSSLQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            13031..14378
                     /locus_tag="SFZ04_000627"
                     /pseudo
     CDS             13031..14378
                     /locus_tag="SFZ04_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
     gene            14375..15382
                     /locus_tag="SFZ04_000628"
     CDS             14375..15382
                     /locus_tag="SFZ04_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEG8064930.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGIKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNAKLLKLIKERFLKGVCYENYESIT
                     T"
     gene            complement(15338..15781)
                     /locus_tag="SFZ04_000629"
     CDS             complement(15338..15781)
                     /locus_tag="SFZ04_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8064931.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFTPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(15786..18611)
                     /gene="uvrA"
                     /locus_tag="SFZ04_000630"
     CDS             complement(15786..18611)
                     /gene="uvrA"
                     /locus_tag="SFZ04_000630"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEG8064932.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYTEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSVSDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLNQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCEGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            complement(18684..19469)
                     /locus_tag="SFZ04_000631"
     CDS             complement(18684..19469)
                     /locus_tag="SFZ04_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG8064933.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGLLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
BASE COUNT         6384 a         3020 c         3197 g         6996 t
ORIGIN      
        1 tccaaaataa tcaataataa aaataaattt tgtaaattgc ttaaaaaatc aagtaaaaat
       61 ttgaaaattt acaaaggata aaaatgcaaa aacaagaaaa aattatagaa atgtttaatc
      121 aaattgcacc tacttatgat aaggcgaata gaattttaag ctttggagct gatgtagcgt
      181 ggcgcaaaaa agcttgtcaa agagtgatga gtttgtattt aaaaaaagat ttaaaaatcg
      241 ctgatattgc ctgtggcaca ggggatatga tagagatttg gcaagagagt gctttaaaaa
      301 tggaaaaaaa tattctaaat attaaaggta ttgatccaag tagtggcatg ctaaatgttg
      361 caaaagaaaa atttccaaat gtcgaattta tagaagcagg ggcgcaaaat ttacctttag
      421 aaagtcaaag tttagatatt ttaagcatta gttatggcat tcgcaatgtt gtagaaagac
      481 aaaaagcctt aagtgaattt gctagagtac ttcaaaaaga tggtattttg gtagttttgg
      541 aatttacaaa aagagaaaag ggtggattta tagcagcttg tagagatttt tatcttaaaa
      601 atattttacc aagtataggt gggataatca gtaaaaataa aagtgcttat gagtatttgc
      661 caaactctat tgaaggattt ttaagtaagg aagagttcat cttagaactt aaaaatgctg
      721 gttttgaaat acttgattat aaaagtttta gctttggcgt gagttcaatg tttatagcaa
      781 aaaaactatg acaccaacag aattaaatct taaagcaaag gctttattag aaacacattt
      841 tgatgatata gttttaagtg gagaaatttc aaaaattact ttgcatggtt caggacattg
      901 gtattttgat ttaaaagatg aaagatcaag cattgcttgt gctatgttta aaggagctaa
      961 tttaaaagtc ggatttaaac cagctgtggg gaatttttta gagctttgtg gaagtgtaag
     1021 tttatatcct gaaagtggtc gttatcaatt tatcgctact agtatgaaaa aagcaggttt
     1081 tggggatttg gaagcacagt ttttggcttt aaaagagcgt ttgcaaaaag aaggactttt
     1141 tgatccacgc tttaaaaaat ctttgccaaa atttcctaaa aaagtaggca ttatcacttc
     1201 aaaaacttct gctgctttgc aagatatgtt aaaacttatt caccaaaaag aatatttttt
     1261 ggcaaaaatt tatatttttg atgctttaac tcaaggaaat aatgctcctt tttctcttat
     1321 acaagcttta aaaaaagccg atgatatgga tttagatgtt cttattatag cacgtggtgg
     1381 aggaagcaga gaagatcttt tttgttttaa tgatgaaaat ttagcaagag agatttttaa
     1441 agcaaaaact cctattattt cagccatagg acatgagatt gattatgtta ttagtgattt
     1501 tgttgcagat tttagagctc caacgccttc agctgctata gatactttgt tttattctaa
     1561 gttggatata gagcaaagtt tggatttaat ggaagaaaaa ttaatgcaac tttggaatta
     1621 taaaatacaa aattatgaaa atttgctttt aaatttaagc aaatttttca aatttaattc
     1681 tttgccaaaa ataatagatg aaaaaataaa acaaagccat aatatagaaa agcaattaaa
     1741 tcatctattg gcaaatcaaa tgcgttataa tgaattaaaa ttagataaat tgcaaaatgc
     1801 ttatttgcaa catgagaatt tttttaataa aagcaaaaag tttatttgta tcagaaaaaa
     1861 tggtaaaata gcaaatttag aagatcttaa gagtgatgat atcgttattt taagttctca
     1921 aacttctcaa aaagaagcaa aaattttata aggatagatt atgagaaaaa tcaatttcag
     1981 tgcagggcca tcgactttac ctttagaaat tttagagcaa gctcaaaaag aactctgtga
     2041 ttatcagggt aggggttatt ctataatgga aatttctcac cgcacaaaag tatttgaaga
     2101 agtgcatttt ggagcacaag agaaagctaa aaaactttac gggttaaatg atgattatga
     2161 agtattattt ttacaaggtg gagcaagttt acaatttgct atgattccta tgaatttggc
     2221 tttaaatggg atttgtgaat atgcaaatac aggagtttgg acaaaaaaag caattaaaga
     2281 agcacaaatt ttaggtgtca atgttaaaac cgtagcaagt agcgaggaaa gtaattttaa
     2341 tcatattcct agagtggaat ttagagataa tgctgattat gcttatattt gttctaacaa
     2401 tactatttac ggcactcaat atcaaaatta tcctaaaact aaaactcctt tgattgtgga
     2461 tgcatcgagt gatttttttt ctagaaaagt agatttttca aatattgctc ttttttatgg
     2521 cggagtgcaa aaaaatgctg gaatttcggg tttaagttgt atttttatcc gtaaagatat
     2581 gttagaaaga tctaaaaata aacaaattcc tagtatgtta aattatttga ctcatgctga
     2641 gaatcagtcc ttgtttaata cgcctccaac ctttgccatt tatatgttta atcttgaaat
     2701 ggattggctt ttaaatcaag gcggacttga taaagtacat gagaaaaatt ctcaaaaagc
     2761 tgctatgctt tatgagtgta ttgatttaag taatggattt tataaaggac atgcagataa
     2821 aaaggacaga tctttaatga atgtgagttt taatattgct aaaaataaag atttagagcc
     2881 tctttttgta aaggaagccg aagaagctgg aatgatagga cttaaaggac atagaatttt
     2941 aggaggaatt cgtgcaagta tttataatgc gcttaatttg gatcaggtaa aaaccttgtg
     3001 tgaatttatg aaagaatttc aaggaaaata tgcatgataa agcgttttga tgagtgcgat
     3061 agaatgtcgc aaattattgt ttttgataaa tattttaaga ctgcaggaca agtggctttt
     3121 gaacctagcg gagatattaa aaaacaaacc aaagaagcac ttgcagaact tgatgctttg
     3181 tttgaaaaaa taggcgcaag caaaggagat ttgattcaaa ttcaaatctg gttagctaat
     3241 atgcaagatt ttgatgcaat gaatgaaact tatgatgctt ggattaaaaa ttatcctaaa
     3301 cctgttagag cttgtgtagg aagtgcttta gcagagggtt atttggtaga aattcaagct
     3361 tttggaaagc taagagagaa ttaaaaattc tctcctccaa attttaaaag cgcagatccc
     3421 caagtaaaac caccgccaaa agcatctagt aagatcagat ttcctttttt aagtcgtcct
     3481 tcttcatagg catcattcat tgccataggt atagaagcag ctgaagtatt gccatatttt
     3541 tgtacggtaa tcacacattt ttcatcgctt agattgagtt tttcttggac ggctttaatg
     3601 atgcgtagat tagcttgatg aggaataaaa agatcaattt cttgtgctaa aatgttattt
     3661 ttagctaaaa tttctacaac atcattgcta agcgtgttta ctgctatttt aaaaacttca
     3721 ttgcctttca tttgcataga aagtgtttga catagacttg atttttgcga tctttgagtc
     3781 attaaaagat ctccataatt accattgctt gcagtatgta catcaaggat atgattttca
     3841 ttgtccaaac ttacaactcc agcacccgca ccgtctccaa agagtatgca aatgcttctg
     3901 tcattgtaat ccataattga acttgttttt tcagctccta cgattaaaac attttttttc
     3961 aaaccacttt ctactaaggc tttagcttgt tcaagcaaat agataaaacc agaacaagct
     4021 gctgaaatat caaaagcact aatatttaca agtcctaaat ttgaagcaat tttacaagcc
     4081 gttgaaggca tagtaaaata atcaggactt aaagtggcta caagaatcgc atcaatatct
     4141 tcaggtttta aatttgctct ttctatggct tttaatgcag cttttgtgcc caaatcgcta
     4201 gaattttcat tttcactagc aatgcgtctt tctttaatac ctgtgcgtct agtgatccat
     4261 tcatcggtgg tatctactat tttttcaaga tcagcattgc ttaaaatttt ttctggaata
     4321 taagaagcta tacttttaag accggcttta agcattgtat ttcccaagtt cattttctat
     4381 aagttcattg atatgagatt ggctaaaatt tatagcttga aaaattgcat ttttaatagc
     4441 tctagaatca ctttttccat gacttatgat cacgcagcca ttaactccaa gaaggggtgc
     4501 tccgccatat tcttgccaat ctgtgtgttt ttttaatttt ttaaaagatg acttcataag
     4561 taaagcacct attttagaaa taaaagattg ctttacttcg ttttttagaa gctgaaaaat
     4621 agctgttgct acaccttcac aagcctttaa gataacgttt ccatcaaaac catcgcagac
     4681 taaaacatct atttcaccat tgaaaatatc tctaccttca gcattaccta taaaatttgg
     4741 aatttttttc ataagctgat gactttcttt ggtaagttca ttgcctttgc attcttcttc
     4801 accattagaa agtaaagcaa ggcgtggttt ttgaatttgc ataatttctc tagcataaac
     4861 ttcacccatt atggcaaatt gaaataaatt ttcagcttta caatctgtat tagctccaac
     4921 atccaaaagt aaagttctgt taacgatatt tggcattaaa gtggcaatag caggtcttga
     4981 aataccttta agtcttccaa gccttaaggt agccaaagac atacttgctc cactatgacc
     5041 cgctgaaact acagcatcta cttttttttc ttttaataaa ttaatagctt tgtatatggt
     5101 tgtttcttta ttttttaaag catctgtggc atttccattc atcgaaaaaa tttcactagc
     5161 ttcttcgtat tgtatatatt gttctaattt ttttggtatt aaaggtttta gaattttaga
     5221 atttcccact aagatagcgt taaaaggttt tgcttctagt gcctttaaaa cgccttctat
     5281 aatgggtttt tctccaaaat caccacccat tgcatcaatg gcaatgttaa tcattgattt
     5341 taatattcct tagttgttgg attcgcacgg tgaggcattt tgtagcttcc atctttgtct
     5401 tttataggca taggaagact aactttatag tgagttctgc gtttagctgc acgagttttg
     5461 ctcactcttc tctttggtac tgccattttt tctcctttat aaaatttaat taattattgc
     5521 aatttatgca ataaaaataa tcactcaaat aagcttcaag ctcgctaata gcaacttcta
     5581 ttaaatcaat atgtccatca aaaaattcta tagtattgct caattcgttt gcttcatctt
     5641 taaaaatacc atcacttgca aaaagttcta aattttcttt aatttcaagt tctaactcag
     5701 ttccacaact atcacaaggt ctatagataa aaccttgcat aatagcattt attttaacaa
     5761 gcttaggatt tatttttact aaatttccct caaaaatcat attttcaaga ttaagtttaa
     5821 aaggatattc ctttgtatta atcttagaaa aagggatttt catttagcaa atttcatttg
     5881 gtttaaagaa aaaatcaatt tctatttttg cattttccaa gctgtcactt ccatgaacag
     5941 cattagcatc aatactctca gcaaaatcgg ctctaattgt tcctgcttta gcttctttag
     6001 gatttgtcgc tcccattaaa tctctatttt ttaatacagc accttctcct tctagtacag
     6061 aaacaacaac aggaccgcta atcataaatt caaccaagtc tttaaaaaaa ggtctttctt
     6121 tatgaacagc ataaaaattt tcagcttgtt ctttactaag ttgaactttt ttcattgcag
     6181 cgattcttaa tccattgctt tcaaaacgat ctaaaatttt tcctataaca ccttttttaa
     6241 cagcatcagg tttaattata gataaagttt tttccatctt tgtaataact ccttatttta
     6301 ataaagctta aaattatact tgaatttgtt taaagaaagt taaattaaaa gaaaaagcta
     6361 ggaatctcta gctttttaat tttttaaaat tatgcaaaaa ctggagtgtc cccacttctc
     6421 atatcagcgc caatattatc acgacttggt tgtcctgatt ctacagcact ccaaactata
     6481 catccatctg ttgggcaagc actggcacaa gctggttgat cattatgtcc tacgcattca
     6541 acgcatttgt ttgcataaac ataatatcta tcttcacctt ctggattgtt agcatcatca
     6601 acgatagcac tcactggaca ctcatcaata caagaaccac aagcaataca tatatctgta
     6661 atttttacag ccattttttc tcctttttaa tattaagatt taaaagattt tagcataaaa
     6721 ttcttaaata atgtaaattt tgataatcaa aaatttacat tatttgataa taattataac
     6781 tttcttaaat ttttaatatt attttagata tttaaaaaaa aataaagatt taaacgatat
     6841 aatttcgtta tcaataaaat ttattattta ggagaaaata tgatagttac taaaaaagct
     6901 ttagatttta ctgctccagc agtattggga aacaatgaaa ttgttcaaga ttttaatctt
     6961 tataaaaaca taggtccaaa aggagcggta gtattctttt atccaaaaga ttttactttt
     7021 gtttgtcctt cagaaattat agcttttgac aaaagatatc aagaatttaa aaatcgtggc
     7081 attgaagtaa ttggaatttc aggagataat gaattttcac attttgcttg gaaaaatact
     7141 ccagtaaatc aaggtggtat tggtcaggtt aaatttccgc ttgttgctga cttaactaag
     7201 cagattgcta gaaattttga tgtactttat gcagaagcag ttgcccttcg tggttcgttc
     7261 ttgcttgatg ctgatggaac agttcgccat gctgtggtta atgatttacc actaggtaga
     7321 aatatagatg aaatgttaag aatggttgat actatgcttt ttacaaatga gcatggtgaa
     7381 gtttgtcctg caggatggaa taagggcgat gaaggtatga aagctaaccc taaaggcgtg
     7441 gctgaatatc ttggcaaaaa cgaagctaaa ctttaatttc ttagtataaa gcctctttac
     7501 gaggcttttt cttcattttt attctttaat tgaaattcat aaattttcta ctataatttt
     7561 acacacatat taaaattttt atttaggcta aaatatggca ggcgaagatc aagaaaaaac
     7621 agaagaaccc acgtccaaaa agatagaaga tgcgcgtaaa gaaggtaatg ttccaaagtc
     7681 tcaagatgcg gcagctattg taactttgat aattggagta actataactt tatttatgat
     7741 gagttttatg ggcgagagaa ttgtaaattt atatagatac tatcaaagtt ttattggtgt
     7801 tgaatttgat ttgcgtatta ttcaagccat tatgattaaa agcatttttg aggttttaat
     7861 tattcttgca cctattgttt taagtattat gattgctggg gttttgggaa atattatgca
     7921 atttggtttt atttttacaa ccaaacctat tatgccaaat ttaggaaaaa tcaatccttt
     7981 gaaaggttta aaaaaccttt tttcattgaa aaaaattgtt gaaagtataa aaattatttt
     8041 aaaagtgggt attgttttta ctatagcttt tatagttttg cttaaattta tgcaagagct
     8101 tccaagagtt gagctttata ctatggttgc acagcttact tggctaagag atagggctat
     8161 tgttttagca gctattgtta tagttgcttt tttaattatt gctgttttag atgttttttt
     8221 ggtgcgtttt cagtatttta aaggtttgcg tatgagcaaa caagaaataa aagatgaata
     8281 taaacaaatg gaaggagatc ctcaggttaa aggtagaatt cgtagacttc aaatggaagc
     8341 tgcccgtcgc cgcatggttc aagatgttgc aggtgcggat gtagtgatta caaatccaac
     8401 tcattatgcc gtagctattc gttatgatac aagtaaagaa caagctccta gagttgttgc
     8461 caaaggagtg gattttctcg cacttcgtat aaaacaagta gcctatgaaa ataatgttgt
     8521 agtttatgaa aatcctcctt tagcaaggga gctttataaa gcttgtgatg ttaatgatct
     8581 cattcctagg gaaatgttta aagctgtagc tgaggtgcta ggatttgttt ataatacaaa
     8641 taataagagt cgtttagctg gtcaagtaaa aaaaggaaac taaaactttt aaggtgcttt
     8701 agttcctatt ttattgataa gttcaagaac tgatttttga gtgcttgtat ctgccgtatc
     8761 gactttaaaa tatatttcta ctctattatt ttctagggct tgcggatttc cattgatggg
     8821 attattaagc ccgtagcttt taatgctaat atttttcaaa tttgctccac cttctataaa
     8881 atattttaat acattttccg ctctttggta ggcgagttca taacttctta taatagagtc
     8941 gctattgtct gtatagcctc taatttctat ttttgcttga ggtggcaaat atgttgttag
     9001 ctcagccata cgttttaaat aatcttgtat atcagctgaa acgatttgag cactacctct
     9061 ttcaaattca actttagatg gaaggttaag agcaacctga ttatcgcttt gatctagagc
     9121 tgcttgaaga cgtttgatag tttcttgctg tgtcatagtc atttgtttta acgatttgag
     9181 ttcatcgctt tcttcttttg ctgcgccttt atatttttct tgggttttac tctcttcttt
     9241 gactgtttga gtagaggtgt aatcaaagat tttaacaaat tcagttttta aagcctctac
     9301 tttagcagga tttgttttag aaattgccca aagagcaata aaaagtgcca aaagcaaact
     9361 tagaaagtcc gcataaggta cagcccattt ttcgcctgct ggacattctg ggcatttatg
     9421 ttttttagcc atttttaacc tttgtcaaat tgtgaaattc ttggatcatc gtgacttaag
     9481 aagttaaaaa gtttagcttc taaatctcta ggattagcac cttctgcaat tccttttata
     9541 gcttcagtaa tgacaatttg ctcttttaca agatccattc cattagcttt taattttttc
     9601 ccccaaggag caaaaagtgc ataagcgcca aaaattcccg taactgtagc cgtgaaagca
     9661 cctgaaatac ctgctgccat tgcttgagga ttgtctagta atttaagagc taaaataagt
     9721 ccaaaaaccg ctccaacaag ccccatggta ggacaagtct ctccaaatac tatccaatat
     9781 tctgcacatt ctttataatg ctcttcaagt tgttcagttt gtatttccat gctttcatga
     9841 atttcttcaa agcttttacc atctacaagc atcatcatag cattttttaa aaattcattt
     9901 tcaatctcac tggttcttga ttctaacgct aaaagaccat ctcgtcttgc aataatagca
     9961 aattcgacta gctgggctat cctttcgggt aaatttactc cagaaccttt aaaaacaact
    10021 ttgagttctt tgtaggctgc ttttacaatt tttttatgcg tagaagtcat tgcgcaaaat
    10081 gcagctgttg gcataactat gagaaaggaa gaaagatgca caacatgcaa aggattgcct
    10141 ccctctagta tatctcctac cgaaatacta gtaactgcaa gcaccattcc taatatggtt
    10201 gaaagatcca ttaatttatc tccttgatta ttttaaatcg ccccaatttt tggcgatact
    10261 tgaacttgtt tttaatttta cttttaattt tactatattt tccataatat ctctagtttt
    10321 ttttacaaaa ttttcacaca aatcgtcttt tacttcaaaa attaattcat catgaatttg
    10381 taaaataagc tttttatctt catttaattc cttattgatt tctagcattg caagcttgat
    10441 tacatctgct gctgagcctt gcaagcttga attaatgctt tctctttcat acatggcaat
    10501 ttgcataggt tttgcgtttt caaaatcaaa ataacgcttg cgaccgctta aagtagtgat
    10561 aaagccattt tgtttagctt catttttaac tgtttcaaaa tattttttaa tactagtaaa
    10621 attttcaaaa tatttttcta tgtaagattt ggctaaatta gcttctattt ttaaattttg
    10681 acttaaggtt ttataaccca taccataaat aagtccaaaa tttatacttt ttgcaacact
    10741 tctggtttca taattgcttt caccaaaaat cattattgct gttcttgcgt gtatatcttc
    10801 atcattggca aaagcattta aaagtttttc atcttcgcta aaatgtgcaa gtattctaag
    10861 ttcgatttga gaataatcaa gagagataaa actaaatcca tctttagcta caaagcaaga
    10921 tttataatct tttgcatatt gtccgtgtgc agggatgttt tgcaaatttg gatccttaga
    10981 tgaaagacgt cctgtagcgg ttccagtttg taaaaaactt gaataaatgc gtgaattttt
    11041 atcttttaac gctagtttta acaaaggttc gcaataagtg gaataaagtt tggcaagttc
    11101 tctataatct aaaattttag caattacagg atgtttatct aaaagtatat ttaaaacttt
    11161 ttcatcggta gaatatcctg tttttccttt ttttccgctt gggagtttga gtttttcaaa
    11221 aagtatatca cccatttgtt taggtgaatt tagattaaat ctatcctcgc aaagagtata
    11281 aatttcttca cttaaatttt tgatttcatt ttcaaatttt ttcataagga tttcaagtgc
    11341 atttgtatca agctttatgc cattttcttc catcatcata atgattttaa tgaaatcaaa
    11401 ttcgcagttt ttagcaagtt ctaataaagg agtttcaaga ttttttaaaa aataaagata
    11461 aaatcttaaa gtgatataag catcttctgc agcgtattta caagcttttt caagttctac
    11521 acttgcaaaa ttttctcctt ttttaacaag gctttcaaaa tgcaaggttt cgtaattaaa
    11581 aagtcttaag gctaaatcat ccatatttac tcttaaagaa ggatttttaa gccatgccaa
    11641 aatcattgta tctgcgtatt tttgaggtaa atttaagtca aaattgtttt gaatgatttt
    11701 aaaatcatat ttgagattgt gccctataac aaaatgatta aagattactt ctatagcttt
    11761 tttggcactt tgcaatgaga tttgctcacc tactccaaga taattatgag ttaaaggcac
    11821 gtaaaaggct tcattttcat tcatgcaaaa actaaaacca acaatttttg cttctttagt
    11881 atcaagtcct gtggtttcgg tatcaaaagc aataatactt tctttatcaa gggtatttaa
    11941 aatttcaaaa agtttgtttt catcttgtac taaagtggct ttaaaaccta aatttttatc
    12001 tttattatca ggattttgac gcagtttttt aagcaaagta ttaagttcgt aatgttctaa
    12061 aatttcaagt atttttaaaa gaggttcttc atcaggataa gtggcttttt ctatgagatt
    12121 ttgtacttct aaattgtcat acaaagaagc taattttttg cttaaaaatg cattttcctt
    12181 accctctaaa agcaagttac gacttctttc gttacgtact agggttaaat tttcataaat
    12241 tccctctatg ctaccaaact catcaagcaa ggttttagct ccttttgcac ctataccttt
    12301 aacgcctgga atattatcag aactatcccc acaaagagct aaaaaatctc tgatttgatt
    12361 aggttttact ccgtattttt ctaaacacgc tgcttcatca cagtcgtttt tagaaatagg
    12421 actgtaaatg cttgttttgc catcttttat gagttgataa agatctttat cttgagtgat
    12481 aatgcgtaca aaaatatccc tatcttcaca agtttttaca aaagaagcga tgatatcatc
    12541 ggcttcataa ccttcttgag aaacgcttat aaaacccatt ttttctatca tctttatgca
    12601 aattggaatt tgttctagaa gttcaggcgg tggtggagtg cgattttgtt tatagtttgg
    12661 atcaatttca ctacgaaaag tttttccttt ggaatctaat gcaaaaacaa tataatcact
    12721 tttatattca ttttttaagt tataaataaa atttgcaaaa ccgctaatca ttccactagc
    12781 ttgtccttgt gaatttttaa aaccttttaa tgcgtagtaa agtctgaaaa aaaatccaaa
    12841 agtatcaata atagttaaag ttttcataat aatttcttct tttgataaaa tatatttttt
    12901 ggttatatta tttcaaaatt ttgcttaaaa tgtctcgaaa tttaaagata tttaagcgaa
    12961 aatacttcaa tttttagtca taatatcgag tagagtaaaa attttatatg aataatgtaa
    13021 ggaaaatgta atgacaaatc agcaaattga tggaattgca gataagaatt ttaacacacc
    13081 tgaaggtaga aaagttttta aaaaggcagt tttttcttgc tggttgggaa ctgctatgga
    13141 atatgcagat tttgcacttt atggtttagc agctgcaaca attttttcct gagcaaactc
    13201 cagtaattgc acttttgctt agttttgtaa cttatggcat aggttttatt gcaagaccta
    13261 ttggggcttt gttttttggt catttaggtg ataaacacgg aagaaaaaat gttatgatgg
    13321 ctacaatagc tttaatggga atttcaacta ctctgatagg ttttatccca agttatgcag
    13381 tgattggtgt ttgggcgcct atttgtttgg ttgcattgcg ttttatgcag ggttttggcg
    13441 caggagctga actttcaggt ggaacagtta tgctaggaga atatgctcct agcaagagaa
    13501 gagggcttgt ttcttctgtg attgctttag gatcaaatag tggaactttg cttgcgtctt
    13561 ttgtatggct tttgatggta caaatggatg aagcaagttt taaagaatgg ggctggagag
    13621 ttccttttat gggaagtatt ttaatcgctc tttttgctgt atatattcgt tttcatgtca
    13681 aagaaacccc tgtttttgaa aagcaaaaaa atgaaatgat gaaattgcgt cttaataacg
    13741 aaaagcatat gaaaaaagat gaaagaagtt tttggcaaag aagtcgtgct ttttggacta
    13801 tggtgggctt aagaataggc gaaaatggac cttcttatct tgcgcaaggt tttattgtag
    13861 gttatgtgac taaaatttta cttttagaca aatcagtagc tactacagcg gtaatgatag
    13921 cttcattggt agggttttta gttattcctt tggcgggtta tttaagtgat aaatttggaa
    13981 gatgtattac ttatagaatg ttttgtttgc ttttaatgat ttatgctttt cctgctttta
    14041 tgcttttaga tagtaaaaat gaaattattg tgattttaac tattattgta ggtatgtctt
    14101 tagcatcttt agggattttt ggtgtgcaag cggcttgggg tgtggagctt tttggggtaa
    14161 aaaaccgtta tacaaaaatg gcttttgcta aggagctagg ttctattctt tcaggaggaa
    14221 cagcgcctat ggtggcttct gctttgcttg catattatgg cgcttggtgg cctatcgcga
    14281 catattttgt attaactgca ggtataggtt ttgcgactac attttttgcg ccagaaacta
    14341 gaggtagaga tttaaataaa atagaagatg cgatatgaga cttatcttag acacggacat
    14401 aggcaatgct attgcaggag caaatactga tgatggttta gcacttgctt tgattttgtc
    14461 atctaaagaa atcaaacttg aaatgctaag cacagtttgc ggtaatgttc caagccttgt
    14521 tgcctatagt gtggctaagg atttatttaa acgtttaaat ttaaatatcc ccgtttattt
    14581 gggagcgaat gaagccctaa aagaaccaag taaagcttgg cgtcaaagac ttgatgaaag
    14641 tgttaaaaat tttaaacttg aatatctttg ggaaaatata aaaagtcctg aaattttaga
    14701 aaatataaat cctgatgcga tttttaaaat gggtgagttg gtgagtaaaa atcctaaaga
    14761 aatttctatt tgtgcgatag gacctttgac aaatatcgct atgactatga aaatttttaa
    14821 agattttgat ataaatctta aagagctttt tattatgggc ggcagttttg atatgcctta
    14881 ttacactaaa gatacaaatt ttggttttga tcctgaggcg gctagtatag tgctaaattc
    14941 aagagctaaa attacactca taccttataa tgcaaccatg cagactttat taacacacga
    15001 ggatttaaaa gagttgcaag gtaagaatat tttatgtgat tttatcgttg aaactttagg
    15061 tgtttggatt gattatgcct ctaaaacacg tggtataaag ggaacttgga tacatgatgc
    15121 tttaacgata gcttacgcat tagattctag tattgcagat tttgatgagt gttatgctga
    15181 tgttatttgc gatagttctt tggcaagagg tatgagttgg cgttgtttta aagaaccaaa
    15241 aatgagtatg ggggtggatt taagcactaa aaattgtgtt aaaattctaa aaaatgtaga
    15301 caatgcaaag cttttaaaac ttataaaaga gaggttttta aaaggagttt gctatgaaaa
    15361 ttatgaaagc ataacgactt aattttccaa gtaagataaa aaatatagtt tttaaaaaag
    15421 aatatttcgc aaaaccaagt cccaaggcaa aaagatctcc tactaaaggt aaaaaagtaa
    15481 aaaaagcaaa tatacttcca aatttagcaa aattagcatt gaaattttct aattttttta
    15541 aggatttgct aaagtatttt tctaaaattt tttcttttcc aaaatacgct aaagcataag
    15601 tacttaaact tcctaaggta ttacccaaag tggctacgat aagtaccaaa ttcggagtaa
    15661 aatcaagttt tataaagcct aaaacaaagg cttcacttgc taagggtaat agtgtgcttg
    15721 aaagaaaaca caccatgaaa agccccaaat agctaatatc attatataaa aaatcaaaca
    15781 taaaattatg atttttgtgt atttttaagc tctaagtcta gataatatcc tgtgtaagaa
    15841 cgggtttttt tgtgttcttt agcgactttt tccacgcttc ctgtgcttat aacttttcca
    15901 cctttaactc cgccttcagg ccccatatcg atgatataat cagcattttt aatcacatct
    15961 aaattatgtt ctatcacaaa aacagaattt ttaagatcaa ctaaatgttg taaaactaag
    16021 atgagtttat tgacatcttc aaaatgcagt cctgttgtag gttcatcaag tatataaagc
    16081 gtttttcctg tatcgctacg gcttagttct ttagcaagtt tgattctttg tgcttcacct
    16141 ccacttaagg tggtggcatt ttgtcctaga gttagataat ctaaacccac ttttactaga
    16201 gtatctaatt tttgtttgat tttaggaacg gctgtaaaaa attcactcgc ttctaaaaca
    16261 ctcatattta aaatttcact gatatttttg cctttatatt tgatttctag cgtggcatca
    16321 ttgtagcgtt tgccctcgca agtatcacaa actaccataa catcaggtaa aaaatgcatt
    16381 tctattttga tttctccatc tccgctacat ttctcacatc ttccaccctt gacattaaaa
    16441 gaaaagcgtc cagctttata accacgcatt ttggcttctt tagtggcggc aaaaagattt
    16501 ctgatttcat ccatagcacc tgtataggtg gcaggatttg aacgtggtgt gcgcccaatt
    16561 gggctttgat taagataaat gactttatca agtttttcaa gtccttctat ttgtactccg
    16621 ccaagttttt taactttttt cgcacggttt aattcctctt gtgcaaaagg aagtagggtt
    16681 tgaagtatca aagagctttt tccagaacct gaaactcctg ttatagcgac taaattttgc
    16741 aaaggaaatt ttacgcttaa atcttggata ttgttaatat ttacattttt aagctcaagc
    16801 cattctttct gtgttctgtt ttgaagttgt gaaatttgtt ttttaccatt catataaagt
    16861 gcagtttcgc ttttgctttt taaaagttct ttataagttc cactaaatac aacctcaccc
    16921 ccaaattttc ctgcttttgg accaatatct acaataaaat ctgcttcttc tatggtcatt
    16981 ttatcatgct ctacgacaat tagggtattg cccttttgtt gtaaatttct taaagtttta
    17041 atcagttttg cagtatctct ttcatgaagt cctatgctag gctcatctaa aacatacatc
    17101 actccgctta aaccactgcc aatttgtgaa gctatgcgga ttctttgtgc ttcaccccca
    17161 ctaatcgttc ttgcatcgcg ccctaaagaa agataaccta gccccacatc atacaagaaa
    17221 aacaatcttt cgttgatttc ttttaggata ggtttagaaa taagtttttg ttgctcgctt
    17281 aaataagaaa aatttttctc atctgcaaaa aaagccgtac tatcttctat gctcatatct
    17341 aaaatttcac ccaagctttt tttggctact ttcacggcta aactttcggg ttttaaacga
    17401 tgcccaccgc agtctttaca aattttttca ctcatatatt cagctaaatc tttttcatct
    17461 tttagcattt cataagccat tttaaccacg ccttcaaaag tgcgttttag gcgatttctt
    17521 ttccaaagaa attctatagt tttggcatta ccatacaata caagacgttt ttgttcttcg
    17581 tttaattgca taaaaggtat tttgatagga atttcatttt gctcgcaaaa ggcgattagg
    17641 aatttataat aataactttt attaaaacca tacatgattt taacagcacc gttttcgaga
    17701 cttaaatttt catcgatgat ttttttcata tctaaagtat aacgaattcc aagtccatcg
    17761 caagcttcac atgctccttt tggagaatta aaagaaaagc ttaaaggctc gagtggaaca
    17821 aaggaaattt tacaatcaaa acaagctgaa tgctcgctaa aatgatagtg tttattaagg
    17881 tttatttcct catgatttaa aacttctatt tctatttctc caaagctttc ttgtaagcct
    17941 ttttctatat cgcttgcaag acgagaaagt aaatcttctt gaatttcaag cctatctatg
    18001 acaagtttaa tggtgtgttt tttggttttg gctagttcaa tttcttcatc aagtcttacc
    18061 aaaactccat caatttgagc tcttacatag cctttgttgc gtaaattttc aagcaaatct
    18121 gcataagttc cttttttttc tcgtatgagt ggggcgtaga tgatgatttt tgcacctttt
    18181 ggaaatttta aaatttcact gactatatca cttacactca tagatgaaat tttttgtccg
    18241 cattgatgac aatgttgaat gccaactctt gcgtataaaa gtcttagata atcataaatt
    18301 tcagtgatgg ttcctacagt agagcgtgga tttttagaag tagttttttg atctatggca
    18361 atggctggag ttaaaccttc gattttatcg acatcaggtt tgcctacctt atctaaaaat
    18421 tgtctggcgt aagcacttaa actttctata taacggcgtt gtccttcagt ataaagagtt
    18481 ccaaaagcaa gggttgattt tccacttccg ctcagtcctg taaaaacaat gagtttgttt
    18541 ttgggaattt caaggtggat attttttagg ttattttctc ttgcgccaat gatttttatg
    18601 gtatcgttca tagtctttcc taaacattaa ataaatttaa gattttagca taataatatt
    18661 aaaagaactt ggataaatcc aagttaaaaa tttataaaat ttagcttatt aagcaaagag
    18721 tgggtggttc caagtattga taaggcatat acgcaaagta aaatttttct atgagctgaa
    18781 atatgcattt tttctatgat tttaattcct ataaaaactc caaccataga agctatacct
    18841 actagtattc ctttatgaat aacttcagag tctataactc cagaatttga aaaagatata
    18901 ataccagaga ctgaagcaaa aataacaaaa aacaaggata aggaaacaac ttttttacta
    18961 tcatagccta aaaaataagc taaaatcgga gcaattaaaa gtccgccacc aattcccaaa
    19021 gaaatagcaa aaataccagt aaaagctcca gcaataaata aaatgacatt ctttacccaa
    19081 acgcttcttt gattttgcac aatgttttct ttaattccaa aagcatattt gataaaaaat
    19141 atacaactta ccgccaaaaa tacgctagta agagctacat cacttaaagc ttttaaaagc
    19201 aatccgctaa agcttgcccc tatgagccct ccaaaaccta tcataatacc atctttaaga
    19261 tttagatttt ttttcttata attaatataa gagccaaaaa ctgctgcaaa aatcatttgc
    19321 aatactgaaa ttccgatagc atggtgagca cttgctccaa gtgcgaacat agaaggaacg
    19381 ataatcatac ctccaccaat gccaaaaagt ccagaagcaa tacctgaaat gattcctatg
    19441 attagataag gtaaatctgt gatttccata gcttttccta aaaaatatta aatatttcaa
    19501 atacggaata attttatctt attaagctaa gtattatctt agttttttat aacaatagaa
    19561 tatttttttg gtaactttaa gcatcgtaaa aatgttt
//
LOCUS       DARGBD010000020        19534 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.020, whole genome shotgun sequence.
ACCESSION   DARGBD010000020 DARGBD010000000
VERSION     DARGBD010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19534
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.020"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..945
                     /gene="galE"
                     /locus_tag="SFZ04_000632"
     CDS             <1..945
                     /gene="galE"
                     /locus_tag="SFZ04_000632"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEG8064934.1"
                     /translation="HTLRQFLKTDHEICVLDNLSKGSKIAIEDLQKIRAFKFFEQDLS
                     DFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNTTNLIETCLQTGVNK
                     FIFSSTAATYGEPQTPVVSETSPLVPINPYGRSKLMSEEVLRDASMANPEFKHCILRY
                     FNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDYDTKDGACIRDFIHV
                     DDISSAHLAALDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSGVDFKVELAPRRAGD
                     PSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            939..2633
                     /gene="pglK"
                     /locus_tag="SFZ04_000633"
     CDS             939..2633
                     /gene="pglK"
                     /locus_tag="SFZ04_000633"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HEG8064935.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHVIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKIYNLGFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLSQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            2630..3709
                     /gene="pglH"
                     /locus_tag="SFZ04_000634"
     CDS             2630..3709
                     /gene="pglH"
                     /locus_tag="SFZ04_000634"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HEG8064936.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLVNVLCKEHEVSIIKFHAGESF
                     YKLENKVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     AAKIGFKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     RLLLNPCHFSDEIPFDSSFEKENLVLFIGRLDHNKNPAMFLKAIAHLDKNLQENYKFV
                     IAGDGELRQELEYKVKSLGIKVDFLGRVENVKTLYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLIGCDDEIALAKKLELVLNNENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            3702..4631
                     /gene="pglI"
                     /locus_tag="SFZ04_000635"
     CDS             3702..4631
                     /gene="pglI"
                     /locus_tag="SFZ04_000635"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HEG8064937.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMVKFSGEFFSVF
                     KKSLLENQRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAHR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            4619..5716
                     /gene="pglJ"
                     /locus_tag="SFZ04_000636"
     CDS             4619..5716
                     /gene="pglJ"
                     /locus_tag="SFZ04_000636"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8064938.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALI
                     ARMFGNKTRLVINECTTPSVMYVKNNFNSLANKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSINPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTGLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            5720..7861
                     /gene="pglB"
                     /locus_tag="SFZ04_000637"
     CDS             5720..7861
                     /gene="pglB"
                     /locus_tag="SFZ04_000637"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HEG8064939.1"
                     /translation="MLKKEYLKNPYLVLFAMIILAYVFSVLCRFYWIWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            7871..9001
                     /gene="pglA"
                     /locus_tag="SFZ04_000638"
     CDS             7871..9001
                     /gene="pglA"
                     /locus_tag="SFZ04_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG8064940.1"
                     /translation="MRIGFLSHAGASIYHFRTPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYELSRASLNPFVVLKNFFYLAKVLKNLNLDLIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFFINNLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKESKICVIKSVGINLKKFFPIYVESKKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENIIAQRYLKLYDRVIKNV"
     gene            8994..9596
                     /gene="pglC"
                     /locus_tag="SFZ04_000639"
     CDS             8994..9596
                     /gene="pglC"
                     /locus_tag="SFZ04_000639"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HEG8064941.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            9583..10173
                     /gene="pglD"
                     /locus_tag="SFZ04_000640"
     CDS             9583..10173
                     /gene="pglD"
                     /locus_tag="SFZ04_000640"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HEG8064942.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSASIEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGTNSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRKI"
     gene            10271..11431
                     /gene="pglE"
                     /locus_tag="SFZ04_000641"
     CDS             10271..11431
                     /gene="pglE"
                     /locus_tag="SFZ04_000641"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HEG8064943.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATVALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            11433..13211
                     /gene="pglF"
                     /locus_tag="SFZ04_000642"
     CDS             11433..13211
                     /gene="pglF"
                     /locus_tag="SFZ04_000642"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HEG8064944.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPFRMKEEEEETPCIVVGATSKALHL
                     LKGAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYVEQGVKTAIIALRLEQ
                     EELKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVV
                     LVSGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILD
                     KQSLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKF
                     VMISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQ
                     IANNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGRPVKIIDLAKKM
                     LLLSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIE
                     NLQICEDISEALLKIVPEFKHNKEGV"
     gene            13211..14104
                     /locus_tag="SFZ04_000643"
     CDS             13211..14104
                     /locus_tag="SFZ04_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG8064945.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     SVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            14217..14609
                     /locus_tag="SFZ04_000644"
     CDS             14217..14609
                     /locus_tag="SFZ04_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HEG8064946.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            14632..15477
                     /locus_tag="SFZ04_000645"
     CDS             14632..15477
                     /locus_tag="SFZ04_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEG8064947.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            15481..17418
                     /gene="ftsH"
                     /locus_tag="SFZ04_000646"
     CDS             15481..17418
                     /gene="ftsH"
                     /locus_tag="SFZ04_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEG8064948.1"
                     /translation="MNNNTQNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            17415..18032
                     /locus_tag="SFZ04_000647"
     CDS             17415..18032
                     /locus_tag="SFZ04_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG8064949.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            18042..18770
                     /gene="pssA"
                     /locus_tag="SFZ04_000648"
     CDS             18042..18770
                     /gene="pssA"
                     /locus_tag="SFZ04_000648"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEG8064950.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(18761..>19534)
                     /locus_tag="SFZ04_000649"
     CDS             complement(18761..>19534)
                     /locus_tag="SFZ04_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEG8064951.1"
                     /translation="LQDILYEKNITIKFHSFQNFYEDFKSHKLIFNHEHQSIFKKNTS
                     QQITLLHPTRIRRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYD
                     WLEVADEEIKHFKLLNSALKELSYKYGNFPVHDNLESALEATKDSLSFRMGVVHRGLE
                     AKGLDANPFVVQKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNRYDFI
                     ELCKTFKQFSLAGKKLNIQARIKAGFTQEECEVIEKFYS"
BASE COUNT         6629 a         2225 c         3727 g         6953 t
ORIGIN      
        1 catactttaa gacaattttt aaaaacagat catgaaattt gtgttttaga taatctttct
       61 aagggttcta aaatcgcaat agaagatttg caaaaaataa gagcttttaa atttttcgaa
      121 caagatttaa gtgattttca aggcgtaaaa gcattgtttg agagagaaaa atttgacgct
      181 attgtgcatt ttgcagcaag cattgaagtt tttgaaagta tgcaaaatcc tttaaaatat
      241 tatatgaaca acactgttaa tacgacaaat ctcatcgaaa cttgtttgca aactggagta
      301 aataaattta tattttcttc aacggcagcc acttatggcg aaccacaaac tcctgttgtg
      361 agcgaaacaa gccctttggt acctattaat ccttatgggc gtagtaagct tatgagtgaa
      421 gaggttttgc gtgatgcaag tatggcaaat cctgaattta agcattgtat tttaagatat
      481 tttaatgttg caggtgcttg tatggattat actttaggac aacgctatcc aaaagcaaca
      541 ttactcataa aagttgcagc tgaatgtgcc gcaggaaaac gtgataaact tttcatattt
      601 ggcgatgatt atgatacaaa agatggtgct tgcataagag attttatcca tgtagatgat
      661 atttcaagtg cgcatttagc ggctttggat tatttacaag agaatgaaag taatgttttt
      721 aatgtaggtt atgggcatgg ttttagtgtc aaagaagtga ttgaagcgat gaaaaaagtt
      781 agtggagtgg attttaaagt agaacttgcc ccacgccgtg caggtgatcc tagtgtgttg
      841 atttctgatg caagtaaaat cagaaatctt acttcttggc agcctaaata tgatgattta
      901 gagcttattt gcaaatctgc ttttgattgg gaaaaacagt gttaaaaaaa ctttttttta
      961 ttttaagtaa ggaagataaa aattttttat tttttttgct tgttttttca gtatttgttt
     1021 cttttataga aacttttgcg atttctttgg taatgccttt tatcactttg gccagtgatt
     1081 tttcttattt tgatcgtaat aaatatttaa tcagcttaaa agaatatctt aatatccctg
     1141 tttttgaaat cattgtttat tttggggtgg ggcttattgt tttttatgtg tttagagctt
     1201 tgttaaatgc gtattatttt catcttttag caagattttc taaagggcgt tatcatgtga
     1261 tcgcttataa ggttttttct aaatttttaa atattaatta tgaaaaattt actcaaaaaa
     1321 atcaatctga aattttaaag tccattacag gggaagttta taatctaagc actatgattt
     1381 catcattttt gcttttgatg agtgaaattt ttgtagtgct tttgctttat gctttaatgc
     1441 ttttgattaa ttataaaatc actttatttt taagtatttt tatggtgtta aatgccttta
     1501 ttttagtgaa aattttaagc cctatcatta aaaaagcagg agtaagacgc gaagaagcga
     1561 tgaaaaattt ctttgaaatt ttaaatacaa atttaaataa tttcaaattt attaagctta
     1621 aaaccaaaga agatggagta ttaagtcttt ttaaagcgca aagtgaagct ttttctaaag
     1681 caaatattac caacgaaagt gtagctgcgg tgcctagaat ttatcttgaa ggaataggtt
     1741 tttgtgtact tgtttttatc gtggtatttt tggtgttgaa aaatgaaagt gatatttcag
     1801 gtattttatc cacgatttct atttttgttt tagcacttta tcgcttaatg ccaagtgcaa
     1861 atcgtattat tacaagttat catgatttgc tttattatca ttcttctttg gatattattt
     1921 atcaaaattt aagacaagaa gaagaaaatt tgggcgagga aaaattaagc tttaatcaag
     1981 agcttaaaat ttacaacctt ggctttggtt atgagggaaa aaaatattta tttaaaaatc
     2041 ttaacttaaa cattaaaaaa ggcgaaaaaa tcgcttttat aggggagagt ggttgcggaa
     2101 aaagtacctt agtagatctt atcataggac ttttaaaacc aaaagaaggg caaattttaa
     2161 ttgatgagca agaattaaat gcaaataata caaaaaatta tcgccaaaaa ataggctata
     2221 tcccgcaaaa tatctatctt tttaatgaca gtatagctaa aaatatcact tttggagatg
     2281 cggttgatga agaaaaactt aatagggtta tcaaacaagc aaatttagag cattttataa
     2341 aaaatttatc tcaaggagtg caaacaaaag tgggtgatgg ggggagtaat ttaagcgggg
     2401 gacaaaaaca acgcatagct atagcaagag ctttgtattt agagcctgaa attttagtgc
     2461 ttgatgaagc aacttctgct cttgatactc aaagtgaagc aaaaatcatg gatgaaattt
     2521 ataaaatttc taaagataaa accatgatta ttatcgcaca tcgcctttct acgataacgc
     2581 aatgtgataa ggtttatcgt ttagaacacg gtaagcttaa agaggagaaa tgatgaaaat
     2641 aagctttatt atcgcaactt taaattcagg aggcgctgag cgtgttttag taaccttagt
     2701 taatgtactt tgtaaagagc atgaagtaag tattattaaa tttcatgcag gagaatcttt
     2761 ttataagctt gaaaataaag ttaaagttac aagtttagaa caatttagat ttgatacgct
     2821 ttatcataaa atcgcaagtc gttttaagaa attttttgct ttaagaaagg ctttgaaaga
     2881 aagtaaggct gatgttttta tttctttttt ggatacgact aatattgctt gtattgctgc
     2941 gaaaataggg tttaaaactc cactcattat aagtgagcat agcaatgaag cgtatttaaa
     3001 acctaaaatt tggcgttttt taagaagggt aagctatcct ttttgtgatg ctttaagtgt
     3061 gcttggaagc agtgataagg tgtattatga aagatttgta aaaagggtta ggcttttatt
     3121 aaacccttgt cattttagcg atgaaattcc ttttgattct agttttgaaa aggaaaattt
     3181 ggttcttttt atagggcgtt tagatcacaa caaaaaccct gcaatgtttt taaaagctat
     3241 agcgcatttg gataaaaatt tgcaagaaaa ttataaattt gttatagcag gagatggaga
     3301 gttaaggcaa gaacttgaat acaaggtaaa atctttagga ataaaagttg attttttagg
     3361 acgagttgaa aatgtcaaga ctctttatga aaaagcaaaa gtgctttgtc tttgttcttt
     3421 tgtagagggt ttgccaacgg ttttaattga aagtttgtat tttgaggttt gtagaatttc
     3481 aagttcttat tataatggtg ctaaggattt aatcaaagat aatcatgatg ggcttttgat
     3541 aggttgtgat gatgaaatag cacttgctaa aaaacttgaa cttgttttaa ataatgaaaa
     3601 ttttagaaaa gaacttgtaa ataatgccaa acaaaggtgt aaagactttg aaatttctca
     3661 tatcaaagaa gaatggctta agcttatagc tgaggttaaa aatgcctaaa ctttctgtta
     3721 tagtaccaac ttttaatcgt caagttttac tagaaaaggc tattaaaagc atacaaaatc
     3781 aagattttaa agatttagaa attattgtaa gcgatgataa ttctagcgat gatactaaaa
     3841 gtgtggtgca aaatttacaa aaagatgatg atcgcattaa gtatttttta aatcaaaatt
     3901 acaaacaagg cccaaatggc aataaaaata atggcttaga tcaagcaagt ggcgagtttg
     3961 taactttttt agatgatgat gatgagcttt tatctggggc tttaagtacc ttgatgcaaa
     4021 aagcaaatga gggttatgct catgtttttg gaaattgttt gatagaaaaa gaaggaaatt
     4081 taagcaagga atttagcggt aagggcttgg aaaaagatag tgaaatttct aaaaaagatt
     4141 ttttaatggt taaatttagc ggagagtttt tttctgtttt taaaaaatct ctacttgaaa
     4201 accagcgttt taatgaagaa ttttatggca atgaagccac gctttgggta aatttataca
     4261 aggaaaaaag tttttatatc cataaggctt ttaggattta taggattttt aggcaagata
     4321 gcgtgacttt aggggcgagt aaaaatgctc atagggtata tttgggatat ttagagcttg
     4381 ctaaaatttt agaaaatgaa cttagaatga gtaaggataa agattataaa aaaacttgtg
     4441 cgagttatta taaaatggca gcttattatg caaaacttgc aaaaaattat aaagctcttt
     4501 ataagtgttt gtttaaaagc ttgagtataa aaatcaacgc tcctgctttg atattactca
     4561 ttttaagtat aattccaaat aatatgattg aaaaattatc aaaaattcgg gtggctttat
     4621 gcaaaaatta ggcattttta tttattcttt aggaagtggt ggtgctgaaa gagttgtggc
     4681 gactttattg cctattttaa gtttgaaatt tgaagtgcat ttgatcttga tgaatgataa
     4741 aatttcttat gaaattccag agtgtcaaat tcatttttta gaatgttcaa aacctagtga
     4801 aaatcctatt ttgaaatttt taaaactacc ttttttggct ttaaaatata aaaaactttg
     4861 cagaaatttg ggcattgata cagaatttgt ttttttaaat cgacctaatt atatagcctt
     4921 aatagcaaga atgtttggaa acaaaactcg ccttgtgatc aatgaatgca ctacgccaag
     4981 tgtgatgtat gtaaaaaata attttaattc tttggcaaat aaatttttaa tttctttgct
     5041 ttacccaaaa gctgatttaa tcttgcctaa ttctaaagga aatttagaag atttagtgca
     5101 aaattttagt ataaatccaa aaaaatgtga aattttatac aatgccatcg atttagaaaa
     5161 catagggcaa aaagcccttg aagacatagc tttaaaagat aaatttattt taagtgtagg
     5221 caggcttgat aaaggtaaaa atcatgcttt attaattcgt gcttatgcga gattgaaaac
     5281 aggtttaaag cttgtgattt taggtgaagg tgtgcttaaa gatgagcttt tagctttgat
     5341 taaagaatta aatttggaag aaaaggtttt gcttttagga tttgataata atccttataa
     5401 atacatggct aaatgcgaat tttttgcttt tgcttctgtg tttgaaggtt tttcaaatgt
     5461 tttaatcgaa agtttggctt gttcttgtgc ggtggtttgc actgatcata aaagtggtgc
     5521 aagagagctt tttggcgatg atgaatttgg acttttagta gaagtagata atgaaaactc
     5581 tatgtttcag ggtttaaaaa ctatgcttga agacgataaa ttaagaaaag cgtataaaaa
     5641 caaagctaaa actagggcta aagcctttga taaagtaaaa attgcacgcg atgctttgaa
     5701 atatttatta ggataaaaga tgttgaaaaa agagtattta aaaaaccctt atttagtttt
     5761 gtttgcgatg attatattag cttatgtttt tagtgtattg tgtagatttt actggatttg
     5821 gtgggcaagt gagtttaatg agtatttttt caataatcaa ttaatgatca tttcaaacga
     5881 tggctatgcc tttgctgagg gcgcaagaga tatgatagca ggttttcatc agcctaatga
     5941 tttgagttat tatggatctt ctttatctac gcttacttat tggctttata aaatcacacc
     6001 tttttctttt gaaagtatca ttttatatat gagtactttt ttatcttctt tggtggtgat
     6061 tcctattatt ttactagcta atgaatacaa acgtccttta atgggctttg tagctgctct
     6121 tttagcaagt gtagcaaaca gttattataa tcgcactatg agtgggtatt atgatacgga
     6181 tatgctggta attgttttac ctatgtttat tttatttttt atggtaagaa tgattttaaa
     6241 aaaagacttt ttttcattga ttgccttgcc attatttata gggatttatc tttggtggta
     6301 tccttcaagt tatactttaa atgtagcttt aattggactt tttttaattt atacacttat
     6361 ttttcataga aaagaaaaga ttttttatat agctgtgatt ttgtcttctc ttactctttc
     6421 aaatatagca tggttttatc aaagtgccat tatagtaata ctttttgctt tatttgcttt
     6481 agagcaaaaa cgcttaaatt ttatgattat aggaatttta ggtagtgcaa ctttgatatt
     6541 tttgatttta agcggtgggg ttgatcccat actttatcag cttaaatttt atatttttag
     6601 aagtgatgaa agtgcgaatt taacacaggg ctttatgtat tttaatgtta atcaaaccat
     6661 acaagaagtt gaaaatgtag attttagcga atttatgcga agaattagtg gtagtgaaat
     6721 tgttttcttg ttttctttgt ttggttttgt atggcttttg agaaaacata aaagtatgat
     6781 tatggcttta cctatattgg tgcttgggtt tttagcctta aaaggggggc ttagatttac
     6841 catttattct gtacctgtaa tggctttagg atttggtttt ttattgagcg agtttaaggc
     6901 tatattggtt aaaaaatata gccaattaac ttcaaatgtt tgtattgttt ttgcaactat
     6961 tttgacttta gctccagtat ttatccatat ttacaactat aaagcgccaa cagttttttc
     7021 tcaaaatgaa gcatcattat taaatcaatt aaaaaatata gccaatagag aagattatgt
     7081 ggtaacttgg tgggattatg gttatcctgt gcgttattat agcgatgtga aaactttagt
     7141 agatggtgga aagcatttag gtaaggataa ttttttccct tcttttgctt taagcaaaga
     7201 tgaacaagct gcggctaata tggcaagact tagtgtagaa tatacagaaa aaagctttta
     7261 tgctccgcaa aatgatattt taaaatcaga cattttacaa gccatgatga aagattataa
     7321 tcaaagcaat gtggatttat ttctagcttc attatcaaaa cctgatttta aaatcgatac
     7381 accaaaaact cgtgatattt atctttatat gcccgctaga atgtctttga ttttttctac
     7441 ggtggctagt ttttctttta ttaatttaga tacaggagtt ttggataaac cttttacctt
     7501 tagcacagct tatccacttg atgttaaaaa tggagaaatt tatcttagca acggagtggt
     7561 tttaagcgat gattttagaa gttttaaaat aggtgataat gtggtttctg taaatagtat
     7621 cgtagagatt aattctatta aacaaggtga atacaaaatc actccaattg atgataaggc
     7681 tcagttttat attttttatt taaaggatag tgctattcct tacgcacaat ttattttaat
     7741 ggataaaacc atgtttaata gtgcttatgt gcaaatgttt tttttaggaa attatgataa
     7801 gaatttattt gacttggtga ttaattctag agatgctaag gtttttaaac ttaaaattta
     7861 agggttgaaa atgagaatag gatttttatc acatgcagga gcaagtattt atcattttag
     7921 aacgcctatt ataaaagcat taaaagatag aaaagacgaa gtttttgtta tagtgccaca
     7981 agatgaatac acacaaaaac ttagagatct tggcttaaaa gtaattgttt acgagctttc
     8041 aagagctagt ttaaatcctt ttgtggtttt aaagaatttt ttttatcttg ctaaggtttt
     8101 gaaaaattta aatcttgatc ttattcaaag tgcggcacac aaaagcaata cctttggaat
     8161 tttagcagca aaatgggcaa aaattcctta tcgttttgct ttggtagaag gcttgggatc
     8221 tttttatata gatcaaggtt ttaaggcaaa tttagtgcgt ttttttatta ataatcttta
     8281 taaattaagt tttaaatttg cacaccaatt tatttttgtc aatgaaagta atgctgagtt
     8341 tatgcggaat ttaggactta aggaaagtaa aatttgtgtg ataaaatctg tagggatcaa
     8401 tttaaaaaaa ttttttccta tttatgtaga atcgaaaaaa aaagagcttt tttggaaaaa
     8461 tttaaacata gataaaaaac ccattgtact tatgatagca agagctttat ggcataaagg
     8521 tgtaaaagaa ttttatgaaa gtgctactat gctaaaagac aaagcaaatt ttgttttagt
     8581 tggtggaaga gatgaaaatc cttcttgtgc gagtttggag tttttaaact ctggcgcagt
     8641 gcattatttg ggtgctagaa gtgatatcgt agaacttttg caaaattgtg atatttttgt
     8701 tttgccaagc tataaagaag gctttcctgt aagtgttttg gaggcaaaag cttgcggtaa
     8761 ggctatagtg gtgagtgatt gtgaaggttg tgtggaggct atttctaatg cttatgatgg
     8821 actttgggca aaaacaaaaa atgctaaaga tttaagcgaa aaaatttcac ttttattaga
     8881 agatgaaaaa ttaagattga atttagctaa aaatgccgcc caagatgctt tacaatacga
     8941 tgaaaatata atcgcacagc gttatttaaa actttatgat agggtaatta agaatgtatg
     9001 aaaaagtttt taaaagaatt tttgatttta ttttagcttt agtgcttttg gtgctttttt
     9061 ctccggtgat tttaatcact gctttacttt taaaaatcac tcaaggaagt gtgattttta
     9121 cccaaaatcg tcccgggtta gatgaaaaaa tttttaaaat ttataaattt aaaaccatga
     9181 gcgatgaaag agatgaaaag ggtgagttat taagcgatga attgcgtttg aaagcttttg
     9241 gaaaaatcgt tagaagctta agtttggatg agcttttgca actttttaat gttttaaaag
     9301 gggatatgag ttttgttgga cctagacctc ttttggttga gtatttgcct ctttacaata
     9361 aagagcaaaa attgcgtcat aaagtgcgtc caggtataac aggatgggcg caggtaaatg
     9421 gtagaaatgc tatttcttgg cagaaaaaat tcgaacttga tgtgtattat gtgaaaaata
     9481 tttctttttt gcttgattta aaaatcatgt ttttaacagc cttaaaggtt ttaaaacgaa
     9541 gtggggtaag caaagaagga catgttacaa cggagaaatt taatggcaag aactgaaaaa
     9601 atttatattt atggtgctag tggtcatggg cttgtttgtg aagatgtggc taaaaatatg
     9661 ggttataaag aatgtatttt tttagatgat tttaaaggaa tgaaatttga aagtacctta
     9721 cctaaatatg atttttttat agccatagga aacaatgaaa ttcgaaaaaa gatttatcaa
     9781 aaaatttcag aaaatggctt taaaattgtc aatcttatcc ataaaagcgc gcttataagt
     9841 cctagtgcaa gtatagaaga aaatgcagga attttaatca tgccttacgt ggtaattaat
     9901 gctaaagcca aaatagaaaa aggcgtgatt ttgaatactt caagtgtgat tgaacatgaa
     9961 tgtgtgatag gggaattttc tcatgtgagt gtaggggcta aatgcgcagg taatgtaaaa
    10021 attggtaaaa attgtttttt agggactaat tcttgtgttt tgcctaattt aagtttggca
    10081 gatgatagta ttttaggtgg tggagcaact ttagttaaaa atcaagatga aaaaggtgtt
    10141 tttgtgggag tacctgcaaa aagaaaaata tgaaatgatt ataaaaagat ttttgtttga
    10201 ttctttgtaa atttttttag gtaaaataga gtcaatttat aaaaattttg ttttacacaa
    10261 aggataaatc atgagatttt ttctttctcc tccgcatatg ggtggtaatg aattaaaata
    10321 tatagaagaa gttttcaaaa gcaattatat agcacctttg ggtgaatttg taaatcgctt
    10381 tgaacaaagt gtcaaggctt acagtaaaag tgaaaatgcc ttagctttaa attcagccac
    10441 agtggctttg catttagctt taagggtggc aggggtaaaa caagatgata ttgttttggc
    10501 ttcttctttt acttttatcg cttcagtagc acctatttgt tatcttaaag caaaacctgt
    10561 atttatagat tgtgatgaaa cttataatat cgatgtagat ttattaaagc ttgctattaa
    10621 agaatgtgaa aaaaaaccaa aagcattgat tttaactcat ctttatggca atgcggctaa
    10681 aatggatgaa attgttgaaa tttgcaaaga aaatgaaatt gttttaatcg aagatgctgc
    10741 tgaagcttta ggaagttttt ataagaataa agctttagga acttttggag aatttggagc
    10801 ttattcttat aatggcaata aaattatcac cacttcaggt ggaggtatgc ttataggaaa
    10861 aaataaagaa aagattgaaa aagcaagatt ttatagcact caagctaggg aaaattgttt
    10921 gcattatgaa catttagatt atggttataa ttaccgctta agcaatgttt taggagctat
    10981 tggcgtagcg caaatggagg ttttagaaca aagagtgctt aaaaaaagag aaatttatga
    11041 gtggtataaa gaatttttag gagagtgttt tagcttttta gatgaattag aaaattcaag
    11101 aagcaatcgc tggttaagta cagctttgat tgattttgat aaaaatgaac ttaattcttg
    11161 tcaaaaagat ataaatatca gtcaaaaaaa tattactttg catccaaaaa tttcaaaact
    11221 catagaagat ttgaaaaatg aacaaataga aacaagacca ttatggaaag ctatgcacgc
    11281 tcaagaagta tttaaaggag ctaaggctta tcttaatggc aatagtgagt tatttttcca
    11341 aaaaggaatt tgtttgccaa gtggcacggc gatgagtaaa gatgatgttt atgaaatttc
    11401 aaaactgatc ttaaagagca taaaggctta aaatgatttt ttataaaagc aaaagattag
    11461 catttttttt aacttcagat attgttttaa ttttacttag cgtttatctg gctttttctt
    11521 tgagatttag tggagatatt ccgagtattt tttatcatgg tatgatggtt tctgctatta
    11581 ttttgcttgt tttaaaactt tcatttttgt ttgtttttag aatttataaa gtagcttgga
    11641 gatttttttc tctcaatgaa gcaagaaaga tttttatcgc tttgctttta gctgagtttt
    11701 gtttttttct tattttttat ttttttagtg atttttttaa tccttttcca agaagtgcta
    11761 ttgtgataga ttttgttctt tcttatatgt ttataggtac tttaagaatt agcaaaagaa
    11821 tgcttgtgga ttttaaacct tttagaatga aagaagaaga agaagaaact ccttgtattg
    11881 tagtaggggc aacttctaag gctttgcatt tgttaaaagg tgcaaaagaa ggttctttag
    11941 ggctttttcc tgtaggcgta gttgatgcga gaaaagagct tatagggact tattgtgata
    12001 aatttattgt agaagaaaaa gaaaaaataa aatcttatgt agaacaaggg gtaaaaactg
    12061 ccattattgc tttaagactt gagcaagaag agcttaaaaa actttttgaa gaacttgtag
    12121 cttatggtat ttgcgatgta aaaatatttt cttttacaag aaacgaagca agagatatca
    12181 gtatagaaga cttgcttgct agaaaaccaa aagatttaga tgatagtgct gtggcggctt
    12241 ttttaaaaga caaggtagtt ttggtaagtg gagcaggtgg aactataggc agtgaacttt
    12301 gtaagcaatg tattaaattt ggtgctaagc atcttattat ggttgatcat agtgagtata
    12361 atctttataa gatcaatgat gatttaaatt tatataaaga aaaaattact cctattttac
    12421 tgagtatttt agataagcaa agtttagatg aggtattaaa aacttataaa cccgagctta
    12481 ttttacatgc agccgcttat aaacatgtgc ctctttgcga acaaaatcca cattcagcag
    12541 taatcaataa tattttagga accaaaattt tatgcgacag tgctaaagaa aataaagtag
    12601 ctaaatttgt gatgataagt acagataaag cagtgcgacc aacaaatatt atgggctgta
    12661 ctaaaagagt ttgcgagctt tatactttaa gtatgagtga tgaaaatttt gaagttgctt
    12721 gtgtgcgttt tggtaatgtt ttaggttcta gtggtagtgt gataccgaaa tttaaagcac
    12781 aaattgccaa taatgagcct ttaactttaa cgcaccctga tatagtgcgt tattttatgc
    12841 ttgtggctga ggcagtgcaa cttgttttac aggctggagc tatcgcaaaa ggaggagagc
    12901 tttttgtttt ggatatgggt aggcctgtga aaatcataga tttagctaaa aaaatgcttt
    12961 tactttctaa tcgcaatgat ttagaaatta aaatcacagg tttaagaaaa ggtgagaagc
    13021 tttatgaaga gcttttgatt gatgaaaatg atgctaaaac gcaatatgag agtatttttg
    13081 tagcaaagaa tgagaaggtt gatcttgatt ggcttaataa agagatagaa aatttacaaa
    13141 tatgtgaaga tatttcagag gctttattaa agattgtacc tgaatttaaa cacaataaag
    13201 aaggcgtata atgtatataa aagatataca aagatttgaa gataatcgct atcgtgctag
    13261 ggcttatatg agttatattt taacaagaaa tctgcccaat aaacttcctg acattcacct
    13321 tgaaacgatt aaaacagctt tggataaaat agctcatgaa gttgttgttt ttgatgcttt
    13381 gtatatttta gatatttcag gcatgcaaat agaaaatgcg atttccttaa ataaggctca
    13441 tgaaatagga cagggtgagg atagaagtac tcgttcttat ttctatagag ctgtaaaatt
    13501 aagacgatgt gttttgagcg atccttatcc ttcggtttta aataatgagc tttgcgtgac
    13561 agcttctatg ccaatttacg atgataaaaa taacttgctt tttgttgttt gtattgatat
    13621 aaaacttgaa gatattttaa agattattca agcaggaaaa tttgaatttg tttttactca
    13681 atttagtcgt tcggtatatt tttgcttcgc actggtttta tttgtgatta cttgtttttt
    13741 atttcaaaaa ggttttttta gtctttttga taatcaagct ataggtatag aacatatgtt
    13801 tgaaagtacc atcgctataa ctttggcttt agctattttt gatttggcaa aaactttgat
    13861 cgaacaagaa gtattaggaa ggacaaaaaa agaagaaggt ggaattcaaa aaactatggt
    13921 gagatttttg ggttctatta tcattgcttt agctatagaa gctttgatgt tggtatttaa
    13981 acttgctatt ggtgatcttt ctcagatgat ttatgcgatt tatcttatcg gtggagtgag
    14041 cttgcttctt ttaggtttaa gtgtatattt atttacggtt aagtataaaa ataataatat
    14101 ttgagtaaaa atttaagtaa aagatgatat aatgctgttt tttaaaattt tttagcttga
    14161 ttaataaggc taaaaagggt aaaataaaac tataaaaact ttgaaaggac gaaattgtga
    14221 aattgttagt tgttgatgac agttctacta tgagaaggat tattaaaaat accctaacaa
    14281 gacttggaca cgatgatgtt ttagaagctg agcatggcgt tgaagcttgg gatttattaa
    14341 ctaaaaatga agatgtaaaa gttttaatta cagattggaa tatgccagaa atgaatggct
    14401 tggagttggt aaaaaaagta agagcagaga aaaaatatga agatatgcct atcatcatgg
    14461 ttacaactga gggcggaaaa gctgaagtga ttactgcttt aaaagctggc gtaaataact
    14521 atattgtaaa accttttact ccacaagttt taaaggaaaa acttgaagat gttttaggaa
    14581 caggaagtgg agaaggtgca gctgagtaaa ggctgatttt taaaattcta aatgcaaaaa
    14641 aaatattatg aattgttctt tatcgtagaa gagcggtata aaaatttatt tcttgatttt
    14701 gcttttgatt taggtataga agccatagaa gagaaagata atggtgttta cattagatcc
    14761 catgagagtt tagaagagtt ttcatgggca cttgaaatat ttgctcaaaa acttacaact
    14821 actttcaatt taaaccataa aattatttct aatttaagtc ttgtagagaa agaaaacaag
    14881 gactggatac aagaatataa aaaaggcata aaacctatct tagtggataa tgtttacatc
    14941 catacaactt ggcaagaaga aaagaagaat tgtataaata taaagattaa tccagcctta
    15001 gcctttggct caggacatca cgaaagcaca tattcttgtg taaaattttt acaaaaattt
    15061 tctaaaagta aattaagagc tttagatctt ggttgtggta gtggaatttt gggtattatt
    15121 atggcaaagt ttggttgtaa tgttgaaatt tgtgatactg atgagttggc tattgatagt
    15181 tctttagaaa atgcaagatt aaatggtgtc gattttcaca aggcttggtg tggatctata
    15241 gataaagcaa atggtttata taatctaatt gttgcaaata tcattgcaga tgtgatttta
    15301 attttagaaa aagatattaa aaaccattta gaagataatg ctatacttat tttgtcagga
    15361 attttagata aatattcaac aagaattaaa gaaaaatttc aagatttgga actcattgat
    15421 gaaatgcaaa tcaatgagtg gtgtagtttt gtatataaaa ataataaaaa aggataagta
    15481 atgaataata atacccaaaa taataagggt aatccgcagg gtaataattt ttttaacaaa
    15541 aatcccattt ttatttttgc gatttttgca attgtaatga taattatttt taagggattt
    15601 tttgatggca atggttcttt tggcggggca ttgaatggca atgaagtaaa taaaaatgtc
    15661 ccttattctg agttaaaaaa gcttattgaa agtggacaaa tcaatcaagt tagtatagga
    15721 caaacaacaa tcaaagcgat ttcaagctct cacaatactg tttatacagc aaaaaaagtt
    15781 aatgatcctg agcttgtgag tttactagat agtaaaaata tcgcttatgg tgcgtattct
    15841 gaaacaaatt ggtttacgga tatacttttt tcatgggttt tgccagtatt tattttcttt
    15901 ggtatttgga tgtttttggc aagtcgtatg caaaaaaata tgggaagttc tatattgggt
    15961 ataggaagtt ctaagaagct tgtaaattca gaaaaaccta aagtaaaatt tagcgatgta
    16021 gctggtgttg aagaagctaa agaagaagta aaagaaattg tagatttttt aaagtatcct
    16081 gaaagatata ttaaattggg agctaaaatt ccaaaaggac ttttacttgt tgggcctcca
    16141 ggtacaggaa aaactttgct tgcaaaagca gttgcaggtg aagctgatgt gccgtttttt
    16201 agtgtttcag gttcgtcttt tatagaaatg tttgtgggtg taggtgcttc tcgtgtgaga
    16261 gatttatttg aaaatgcaaa aaaagaagct cctgctattg tttttataga tgaaatagat
    16321 gctattggta aaagtcgtgc agcaagtggc atgatgggtg gaaacgatga aagagagcaa
    16381 actttaaatc agcttttggc tgaaatggat ggctttggga cagaaagttc cccagtcatt
    16441 gttttagcag caacaaatcg cccagaagtt ttagatgcag cgcttttaag accaggaagg
    16501 tttgatagac aagttttagt tgataaacct gattttaaag gtaggtgtga tattttaaaa
    16561 gtgcacatga aagatgtcaa aatctcccca aaagttaaag tagaagatat agcacgctta
    16621 accgcagggc ttgcaggagc tgatcttgca aatattatta atgaagcagc gcttttagcg
    16681 ggtagggatt ctaaaaaata tgtagaacaa aatgatttag ttgaagctgt tgaaagagct
    16741 atagcaggac ttgagaagaa atcacgtcgt attaatgaaa aagaaaagaa aattgttact
    16801 tatcatgaat gtggtcatgc tttgattgct gaaactacca aaggcgcaaa acgtgtaagt
    16861 aaggtttctg tgattccgcg tggtcttgcg gctttaggtt atactttaaa tactcctgag
    16921 gaaaataaat ttttaatgca aaaacatgaa cttatcgctg aagtagatgt acttttgggt
    16981 ggtcgtgcag ctgaagaagt gtttataggt gaaatttcaa cgggtgcaag taatgattta
    17041 gaaagagcaa ccgatatcat aaaagctatg atttctatgt atggtatgag tgaaattgca
    17101 ggacttatgg tacttgaaaa acaaagaaat actttcttaa gtggtggaca aactatcaaa
    17161 gattattctg aaaagatggc agaatcttta gatgattatg taaagaaaac cttggatgaa
    17221 cgctataaag atgttaaaga tactttaaat acttataagg gagcgattga gactatggtt
    17281 gcagcccttt atgaagaaga aactattgaa ggtaataaag tgcgcgagat tattaaagag
    17341 tttgaggatc aaaatagtct accaactcgt ttacaagaac tcgaagaagt taaaactgaa
    17401 gttaaagtag aagaatgaaa gattttattg caaaagatgg atatttaagt cttattattt
    17461 taagcttaat ttttattttt gtgtggattt tttattcttt ttccatcttg ctattagcat
    17521 taattgtaat ttgtattttt ctttttaggg cgcccaaaag agaacttgtt tgtagtgatg
    17581 aaaaagctat ttttgcacct atggatggta gggttactaa aatagaaaat attcatcata
    17641 aagatttggg tgaatgtgtt gaaattacta ttaaaaatgc tctttatgat gctgggaatt
    17701 ttaatacacc ttttgcaatg tctataatag atattcgttt acgacatggg ctttttttgt
    17761 gcagtgaatt aaaatctgca aaaatgatga atgaaagagc ttttattttg gcaaaagtta
    17821 aagagaataa aacgatagcc ttgcgaatct atgcaggttc ttttgataga aaattaaagc
    17881 ttgataatat ttctcatgat ttaaaagcag gagatagaat gggtttttta attaatggct
    17941 ctataagttt acttttacca aaagatacta gaattcatat aggcttaaat gatgaaatta
    18001 aagcaggttc attgctaggc tattttgcgt aaggaaaaat aatgaataac agaccgcaac
    18061 taatttatat tttacccaat ctttttacag ctgcttcagc ttttttaggg gttatttcta
    18121 ttatagcttc aatacatgga aattattata cagctttgat ttatattatt ttatctttga
    18181 tttgcgatgg gcttgatggc cgtgttgcaa gacttacaaa ttctacttca aaatttggag
    18241 tagaatttga ttctttggct gatctagtag cttttggagt tgctccagcg gttctttttt
    18301 atatggcgat aggttatgat tttggaaaac ttggatcttt gattacagct ttttttgtgg
    18361 tttttggagc tattcgtttg gcgagattta atgttaccac aggcacttat gaaccctccg
    18421 tttttatagg tcttcctata cctactgcag cagttgtgag tgctatatgg acttatgcgt
    18481 ttatcagtta tgatttttta aagccttatg gcgtagtttt tttggtgctt caagcaattt
    18541 tagggctttt aatggtaagt aatatacgtt atcctagttt taaaaagctt gattttaatc
    18601 gttctagtgt tttaaaagtt ttgattattt taattataat attttcattt ttatatcttt
    18661 accctcttga aagtttagta attttagcaa gcttgtatgt gctttatgga attattcggg
    18721 ttttatatac cattatcgtt tcaaaattta agataagaaa tcaagagtaa aatttttcaa
    18781 tgacttcgca ttcttcttga gtgaagccag ctttgattct tgcttgaatg ttaagttttt
    18841 ttcccgcaag agagaattgt ttaaatgttt tgcaaagctc aataaaatca tacctgtttt
    18901 gatttgcaaa tttccaccaa gtatctcctt ttttaacgtg ttttatttca tcattaagta
    18961 taatttcaag atattccatt agaagatttt taatggaatg attggaactt tgaagttttt
    19021 gaacaacaaa ggggttggca tcaagccctt tagcttctaa acctctatga actactccca
    19081 ttctaaagct taaagagtct tttgtagctt ctagagcaga ttctaaatta tcatgcactg
    19141 gaaaatttcc atatttgtaa ctaagttctt taagtgctga atttaaaagt ttgaaatgtt
    19201 taatttcctc atctgctacc tccagccaat cgtaataaaa ttgcaaaggt agatttttaa
    19261 agcgataact cgcatctaaa gccaggttaa ttgcattaaa ttctatatga gcgactgaat
    19321 gaattatttt agcaagcgca tgagttgaat tgacaaattt aggccttctt atacgcgtag
    19381 gatgaagcaa ggtaatttgt tgtgatgtat tttttttgaa aatgctttga tgctcgtgat
    19441 taaaaatcaa tttgtggctt ttaaagtctt cataaaaatt ttgaaaagag tgaaatttta
    19501 tagttatatt tttttcatat aaaatatctt gaag
//
LOCUS       DARGBD010000021        18851 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.021, whole genome shotgun sequence.
ACCESSION   DARGBD010000021 DARGBD010000000
VERSION     DARGBD010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18851
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.021"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            125..1018
                     /gene="msrP"
                     /locus_tag="SFZ04_000650"
     CDS             125..1018
                     /gene="msrP"
                     /locus_tag="SFZ04_000650"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEG8064952.1"
                     /translation="MLITPEKLYKQRRNFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            1018..1590
                     /locus_tag="SFZ04_000651"
     CDS             1018..1590
                     /locus_tag="SFZ04_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEG8064953.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILGIFAAFWAILHFLNYFIFDRNAQILRLFDDISHR
                     LLEASGFIAFLIIFLMLLSSFKIFKKLSKIRKLGYLCLVLASYHYFLTPKIPMFWEWS
                     ALIIALFYFIVRYTKTLKKLKSNNLTFIKT"
     gene            complement(1555..3267)
                     /locus_tag="SFZ04_000652"
     CDS             complement(1555..3267)
                     /locus_tag="SFZ04_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8064954.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFARIQLYERLSFIQKSAYNS
                     EIKNQIKLYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESS
                     ISREMNSLLSLISENDLERHKNKKLLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEI
                     LQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDK
                     KVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKW
                     VGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIF
                     LEQIERFSGVIIATTNFLENLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFE
                     KDFDINILSNYELSGAQILMVVKNTALKVAVSKDGVFKMQDFIESIQKELNSSFDKSK
                     IVGF"
     gene            complement(3267..4091)
                     /locus_tag="SFZ04_000653"
     CDS             complement(3267..4091)
                     /locus_tag="SFZ04_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064955.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIIDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKSVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(4102..4578)
                     /locus_tag="SFZ04_000654"
     CDS             complement(4102..4578)
                     /locus_tag="SFZ04_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064956.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKKVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(4587..5078)
                     /locus_tag="SFZ04_000655"
     CDS             complement(4587..5078)
                     /locus_tag="SFZ04_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEG8064957.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(5068..6003)
                     /locus_tag="SFZ04_000656"
     CDS             complement(5068..6003)
                     /locus_tag="SFZ04_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEG8064958.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(6007..7176)
                     /locus_tag="SFZ04_000657"
     CDS             complement(6007..7176)
                     /locus_tag="SFZ04_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HEG8064959.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVIDNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(7186..7791)
                     /locus_tag="SFZ04_000658"
     CDS             complement(7186..7791)
                     /locus_tag="SFZ04_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HEG8064960.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCRSNNDNSDTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(7911..8123)
                     /locus_tag="SFZ04_000659"
     CDS             complement(7911..8123)
                     /locus_tag="SFZ04_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEG8064961.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            8284..9660
                     /gene="ccoG"
                     /locus_tag="SFZ04_000660"
     CDS             8284..9660
                     /gene="ccoG"
                     /locus_tag="SFZ04_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEG8064962.1"
                     /translation="MQGHITNYTKERYFVYLIASIIIFALPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYEGQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            9647..10279
                     /gene="cmeR"
                     /locus_tag="SFZ04_000661"
     CDS             9647..10279
                     /gene="cmeR"
                     /locus_tag="SFZ04_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HEG8064963.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            10374..11477
                     /gene="cmeA"
                     /locus_tag="SFZ04_000662"
     CDS             10374..11477
                     /gene="cmeA"
                     /locus_tag="SFZ04_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HEG8064964.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEVPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            11477..14599
                     /gene="cmeB"
                     /locus_tag="SFZ04_000663"
     CDS             11477..14599
                     /gene="cmeB"
                     /locus_tag="SFZ04_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HEG8064965.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGVIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLVGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            14592..16070
                     /gene="cmeC"
                     /locus_tag="SFZ04_000664"
     CDS             14592..16070
                     /gene="cmeC"
                     /locus_tag="SFZ04_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HEG8064966.1"
                     /translation="MNKIISISTIASFTLLISACSLSPNLNTPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKETYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNT
                     KYSYANSIVDVIKAFGGGFEQNEDTSKNIKEESKNLDISFRE"
     gene            complement(16093..16344)
                     /locus_tag="SFZ04_000665"
     CDS             complement(16093..16344)
                     /locus_tag="SFZ04_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064967.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINDTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKVYEITDTDLDKDF"
     gene            16472..17818
                     /locus_tag="SFZ04_000666"
     CDS             16472..17818
                     /locus_tag="SFZ04_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG8064968.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKNKGFDFTSMYVGGGTT
                     LIDEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            complement(17815..18267)
                     /gene="hemJ"
                     /locus_tag="SFZ04_000667"
     CDS             complement(17815..18267)
                     /gene="hemJ"
                     /locus_tag="SFZ04_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HEG8064969.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(18251..18721)
                     /locus_tag="SFZ04_000668"
     CDS             complement(18251..18721)
                     /locus_tag="SFZ04_000668"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEG8064970.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            complement(18714..>18851)
                     /gene="glmM"
                     /locus_tag="SFZ04_000669"
     CDS             complement(18714..>18851)
                     /gene="glmM"
                     /locus_tag="SFZ04_000669"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="catalyzes the conversion of glucosamine-6-phosphate
                     to glucosamine-1-phosphate; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEG8064971.1"
                     /translation="KNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALN
                     G"
BASE COUNT         6675 a         3001 c         2586 g         6589 t
ORIGIN      
        1 aatcactata aagaattttg cgaagaaata ttctacaata tagaacttga aaaaatcaca
       61 caaaattaat cctgtattaa cattgttata gtttaataat aaaaattttt aataaggaaa
      121 aattatgctt ataacacctg aaaaacttta taaacaaagg agaaattttt taaaacttgg
      181 agcgggtgct ttaataagtt caagcgtgct tgcttctaaa ctatctgctt taaatttcac
      241 aagcgatact aatccaaaca aacttgaaat cagcgatgaa gaactggcta caaattatgt
      301 caatttttat gaattttcaa cagataaaag aaaggctgta tcattggcac aaaatttcaa
      361 tactcaaaat tggaaaatcg atatcagtgg agaaatagaa aaacctttaa ctttaagcat
      421 ggaagatatt ttaaaatttc cactagaaga aagaatttat cgttttcgct gtgttgaaac
      481 ttggtctatg gtggtacctt gggtaggctt tgaattgcgt cgtttgattg aaatggcaaa
      541 acctacaagc gaggcaaaat ttgttaaatt taccactctt ttagataaga gccaatttcc
      601 cgatcaagac gctttatttc caactataga ctatccttat gtagaaggac ttcgcatgga
      661 tgaagctatg catcctctta ccttgcttgc agtaggaatg tataaaaaag ccttaaagcc
      721 tcaaaatggc gctccaatac gccttgttgt tccttggaaa tatggcttta aaagtattaa
      781 atccatagtt aaaatagaat ttaccaaaga acagcctaaa tccacttggg aaagttacgc
      841 tccaagtgaa tatggttttt atgctaatgt caatcctaat gtttctcatc ctagatggtc
      901 tcaagctaac gagagggctt taggagactt ctttaccaaa cctactttaa tgtttaatgg
      961 atatgaaaaa gaagtggcaa gtttatataa aaacatggac ttgaaagtga atttttaatg
     1021 cagacaaaat actttaaatt tcttgcttat tttagcttta tcataagttt aatctatggc
     1081 ttttatcata tcataaaagc ctttgatttt gtaaaagaag cctatattta cactggaata
     1141 tttgctttaa tctttttaaa tttaagtctt ttattttctt tacttaaatt taaaaaaaca
     1201 aaaaattatc ctaaaatttt aggtattttt gcagcttttt gggcgatttt gcacttttta
     1261 aattatttta tttttgatag aaatgctcaa attttaaggc ttttcgatga tatttcacat
     1321 cgtttattag aagcaagtgg atttatcgca tttttaatca tatttttaat gcttttaagt
     1381 tcttttaaaa tctttaaaaa acttagtaaa atcagaaaac taggatattt atgcttagtt
     1441 ttggcaagtt atcattattt tttaacccca aaaattccta tgttttggga atggagtgct
     1501 ttaattatag ctttgtttta ttttatagtt cgctatacaa aaacattaaa aaagttaaaa
     1561 tccaacaatc ttacttttat caaaacttga atttaattct ttttgtatgc tttctataaa
     1621 atcttgcatt ttaaaaaccc catcttttga tacagctact ttcaaagctg tattcttcac
     1681 caccattaaa atttgtgctc cacttaattc ataatttgat aaaatattta tatcaaaatc
     1741 tttttcaaat aatgcttttt taggtagaaa tttttcccaa attttaagcc tatctttaaa
     1801 atcaggtttt ttaaattcta tcttataatc aaatcttctt gaaaatgcac tatctaagtt
     1861 ttctaaaaaa tttgtcgtag cgataatcac accactaaaa cgctcaattt gctctaagaa
     1921 tatattttgc atttgattat gcattttatc gctaccacta cttccatcta cacgcgtact
     1981 taaaaactga tcagcttcat tgagaagtaa aataggactt tgtttacaag tttgcacgat
     2041 atttttataa gtatcaaaaa tttttcttac attttgctca ctctctccaa cccatttgct
     2101 caaaatttta gaacagtcaa aactaaggac agattttttc attgatttag ccatagctaa
     2161 agctgacata gtttttccag taccagcagg accataaaaa ataattttag cttctatatt
     2221 tttattactc tttatacccc aagaatgaag tctttctagg acttttttat cttgttgttt
     2281 taaaatattt tctaaaagct cttttgtatt ttcaggcata ataatatcat tgatgtcagt
     2341 gcttggttct ataagctcga aaatatcttg atcttttaaa acactttcaa ttttgatttt
     2401 tttactttgt tttggttcaa aatttataat tctttgtaaa atttcatcga taataaaaaa
     2461 acttttagaa atatctccaa aagcatttaa atattcatca tactcgatta agtttaaaag
     2521 aggagcattt tcttgtaata gttttttatt tttatgcctt tctaaatcat tttcactgat
     2581 taaagaaagt aaagaattca tttctctaga aatcgaactt tcattactta aggcgtattc
     2641 ttcttttaaa agtgctagaa aaataatttg ttctttatgt tcaagattgt attctttaaa
     2701 aatatcagcc aatacattat aaaatttact tttttttagt ctttctttga tatgtttttc
     2761 ataaagttta atttgatttt ttatttcact attataagca cttttttgta taaaacttaa
     2821 tctttcgtat aattgaatac gcgcaaattc atcttttaaa tattctaaat aatctgcata
     2881 agcctcttgt ttctcaaaat ttaaacgagg ttttgcttct aaaaattcta aaaaatattc
     2941 acttagacta agctcacttt gcaataaggc aagagttaat gtttgagttt tattattttc
     3001 taaactttta aaaaaactcg aattttgatt tacaaaacct ctttcgataa gtttttttaa
     3061 atcctccaaa gcatcaagat aaagatactt atcatttcca aaaattgtcg ataataaagt
     3121 aaaggcattg atagaagaaa tagaaacgac ataatttcta caaagttctc taagaatcaa
     3181 agcctcattt ttagcacact taagctcttt ataaatttga gtatcttcta tatttttcaa
     3241 acttaaaaaa ttttttaatt tttccattat tttttaaatt ccttaagctc atcttcgtta
     3301 aattctacgc aaatattttc atctaaaaaa tgaccttcaa aaggtagata acaaattttt
     3361 agttttccat tattaagcaa aaaattatta ttaaattgta aattttgcag atcttcaaaa
     3421 cactcatcac atgtattttt aagcttctca tgtaaaagat tttgaaattt ttgattttca
     3481 gtattataca aatcatttag ttttacaaat gcgtgagcat taatatcata aacaaaatta
     3541 tttaactcta aaatagcacg gctcatacca tcttcataaa aataatacca ttcttcaaaa
     3601 ctaatttttc catcttgtaa aaaaataggc ttttggcgaa tttgttcaaa actaaataca
     3661 ctcttatgaa caggatgaaa ttctttaaaa tcatcattaa aacctataaa atcaagacta
     3721 cgctttatac gaatgccatc ttgcgtttcg acaagttcta aagtagttgt tcctaaattt
     3781 tctccttgaa aatttttatt atcatatgta agcattttag aagaattgat tttatatttt
     3841 ttacgctcat cctgccaaaa atcatttgtc ttaacgagcg gaatctctaa atttccattt
     3901 atatcatcaa taattaaaaa actagaactt gtttgatttt tatccctgtc aaaaagtgga
     3961 gtcataggcg cattatcata aactatggca aaaatttctt tatcctgcaa atgataaaaa
     4021 tacaattcac ctttataaac ttgcgctaaa gctagattta caaagcaaaa taccagtaaa
     4081 aaaaatttca aactctatcc ttcaattttg aatatgcgtt aagataattt tagtatgtga
     4141 aattttatca aaaaaactta ctttattatc acaaacttga taaaaaattt cataattttt
     4201 tgcttttaaa ttttgttcaa aaccacaatc agttttttct aaatttttac cctgccataa
     4261 agcatttgcc tttaaaatat cacttaaaat atcatcataa tatacatttt taaaaaattt
     4321 ttgattaaac acttttttat cataacacac tgcattgata caaattttat ctttgatttt
     4381 gagttcaaaa aaagcttgcc ctagtttata aacttctaaa tttaaagcat tattttcttt
     4441 ttttaaaaaa gctgcgtcat tgatttttat cataggagaa gcaatcaaaa ccatcaagct
     4501 ttgactcgaa aaattttgat ttttcacact acaagcacaa agaaaaaaaa taaaacacag
     4561 ggctaaacaa tgcttcaaat ttgaccttat ttaagatttt taaaactgat atttaactct
     4621 aaatcaagct cttttacaag cttcatcaca gcttgtaaat catcaatttg ttttgctaca
     4681 acacgaattt cttcaccacg aatcgaagaa ttaactttaa gtttgctatc tttgatagct
     4741 ttattgattt ttttggcatt ttcactatca atagcatcgt ttgctttcaa atttaaacga
     4801 aacattgctc cactttcacg agaaagctct ttaatagcat taggattaat tcctcttttg
     4861 ataagtttag aaatcactat atcttttaaa acatcaagct ttccttcact agaagaactg
     4921 agtttaaaaa tactctcttt ttcgcttaaa tcaatctcac acttaattcc ttttaagtca
     4981 taacgactat caagttcttt tttagcttgt tcaaaagcat tttttaactc ttgtttatct
     5041 aaagctgctg aaatatcaaa actatgttca cttgccattt tctatccatt cttttaaatt
     5101 attataaact atatccatta aagcatttaa agcctccttg ctcgcccacg caacatgagg
     5161 agtgataata agattttctt tatttttaat gcttaaaagt ggatgatttt tcatcatagg
     5221 ttcaatttct aaaacatcaa gccctacacg aatatttttt tcatctatga ttttagctaa
     5281 atcattttca ttgacaatcc cacctcttcc tacattaatc aaaatcgcat tatcttttaa
     5341 aagctttaat tcttcaaagg cgagtaaatt tttggttttt tcatttaaag gtgcgtggat
     5401 acttataata tcgcaagttt ttaataaatc ttttaattcc aaatgtacaa aatctgcgtt
     5461 tttattagct ccactcgtag aataataata aatttcggct ccaaaagcct ttgaaatttt
     5521 tgccacttct ttacctatgg ttcctaaacc tataatacca tgttttttac cacttaaggt
     5581 gtttaaaatt ctactataat ctgtaaaaat aggactttca caccatttac cctctttgct
     5641 ccatttgtca taataaagca cttgatttaa aaaagcaaac ataaacgcaa aagtatgttg
     5701 caccacactc atagtagaat acccagcagc attttttaca ataatacctt tttctttagc
     5761 atactcaata tcgatattat taacccctgt agcagtttcc aaaatgagtt ttaaattttt
     5821 acaagcatca atcacatctt tatcaattac aaccttgttt gtcatggcga cattagcatc
     5881 ttttaaacgc tctatggttt gctctttatt tgttgtggta taaatttgca aagaaccaaa
     5941 tttttcaaaa acacttaaat cataatcccc taaagttgcc gcatctaaac aaacaatttt
     6001 catttttcaa tcctttataa tatgtcctac aaatttagaa taattatcaa gcacaagtcc
     6061 tccttttcta aatcctaagc cacacccttc ataagcaaag aaaacacctg cttgatagta
     6121 ttcgttttca catgaattaa actctacata ttcttgataa atagccttat tattcccata
     6181 aggacctaca ttctcatgca aagtttttcc atctttaatt atactgatat ttgcaccttc
     6241 tctaccaaaa acaggttttt taacatagtt tttaccttcc aaaggagtat cttttgtttc
     6301 taaaagtaat ggatgatttg gataaagttc ccatagaatt tttaaaattc ccttagattg
     6361 aaataaaagc gtataagcag gatttaaaat aattgctctt tgattacgca tgatttgagt
     6421 taaaagcatg gcaagttcac cctcttctat ggctatatct tcccaaggaa taagcttaaa
     6481 ccaatactca taattttcgc cctctttaaa aataccctct tcgctaaatt ccacctcatc
     6541 cacaaaggaa aaattagttt gaaaacctgc ttcattggct atatgtgcaa gcaattttgt
     6601 agtgatttct tcttctttac ttcctgcaac acttgaaaaa agaattttcc atccttgata
     6661 atgctcttca aacccttcaa cactttcatc aagggtaata agtcttttaa aattatccat
     6721 caaactttca taaatgctat taaattgtgc gctttcatcc attccatttt gttttaaaag
     6781 tgcccattgt aaaatcgcac tttcaaaaag agcagtaggg gtatcagcat taaattctat
     6841 aagttttata ggcttgccat caagtccacc cgctaaatca aaacgcccat ataaatgcca
     6901 atgaacctca ttttcccaac tcatcttaat tgcatcaata agattaaaag gaattccaag
     6961 ctcatcaaaa cgatcattat caatcacttc ttgcgctgca gcaataaaca tatcataaag
     7021 ctcatttacc gcttcataat aagcattagc ttcactttcc ttaacacaaa ctaacttatt
     7081 gctaatataa tcacttccat cttcatctgt atgccaagaa aaacctatat tttctaaata
     7141 atctttttga agtttatcta cttgtagtaa ttgcattatt tatccttaag aaccaaaaga
     7201 agaactagaa cttgtggctt tagagcctcc gccaaaaaag cctgattttt tagcacttga
     7261 agcagagctt gttgtgcctg ctttattaaa actattaaca ctcctttgat aagcactttg
     7321 atttgaaaaa gcaccgcgtt gttggttggc aaaattttga ttattgaaaa gttttgaacc
     7381 tatccaactt cctaaaatag cacctgcagc acttgcgagt aaagtttccc ctaaactcaa
     7441 tcccccacta ctgatttgtc cattgtcttt agttaaattt gaagttccat tatcaatttt
     7501 agctgcttct tctttaatca aagcatccat ttcttctttg gataaaattc tttctgtgcc
     7561 attaagatct tttaaaacta cccttgtttc atcacttgga tattgatctt tgattttata
     7621 ctgccctgga gctgtttctt cgataattac aaaagctcct tgagcattag ctgcttgatt
     7681 taaagtatct gaattgtcat tattacttct acaacctgct aaagcacctc cagcaacagc
     7741 tgctaaacca cctatcatac caatttgaat gatttttttg atttttttca taagtttatc
     7801 ctaaaaacag aaaatttaaa ttagaaattt taacaaaaaa taataaatac tttttaattt
     7861 aataccaaat gaagtttgta gatataaaaa agccctttcg ggcttttggg ttagagtctt
     7921 gactcgtagc gtctaagcat ataaagtctt ttaagcattt ttttgcgtgc tgaaattttt
     7981 tgttttttgc gaatttcagt cataggctca aaaaatcttc ttgctcttac ttcagtcaca
     8041 actagatttc tatctacttg ttttttgaat ttacgatacg cttcatcaaa agactcgtta
     8101 ggatgcacct tgattcctgg cacagtcctc accacctttc tgtgtaaatt tttgttgtga
     8161 aatataatta taaaacactt cttattaatt ctaacttaga aagcatttaa aaattgtttt
     8221 agtttttatc ggttataatc cttaattaca aagtactaaa aaattataat ttaaggtcta
     8281 aaaatgcaag gacacattac aaactataca aaagaacgat attttgtata tttaattgca
     8341 agtattatca tatttgccct acctttcata agaattaatg agaatcattt ttttctttta
     8401 agttttgatc attctaaatt aaacctattt tttatttctt tttcaacaca agaattttat
     8461 ctcatgcctt ttgttcttat atttcttttt ttatttattt tttttattac aactttaggt
     8521 ggaagaattt ggtgtgcttg gagttgtcca caaacgattt ttagagttat atatagagat
     8581 atcatacaaa ctaaatttct taaaattcgc aaaaatatca ataacaaaca aaaagaatat
     8641 gagggacaat attttaaaaa atttcttgga gtaataattt tttattttat atctttagtt
     8701 gctgttagta atttactttg gtactttatt cctcctgaag attttttcaa ttatattcaa
     8761 aatcctggcg agcatctact tttacttgga attttatttt gtgctagctt actttttact
     8821 ttggatatta cctatttaca agaaaaattt tgtgtttatg tctgtcctta tgcaagaata
     8881 caatctgtaa tgttcgatca tgatacaatg caagtgatct acgatgaaaa acgcgggggc
     8941 ttgatctatg atggacacac caaacttcat aaaaaaccgc ctgagggaga atgcataggt
     9001 tgcgaagcct gtgttagcat ctgtccaact catattgaca tacgcaaagg aatgcaactt
     9061 gaatgtatta attgtcttga atgtgccgat gcttgctcta aggttcaaag caaatttaat
     9121 cgtccaagtt tgatcaattg gacaagtgca aaagctattg aaacgcgttc taaggttcat
     9181 tatttaagat ttagaacgat agcatatttt atagttcttc taattgcttt actggcttta
     9241 atcatcatgg gaagcaaaaa agaaagcatg cttttaaata tcaatcgtag tagtgaatta
     9301 tataatattt caaatgttaa aggtgaatta gtcatttcaa atgcttatac ctttttgttt
     9361 caaaatacag attctaaacc tcatgaatat tattttacag caaatttaga aggaataaat
     9421 gatggaattg aaatcataag accaaacaaa ccttttaaat taaaagcagg agaacaagtc
     9481 aaaaaaatag ttgttatcag ggctacaaaa aatttagcaa ataatgataa aaaagacgta
     9541 atctttcctt tacatataaa agcttacgca aaggataatg aaaaaatttc ggtttttaga
     9601 aaaagtatat ttgtataccc taaaagcact cttataaagg ataaaaatga actcaaatag
     9661 aacaccatca caaaaagttt tagccagaca agaaaaaatc aaagcagtgg ccttagagct
     9721 ttttttaaca aaaggatacc aagaaacaag tttgagtgat attattaaat tatctggagg
     9781 atcttattct aatatttatg atggttttaa aagtaaagaa gggctattct ttgaaatttt
     9841 agatgacata tgtaaaaaac actttcatct tatttattcc aaaacacaag aaattgaaaa
     9901 tggcacttta aaagaaattt taacttcttt tggtttagct tttatagaaa ttttcaatca
     9961 accagaagct gtagcttttg gtaaaattat ctattctcaa gtttatgaca aagatagaca
    10021 tcttgccaat tggatagaaa acaatcaaca aaatttttcc tataacatac ttatggattt
    10081 tttcaagcaa caaaataatt cttatatgaa aaaaaatgca gaaaaacttg ctgttctttt
    10141 ttgcactatg ttaaaagaac cttatcatca tcttaatgtt ttaattaacg ctcctttgaa
    10201 aaataaaaaa gaacaaaaag aacatgttga atttgttgta aatgtttttc taaatggaat
    10261 caatagctcc aaagcttaaa aaataatttt attaaccaaa attaagatat aattagccaa
    10321 aaatttttgt aataaaaatt acaattttta atttaatttt tcaaggcaaa accatgaaat
    10381 tatttcaaaa aaatactatt ttagctttag gtgttgtgct tttactcact gcttgcagca
    10441 aagaagaagt accaaaaata caaatgccgc ctcaacctgt aacaaccatg agtgctaaat
    10501 ctgaagattt accacttagt tttacttacc ctgctaaact tgtcagtgat tatgatgtca
    10561 ttataaaacc tcaagttagc ggcgtaatag taaataaact ttttaaagct ggagataagg
    10621 taaaaaaagg acaaacatta tttattatag aacaagataa atttaaagct agtgttgatt
    10681 cagcttacgg acaagcttta atggctaagg caactttcga aaatgcaagc aaggatttta
    10741 atcgttctaa agctcttttt agtaaaagtg caatctctca aaaggaatac gactcttctc
    10801 ttgctacatt taacaattca aaagctagtc tagcaagtgc tagagcacag cttgcaaatg
    10861 caagaattga tctagatcat accgaaataa aagctccttt tgatggtact ataggagatg
    10921 ctttagttaa tataggagat tatgtaagtg cttcaacaac tgaactagtt agagttacaa
    10981 atttaaatcc tatttacgca gatttcttta tttcagatac agataaacta aatttagtcc
    11041 gcaatactca aagtggaaaa tgggatttag acagcattca tgcaaattta aatcttaatg
    11101 gagaaaccgt tcaaggcaaa ctttatttta ttgattctgt tatagatgct aatagtggaa
    11161 cagtaaaagc caaagctata tttgacaaca acaactcaac acttttacca ggtgcttttg
    11221 caacaattac ttcagaaggt tttatacaaa aaaatggctt taaagtgcct caaatagctg
    11281 ttaaacaaaa tcaaaatgat gtttatgttc ttcttgttaa aaatggaaaa gtagaaaaat
    11341 cttctgtaca tataagctac caaaacaatg aatatgccat tattgacaaa ggattgcaaa
    11401 atggcgataa aatcatttta gataacttta aaaaaattca agttggtagc gaagttaaag
    11461 aaattggagc acaataatgt tttctaaatt ttttatcgaa agacctgttt ttgcttcagt
    11521 tgttgcaatt atcatttctt tagctggagt tataggtctt acaaatttac ctatagaaca
    11581 atatccttct ttaacccctc ctacagttaa agtaagtgca acttacacag gagctgatgc
    11641 acaaaccatt gcttcaacag ttgcaagtcc tatcgaagat gcaatcaatg gcgcagataa
    11701 tatgatttac atggattcaa cttcaagttc ttcaggaact atgagtttga ctgtttattt
    11761 tgatatcggt acagatcctg atcaagccac catagatgtt aataatagaa tttcagccgc
    11821 aactgcaaaa atgccagatg cagttaaaaa acttggagta acagttagaa aaacttcctc
    11881 aacaacactt gctgcaattt ctatgtattc aagtgatggc tcaatgagtg cagtagatgt
    11941 atataactat atcactttaa atgttttaga tgagttaaaa agggttccag gagttggaga
    12001 tgcaaacgct ataggaaatc gtaattattc tttaagaatt tggctcaagc ctgatttatt
    12061 aaataaattt ggaatcacag ctactgatgt aatttctgcg gttaatgacc aaaatgccca
    12121 atacgcaact ggtaaaattg gcgaagaacc tgtaacccaa aaatcccctt atgtttattc
    12181 aatcactatg caaggaagac tacaaaatcc tagtgaattt gaaaacatta ttttaagaac
    12241 aaataatgat ggatcatttt taagacttaa agatgtagct gatgtggaaa taggatcaca
    12301 acaatacagc tcacaaggac gattaaatgg caatgatgca gttccaatta tgatcaatct
    12361 tcaatcaggg gcaaacgcat tgcatacagc agaacttgtt caagccaaaa tgcaagaact
    12421 ttcaaaaaat tttccaaaag gtttaacata taaaattcct tacgatacaa caaaatttgt
    12481 aatagaatca atcaaagaag ttgttaaaac ttttgttgaa gctctaattt tagttatcat
    12541 tgttatgtat atgttcttaa agaatttccg tgcaacactt attcctatga tagctgtacc
    12601 tgtttcattg ttaggaactt ttgctggact ttatgtttta ggttttagta ttaacttgct
    12661 tacgcttttt gctttaattt tagccatagg gatcgttgta gatgatgcga ttatagttgt
    12721 agaaaatatt gataggattt tacatgaaaa tgagcaaata agcgtaaaag atgctgctat
    12781 ccaagcgatg caagaagtta gctctccggt tatttcaatt gttcttgtgc tttgtgctgt
    12841 ttttgtacca gtttctttta tatcaggttt tgttggagaa attcaaagac aatttgctct
    12901 taccttagct atatctgtaa ccatatcagg ttttgttgct cttaccttaa caccttcttt
    12961 atgtgcactc tttttgcgac gcaatgaagg agagccattt aaatttgtaa agaaatttaa
    13021 tgattttttt gattggagca cctctgtatt tagcgcagga gtagcatata tcctaaaaag
    13081 aaccattcgt tttgttttaa ttttttgtat tatgcttgga gcaatttttt atctctataa
    13141 agcagtacca aattctttag ttcctgaaga agatcaaggt ttgatgatta gcattattaa
    13201 tcttccttca gcttcagcac tccatagaac aatttcagag gttgatcaca taagccaaga
    13261 agttttaaaa actaatggag ttaaagatgc aatggctatg ataggatttg atctttttac
    13321 aagttcactc aaagaaaatg ccgctgcaat gtttataggt ttgcaagatt ggaaagatag
    13381 aaatgtaagc gctgatcaaa ttatagccga acttaataaa aaatttgctt ttgatcgcaa
    13441 tgcttcaagt gtatttatag gcttacctcc tatacctgga ttaagtatca caggcggttt
    13501 tgaaatgtat gttcaaaaca aaagcggaaa aagctatgat gaaatacaaa aagatgtaaa
    13561 taaacttgtt gctgtggcca accaaagaaa agagctatca agagtaagaa caacccttga
    13621 tacaactttc cctcaataca agcttataat tgatagagat aaattaaaac actacaatct
    13681 taacatgcaa gatgttttta acacgatgaa tgcaactata ggcacttatt atgttaatga
    13741 tttttctatg ctaggtaaaa atttccaagt aaatatccgc gcaaaaggtg attttagaaa
    13801 tacacaagat gcgttaaaaa atatttttgt aagatcaaat gatggaaaaa tgataccact
    13861 tgattctttc ttaactttac aaagaagttc agggcctgat gatgtaaaac gattcaacct
    13921 tttcccagca gcacaagttc aaggtcaacc cgcaccaggt tatacttcag gtcaagctat
    13981 agaagcgatt gctcaagtag caaaagaaac tttaggggat gattattcca tagcttggag
    14041 tggatcagct tatcaagaag tttctagtaa aggaacagca agttatgctt ttgctttagg
    14101 tatgatattt gtctttttaa ttctagctgc tcaatatgaa agatggctta tacctttagc
    14161 agtcgtaaca gctgtacctt ttgcggtatt tggatcattt ttattggtat atttaagagg
    14221 atttagcaat gatatatatt ttcaaacagg acttttgctc ttgattggac tttcagctaa
    14281 aaatgctatc ttaatcgtag aatttgcaat ggaagagcgc tttaaaaaag gtaaaggagt
    14341 ttttgaagca gctgttgcag cagcaaaact tcgttttcgt cctatcataa tgacttcttt
    14401 ggcatttact tttggggtct taccaatgat tttcgcaaca ggagcaggaa gtgcttcaag
    14461 acactcttta ggaacagggc ttgttggtgg aatgatcgca gcatcaactt tagcgatatt
    14521 cttcgtgcct ttatttttct atcttttaga aaattttaat gaatggctag ataaaaaaag
    14581 aggtaaggtt catgaataaa ataatttcaa ttagcactat agcaagtttt actcttttga
    14641 tttcagcttg ctctttaagt ccaaatttaa atactcccga agcaaactat agcattgata
    14701 ataagcttgg agccttatct tgggaaaaag aaaacaatag ctctatcaca aaaaattggt
    14761 ggaaagactt tgatgatgaa aatttaaata aagtggttga tttagcactt aaaaataata
    14821 atgatttaaa acttgccttc atacacatgg aacaagctgc tgctcaatta ggtatagatt
    14881 ttagcagttt gttgccaaaa tttgatggta gtgcaagcgg aagtcgtgca aaaacagcta
    14941 taaatgctcc aagcaatcga actggggaag taagttacgg taatgatttt aaaatgggac
    15001 ttaatttaag ctatgaaatc gatctttggg gaaaatatcg cgatacatat cgcgcctcaa
    15061 aatcaggctt taaagcaagt gagtatgatt atgaagctgc aagactttct gttatttcaa
    15121 atacagttca aacttatttt aatcttgtaa atgcttatga aaatgaaaat gctcttaaag
    15181 aaacctatga atcggcaaaa gaaatttata ggattaatga tgaaaaattt caagttggtg
    15241 ctgtaggtga atatgaactt gctcaagcaa gagccaactt agaaagtatg gctttgcaat
    15301 ataatgaagc aaagttaaat aaagaaaatt accttaaagc tttaaaaatt ttaacttcaa
    15361 atgatttaaa tgacatactt tacaaaaatc aaagctatca agtttttaat cttaaagaat
    15421 ttgacattcc aactggaatt tcaagtacca tcttgcttca acgtccagat attggctctt
    15481 ctttagaaaa attaactcag caaaattatc ttgttggagt agctcgcacg gctttcttac
    15541 ctagcctttc tttaacagga ttattgggat ttgaaagcgg ggatttagat accttggtta
    15601 aaggaggttc taagacttgg aatataggtg gaaactttac tctgcctatt tttcattggg
    15661 gtgaaattta ccaaaatgta aatttagcca agcttaataa agatgaagct tttgtaaatt
    15721 atcaaaatac tttgattact gcttttggag aaattcgcta tgctttagta gctagaaaaa
    15781 ctatacgctt acaatacgat aatgcacaag caagcgaaca atcttacaaa agaatctatg
    15841 aaattgctaa agaacgctat gatataggag aaatgtcttt gcaagattat ttagaggcac
    15901 gtcaaaattg gcttaatgct gccgttgctt ttaataatac taaatattct tatgccaatt
    15961 ccatagtaga tgtaatcaaa gcatttggtg gaggatttga gcaaaatgaa gacacgagta
    16021 aaaatataaa agaagaatca aaaaatttag atatatcttt tagagaatag ttcgttctat
    16081 tctctaaata aattaaaaat ctttatctaa atctgtatct gtaatttcat aaaccttgta
    16141 aatagcaggc aataattttc ttatagcata atcaaaatga taaaattgct tatatacctc
    16201 ttctggattt aaatttttag cattcttaaa atcaaatact tcagtatcat tgattttggc
    16261 aatattttca tcaaaataag agtaaaactc tgctctttgt ttaaacaaag catttaaatt
    16321 ttgaacaatt ttggctttat ccattttata tcctttttaa ataatttaaa aacttaatcc
    16381 cattttttat ttaagaaata aaaaatttac tcctatttta gctaaaaatt gataaagtta
    16441 tatcttaaat attttaatat ataggccact tatgaattta tttcaaaatt tagctttaaa
    16501 atactctcat actatgatgg aaaaatccct ccaaaaaggt ttcaatgtcg aacttttaaa
    16561 acaacccgaa gaaaaaattc caaaacaaga caaaagctat atgctttatg cccatgtacc
    16621 tttttgccat actttttgtc cttattgtag ctttcataaa tattattatg atgaaaattt
    16681 agccaaagta tattttcaaa atcttagaga agaaattaaa atcatgaaaa ataaaggttt
    16741 tgattttacc tccatgtatg tgggtggtgg tacaacactg attgatgaag aggaattatt
    16801 aaaaacctta gaactttgta aaaagttatt taatataaaa gaaatttcat gcgaaagcga
    16861 tccaaatcat attgatccaa ataagctttc tatgtttaaa ggtataattg atcgtttaag
    16921 ttgcgggatt caaagttttg atgatgaaac tttgaaaaaa gtggcaagat ataataaatt
    16981 tggttcatct aaagaacttc aagaaaaaat ttcaaaagct ttaggaattt tacctatttt
    17041 tagtatagat cttattttca atcttccagg acaaaacgaa aaacaacttt taaatgactt
    17101 agaaattgct aaaaatttag ccccgcaaca aatcacaacc tatcctttaa tgaaatcaaa
    17161 tcttaccaaa gataatatcg ctaaaagtct aggagtgagc attaaagata atgaatttac
    17221 ttattatcaa atcatacgag aattttttaa agactatacc caaaacaatg gttggagttt
    17281 ttctttagaa aaaaacaagc ttaatgacga atatgtcagt tctcatcatg aatacctagg
    17341 agtaggcagc ggagctttta gctttttaga tggggagctt ttaatcaatg catttaatct
    17401 aaatgattat gctaaattta tacaagaaaa acaaaatgct aatatagcca aagcttgttt
    17461 tgataaaaaa gaaattatca aatatgtctt tttaactgaa attttttcag ggaaaataga
    17521 aattgataaa tttaataaaa ctctaaattg caatctcgaa aaagaacttt tcatagaact
    17581 tttaggactt aaaacaagtg gtgccatcat aaaagatcaa aatgctttaa tcgcaactga
    17641 atttggtcaa tatctttttg tggttttaat gaaagatttt tacacaggaa tggatcttgt
    17701 gcgcgcagta tttagagatg ataagcgtct taaaaataaa gattatatcg atatcatgaa
    17761 agaaaatatt gatccgctta actccgctag tatggaattt aaagcggaga caaactaaaa
    17821 gggacgaaca accatcatta aagcgatgat aataaacatt atagttggaa attcattata
    17881 aattctaaaa tattttccac ttttagtaga agtatcattt gctaaagctt ttaaacaata
    17941 ataattatgt atatgaaaaa taatcaaaag tgtaacacag gtaagtttaa catgcataaa
    18001 acccgcacct accattaaaa cttccttatg agcatgcaac attaaacttc ctgtgattaa
    18061 agtcacaatc atggcaggag tttgtatata ataataaagc tttctttctt gaatttttac
    18121 aacctcgaca aaacctttat tgtctttatg ttcagcatga tacacaaaaa gacgaggtaa
    18181 ataaaaaaga cccgccatcc aagaaacaaa tgccaaataa tgcacccatt taatccaaaa
    18241 ataataatca ttaatccatt ctgtcatctt ttttcctttt tttaaatatt tcttgtatta
    18301 aaatcaaagc cacacttata tttatcatga catctgcaac attaaaaata gcaaaattaa
    18361 accatttatg ccaaaaaaac atatccacta cacctccatg tataaaacga tccaataaat
    18421 ttgaaacgcc ggcaccaagc atcattccaa aagctatgct atgagttttt aaaagtgttc
    18481 tttgccaaaa aagataaata aaaagcacgc caattaaagc aagatgtaaa tattttaaat
    18541 tatgttctaa aaaactcaac attgaaaaag ctacgcctgt atttagagca taagttaaat
    18601 ctaggtattc actctgccat ctaaatcctg ctaaagttaa ggattttacc cattgatcaa
    18661 gggcaaaaac caaaacaaag gcaccccaaa aataaaaaat aaatttaaaa gttttagcca
    18721 tttaaagctt tcttaaaaaa ctccacaaca tttttcattt ctttttctaa gagcttaata
    18781 tctctggctt ctagtaaaag tcttatcaaa ttttctgttc cagaatagcg aaataaggta
    18841 ttaatatttt t
//
LOCUS       DARGBD010000022        18814 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.022, whole genome shotgun sequence.
ACCESSION   DARGBD010000022 DARGBD010000000
VERSION     DARGBD010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18814
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.022"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            50..3562
                     /locus_tag="SFZ04_000670"
     CDS             50..3562
                     /locus_tag="SFZ04_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HEG8064972.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINPQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPSKNNLAIAVILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDV
                     DYWLIHRANKEGSVGMPLPGTAVRIVNPNNYENLKANEDGLILIGGHQVMVGYLNDKE
                     KTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(3570..4481)
                     /locus_tag="SFZ04_000671"
     CDS             complement(3570..4481)
                     /locus_tag="SFZ04_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEG8064973.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
     gene            complement(4678..4763)
                     /locus_tag="SFZ04_000672"
     tRNA            complement(4678..4763)
                     /locus_tag="SFZ04_000672"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4727..4729),aa:Leu,seq:gag)
     gene            complement(4799..5137)
                     /locus_tag="SFZ04_000673"
     CDS             complement(4799..5137)
                     /locus_tag="SFZ04_000673"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEG8064974.1"
                     /translation="MKKVLFLLLACAAVAFAAEINAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            5371..6705
                     /locus_tag="SFZ04_000674"
     CDS             5371..6705
                     /locus_tag="SFZ04_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8064975.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            6718..8058
                     /locus_tag="SFZ04_000675"
     CDS             6718..8058
                     /locus_tag="SFZ04_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8064976.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFILSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAISMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGV
                     IVCSIFVGFFMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMCYQIFV"
     gene            8090..9889
                     /locus_tag="SFZ04_000676"
     CDS             8090..9889
                     /locus_tag="SFZ04_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HEG8064977.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGNSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKHGLKHEITVTLMDLPSNCKGAHD
                     VPFYEKILKEILTAEIPFHSICFKDASGTSNPNKIYKTIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LRYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVTPD
                     ANIVELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEDIETSEENIFIAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEILAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            9902..11476
                     /gene="pckA"
                     /locus_tag="SFZ04_000677"
     CDS             9902..11476
                     /gene="pckA"
                     /locus_tag="SFZ04_000677"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEG8064978.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     YEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            11486..12868
                     /gene="argH"
                     /locus_tag="SFZ04_000678"
     CDS             11486..12868
                     /gene="argH"
                     /locus_tag="SFZ04_000678"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEG8064979.1"
                     /translation="MKNEMWSGRFSDASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYRTNRELSAEIL
                     GFKDIMLNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(12890..13993)
                     /gene="ychF"
                     /locus_tag="SFZ04_000679"
     CDS             complement(12890..13993)
                     /gene="ychF"
                     /locus_tag="SFZ04_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEG8064980.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(13990..15441)
                     /locus_tag="SFZ04_000680"
     CDS             complement(13990..15441)
                     /locus_tag="SFZ04_000680"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEG8064981.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNRA
                     SIHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAVMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGASGAGVRMCVNYLIQILRKAK"
     gene            complement(15438..16034)
                     /locus_tag="SFZ04_000681"
     CDS             complement(15438..16034)
                     /locus_tag="SFZ04_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8064982.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(16053..16601)
                     /gene="apt"
                     /locus_tag="SFZ04_000682"
     CDS             complement(16053..16601)
                     /gene="apt"
                     /locus_tag="SFZ04_000682"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEG8064983.1"
                     /translation="MIKLTQEEKKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLRHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(16598..16930)
                     /locus_tag="SFZ04_000683"
     CDS             complement(16598..16930)
                     /locus_tag="SFZ04_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8064984.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(16930..17367)
                     /gene="rpiB"
                     /locus_tag="SFZ04_000684"
     CDS             complement(16930..17367)
                     /gene="rpiB"
                     /locus_tag="SFZ04_000684"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEG8064985.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKINKRSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            17534..18088
                     /locus_tag="SFZ04_000685"
     CDS             17534..18088
                     /locus_tag="SFZ04_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HEG8064986.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            18104..>18814
                     /locus_tag="SFZ04_000686"
     CDS             18104..>18814
                     /locus_tag="SFZ04_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HEG8064987.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVG"
BASE COUNT         6286 a         2593 c         3174 g         6761 t
ORIGIN      
        1 actgataaat tcttttgtaa aataagcgct aattgacgag gtttaaataa tgcaaaaaaa
       61 atcttttttg aaaatttacg gattaattcc ttttttactt atagcattca tcaatgcttt
      121 tgtggatttg ggacataaaa ttattattca aaatactatt tataaggcct atgaaggaag
      181 tgagcagtta tttttaaatg ctatagttaa tgctttgatt ttacttcctt ttattcttat
      241 gctttctcct tcgggttttt tagcggataa atatccaaaa aatattgtaa tgaaaatttc
      301 agcaattttc aatgttatac tcactttaat aatttgcatt tgttactata gcggtgcttt
      361 ttggatggct tttattttta cttttataat gggagcacaa gcagcgattt attcaccaag
      421 taaatacggt tttattaaag aactcgtggg aaaagacttt cttgctatgg gtaatggtgt
      481 aattaatgcg gtaagcattg tggcaatctt agcgggaatg gctttatttt ctttaagctt
      541 tgaaagtctt tatagttcta tgtataatca aacagatgaa attttaaaag aagtagcgcc
      601 tttaggaatt gtgctaattt tattttcttg tatcgaagta ttttttgcgt ggcgtttacc
      661 taagctcaaa caaacaaata aagatttagt ttttaataaa aaagactata ttcgtggaaa
      721 acttctaata aataatctta agcttgtttt taaaaataaa actatttggc tttgcataat
      781 tggaatttca tttttttggg ctatatctca actttatctt gtcagctttc ctgtctttgc
      841 taaaaatgaa cttttcatag aaaatacttt ttatgtgcaa atttcactcg ctttttctgg
      901 tataggagtg attttaggct ctttagtagc tggtaaattt tcaaaaaatt atatagaact
      961 tggatttatt ccacttggtg cattgggtat gtttttaatg gcttttttaa tgccttattt
     1021 tataagttta ttaagttata gttttttatt tttctttttt ggattttgcg gagccctttt
     1081 tatcattcct ttaaatactt taatccaatt tcatgctaaa gaaaatgaat taggacaaat
     1141 tcttgcagga aataattttt ttcaaaatat tgccatgttg ggatttttgc tcttggcaac
     1201 tttatttgta aaatttgaaa tcaatgtgat ttatttgttt tattttattg ctttggtaac
     1261 ctttatagga agtttttaca tacttttaaa actccccttt tctttagtgc gtatactttt
     1321 aagcatagct tttttacaac gataccgttt acttgtggaa ggttttgaaa atataccaga
     1381 aaaaggtgga gctttacttt tgggtaatca tatttctttt attgattggg ctgttgtaca
     1441 aatggcaatt ccaagaaaaa tttattttgt tatggaaaga agtatttatt ctaaatggta
     1501 tattaaaatt tttcttgata aatttggtat tattcctgta tcaagtacag gaagtaagac
     1561 gagtttagaa ctgatagcaa agcatattaa agaaggtaat ttagtttgct tatttcctga
     1621 aggtacactt tcgcgacatg ggcaattaaa tgaatttaaa gcaggatttg aattagcttg
     1681 tgaatgttta agtgaagatg atggaaaaat tattcctttt tatataagag ggctttgggg
     1741 tagcgctttt tcaagaagtg atgaagaatt ttcagcaaga aaccgcactt taaataaaag
     1801 aaaaattgct atagcttttg gtaaagctat gcctttgcat tctaaaaaag atgaagttaa
     1861 agctaaagtt tttgaacttt cttttatggc ttggaaatca caatgcgaag ctatgcatac
     1921 tatagcaaga gcttggatag atacagctaa aaaaaatcta aatcaaatag ctattatcga
     1981 tacactagct ggagatattt cttatagaaa aatgttgact cttagtttat ttcttaattt
     2041 ttttattaaa agaaaatcca aagaattaaa cattaaccct cagcgtggaa gttacgctcc
     2101 taaagaggaa gctataggaa ttttactacc tgcttctttt gcaagttctt taaccaatct
     2161 atctgtttta atcgcagaaa aaattgcagt aaatcttaat ttcactgctg gagaaaaagc
     2221 tctaaaagca gctataaaaa atgcgcaaat ttcacaaatt tatacttcta aaactttttt
     2281 agaaaaatta gcaaataaag gtataaacct aaatttcgat acaaatatac atttaattta
     2341 ttttgaagat attgtagaag attttaaaat gcaaaaaact aaaattttta gcatgatgct
     2401 agcagttagt attataccta gttttatact caaaagcatc ttcactcctt caaaaaacaa
     2461 tcttgccatc gcagttattt tatttagtag tggaagtgaa ggttctccaa aaggtgttat
     2521 gctcaataac cgtaatattt taagcaatat agcacaaatt tctgatgtgc tttgcacaag
     2581 aaataatgat gtcattctct catctttacc accttttcat gcttttggac ttaccgtaac
     2641 tacatttttg cctttgcttg aaggtattaa aagcatcact ttttcagatc caaccgatgc
     2701 cttaggggtt gccaaagctg ttgctaaaaa taatgtcact attatgtgtg gaacttcaac
     2761 ctttttagga atttatgcaa gaaataaaaa gcttgatgct ttaatgtttg aaagtttaag
     2821 aatagttgta tcgggcgctg aaaaactaaa aaatgaagta agaactactt ttgaaatgaa
     2881 gtttaaaaaa agcatttttg aaggttacgg ggctacggaa accacgcctg tggcgagtgt
     2941 aaatttgcca aatcattttg atgtggatta ttggcttata catcgtgcca ataaagaagg
     3001 aagcgtagga atgcctctac ctggaactgc ggtacgtatt gttaatccaa ataattatga
     3061 aaatttaaaa gcaaatgaag atggactcat acttataggc ggtcatcaag ttatggtagg
     3121 ctatcttaat gacaaagaaa aaaccgatga agtggttaaa gaaattgatg gcataagatg
     3181 gtacaacacg ggagataagg gacatttgga tgaagatggt tttttatata ttgtcgatcg
     3241 ttattctcgc tttgcaaaaa ttggcggaga gatgatttct ttgggtgcaa tagaagaaga
     3301 aattgccaaa tttatagaca ctgaagtggt taaattttgt gccacatctt tagaagatga
     3361 gaaaaaaggg gaacaaattg ttttactcat agaatgcaat aatgaaattt ttgaaggagt
     3421 atgtgaggct ataaaaaatt ctaatatacc tacacttttt aaacctagat attattttca
     3481 aatagaaaaa attcccctcc taggttcagg aaaagttgat cttaaaaaag ttaaagaatt
     3541 agctaaaaat ttagccatat aatttgagct tataacaaag tccaaattaa aattggcata
     3601 gaaacaaaag caaaaagaac tccaaaggct acagcactta cggctaaatt actatctagt
     3661 ttagctttca ttaccatagc tcctgctaaa gtcatagtag gagctgcact ttctataata
     3721 gcaacgatgg tagaatcttt taattccaaa ttaaatattt ttaaacaaaa tacaaaaaat
     3781 aaaggagcta aaatcatttt agcaaagatg acaactattg taggtttgta agaggtttta
     3841 atcgccataa agccaagtcc taaacctata gcaaaaagtg caacaggggt tgcagaggca
     3901 ccaaataaac gaataggaga gaaaataaat tcaggtaaag taatcaattt acacaaaaaa
     3961 ccaaaaagca aagctaaaaa aggtggaaaa ctaagaattt ttttaacatt agcaagcaaa
     4021 ctgacttttt ctccatttcc caaagaaagt ataaaaggtc caaaaagtga tataggtaaa
     4081 gttgtggcta aagcatcgta aaatataact tcagcgctaa attgtgggtc attaaatata
     4141 ccagcaacaa taggcatacc cacaaatata gtatttccaa aacaagaaag caaaaacata
     4201 ctgactaaag ttactttaga aaaatgaaaa acttttccaa taagaatagc aaaaaaagct
     4261 gctagtatac agctaaacaa tccaataaaa ataaaaataa tcaatgaaaa atcaaaattt
     4321 aaatgatatg ctttatcgaa aatcaaacaa ggtaaagcaa aaataatagc aaaatctaaa
     4381 aaagtcctag cttgtttttg cttcaaaacg ccaattcttt tggcaaaata tccgcctgca
     4441 agtaaaataa aaattgtaaa taatggtata aaaacaaaca ttgagtaatc ctttttaagg
     4501 gatggttttt gaaaacggat agaattatat tctttatact taaaaaaaat cttaatattt
     4561 tttaagtttt ttaaaaaaac caatattttt tattttttgt aactttaaga aattgtaagt
     4621 tgaaatttga ttttgaatag ttagtatttt aagttgaatg attataattt taaataatgg
     4681 tgcggttagc gagatttgaa ctcgcacacg cggagcgcac caccccctca agatggcgtg
     4741 tctaccaatt ccaccataac cgcatagaaa aaagcccaaa aaagggcttt aataagtttt
     4801 attgtaaaac tataaaagga tttgcgtaaa gtgctattag cgcgataaca agagcataga
     4861 taacttgtgc ttcgatcatc gctaaagcga taaacatagt tgtcattaat tttggcccaa
     4921 gaccagggtt tctagctgtt cctgcaattg ttgccgctgc agtattaccc ataccgatag
     4981 caccaccaag tgctgcaaca ccaagaccta ggcctgctgc aagaactgaa aatgctttaa
     5041 tccatacatt aatagcttct tgctctactg gagcattaat ttcagctgca aaagctactg
     5101 ctgcacatgc taataataaa aaaagaactt ttttcattat cttaaccttt ctataaaaaa
     5161 aatttttttc aatttttaaa tcagttcggc ttgcgtatcc ctacttaaga cttaaaaata
     5221 aatccgaatt ataaccaaag gtatctttat ttttattgaa atttacaaaa attcacattt
     5281 ttgatttaaa tttgattgtt ttcaataaag cttaaaagtt tttttgcttt aataatattt
     5341 taaaataatt tttaagttaa ggttgtaaca ttgagttcta aattttcaaa aataggtttc
     5401 attttagcgg tagcaggttc agcagtgggt ttgggtaatg cttggaaatt tccaacacta
     5461 gtaggtcaaa gtggtggatc tgcttttatc ttgctttata taattcttac tttgggtgta
     5521 ggttttgtga tatttttagc tgagcttagc ataggaaaaa ttagtgaaaa agatccggtt
     5581 aatgcctatg aaaagttagc accttcaaat aaaaaagctt ggtcttatgt tggttttact
     5641 atggtggggg cgattttaat agtttctttt tataccttgg tgattggctg gatagttaaa
     5701 tatgtgtttt taagtatcac tggaaatttg cctatggatc tagaagtaag taaagcacag
     5761 tttggatttt ttataagtga ggatttttta agtcagttta tttgttttac tttggttttt
     5821 ttatgtgttt tttatattgt ttctaaaggt gttaagaatg ggattgaaaa gttaaatgtt
     5881 tggatgatgc cttcattgtt tattttactt attttgatgc ttgtttatgc tattagcaaa
     5941 gatggtttta taatggcggt taaatttctt tttgtacctg atttttccaa aatcaacact
     6001 tcaaacgttc ttgaagcctt aggacttgct ttttttagtc tttctttggg cgttggaacg
     6061 attattactt attctgctag tctgcctgat aaaactaatt ttattaccag tactttaaat
     6121 attattttta tcaatctttt agttggttta ttaatgggtt tggttgtttt tacttttatc
     6181 tttgaatttg gttacaatcc taatcagcaa ggaccaggac ttgtttttat ttccttagct
     6241 actttatttg aaaaaattgg agtgattggt tgtatttttg gagcagcgtt ttttatttct
     6301 ttaatctttg ctggtattac ttcagctgtt tcaatgatag agcctttcac tttttacctt
     6361 attaatactt ttggtatgag ccgtaaaaaa gctttgattt taataggaat tgttgtttat
     6421 attttaggaa tgttgtgtat tttatcttct ttaaaaagta ctcagtttgg attttttgga
     6481 atgagttttt ttgatttgct tgatagtgtt tcaagcaagg ttattatgcc tttaggtgga
     6541 attttggcag ctatttttgt gggatttgtg atgaaaaaag aagctttaaa aattttattt
     6601 aaaccttata tgaggggtat attttttgaa ctttggtatg tgtttttgag atttatttcc
     6661 cctttggctg ttgttatagt tatgatagcc gcttttttaa agtgagtttg aaaaataatg
     6721 agaacatatt tttcaaaaat cggttttgta ttggctgttg ctggtggagc cgttggttta
     6781 ggtaatgctt ggaaatttcc aactttaagc gcagaaaatg gtggttttgt ttttgtgctt
     6841 ttatatttgt tttttacttt aactatagga tttagtattt ttttggctga agtggctatg
     6901 ggacgtttaa gtaaaagtga tcttgcaaat gcttattcaa atcttgccat aaaatatggt
     6961 aatagatggc gatatggcgg cgtttttatg ttaggtggta tttttatcct ctctttttat
     7021 ctagttatca tgggatgggt tttaaaatat actgtagtga gtctttatta tcttcctaaa
     7081 actttagatg aagcagcaag taattttcag aatttaatta ctacaaattt gacaagttct
     7141 gtttttttct tcactttatc tttttttctt actttattga tagtatctaa aggtttaatc
     7201 aaagggattg aaaaattaaa cgttgttata atgcctagct tatttttaat gcttgttttt
     7261 atgttgtttt attgcatggg atttaagcaa ggttttgcaa atgctttttc ttatttattt
     7321 tatcccgatt tttcacattt taaattcagc tctattgccg aagctttagg gcttgcattt
     7381 tttaccttat gcttgggaat aggttgtata gttacatatt catcggcctt ggataaaaaa
     7441 acaaatttta taaaaagttc agtgtatatt gttttgatta atttattgat ttcttttatt
     7501 atgggactta ttgtttttac ttttatcttt gaatttggag ccgatccgca tactcaagga
     7561 gcaggaattg tttttgtatc cttgatgagt ttgtttaatc aacttggagc tttaggctat
     7621 atttttgcat tttgtttttt cttagcactt ttttttgctg gtattacttc agctatttca
     7681 atgatagagc ctttaacttt ttatatgatt aataactatc aaatttctcg tgttaaagct
     7741 ctatttttaa taggtttatt tgtttttgtt tttggaattt gttgtatctt gtcattaaat
     7801 ttaaattttt tttctatgtt tagttttttt ggcaaagatt tttttacttt attagataaa
     7861 ttaacttcaa attttttact tccacttggt gttatagtat gctctatatt tgtaggtttt
     7921 tttatgaata aaaaacaaat ttataaaatt ttttctaaat ttataagtcg aaaaattttc
     7981 ttaatttggt tgttttttat tcgttttata tcgcctatag caataatttt ggtaatgtgt
     8041 tatcaaattt ttgtataata atgaaaaaat atttttttaa ggaaaaataa tggctaaaaa
     8101 attcatcgat gtaatggata caagctttag ggacggtttt cagtctgttt atggagctag
     8161 ggttttaatg gatgattttt ttcctgcagt agaagcagca aaagaagcgg gtattactca
     8221 ttttgaattt ggtggtggtg ctagatttca aagcttgtat ttttatctta atgaagatgc
     8281 ttttaccatg atggatagat ttagggctat tgtaggaaaa gatgctaatc ttcaaacttt
     8341 agcaagagga gtcaataccg ttactttaga tactggaaat agtgaactta ttgatttgca
     8401 tgcaaaactt tttgcaaaac acggtactac aacgataaga aattttgatg cccttaatga
     8461 tgtaaataat ttaaaattta gtggtgaatg tatagtaaaa catgggttaa agcatgaaat
     8521 tactgttact ttaatggatt taccgtcaaa ttgcaaaggt gctcatgatg tgccttttta
     8581 tgaaaaaatt ttaaaagaaa ttttaacagc agaaattcct tttcatagta tttgtttcaa
     8641 agatgcaagt ggaacttcta atccaaataa aatttataaa accattaaaa tggctagaaa
     8701 aattttacct caagatacac atattagact tcatacgcat gaaaccgcag gggtgagtat
     8761 agcttgctat cttgcagcgc ttgaagcagg ggttgatggt attgatttgg ctgcagctcc
     8821 tgtaagtggt ggaacttctc agcctgatat tttaaccatg atgcatgctt taaaaggcaa
     8881 agattatgat ttaggtggac ttgaagaaga aaaaatttta agatacgaag aagttttaaa
     8941 agattgttta aaagagtatt ttttaccacc tgaagctact atggtaaatc cacttattcc
     9001 tttttctcct atgccaggag gagctttaac agcaaataca caaatgatga gggataataa
     9061 tattttagat aaatttccac aggtcattca tgctatgaga gaagttgtgg aaaaaggtgg
     9121 atttggtact tcggttactc cagtttctca attttatttt caacaagcat ttaataatgt
     9181 tatgtttggg ccttggaaaa aaatcgcaga aggttatgga aaaatggtac ttggttattt
     9241 tggaaaaact ccagttacac ccgatgcaaa cattgttgaa cttgcttcaa aacaacttaa
     9301 tttagaaccc actacagagc ttgctattaa tatagccgat aaagatgaga gtaaaagcat
     9361 agcttatact aaaaccttgc ttgaaaaaga ggatatagaa acgagtgaag aaaatatatt
     9421 tattgcagca gcttgtaaag aaaaaggtat agcattttta aaaggagagg caaaggtaaa
     9481 tatacgcaaa ttagctagca tgccaaagcc tatgagtgta gatgaaaaca aatttactgt
     9541 agctgtaaat ggtaataaat atcatgtgga agtgagttat ggttttgata aagatgttaa
     9601 tgttaagagt gtaaaaaaag tagaagaaaa taaaaatatt atttcttcaa attcaacaag
     9661 ttctgtcgat gctgaaaatg aaattttagc aggtatttca ggtaatgtct ttaaaattta
     9721 tgttaacgaa ggcgaggaag taaaatcagg tcaagctatc atggttttag aagcaatgaa
     9781 gatggagatt gaggttaatg ccccaaaaga tggaattatt ttagagcttt gtattaaaat
     9841 aggtgatact gttaatgaag gcgaagtatt agctatttac aagaattaaa gtgagggaaa
     9901 aatgaaaaaa tttgataagt taggtttgga taatataaag gaaatttttc ataatttaag
     9961 ttatgatgaa ttaaatgctc atgaaaaagc aaataatgaa ggtttaagca cggataatga
    10021 tactttttgt gtagatacag ggatttttac aggtagaagt cctaaagata aatattttgt
    10081 aaaacaagat ccatctagta aatatatagc ttggggaaag gtaaatcagc ctattacaaa
    10141 agaattattt gataaacttt taactaaagc aaagcaagaa ttaagcggaa agaaaattta
    10201 tgttcaagat gttttttgcg gtgcttcttt gcaaagtcgc aaagcagtaa gatttgttac
    10261 tgaaattgca tggcaagcgc attttgttaa aaatatgttt attcgcccaa gtcaagagga
    10321 acttgagaat tttaaagcag attttattgt ttataatgct tgcaaatgca tcaatgaaga
    10381 ttacaaacaa gatggtttaa attcagaggt ttttgtgatc tttaatgttg aagaaaatat
    10441 agcggttatt ggtggaactt ggtatggtgg agaaatgaaa aaaggtattt tttctatgat
    10501 gaattattgg ttgccactag aaaataaact ttctatgcat tgtagtgcaa atgtcggaga
    10561 aaaagacgat gtggcacttt tctttggact tagcggtaca ggaaaaacta cgctttcaac
    10621 cgatccaaaa agaagactca taggtgatga tgagcatggc tgggatgatg aaggtgtgtt
    10681 taattttgag ggcggttgct atgcaaaaac aatcaatctt gatcctgaat atgagcctga
    10741 aatttatgga gccattaaaa gaaatgcact tttagaaaat gtagttttaa gagctgataa
    10801 gagtgttgat tatgctgatg cctcaaaaac agaaaacacg agagtttctt atcctataga
    10861 gcatattgaa aatcatgagc ctagtctaaa agcagggcat ccaaaaaata ttatattttt
    10921 aagtgcagat gcttttggaa ttttaccccc ggtgagcaaa ctaagcaaag agcaggctat
    10981 gtattatttt ttaagtggct atacagcaaa agtagctgga actgagcgcg gtataacaga
    11041 gcctcaagca actttttcag cttgttttgg agaacctttt atgcctttac atccaacggt
    11101 ttatgcgaga ttgcttggtg aaaagattga aaaacatgaa gttaatgttt atcttgttaa
    11161 tacgggttgg agtggcggaa gctacggtgt gggtaaaaga atgagcatta aggctactag
    11221 ggcttgcatt aatgctattc tagatggaag tattacaaaa tgcgaatttg aaaattttga
    11281 agtgtttgat ttagctattc caaaagcttt agaaggtgta gaaagtgtac ttttaaatcc
    11341 tataaatact tggttagata aaaatgctta tattgcaaca agagataaat tagcacatat
    11401 gtttatacaa aattttaaac gttatgaaga tgtcaaagaa ggcattgaat ttagcaaatt
    11461 tggaccaaaa atttaaggca tttaaatgaa aaatgaaatg tggtcaggac gttttagtga
    11521 tgcaagtgat gagcttttaa aagaatttaa tgcaagttta aatgtagata aaactttgtt
    11581 caatgaagat atacaaggtt ctatagcaca cgctacaatg cttgaaagtt gtggtatttt
    11641 aaaaaaagaa gaattagatg ctattataaa aggtttagag caggttagaa gtgaaataga
    11701 gcaaggtaaa tttatttttg atattaaaga tgaagatatt catatggccg tagaaaagcg
    11761 tttaagcgag attataggta gtgaaattgg tggaagactt catactgcaa gaagtagaaa
    11821 tgatcaagtg gctactgatt ttaaactttt tgtcaaaaaa tctcatattg aacttataaa
    11881 gcttttaaaa gaattgattc aaaccatgct cgaacatgct aaagtgcata aaaaaactat
    11941 tatgccaagt tttacacatt tacagcacgc tcagcctgtg agtttttctt tttatatttt
    12001 agcttatgct tttatgttaa tgcgagatat taagcgttta caaaatagcc tagaactcgc
    12061 agacttttcg ccacttggat cttgtgcatg tgcaggaaca agctatagaa ccaatcgtga
    12121 gttgagtgct gaaattttag gatttaaaga tattatgcta aatgctatgg atggagtgag
    12181 tgatagggat tttgctcttg atttgcttta tgatatagca gttattttta cacacacatc
    12241 aagactttgc gaagaaatga tcttattttc aagttcggag ttttctttta taactataag
    12301 tgatagcttt tcaacaggaa gttctattat gcctcagaaa aaaaatcctg atgtttgtga
    12361 gcttatacgt ggaaaaacag ggcgtgttta tggaaatttg atttctcttt taactataat
    12421 gaaagcttta cctttagcct ataataaaga tatgcaagaa gataaagaag ggatttttga
    12481 tagtgtaaaa accgctaaag atagcttaat catcttaaat gcaatgctaa aagaaataca
    12541 aattaataaa gaaaatatgc ttaatgcttg taaaaaaggt catttattgg ctaccgattt
    12601 ggcagattat ttggtgcgtg aaaaaaatat tccttttaga aaagcacatt ttatagtggg
    12661 aaatgttgtt gcacaagctg aagcacaagg tattgatata agtgaaatta aagatctttc
    12721 aaaaatagat cctgtatttg atgaaaaagc tatggaactt ttaaattttg aattttcttt
    12781 aaattctaag caaagtgaag gctcaagttc tattgcaagc gtagaaaagc aaattcaaat
    12841 tttggaaggt tttattcaaa atttataaat attgtttagg ctattttgcc taaacattga
    12901 atctaaagtg cattacatcg ccgtctaaaa cgatatagtc ttttccttca aggcgtagct
    12961 ttcctgcttc tttggcgcca ttttcgcctt tgtattggat atagtcttca taggaaataa
    13021 cttcagcttt tataaagcct ttttcaaagt cattatgaat cacgcttgct gcttttggtg
    13081 ctttccagcc ttttttgatt gtccaagaac gcacttcaac tacaccagcg gtaaaataac
    13141 tgatcagtcc aagcttagca aaagcagtgc gtatgatttg atcaagaccg ctttcgttaa
    13201 ctcctagaga gcttaaaaat tcatgacttt cttcatcgct taatcctact aattcttctt
    13261 cgatttttgc acaaagcttg ataacttcat gatcattttt tttagcatat tcttttaaag
    13321 cttttacata atcattatct tcactaatac cattttcatc aacatttgca ccataaatca
    13381 cctctttagc agaaagcagt cttaattcct tgattagggc ttgataaatt tcgctttcct
    13441 tttcaggata agaacttgca gctaagcctt tgtttaaatg atcaagtaag gaatttgcaa
    13501 gttcgagact ttctttggca cccttttgat tggctttggc ttctttggtg agtttttcta
    13561 tttttttact cagttgctca atatctgcta aaataagctc tgtattgata atttctacat
    13621 cacgtaaagg atcaactcca ccttcaacat gggtaatatt ttcttcatca aaacaacgta
    13681 ctatatgcaa aataacctca gtttcacgta tatttgaaag aaatttattt cccaagcctt
    13741 cgcctttact tgcgccttta acaagtccag cgatatctac aaattctatt aaagaatgca
    13801 taattctttc aggttttact attttagcaa gttcattaag tcttaaatca ggaacttcaa
    13861 ccatggcttt attaggctct atggtgcaga aaggatagtt tgcactttgg gcattttgtg
    13921 ctttagttaa agcattaaaa gttgttgatt tgccaacatt tggaagtcct actataccta
    13981 cgcttaaact catttagctt tccttaaaat ttgaattaaa taattaacac acattctaac
    14041 tccagctcca cttgcgccaa aactagaata tccccaagat ttttctgtat aagcaggtcc
    14101 tgctatgtca agatgtagcc atttatcttt atattcttta cgaataaatt tatctaaaaa
    14161 taaccctgcg gtaattgcac ctccgtagcg actagaggca gtattactaa catcggcaat
    14221 atttgatttt ataagttctc ttaagtgagg gttgaaatgt aagattgtgg tatattctcc
    14281 gcttttttta gagcttagat aaaaatcatt ttgcaattcc tcattatttc ccataatagc
    14341 acttgtaaat tctccaagtc ctacaacaca agctccagta agagttgcca tatcgataag
    14401 taaatcaggt tttaaatcct gtgcaaaaga aagacaatca gctaaaacca agcgtccttc
    14461 tgcatctgta tttcttacct ctatgcttac accttcacga ctgattaaca catcatcagg
    14521 cttataagca ttgccgccta tcatattttc agttgcgccc aaaatgcaat gcacttctaa
    14581 atctaaagca agttcagcta cggcttttat gattcccatt actgctgctg caccgctttt
    14641 atcagctttc attgtaagca taaaatcagc tggttttaag cttaatccac cgctatcgta
    14701 agttaagcct tttccaacaa atacaacacg tttttttgca tttttggctt tatagcttag
    14761 atgaatgagg cgtggtgggt gtatcgaggc gcgatttacc gctaaaaagg cattcatttt
    14821 ttctttggct aagaattttt catcataaat tttacaaata atgtttttat tttctttagc
    14881 taaattttgc gcatcttctg ccatttttaa aggggtgtaa atttcaggaa tttcattgac
    14941 tatattttta gtaaaatttg tagcattagc taaaatttct ccacgctcta aacctatctt
    15001 agcttcatct ttattaaatt tcttaccatt taattcttcg cttgaaataa taaatttttc
    15061 caaagtactt gtttttttct cgcttttata tttgtcaaat ttataagctc caaaaagtac
    15121 gccttcaact aaagatgcaa aacttctaac tacacaatct cctattatgc taggaagttt
    15181 tacgctttta atattaagtt tctcaagagt tttatatgct gtgcaaagac ttaatcttat
    15241 atcctcataa gcaagacttt taagctctaa ataaagcttt ttattgttta agtctaataa
    15301 tgcaccttcg cctttgtaat tattaagttt aaaaaaatct ttttctttgt taaaaatttt
    15361 taaattttta tcctgtataa aaacaagttc aaagtctgct tttatagcat ctagtttttt
    15421 atcgtttaat tcaaatttca tgattttttc cttttatctt taagtatagc tttttccatt
    15481 tgtttaaaac caaataataa aagggataaa aaagctataa taataatggc tgcataatac
    15541 caatgttctt cagcccaagt caccatcttc caaatttgtt ctccaaaata ccaagctaaa
    15601 agtatagtga ttgatgccca aacccaagca ctaaaaagat tgataatagc aaattttttt
    15661 gcactataac gcgtgattcc tatactcata ggtataatgg ttctaaaacc atacatatag
    15721 cgttgtataa aaataatagg ccaaccaaaa cgttgtaaaa gtaggtgtgc tactgcaaat
    15781 ttacgccttt gagtttttaa ttttttttgt atgtagcgtt tattatatct tcctatatag
    15841 aaataaattt gatcacctac aaaaccacca agtcctgcta taaatataac aaaacctaaa
    15901 tttacatgtc cttgatgagc aaaaatacct gctaaaatta aagctaactc tccttctaaa
    15961 atgcaccata aaaaaataat aatataagct agatctttgt attggtaaag taaatttttt
    16021 aaaaattctt ccatttgtac ctttctatag ttttaaattt ctaaaacact ataaactgaa
    16081 gtaagttttt caagtttatt tgctccattt aaatctttaa gattcattaa aaaacaagct
    16141 tcaacacatt tagctccagc tttttgaatg agttcatatg aagctatagc tgttccgcca
    16201 gttgctatta aatcatctac aagtaaaact cttgcatttt gaatattttt aaatgcatct
    16261 ttatgaagtt ctactttatc gctgccatat tcaagatcgt attcgcagct aaaggtttca
    16321 aaagggagtt ttccaggttt tctaataggc acaaaaggaa gattaagttt tgcacaaatc
    16381 atagatgcaa agataaatcc tctgctttct gttcctgcta tgaagtctag attgtaatct
    16441 ttgtagcgtt cttttaaatg tctaagtaga aaatttaaag cttctttgtt atttagtaga
    16501 gtggtgatat ctctaaaaat aattcctttt tttggaaaat caggaataat cctaatgcta
    16561 tcaagcagat attttttttc ttcttgtgtt agttttatca taataatgcc tcgatttttg
    16621 cttctaattc tttaattctt tgtcttagtt tgtcattttc caagcgatat tgagaatttc
    16681 tggttcttaa agatgtaagg tctgctttga ttttattaag ctcttctgtg agtatatcta
    16741 tatttccaag gcttctttga agttgaattt gtagttttct aatgacaatc tcagtatcat
    16801 caagattgtt tttgataaaa tcttttgatg ttttttcttt attaagtaga gttttatagt
    16861 aaaacaacat tacaataaga tagatagttg cacaaatcaa tatagttaaa acaagccagt
    16921 ttgtaaacat tatattttta cctcaatttt ttgaattctt tgcatatgtc tcccttcttc
    16981 aaaaggagtt tgaatgaatt tttctataat atctatagct aattcaaccc caattaatct
    17041 tccgcctaat gccaaaacat tggcatcatt atgccttctt gcaagttctg cacttaagct
    17101 ttcgtggcat aatgcacaac gaatgttttt atgacgattt gctgcaatag aaattccaat
    17161 tccacttcca caaataagaa tgccaaagct ccgtttgttt attttttcgg caagtaaatg
    17221 cgcataatca ggataatcgc agcttgcgca agtgtttgtt cctaaatcgt taaaaattat
    17281 atttttttct tttaaaaata cgcaaatttt ttcttttaat tcaaaaccag catgatcact
    17341 agcaatataa attttttccc taagcattgg tttcctaaat tactatataa aataagataa
    17401 aaacctaatc ttatcatatt aaatcataaa aacagctttt ctttgtttta aaaataagct
    17461 ttatttttct ttatatatgt tagaatcatg tgacaagaaa aataaaattt caataaatta
    17521 agaggagaag aaagtgaagc tcatactcat aggatcttca acaggtggtc ctaatcagct
    17581 taaatttctt ttaaaggata ttgatgtaaa aaatacttgt gtagttatag ctcagcacat
    17641 gagtgccagt tttattccat cttttgtggg gcaatttaat aaagaagctt ttagtgaagt
    17701 gtgcttattg aacgataaag agatattaag caataaaatt tatatttgcc ctaaaaatac
    17761 tattttatct ggaaatttaa atattgtagc cgcttggcaa gatgtggctt caagctttaa
    17821 accgagtgtg gatttacttt ttcattccgc tgtttctttg gcaaaaacaa ataaaatact
    17881 tgctattatt ttaacgggca tgggagatga tggcgcaaaa ggtttatttg agctttataa
    17941 aacaggagtt agatgtttat gtgagaatga agcagatagc gtcgtttatg gtatgccaaa
    18001 aagagcaaaa gatatgaatc cgcatttaaa acctatgagc ttaaaagaaa ttaaaaaaga
    18061 aattgtaaat tttattgatc aggattaata aaaggaaaat tgcatggaaa aaaaaataac
    18121 tcctagcgaa ttggaactta atgaatttat aaaaattatc aacgaaatga gtggtattga
    18181 tttaaccgat aaaaaaaata tactagcttt aaagttgaat aaatttcttg aaggaactaa
    18241 tactaaaaat ttttccgaat ttttgggaaa attaaaaagc aatagacaac ttaaacaaga
    18301 aactttagat tttgtaacca taggcgaaac ttatttttta agagaattgg ctcaattgaa
    18361 agaaataatt tattatgcca aaagcttaga aaagagagta aatatcctaa gcgccccttg
    18421 ttcaagtgga gaagaagtat attctttggc attattggct gcacagaatt ttattaaaga
    18481 tatgtatatt ttaggcgttg atattaattc aagtgtgatt gaaaaagcaa aacttggaaa
    18541 atatcaagga agaactttac agcgattgag cgagagtgaa aaaagaaggt tttttttaga
    18601 aagcgaagat aaattttata ctattaataa aaatgagctt tgtacttgta aatttgaact
    18661 ttgcaatgtt tttgaagaaa aattttcaag attgggaaaa tttgatatta tagcttctag
    18721 aaatatgatt atttattttg atcatgaatc aaaactaaaa cttatggaga gatttcatag
    18781 aattttaaat gataaaggaa ggctttatgt tggc
//
LOCUS       DARGBD010000023        18299 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.023, whole genome shotgun sequence.
ACCESSION   DARGBD010000023 DARGBD010000000
VERSION     DARGBD010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18299
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.023"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(53..1855)
                     /locus_tag="SFZ04_000687"
     CDS             complement(53..1855)
                     /locus_tag="SFZ04_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEG8064988.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFIPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(1852..2775)
                     /gene="hemC"
                     /locus_tag="SFZ04_000688"
     CDS             complement(1852..2775)
                     /gene="hemC"
                     /locus_tag="SFZ04_000688"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEG8064989.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESILRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDKICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(2772..3161)
                     /locus_tag="SFZ04_000689"
     CDS             complement(2772..3161)
                     /locus_tag="SFZ04_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HEG8064990.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(3158..4867)
                     /locus_tag="SFZ04_000690"
     CDS             complement(3158..4867)
                     /locus_tag="SFZ04_000690"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEG8064991.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEIKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVVGKGLEKNEIELIQREGLIKELIKTDELMEILKK
                     KVL"
     gene            complement(4851..6149)
                     /locus_tag="SFZ04_000691"
     CDS             complement(4851..6149)
                     /locus_tag="SFZ04_000691"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEG8064992.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(6149..7042)
                     /locus_tag="SFZ04_000692"
     CDS             complement(6149..7042)
                     /locus_tag="SFZ04_000692"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HEG8064993.1"
                     /translation="MQKIDELIKQFLEELGYEPILNMLSNVKPGKKLRSKLLLAIADE
                     SEIAFKICTAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(7056..7592)
                     /locus_tag="SFZ04_000693"
     CDS             complement(7056..7592)
                     /locus_tag="SFZ04_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HEG8064994.1"
                     /translation="MFKISPCLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(7595..7858)
                     /locus_tag="SFZ04_000694"
     CDS             complement(7595..7858)
                     /locus_tag="SFZ04_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HEG8064995.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGNLGALEKVFEEFFADHIAMVE
                     LLEKQGLTEMDVKNFILENGDFIEERQNDIYIELGAKILGHEG"
     gene            complement(7997..8554)
                     /locus_tag="SFZ04_000695"
     CDS             complement(7997..8554)
                     /locus_tag="SFZ04_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEG8064996.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(8551..9396)
                     /locus_tag="SFZ04_000696"
     CDS             complement(8551..9396)
                     /locus_tag="SFZ04_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEG8064997.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(9397..10521)
                     /locus_tag="SFZ04_000697"
     CDS             complement(9397..10521)
                     /locus_tag="SFZ04_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HEG8064998.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(10530..10841)
                     /locus_tag="SFZ04_000698"
     CDS             complement(10530..10841)
                     /locus_tag="SFZ04_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEG8064999.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVYPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(10855..11724)
                     /gene="sucD"
                     /locus_tag="SFZ04_000699"
     CDS             complement(10855..11724)
                     /gene="sucD"
                     /locus_tag="SFZ04_000699"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEG8065000.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(11734..12897)
                     /gene="sucC"
                     /locus_tag="SFZ04_000700"
     CDS             complement(11734..12897)
                     /gene="sucC"
                     /locus_tag="SFZ04_000700"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEG8065001.1"
                     /translation="MNIHEYQAKAIFVDNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDTTEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(12898..13800)
                     /locus_tag="SFZ04_000701"
     CDS             complement(12898..13800)
                     /locus_tag="SFZ04_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG8065002.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSRVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(13797..16001)
                     /locus_tag="SFZ04_000702"
     CDS             complement(13797..16001)
                     /locus_tag="SFZ04_000702"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEG8065003.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(16118..>18299)
                     /locus_tag="SFZ04_000703"
     CDS             complement(16118..>18299)
                     /locus_tag="SFZ04_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HEG8065004.1"
                     /translation="TLQRQNKELIADIKKLLLKDYDLSIDGNLSINTKSEFYYFQGRA
                     SGELLDFNASISYKDKNLAYKIEDLNIRNITEIFKRVNKRIELPQSLNLWVAYRAKGE
                     FYHLDYLQGFIDFTKDNYYLDNISASGYVNNVKVRLDDKMNAIEIPKLDLNLNKQKLD
                     FVFNKAFYNGADLSSSKVYLYDLFDEKKVGIYLRIKSDNLKFDEKLAKALEDYHFSLP
                     FYQKSGKIKSDLELKIDFHDKGEISYSGILALENASISLADFNIIKAFVKLNQNDLNI
                     ENASVKNGFLEADFNAKFDLQKQQGNFNTQISRLYFDNGELLDLKNQNVEVKLDYSQN
                     VNISIPQWNLILNFKDGLEANLNNPKILFSFSPLLKKLGFIDAKNVYYKTLNFEDFNA
                     SVNDAYFKNNLLINGQTPYENDSFDIVKNKGIMEIHTQSDTASAKISSDNKEIHLKNL
                     SYIYRKHSNSSNSTFDIATNTQNISFGGANVALILADSNKTLAFDRVEADLKGNALDL
                     KGSRGNAKFDLYYSSNDLNLNVSNIDDNYLNEFLQKQAVQDGVFNLSIKGSGLEYFDG
                     QIDFKNTYVKDLKGINQLISFIDTVPSLLMFKSPTFNQKGLSLHDGKIIFNRKKDLLS
                     VSAINLNGDSVDIYGLGSANLRLNTVDFSLELKTLKSASEAISKVPILNYVILGKNQE
                     ISTNLKIDGSIDDPKFHTEILTDTLKTPFNLIKNIIQLPANLLN"
BASE COUNT         5969 a         3597 c         2136 g         6597 t
ORIGIN      
        1 aaaaataata agcaaaaact gtgccaaaat tttaaaataa atctcaatta tcttaaaaaa
       61 tttcaaattt attaaaaaga tctggattat tttctaaaat attacgcaag atcaaatctt
      121 ctatcacgct tttagtgcaa tctgtttgct taggccaagc tcttaaataa ccctcagctt
      181 cacctttagc acttgcatct actccaagtc tttcttcttt gataaaaata tctcttttag
      241 catctatatt atttaccaca cgccaaacaa gcatataaga attttcaagc ttattttcag
      301 catctaaaaa tactaaaatc ctaaaatgtt ttttaaattc taaaagtttg tcaaaacttt
      361 gttcaatttt ttctttttta tcaagcaaaa tacaaactat aggactttta ctttctttat
      421 aaaattgctt taaatttaaa agttctacct tagttttaaa aagttctagt aatttttcat
      481 cttctaaaat ttcaagctct tcaacttgta tttcttcgca agcatcaagt cctgctttac
      541 ccccaaaaca agaattaggt gaagcatgat ctaattgatc acaaattcct tctgaaatta
      601 aaattttctt tgtattaaaa cgatctaaca tataaggaat taaagcatca taatctttca
      661 aagaaggtgc atttttatcc acaaaaattg catgcttaac aaaactcatt tgccctactc
      721 cccaaaatgc atgcataatt tgttgcgcat gagcgggata ttttgcatcg atttttgcta
      781 agataagatt atgaaagacc ccattttcag gcatattata atcaattaaa tcaggtactg
      841 aagtttgaag caagggtaaa aaaattcttt cggtaccaag ccccatgatc ttatcttcta
      901 aaggaggctt tcctacaacc gttgcttgat agatcgcatc ttttttagca taaatttttt
      961 ctactttcat cacaggaaaa agttcagcag gagtataaaa acccgtatga tctccaaaag
     1021 gaccttcgat tttaaactct tctaaatcca cataaccttc aataaccaca tcactatcat
     1081 aaggtataaa aataccattt tcacaaggag taatttttgc aggagttttt ttaataaaac
     1141 cataaagtaa aagttcaaaa attcccttag gtaaaggtgc ttgagaacac caaatataaa
     1201 gcggatctcc acctatggct atacttacag gcattttttt aaaaccagca tttttgtatt
     1261 cgtgataaaa atttgcccca tctttatgaa tttgccaatg cattaaaagt tcatttttat
     1321 cactcatttg caaacgatac attccaagat tattttgagt tttatctaaa ttttgcgtat
     1381 aaacttgccc catggtaata aatttacccg catcatcttc ccaagttttt agtatgggaa
     1441 gttcttcaag tgagtttaaa atttcataat catacaaggc tttatttttt ttcagtcttt
     1501 taggaggaat atttttaaaa cttaacaaat tcataaaaaa atccattttt gctttaaaac
     1561 tcgtaggaat atgaagcttg gtgagttttg aaatttcttc agccacctct tcataatcac
     1621 gtccaaaagc taaatttaaa gccttttcat tgcaaaaagt attcatcaaa acaggaaatt
     1681 tatattgttt atttaatttt ttatctatag gatttttaaa taataaagcc ttcccttttt
     1741 ctcctttttt agcttctata taggctaaat gagcgatttc aagatctaca tctacaggtt
     1801 cttcaattac ccttaaaaga tcattttctt ttaaaatttg aataaattct ttcatatcat
     1861 actctcagct ttttttaaaa gttctttagc acctttagca ataaactcct tagccaaact
     1921 ctctccaaaa cctttaaaat cattcttttt aatcattctc ttatctttta aaatttcact
     1981 tccatcgggt agtccaagta ccgcacgcac acaaatttta tctcccaaga gctctgcgtt
     2041 aatacctata ggaacttgac aacctccttc taaagtagca ataaattctc tttcaatgct
     2101 tgtttcaatc aaagcatttt catcatttaa acattttaaa agttctaaaa ttttttcatc
     2161 atttatgctt tctataccta aagctccttg agaagccgca ggaataagct catctttgct
     2221 aaattcataa acaaaattca cttgcttatc taagtttaag cgtttaattc ccgccattgc
     2281 caaaataatc gcatcaaaat cattattttt taatttctct atacgagaat tgacattacc
     2341 acgcaaagaa ataatatcta aatcaggtct taataataaa agctgcatct tgcgtctaag
     2401 actagtagtg cctatttttg caccttttgg taaagaaaga aaatctttat aattttgact
     2461 tagcatagca tcattgcttt gctctctttt gcttaccgct gccaaaacta aaccttgagg
     2521 aaaaaaacta ggcacatctt ttaaactatg cactgctaaa tgtgcttctt ttcttaatat
     2581 actttcttca agttcttttg taaaaagtcc tttaccacca atttttgcca aaggagaatc
     2641 cagcaaaaca tcgccttttg ttttaaaacc ttctaaaagc acttcaattt gatgtgtatt
     2701 ttttaaaatt tgggctacat gctcactttg ccaaagagcc aattgacttt ttcttgttgc
     2761 gataataagc ttcattttct atcctctata atttcaacat caataatttc ttcattagaa
     2821 ttttgatact cttgcttggt gtattgatat tttgatttag ttattaattt caaagcaata
     2881 ccaaagaaaa atacaaaaat tccaaaaaca cttgtaataa tccctggaaa aacaagtaaa
     2941 aaccctgcga taacaaaaga aaattgtgtt aacatatcct ttaagccacc catttgaaat
     3001 tcaagcatat ttttccaaaa aattcccaat aaaaccgcac caaaaatcat actcaaaagt
     3061 atgaaaaata aaaaattacc aaaaccaaaa aacactataa aaagtatact tgcaataatt
     3121 tcaagtacaa ataaagggct taaacttaat ttataattca taacactttc tttttaagaa
     3181 tttccataag ttcatcagtt tttataagtt cttttatcaa accttctctt tggataagct
     3241 ctatttcatt cttttctaat cccttgccaa caactaaagc ataaggaaag cccataagtt
     3301 caaaatcatt cattttaacc ccaaaacgct catttctatc atcaagcaat acctctaatc
     3361 caagattagt taaatcctca taaagcttat tagcaaattc taaagccttt tcatctttga
     3421 gatttgaaac aataatttca agcacaaaag gagctaaagt tttattccaa atacatcctt
     3481 tttcatcatg acttgcttca atagctacag ccaacaagcg tgaaacacct atgccataac
     3541 atcccatgta aaaaggctga cttttgccat tttcatctaa gaaatttgca ttcatcgctt
     3601 tggaatattt ttgtcctagc ttaaaaatat gccctacttc tataccttta ctttgtttta
     3661 attttgctcc acatttaaca cagcaatccc cttctttaac ttcaatcaaa tctttaaaac
     3721 gatctttatt taaatttaca acatcaatac cgattaaatg ataatccttt tcattcgcac
     3781 ccataatcat ttgcttttcg ttttcaagct caaaatctat ataaaaatct atatctttta
     3841 atcccacaaa acctataaaa ccagctacta agccagcttt ttccaattct tcttcgctcg
     3901 catcgactag ttcaagggca ctgcaagcat tttgagcctt gatttcttgc aaatcatcac
     3961 ttcctcttat aaaaaacaca actaatttgc tttcattttc ataaatagct ttttttacca
     4021 ctgctttaat cgtataaaaa gcattaattt taaaaaattg tgctaaagaa tctatagttt
     4081 taatatttgg agtgtgaaat ttacttgcat aatttgcttc aggacgctca tcttgacaag
     4141 tttttttagc tctttttgca gcttcaacat tagccgcata atcacaattt tcacaaatta
     4201 aaatatcatc ttccccattt tttgccaaaa ccataaattc cttagaacca cttccaccaa
     4261 tagccccact atcagcttca actgctctaa aatcaagccc cattctttgt aaaatttgag
     4321 aataagtttt atacataagc tcaaactcac gccctaaatc ttcttcatta gcatgaaaac
     4381 tatatccatc tttcattaga aattcacgac atcttaaaag cccaaatcta ggccttgctt
     4441 catcacgaaa tttaagtcca atttgatata agtgcaaagg aagttgttta tagcttgtga
     4501 ttttgttttt taccaaagaa agcatagctt cttcatgtgt tggacctaaa acaaattcat
     4561 tttcttttct gtctttaaaa cgcaaaagtt cttttccaaa aacattataa cgcccacttt
     4621 cttgccacaa acttgcagga gtgataaaac taagatttac ttcttgtgct ccagccttat
     4681 ccatttcttc tttaactata tttttaatct tgtctaaaac tctttttccc aaaggcaaga
     4741 aattataaag tccgctacca atttgttcta caaaacccgc acgcgttaaa aaaatatgac
     4801 taggtaaact cgcatctttt ggcgcttctt ttaaacttgg tgcataaaat ttagtaaatc
     4861 tcatcattat tctccatatc aaattcacat ttatattgat ttaaaccttc aagattattt
     4921 tgcaaatcaa aaacataacg catagcatta atcactgtat cgctttgcat tttaccttgt
     4981 aaatgtttca aatttacagt aggcgtgtgt aaaaaagcct taaaaacttg atgaatcaac
     5041 tttctagcct cttctttatc agattttttc aaatatcctt tttttaacgc aatttcaagt
     5101 tgtttatctg catattcttt agcttgcaag cgtatagctt tgataatagg catcaaagcc
     5161 aaatcgttta aatacctaaa aaattcactt gtttcacgac ctattatccc ataagccata
     5221 cgagcttctt gttctcttag tgctaaattt ttttgaacca caatttcaag atcatctaca
     5281 gcaaaaacag atatattttc attttcattg atatcaatat cccttggaac tgcaatatca
     5341 aaaaaatacc ttttataaga aagttcttct attaaagaat ttgtaataat agcatttggt
     5401 gcattggtag ctgagaaaaa aaactcgtat tgatttaaat atttttttaa attttctaaa
     5461 ctatcatatt cgcttaaaac accaagtctc tcacacaaat ctttagcttt ttgtaaatca
     5521 cgatttaaaa taatcacctt agcacccgca gcaattaaat gttttgccgc aagttctccc
     5581 atctctccag ctccaataac aacagctttt ttttgcgtta aatctgcaag ttcttttgct
     5641 tttgccacgg caacgctagc tacagaaata gaatttttag aaatttgagt ttcattgcgt
     5701 accttagcag cacatttaaa agcactatgt actgctcttg aaaggtgtac tccacaaaaa
     5761 ttatttttta cagcaaaagc aaaggcatct tttaattgtc ctgctatttg agtttctcca
     5821 accaccaaac tatccaaaga acttgctaca gaaaaaagat ggtggattgc tccactatct
     5881 tcaaaaatat cagctttttc aagtaaaata tctttatcaa catcacaaag taaagccaaa
     5941 gatttaacaa taaactccgc acaggccatt tttacaaaag caacaatttc aacacgattg
     6001 caagtactta taaccaaaca ttcttcaata ttttcatgag tgctaatgat ttttaaaaac
     6061 tcactttttt tagcttcatt ggaaaagctt aacttttccc ttaaggcaat atctgtattt
     6121 ttatgagtaa aagatataca ataatacatt aaaattccct atctatcata gctttaataa
     6181 tatcattaag cttgttatta tcatattttt caattgcttt tctagccttt tttgcataag
     6241 ttttagcttc taaaatagct ttttctaaag ctttttgttc ttcaaattta gtttttagcc
     6301 attctttttc attttcattt aaatcttttt taaataaagt ctgcaaatat atcctatctt
     6361 gttcttgtaa attttcataa agataaatat aaggcaaggt agttttaccc tctttaaaat
     6421 cattcatagc aggttttcca agaatttttt catcactctt aatatctaaa atatcatcaa
     6481 tcatctgaaa agcaagtcct aaatttttac catattctgc aaaatctttt tcatataatc
     6541 cagccaaaat agctccgcat ctagcacttg cttcaatcaa aacagctgtt ttattataga
     6601 tcattttcaa ataagcttct ttattgatat taaatttctc tcccaaatca acatccataa
     6661 gttcgcctat agcaagcttt acaacagcat ctgaaataat acttgcaaat ctagcatcca
     6721 ttttgcttaa ttcataaaag gcttttgaat acaaaatatc gcccaacata agagcatttt
     6781 ttgtaccaaa ttcagcatta acagatcttg ctccacgcct taattcactc tcatcgataa
     6841 tatcatcatg taataaacta gcaagatgta tcaattctat agctgtgcaa attttaaaag
     6901 caatctcact ctcatctgcg atagctaata ataatttaga gcgtaatttc tttcctggtt
     6961 ttacatttga aagcatattt aaaataggtt catagccaag ttcttctaaa aactgtttta
     7021 ttaattcatc tattttttgc actatctttt ccttgttaat tgctattatt attttctttg
     7081 cttgttaatg gttttacctg aggttcgtta aaattaatca taggaacaac ctgattattt
     7141 tgcggtggat tttgtaaagc tttttttctc ggatctaaaa attctaccat taagcgagat
     7201 tccttatctt ctatataaac cgtaaaagtt gccaaacctt tattataacc actaaattct
     7261 aaaataagtc ttgctctatc aatatgtgga ttagtataat caggtattaa agtttgagtt
     7321 acccaatcta aatttcttct taaactcatc acaaattgac gcggatattt gcgaaatttc
     7381 gaatgtacga tgatattagt attatcaaac aaagtccaat aaaaatcaaa attttgcacc
     7441 ttatcttcat agcctatttc tttaatctgc acactagctc tctcatcttt tttaagtata
     7501 aatttataag tataatcaaa agttggttca gatgctaaaa cattactaaa aataaaaaaa
     7561 atacaaatta aacaagggct tattttaaac aattttagcc ttcgtgtcct aaaatttttg
     7621 cgcccaattc tatataaata tcattttgcc tttcttctat aaaatcacca ttttctaata
     7681 tgaaattttt tacatccatt tctgttaaac cttgtttttc caaaagttcc accatggcaa
     7741 tatgatcagc aaaaaattcc tcaaaaactt tttctaaggc tcctaaattt ccattttgta
     7801 taatttctat aaatttttct tttggagttt tattaaacat ttcatcaaaa aaatccatta
     7861 attttccttg aaaatataag tttttgatta taaaatttta atcgttaaaa gtagctaaat
     7921 taaaataatt aaaatttaaa ttttatttgc aatgtgtaaa attttagaag ttaaattccg
     7981 catgatgcgg aatttattat gaatatggtt ttgcttgagt ggcgtatttt acacccagat
     8041 caaaagcttt agcatttgca tcacgagttt ttgcaggaac catatgaagc atagtttctt
     8101 ttaaaacatc taaatctata catttgctca tataagcagc aattgcaagt gcaacaactg
     8161 attgagtagc cacatttcct acctcatctt tagctatggt aataataggg atttcaaaaa
     8221 tttgccattt tttataatct tcactttcag gatgtactaa atttggctct acaactataa
     8281 tacctccttc ttttacaccc ccacgaaaac ctttataacc cttatctgca gtcgaaagca
     8341 taaaatctac ttccccttct acagcataag gaaataaaat ttctttatca tcaatgataa
     8401 tatccacctt agtaggaccg ccacgcactt gtgaagtata agtagaagcc ttaaaagctt
     8461 gacgaccttc tttaatggct gcttctgcta aaatttctcc tgcggtgata acaccttgtc
     8521 cgccttcacc gccaaatctt aattgatatt tcattttaaa gctcctaaat ccaccattct
     8581 tttttctttg gctgcacgac gtacttcttc ataagcgtgg cagtattctg gctgagaatt
     8641 atcttcatgt aaaattcctg ttggaaattt atcttttctt tcttcaaaat ccatgctttc
     8701 aaatttagct ttatccacaa cgcgattttt aatccaatca agcatagcta cagcttcgcc
     8761 cattttgttt tttctgccta gattgatatg acaatttgaa aaaacatcta caaaactata
     8821 acccttatgc gctaaagcct tataaattaa attttcaagc ttattagctt cgatcacatt
     8881 accccttgcc acaaaagaag ctcctgcagc tttagttaat tcacacgcat caaaattagg
     8941 gtcaatattt ccaaattgag ctgttactgt ataaaaacct tttggagtgg ttgggcttgt
     9001 ttgggaattc gtaagtccat agataaagtt attgatcaca atgtgggtta aatcaatatt
     9061 tctgcgacaa ccatgtatag tatgatttcc accaattgcc aaagtatccc catctccgct
     9121 tactacaata acatgtttac taggattggc tagtttaatg cctgttgcat aagctattgc
     9181 tctaccatga gttgtatgaa ctgtattgca atttacataa gaactcattc tgccactaca
     9241 acctataccc gaaacaagac aaacatcatc catattccaa ccaagttttt ctatcgcgcg
     9301 gataatacat tttaaaacaa caccatcgcc acatccccaa caccattgag taggcatttt
     9361 atctactctt agatattcat cataattaaa agccatttat atattctcct ttaccttagc
     9421 aataatttca cttggagtga taggacgacc atttgcacgg tgcaaactaa taaaatcgcg
     9481 acgcgaagtt actctttcaa tctcttcaag atattgtccc atattaagct cgcttaccat
     9541 tactttttta aatttgctta caacttcagc gatttttttc tcagccactg gataaagagt
     9601 aatcggacgg aaaagcccca ctttaatccc ttgctctctt aatctttgta tagcttcttt
     9661 tgctgaacga ctcacgcttc cataagcaat gattaaaaat tcagcatcat caagcatata
     9721 ctcttcataa gtacaaatat cttcttgatt gttttttatt ttacctatga gtctttccat
     9781 attttttttc actataactc catcttcagt tggaaaacct atatctccat gatgaagtcc
     9841 tgtaacatga taacgataac ctgtaaagaa aggatttaaa gttgcaggct cattttctcc
     9901 tgctgcataa ggtttataat cctttttatc gccttcaaat tttttacggt tatatacttt
     9961 aatatctttt aaatcaggta aaaccgcttt accattcatg tgccctacag tttcatccat
    10021 aagtaaaaat actggagtca tatatttttc agctaaatta aacgctctaa tggtttctgt
    10081 ataagcttct tcaagacttg caggagcaat agcaatactt gcaaaatccc catgagttgg
    10141 tgctttagct tgaaacaaat ctccttgtgc tacacgagtt ggaagacctg ttgaaggacc
    10201 acctctcata acattcacaa tcacaagtgg aatttcagca ataaatgcaa gtcctatttg
    10261 ctctgctttt aaagaaattc ctggaccgct acttgcagtc atggatttta ctccactcat
    10321 tgccgcacca atagccacgc taatacctga aatttcatct tccatttgta taaaagttcc
    10381 atcatttgca ggaagcatat ggcttaattc atgagctatc tcactactag gagtaatagg
    10441 ataacctcca aaaaatttac atccacaatc aatcgcagct ttggcgatta aaacattacc
    10501 tgttgctata acttctctca ttatttttcc tatgctaatt ttttgtattt gttatttttt
    10561 acggctacag ctctatcttt agcctcagca gtaagtttgg caaatttaaa ttcatctctt
    10621 tttgccacca taatagcaaa atcagggcaa tgtgtctcac actcggtaca gcctatacag
    10681 gattcagggt ataccacctc tatcatttgt cctaaaaccg catgcacatc atcgcgcata
    10741 gctaaaaccc cagcggggca atagctaaca caaatattgc atgctttaca tctatgctca
    10801 tctacccaaa caggggtatc ttttggagct gtcatactca tgttttttcc tttattaacc
    10861 taatattttt tgaatttctt caccaatcaa agccggagaa tccaccacat gaattccata
    10921 gctttttaaa gcttcttttt tagctgcagc gctttcatca gcacttccta ctatggcacc
    10981 tgcatgcccc attcttttgc ctttaggagc agttgcacct gcaatgaatg ctaccacagg
    11041 tttgctaata ttttctttaa taaatttagc cgcttccact tccaaactac caccaatttc
    11101 acctatcatt acaatagctt tagtttcatc atctttttgg aattcactta aaagttcttt
    11161 ataagcaaga cctatgatag gatcaccacc aattcctact gcagtagaaa ttccataacc
    11221 accttgaact acctgattag cagcttcata agttaaagtt ccactttttg aaataagccc
    11281 cacgcaacct tttttaaaaa taaaacctgg cataatacct aacttacatt cttcagaagt
    11341 gataatacct ggacaatttg gtccaatgat tttcataccc tttttattag catattgctt
    11401 agcaaacatc atatccttta caggcgtatg ctcggtgatt acaactgcaa gcttaatacc
    11461 cgcatcagct gcttcaatca cgctatcacc cacagcaaaa gcagggacaa agatcaagct
    11521 cacatcagcc tttgttgctt taaccgcatc tgcaacggta tcaaaaactg gtttacctaa
    11581 atgagtttgt ccgcctttat gaggggtgac acctccaact atatttgtac cataagccat
    11641 gcattgctca gcgtgaaaag ttgcttcttt acctgtaaaa ccttgaacta ttacttttgt
    11701 atttttatta accaatatac tcattttcca tccttatcct actaaacttt ttacaagctc
    11761 tgcaccgttt ttaagattgg ttgctgcttt gatattttta agatttgaat tatctaaaat
    11821 tgtctttgct tctgctgcgt tagtgccatc aagacgcact acaattggaa tatttacctc
    11881 aacattctta gtagcttcta aaattccatt tgctatccta tcacaacgaa caataccacc
    11941 aaagatattg ataaatataa cttttacatt tttatctctt aaaataattt caaaagcctt
    12001 tgcaacagtt tctggagaag ctcccccacc tacatctaag aaatttgcag gttttgcacc
    12061 actataatta ataatatcca tagttgccat tgctagaccc gcaccattta ccatacaagc
    12121 tacatctcca tctaatttca catagcttaa gccaaattca gccgcttctc tttcagcagg
    12181 attttcttca gtagtatctc taagttcagc aatttcagga tgacgataaa gcgcactatc
    12241 atcaaaactg cattttgcat caagggcata aaaatcccct tctgcagttt taattaaagg
    12301 attaatttca agcatattca tatctttatc catgtaaagc ttataaagtt tagctatcat
    12361 agaaatgagt tttttgcctt catctttatc aagtcccaaa actctcgcta cttcaagtcc
    12421 atgaaacatt ttaaatccaa tttgtggatc aatacctact tttgcaattt tttcaggact
    12481 ttctttggct actttttcta tatccatccc tccttcactt gaagcgataa tggtaatttg
    12541 ctctgccatt ctattaaaca aaatagccaa ataatactct tttactatat tagcaccact
    12601 ttctatataa agtttttgca caagtttgcc ttcaggtcct gtttgatgag ttactaaatt
    12661 cattcctaaa attttacttg cataatcttt tacctcatct aaattcttag cgattttaac
    12721 accaccacca agaccacggc ctcctgcatg aatttgagct ttaactgccc aaacactacc
    12781 gcctaattct ttagcattag ccacagcttc atctacgcta aatgcaactt ttccctttaa
    12841 ggtagggatg ccattgtcta caaaaattgc ttttgcttga tactcatgta tgttcattta
    12901 ttctccttta tattgatatt tgattaaaga tttttctaat ttgtcttttt cttgcaaact
    12961 aagatccatt ttcatgattt caatcacacc ttcaagtcct aatcttgcca taactcccaa
    13021 ggctttgttt tgcactccaa attctccatg taaaatcaca ctcataggta aaaactcgcc
    13081 acttcttata gactcaagca ttcttataca agcactagca ggggctaaat aagctgaagt
    13141 tttaagatgt ttgattactt tagctccacc tgttttaact tcattttcta aatcctcaaa
    13201 ttcttcttca tttaaaaatt cgcttatatt tttattttta acacttgcgt aagattttac
    13261 caaaaccata tcatcattat gaaaaccaat aagtcttgta tccactcttg acattttgac
    13321 attaagtttt ttggcaagtt catacttaaa tcttgcattg tctaaaacac ccgccatggc
    13381 tataattttc tttgatgaaa aaatcccgct ttcataaaga gtattaagta gaaaatccac
    13441 aggattagtt aaaataataa aaagcggatc ttctgtaaaa tctttaattt ttttagcaca
    13501 atcaagcata atgcttgtat ttaactgaag caattcttct ctactttgcc catcttttct
    13561 agcaaaacct gcactaaaaa gcactatatc tgaatttttg gtatgagtat aatctttagt
    13621 gcaaagtaaa tctatattta aatttaaagc agctatgctt tgagtaagct ctagttcttt
    13681 tgcgtaaagc aaatcctcgt taatatctac taaaacaatt tcatttgcta tttctcttaa
    13741 aatcaaagca taagctacgc ttgaacctac attgccagcc cctataacag tgattttcat
    13801 ctttgtccta ttttttctaa aatagcgtta aaagttgcac ttggacgcat aattttattt
    13861 gctttttcat catcaaattt ataataccca cccaaatcca ctttcacacc ttgtgcatcg
    13921 ttaaattcgg ctctgatttt ttcttcatta gaagaaagct ctagggcaat atctttaaaa
    13981 aagctttgaa gctccatatc acttgcctgt cttgctaaat gatttgcaaa atacattgct
    14041 aaataaaaat gacttgttct attatcatct tctttgactt ttcttgatgg agctttatta
    14101 ttttcaagcc attcgcctat agcctcatca agacattctg ctaaaacctt agctttatga
    14161 ttgccacact tatttgcata aaattccaaa cttgcttgca aagccaaaaa ttcacccaaa
    14221 ctatcccaac gcagatgatt ttcttcgact aattgttcta cttgtttagg tgctgaaccc
    14281 cctgctcctg tttcaaacat agctccacca tttaacatag gcacaacaga aagcattttt
    14341 gcacttgttc caagctctaa aataggaaaa agatcggtta aataatccct taaaacatta
    14401 cccgtgatag aaataacatc tttaccttct cggattaact ctaaacttct taaacaagct
    14461 tcttttggag ttaaaatggc tacattttta cccttttctt ttaaacgatt ttgtaccaaa
    14521 gttatcatga ttttattact agctcttttg ctatctaacc aaaaaatagc ttcggctcca
    14581 ctaagttctg atctttctat acctaaatca atccaattta acactgcatc aaatttagcc
    14641 tgattagctc tataaatatc accttttcta accttatgtt ctaataaaac tttaccgtta
    14701 gaaactattt taaaagttcc ttcttcttta gccacaaagg ttttatcgtg cgatccatat
    14761 tcttgagctt ttttagccat taaacctaca ttagatacac tgccaagttt tgaaggattt
    14821 aaagtaccat ttttatgcaa atcttcaata actgcctcat aaatagttgc gtaagtttga
    14881 tcaggaatta cagcatttgt gtccttttcc ttaccttcct tatcccacaa tcttgcgcca
    14941 tttttaagca ttgcaggcat agaagcatca acgataacat cgcttggaac atgaagattt
    15001 gtaatgcctt tatctgaatt taccatagaa atatctgcag atttagctaa aatttcattg
    15061 tattttttta aaatttcatc ttttttgctt gaattttcga tcttacttaa aagctcactt
    15121 aaaccattat ttggattaat gcctaatttt tcaaattcat cttgaaattc gataaataat
    15181 tctttaaaaa atacttttac cgcataacca aaaagtatag gatcacttac tttcatcatt
    15241 gtagctttta aatgcaaaga aaaaagcaca tcatcatctt tgcttgcttt aatttctttt
    15301 gcataaaatt cctgaagttt ttgcacatcc ataaaagtag cgtctaaaat ttcatttttt
    15361 tcaagtttta agccctcttt taaaatttct tttttaccat caacgcttgt aaattctata
    15421 ttagccacac aatcttgatc gattaaaacc gctttttcat tagagaaaaa atccccttct
    15481 ttcatataag aaacacgagt ttttgagttt ggattaaact caaccacacg ataaggattg
    15541 ttttttgcat aatcttttac cgcttttgtt gaacgacgat ctgaatttcc ttgtcttaat
    15601 acaggattaa ccgctgaacc taaaactttt tgatattttg ttttaatttg caattcttca
    15661 tcattttttg gctcatctgg gtaatttggt aacatgtaac ccttatcttg caattcttta
    15721 atcgccgcct taagctgagg aatagaagct gaaatatttg gggttttaat aagatttgca
    15781 tccgatcttt tgacaagctc acctaaaagt tctaaagcat cttcacatct ttgttcctct
    15841 tttaaatact cactaaaagt agctaaaatc cttccagaca aagaaatatc cgaggttttt
    15901 actcctatat gtgccctact taaaaaagct ttcactatag gcaaaaacga ataagtcgca
    15961 agagctggag actcatctgt taaggtataa gtaatttgca tttttagtcc tttaaaatac
    16021 ttatttttat tttcattttt aagtatatta caaataaaaa aaaatgcaag agtaagttta
    16081 aagtttgttt tagttttcaa acaaacttta aatattttta attaagtaaa ttagcaggaa
    16141 gttgtatgat atttttaata agattaaaag gggtttttag agtatctgtt aaaatttcgg
    16201 tatgaaattt agggtcatct atacttccat ctatttttaa gtttgtgcta atttcttgat
    16261 ttttacctaa aattacataa tttaaaattg gaaccttgga tatagcttct gaagctgatt
    16321 ttaaagtttt aagctctaaa ctaaaatcca ctgtatttaa tcttaaattt gctgatccta
    16381 aaccatatat atctacacta tcaccattta aattaatagc cgaaacactt aaaagatctt
    16441 tttttctatt aaaaataatc tttccatcat gtaagcttaa acctttttga ttaaaagttg
    16501 gagatttaaa catcaataaa cttggtacag tatcgataaa ggaaataagc tgatttatac
    16561 cttttaaatc cttcacataa gtatttttaa aatcgatctg tccatcaaaa tactccaatc
    16621 cacttccttt tatacttaag ttaaacactc catcttgaac agcttgtttt tgtaaaaact
    16681 catttaaata attatcatca atattgctaa cgtttaaatt taaatcatta gaagaataat
    16741 aaagatcaaa ttttgcattt cctctagaac ctttaagatc taaagcattg ccttttaaat
    16801 cagcttctac tctatcaaaa gccaaagttt tattagaatc tgccaaaatt aaagctacat
    16861 ttgctccacc aaaactaata ttttgggtat tagtagcaat atcaaatgtt gaatttgaag
    16921 agttggaatg ttttctataa atataactta aattttttaa atgaatttct ttattatcag
    16981 aacttatttt agcacttgct gtatcacttt gagtatgaat ttccataatg cccttatttt
    17041 ttacaatatc aaagctatca ttttcataag gagtttgacc gttgataagt aaattatttt
    17101 taaaataagc atcattaaca cttgcattaa aatcttcaaa atttaaagtt ttataataaa
    17161 catttttagc atcgataaac ccaagctttt taagtaatgg agaaaatgaa aataaaatct
    17221 taggattatt aagattagcc tcaagtccat ctttaaaatt taaaatcaaa ttccactgag
    17281 gaatgctaat gttaacattt tgcgaataat ctaattttac ttctacattt tgatttttta
    17341 aatctaaaag ctctccattg tcaaaataaa gccttgaaat ctgagtattg aaatttcctt
    17401 gctgtttttg taagtcaaat ttagcattaa aatcagcttc taaaaagcca tttttaacac
    17461 tggcattttc tatatttaaa tcattttgat ttaattttac aaatgctttt ataatattaa
    17521 aatcagccaa agaaatacta gcattctcta aagctaaaat accactataa gaaatttcac
    17581 ccttatcatg aaaatcaatt ttaagctcca aatcactttt aatttttccg cttttttgat
    17641 aaaaaggtag tgaaaaatga taatcctcta aagctttagc aagtttttcg tcaaatttta
    17701 gattatcaga cttaatgcgc aaataaatcc caactttttt ttcatcaaac aaatcatata
    17761 gataaacctt actagaactt aaatcagcac cattatagaa agctttatta aagacaaaat
    17821 caagcttttg tttgtttaaa tttaaatcga gttttggaat ttcaatagca ttcattttat
    17881 catccaaacg aactttgaca ttattaacat aacctgatgc gctaatattg tctaaataat
    17941 aattatcttt agtaaaatct ataaagccct gcaaataatc taaatgataa aattctccct
    18001 tagccctata tgctacccaa agatttaaac tctgcggaag ttctattctt ttattaactc
    18061 ttttaaaaat ttccgtaata tttctaatgt ttaaatcttc tattttataa gctaaatttt
    18121 tatctttgta agagatgctt gcgttaaagt caagcaattc tccacttgct ctaccttgaa
    18181 aataataaaa ctcgctctta gtattgatac ttaaatttcc atcaatactt aaatcataat
    18241 cttttaataa aagtttttta atatcagcta taagttcttt attttgacgc tgtaatgtt
//
LOCUS       DARGBD010000024        17931 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.024, whole genome shotgun sequence.
ACCESSION   DARGBD010000024 DARGBD010000000
VERSION     DARGBD010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17931
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.024"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            104..778
                     /locus_tag="SFZ04_000704"
     CDS             104..778
                     /locus_tag="SFZ04_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HEG8065005.1"
                     /translation="MYKTTDILNRVYAILNITDDKEFCGIYEIKPNTLSTWRTRNTIP
                     YELLLKISKEQNISLDSIFFGKMRINDDNLQLRYYTDVAAAAGYGAINSKLEYTEIVI
                     SKKFACEALGLPPLTRLDIIKVIGDSMEPFIHNGDVIAVDVSKNKLELVKNGDIVVIN
                     LDGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVVNIDQISCAEIIGVVCKAISIKTFEN
                     AIIKYE"
     gene            1330..2823
                     /gene="feoB"
                     /locus_tag="SFZ04_000705"
                     /pseudo
     CDS             1330..2823
                     /gene="feoB"
                     /locus_tag="SFZ04_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
     gene            complement(2820..4313)
                     /locus_tag="SFZ04_000706"
     CDS             complement(2820..4313)
                     /locus_tag="SFZ04_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG8065006.1"
                     /translation="MGKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAVKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS"
     gene            complement(4317..5141)
                     /gene="fabI"
                     /locus_tag="SFZ04_000707"
     CDS             complement(4317..5141)
                     /gene="fabI"
                     /locus_tag="SFZ04_000707"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEG8065007.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGLA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(5145..5816)
                     /locus_tag="SFZ04_000708"
     CDS             complement(5145..5816)
                     /locus_tag="SFZ04_000708"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEG8065008.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEELIGAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYERLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLVSLTKAPLLYGGSVNENNIKEILSVKYCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(5813..7015)
                     /locus_tag="SFZ04_000709"
     CDS             complement(5813..7015)
                     /locus_tag="SFZ04_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEG8065009.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(7018..8016)
                     /gene="gap"
                     /locus_tag="SFZ04_000710"
     CDS             complement(7018..8016)
                     /gene="gap"
                     /locus_tag="SFZ04_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEG8065010.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRQAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIMDDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            8076..8621
                     /gene="nadD"
                     /locus_tag="SFZ04_000711"
     CDS             8076..8621
                     /gene="nadD"
                     /locus_tag="SFZ04_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEG8065011.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            8649..8975
                     /gene="rsfS"
                     /locus_tag="SFZ04_000712"
     CDS             8649..8975
                     /gene="rsfS"
                     /locus_tag="SFZ04_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEG8065012.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(9006..9383)
                     /locus_tag="SFZ04_000713"
     CDS             complement(9006..9383)
                     /locus_tag="SFZ04_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HEG8065013.1"
                     /translation="MKKILILLTLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(9430..10800)
                     /gene="pgmL"
                     /locus_tag="SFZ04_000714"
     CDS             complement(9430..10800)
                     /gene="pgmL"
                     /locus_tag="SFZ04_000714"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HEG8065014.1"
                     /translation="MLDVIFREYDIRGLYGKELNKKSVKAIGFCLGKTMLNKGCKNVS
                     VGYDARYSANELFNYLISGLNKAGIKIYDIGLAPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGVAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDI
                     KARFKN"
     gene            10923..11459
                     /gene="fliL"
                     /locus_tag="SFZ04_000715"
     CDS             10923..11459
                     /gene="fliL"
                     /locus_tag="SFZ04_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HEG8065015.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            11459..11806
                     /locus_tag="SFZ04_000716"
     CDS             11459..11806
                     /locus_tag="SFZ04_000716"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEG8065016.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAVV"
     gene            complement(11807..12226)
                     /locus_tag="SFZ04_000717"
     CDS             complement(11807..12226)
                     /locus_tag="SFZ04_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065017.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(12223..13584)
                     /locus_tag="SFZ04_000718"
     CDS             complement(12223..13584)
                     /locus_tag="SFZ04_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEG8065018.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDKVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFGKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEGKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGVVEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            complement(13581..14702)
                     /locus_tag="SFZ04_000719"
     CDS             complement(13581..14702)
                     /locus_tag="SFZ04_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HEG8065019.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFSIKVDLSKIE
                     KNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(14775..15959)
                     /gene="kpsS"
                     /locus_tag="SFZ04_000720"
     CDS             complement(14775..15959)
                     /gene="kpsS"
                     /locus_tag="SFZ04_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HEG8065020.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            complement(15956..>17931)
                     /locus_tag="SFZ04_000721"
     CDS             complement(15956..>17931)
                     /locus_tag="SFZ04_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEG8065021.1"
                     /translation="DLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENS
                     PSFSMVKDDIGIYYDATMPSKLENLLNTCEFKDEEIKQAKKAIELIKKYKISKYNNNL
                     DIPDDYFQKDEKRVLIITQTANDASLEFGLAKGFKTVDMIKDAIKENPKSKIYIKIHP
                     DVLSGKKQSDLDINSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECI
                     CYGMPFYAGWGLTKDKLERKRRMQKRSLEEVFYAAYILYSEYFNPYLNQKSNIFDTIQ
                     TLAKYKDIEKVNSNKLFMLGFTLWKRHFIKPFFKAKDNKIIFLNSLKSLARYKLKEND
                     KFFIWGKRIDYNTLKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLI
                     VDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKI
                     NAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGN
                     RVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPF
                     YAGWGLTKDKYRCERRTRKLSLEELVAGALIIYPRYINPKTKTLCEIEVCLDIMLNLQ
                     KAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK"
BASE COUNT         6179 a         3133 c         2391 g         6228 t
ORIGIN      
        1 aagatacaat ttgtaaataa tttttcaaat tataagacaa aatgcgaatt aagtcaagtt
       61 attttatcgc attttgtgaa ttttttaata aaaaaggttc ataatgtata aaacaacaga
      121 cattttgaat agagtttatg ctattttaaa tattaccgac gacaaggaat tttgtggaat
      181 ttatgagata aaacccaata cattaagtac ttggagaact agaaatacca tcccttatga
      241 gttattattg aaaatatcaa aagaacaaaa tatatcgctt gacagcatct tttttggcaa
      301 aatgcgaatt aatgatgaca atttgcaatt aagatactat acggatgttg ctgccgctgc
      361 tggatatggt gcaataaata gcaaattgga atatacggaa atagtaataa gcaaaaaatt
      421 tgcttgcgag gcattgggat tgccgccttt aacaaggctt gatattatta aagttatagg
      481 ggatagtatg gagcctttta ttcataatgg agatgttata gctgttgatg ttagtaaaaa
      541 taaactcgag cttgtaaaaa atggagatat cgtggttatt aatcttgatg gtgaaattta
      601 ctgcaaaaag ctcctcaagc aaccttttgt aaatgaaatt gtattgagct ctatgaattc
      661 tttttataag gacattgttg ttaatataga tcaaattagc tgtgctgaaa ttataggcgt
      721 tgtttgtaaa gcaatttcaa ttaaaacttt tgaaaatgct attataaaat atgaatgatg
      781 ctatatttta ttattgcaat attaattata ataattgctt tatttattta ttctggtttt
      841 aaaacggaat cgaaattaaa aaaaatagca gatggtgttc ttactaaaca agatttaaaa
      901 gagatagaag taatatctaa atattatgaa atttctttaa tagaagcagc aaaaattcat
      961 tatggtaaag ctattattac agaagaaatg atcgaaagat tagaaagacc ctatcgagaa
     1021 ttatatgaac aatataaaaa actttctata aatgagcaag gaaaattttt gcacaatttg
     1081 cttttaaata atcaagatga atatgcagaa gcaataagat ttattcaaat tgcagaagaa
     1141 agcgttaata tagctttaaa atcaaaaaat aaagatattg cagaaagcag aagaaaactt
     1201 gcattagaaa tagaacaaaa aatacagaaa ggatatccta aagcctatgg cttaattata
     1261 gatataattc agcttttgga agataattat gatgtaaatc tttttgaaaa tcaatgcatt
     1321 aagtattatg aagaagctca aaagttaaaa accattaaat ccaagcaaaa aagaattgat
     1381 tatataaatg atttaataaa agaagctgaa ataaatccta aaatcgatga gaaatttgtt
     1441 aatttttgga aaaataaagt aaaagaaata caataattac attttaagtt taaggtttgt
     1501 agaaaaataa aatgcaacca aaaagtatca ttttattttt ctatggttac attttatttt
     1561 tccgccgaca aaattatcac acacaaaaaa gaagaaagaa atttaaccaa aaaaatcgat
     1621 gccttactta tccataaatt ctttggctta cctatatttt tatttttaat gtggctttta
     1681 tttcaactca cctttagctt agggcaaatt cctatggatt atatagaatc aggctttaat
     1741 gccttaggtg aacttgttaa aaacaatatt tctaatacct tcatcgcttc agctttagct
     1801 gatgggatta tcgcaggtgt tggtgctgtg atactttttt tacctaatat aataatttta
     1861 tttttaggca tagctctttt agaaaccaca ggctatatgt caagagtagc ttttttactt
     1921 gatgggattt tacataaatt tggtttgcat ggtaaaagtt ttattccgct aatcactggt
     1981 tttggttgtt cggtacctgc ttttatggct acacgcactc ttaagaacaa aagagataga
     2041 cttttaactc tttttgtgat caattttatg agttgcgggg caagacttcc tgtatatgtg
     2101 ctttttatcg gtgctttttt tccaagtgaa aaagcaggaa attatctttt tggaatttat
     2161 attttaggtg cgattttggg actttgtgct gcaaaatttt taagaatgac agcatttcgt
     2221 ggacttgatg aaccttttgt tatggaaatg ccaaaatatc gtatgccaaa ttggcattta
     2281 gtttggttta tggtttataa taaagccaaa atgtatctta aaaaagcagg aactttcata
     2341 cttttagcct ctttgctcat atggtttgct agcaattttc caaaaaatga agaaaattta
     2401 aatgatttta acgctcaaga aagagctata gaacaaagtt atctaggaca atttggcaaa
     2461 ggcatagaac ctatttttaa accccttgag ttagattgga aattaagcgt atctttaatc
     2521 agtggtttgg ccgctaaaga agtgatgatt tcaactatgg gagtacttta ttcactagga
     2581 aaagatgtag atgaaacaaa taatgattta aaaggaatta ttgccaaaaa tatacctata
     2641 ccaagtgcag tggcttttat tttatttgta atgatttata atccctgctt tgcagcaact
     2701 atagtttttt caaaagaaag tggaaagcta aaatatactc tctttctctt tctttttacc
     2761 tgcacaagtg cttatatagt agcttttata gggtttcata ttgctaaaat tttattaaat
     2821 taacttgctt ttaatgatga aattttagta atattatctt caaaagcttt taaaatacta
     2881 taagcaatac cttcaaaatc aagcccaccg caaagataga ttaaagtcat acgaaaagat
     2941 ttactcacat caagctttgg tttttcagca ttcatattta acttaaaatc ataaggactt
     3001 gcatgtttaa aagcataatt ttttgccgca attaaaaaat cattcttatc ttttaaaaat
     3061 gcgcctttaa ccaaaataaa actcatctca agatatttcc aaaaatcttt tgaaggcata
     3121 ggattttcat caaaattttg ttctataaaa gcatagtttt tctcaaagga ttttttataa
     3181 ttttctacaa gcgaagcacc taatttattt ttagctatat tttgtaaaat aagttttata
     3241 ttgctttcaa attcaaaatc tatttgttct aaaattttaa tttgctcttc tagaaaaaat
     3301 tcttgtttta actcttcatt gcaaagttta gcgtaagaaa aaatatttgc cataggtttt
     3361 tcataattcc caaactcatc ccaaaaattt ttctcactac aggctataca accatgtcct
     3421 gcagccactg gccaagaagt tttagcatta aatttcactt taggacagtt gttgtaagta
     3481 taaggtcctt tacaacctat cttaaataaa caagctccat tctttacagc ttcatcgtca
     3541 aaatgttcag caaaaatccc actttcaaat ttcgcctttc tttcacacat atcatgcaaa
     3601 catttaccat aagcccacac aggacgattt tgctcatcaa gttcaggcaa aactccaaat
     3661 aaagcaaaaa aacttaaagt cgcaatgata tttatatcac ttggaggaca acctgggata
     3721 tttactactt tttgacttaa gacttcgcta ataccacaag ttttactagg atttggataa
     3781 gcagcctgaa taccaccata acttgaacaa gtacccactg caaagatagc cttggcttta
     3841 gcggctagtt tttctaaaat ttcatagcca ctctctcctt gcgctcctat agtaagaaaa
     3901 aaggtatcaa tggctgcaac accaccttca accgctaaaa taaaatcttc ttctaaaaca
     3961 tactctaaaa gctcttcagc cttagtgcca tttgccgcca ttaaagtttc atgatattct
     4021 aaagaaaaaa aatcaaaaat aagctcatca aaacttggca actcagaacg caacaaactc
     4081 tcgctacacc ctgtacattc acaaagatga agccatacta attttgtttt aggtgcgatt
     4141 tgaaaaaatc tttgagcaag agctggaatt tcattgccta aagataaatg cctagcaaga
     4201 atttttacac tttcttcatt gataaccttg tcctctttta aagtagaatt ctcaagtttt
     4261 ttaatgcgat cttcaagtat attttttaat tcttcattgc taagctttcc cattttttat
     4321 cctttttgat tatcccaaca aagaacagtt tgcccttctt catttttttc aacatcaccc
     4381 atacccatga tgttatatcc tgcatcaaca taatgtattt cacctgtaac accatttgct
     4441 aaatcgctaa gtaaatacat agccgaattt cctacatctt ctatactaac attgcgtttt
     4501 aaaggagaat tgatttcatt gtattttaaa atcattctaa aatcccctat tccacttgct
     4561 gctaaagttt taataggacc tgctgaaata gcattaacac ggattccttt tacccctaaa
     4621 tctcttgcca aataacgcac agaactttca agtgcagctt ttgctaaacc cataacatta
     4681 taatgaggca catatttaac cccaccaaga taacttaaag tcaaaatcga acccttatct
     4741 tttaaaatag gtaaaaccgc acgtgttaaa gaaagtaaag aatacacaga agtttgcata
     4801 gctatatcaa aagcttcttt tgaagtttct aaaaaagaat tttctaaagc ttcttttgga
     4861 gcaaaagcaa ccgcatgtac tacaaaatca atctcaccta aatctttttt gattttttca
     4921 gcgatagaat ctaaatgctc gttattattt acatcaagct cataaacaaa attagaatta
     4981 aactcttgtg ctataggttc tacgcgtttt tttaaagcat catttaaaaa agtaaaagca
     5041 agctcggctc cttgatcaaa acatgctttt gctatgccat aagcgataga tttattattc
     5101 gcaaccccta caataaggcc ttttttaccc ttcataatca tcttttatcc tttgattaat
     5161 tttataaaat tttctacttt taaagctgca gagcctatca aaactccacc acaatatttt
     5221 acacttagaa tttctttaat attattttca ttcacgcttc caccataaag caaaggcgcc
     5281 ttggttaaac tcactaaaaa ttcaagcact ttagcgatat ctgtactttg tgcactcact
     5341 cccgttccta tagaataaat aggctcataa gcgataatga gtctttcata atttaaatca
     5401 ataatttcaa gttgtttttt taaaaactct aaagtcttgc ctgaattttt tgtatctaaa
     5461 ttttcaccta tacaaaaaac aattttataa ccatgctctt tagcaaaatc aaatttagct
     5521 ccaataagct cttcatctcc taaagctctt ctttcagaat gcccgattaa aacacatttg
     5581 atcccaaatt cgtccaaatg ctcttttcca agctcgcctg taaaagcacc attaacacaa
     5641 ggataaaaat tttgggctcc ttgtatgaag ttattttcat tttctaaaaa tgctacacta
     5701 ggtgggaaaa cgataatatc atcacatttt gctcccatag ttttatttaa aatttcagca
     5761 taaattttaa aacttgctct tgtgtgattg cattttaaat ttgcagcaaa gatcattcat
     5821 tttccttaga tcttaaagct tttacacctg gaagttcttt gccttctata agctcaagag
     5881 aagcaccacc tccagtagaa ataaaagtca tctcatctgc atcgcctgcg cgcgcaacca
     5941 catcagccgt atcaccgcct ccaacaacag aagttgcatg tccttcgctg atataatgac
     6001 tcattttaat actgcctttt gaaaatttat caatttcaaa aacacccata ggtccattcc
     6061 accaaatcgt ttgcgcatca gaaatcacct ctttaaaaag tctcacactt gcaggtccta
     6121 tatctaaacc catccaacca tttggaattt cttgcgctgg aacaaatttc atcggcgcat
     6181 cttgtgagca cgcaggagcg gctacaacgt ctactggaag ataaattttc actcctaaat
     6241 ttttaccctt ggtaagaatt ttattagctt cttctaaaag ttcttcttct aaaagtgaat
     6301 ttcctatatc ataacctaag gcttttaaaa aagtaaatgc catacctccg cctatgatta
     6361 atttatctac ctttggtaat aaatttgtca atgcttgaag ttttccactt acctttgaac
     6421 ctccaacaac agcgacaaaa ggacgtgctg gatgtttgat aagattgctt gcaaaatcaa
     6481 tttctttttg gagtaaaaat cctgcacctt tgtgtttttc atcaaagaat ttagtaatag
     6541 cctccacgct agaatgtgct ctatggcata ctccaaaagc atcattgata taaacttgaa
     6601 ccatagaagc aagttctttg gctaaatttt catcattttt agtttcgcct ttttcaaaac
     6661 gtaaattttc aagaagtaaa atttcacctg cttttaaatt catagctttg gtttttgcat
     6721 cttcgccgat aacatctttt gccataataa tttctttatc taaaagtcta gcaagacgct
     6781 tagcaacagg ttctaaagaa tacttggaac taatttcttt tggacgccct aaatgagagg
     6841 ctaaaatcac actacaacca ttatccaaac aatatcttat cgtaggaata gctgatctta
     6901 tgcgtctatc atcagtgata tttaaaaaat catcttgagg aacattaaaa tcacatctta
     6961 taaaaacttt tttcttagct aaatcaatgt cttttataga aataatatca ctcatgatta
     7021 agccttattt gcaatatata ctgccatatc taccagacga cttgaatagc cccattcatt
     7081 atcataccaa gcaattacct tgataaaatc atccataatc acttgagtta aatcacttgc
     7141 tacaatggct ccataagaac aagtgataaa atcgcttgaa actctttcat catcatccac
     7201 cattaaaatg ccttttaaat ttgtagctgc agcttgtcta aaagcttcat tgatttcatc
     7261 tttgctgact ttacggctta gctgcgcagt taaatccacg cttgatacat caatcactgg
     7321 cacacgcata ctttgtccgt gaagcttgcc attaagttca ggcataacaa gtttcatagc
     7381 ttttgctgcg cctgtagaag ttggaatgat attttgcgct gcggcacgag aacggcgttt
     7441 atctttggcc ttagcatcaa taatactttg tccatttgta taagcatgta ttgttgtcat
     7501 aagtcctttt tctataccaa aattatcttg taaaacacga caaacaggac ctaaacaatt
     7561 tgttgtacaa cttgcattag aaataatgct ttcacccttg taaagttctg aatttactcc
     7621 taaaacataa gtaggtgtat catcttttgc aggagcactc atgatcactt tttgcactcc
     7681 catatctata aattcttgac attttgccat agttaaatgc gctcctgtac actctaaaac
     7741 aatttgtgcg ccgtgttttg caaagtcaag atcttttaca ttgcgacttt taaatacttt
     7801 gattttttta ccatttacca ctaaatcatc gccttcacta tcaacactgc ctttaaattc
     7861 accatgtact gtatcgtatt taaaaaggta ttttgtaagt tcaatatccg tagtatcatt
     7921 tatcgccaca agctcaatat catttctttc taagatgatt cttgcaacac atctgcctat
     7981 gcgtccaaaa ccatttatag caacttttac agccatttaa tttccttttg caaaatataa
     8041 tgctaatatt ctacaaaaaa aaggttaaaa ttttaatgaa gatagcactt tttggtggca
     8101 gttttgatcc accgcataat ggtcataata gcgttgtttt agaggctttg gaaaaattag
     8161 atattgataa acttattatt atgcctactt atatcaatcc ttttaaacaa agttttagtg
     8221 ctgatgaaaa gcaaagattc ttatgggtta aaaaactttg gggacatttg ccaaaagttg
     8281 aaatttgcga ttttgaaatc aggcaaaaac gccctgttcc tagcatagaa agtgttaagt
     8341 atctttataa gctttataat cctagtaaat tttatctttt aattggcgca gatcatttag
     8401 aaaaacttca tctttggcat gattttgaaa aactcaattc tttagtagaa tttgttattg
     8461 ccaatcgcaa tgatatagga attcctaaga atttcaaaga tttaaaaacc aataaaaaaa
     8521 tcgcttcttc tttcatacgc gacactttaa atacaaatga ggtttgtgaa gaaattaaag
     8581 atgaagtaaa aaaatattat gaaaaattac aaaaaaattg atacaatttc aaaaattaaa
     8641 ggacaataat gcaagaaaga atagatttaa tcgttaaaat tttagatgaa aaaaaagctg
     8701 aaaatatcaa aaccattgac atgagcgagc aagaatactt tgtaaaatat gtcattattg
     8761 cagctacttt aggagaaaga cacgctctat ccttgatcga tgagcttaaa acacaactta
     8821 aagccaaagg tgaggaattt ttaaacatag atagtagcga agaatggagc gtgattgatc
     8881 ttggcgatat tttaatccat cttttaacac cagaacacag aggaatttat aatatagaag
     8941 aattactaga aaaccttaaa aaaggtaggg tttaaaaaag ctaaatttaa ttagcctttt
     9001 aatttttaga gattatcaat atattcttta atttcttttt taattttctc tttttgttct
     9061 tttaaagctt cttttttagc tttatactca gccttactca tataatcttt ttgttctttc
     9121 aaggcatcaa gttctttttc gattttttcc acttcttgtt ctttaagttt tttagcttct
     9181 aactttttat cataaaacat aggatcttta gcacaatcat tttgtacttg ttttaaagca
     9241 agctctaagc ttaaagttct agctgtatca ttatgcgctt tagaaaaact gatttcttta
     9301 ttgatacgat cgatttttct atcacattca cttgcaccaa aagcaaaagc acatagtgta
     9361 agtagaataa gtattttttt catttttaat tcctttttaa aataaattaa atcgcggaat
     9421 attatctcat caattcttaa atctagcttt tatatcatta aacaaagtaa ataccatact
     9481 ttcaagctct tttgctcttt ctaaagatgt tgcctcaaag cgtgtgataa gataagggct
     9541 ggtattagat gcacgaagta aagcccatcc atcgccaaaa tctatcctag ctccatcaat
     9601 ttcacaaaga cttttaacac cttttaaagc tcctttttca atctcttttt gaaattcttc
     9661 cacaagtttg aatttttctt cttcatttac aggaatttta atttcaggtg tagtataaag
     9721 ttttggtaaa gctttaatca tactttctag atcaaaacct ttataaacaa gctccaaggc
     9781 tcttaaaaat gcataaattc catcatcata accaaaatat ctatgtttaa agaaaatatg
     9841 cccactcact tcagcagcta aatcaatatc tttttctttc atcatttttt tgatattaga
     9901 atgtcctgtt tttcccataa aaatagttcc aaatttagcc acttcatcaa aaagattttt
     9961 agaacatttt acctcaccta aaatgcgtgg attagggata tctttagcaa acaaataaca
    10021 aagctcatcc ccacaaaata catgagtttt actcaaagca accattctat cagcatcccc
    10081 atcaaaagca aaagctaaag aataatcttg attttgattt aaaaattctc taatcgcact
    10141 taagttttct tcttctgtag gatctggagc atggtttgga aactgtccat caggctctgc
    10201 aaacattaca tgagctttta aatttaaagc cttgattaaa ggctctatca ccactccagc
    10261 cacaccattt gtgcaatcaa caccaaattt ataattaaaa tcctttaaaa agctaaattg
    10321 ctcgcacata aatttcacat aaaggtttaa aatatcgtat ttttctactt ctaaattttc
    10381 ttcaatatca tcatctaaat gcttataaac ttcttttgaa aactctttta attctacacc
    10441 aaaaaaactt tctttattaa tagtaatttt aaaaccatta taatcttttg ggttatgaga
    10501 gcctgttatc ataacatttg catcaaattt caagccctca taaagactaa aatatcccaa
    10561 tggagttggc gcaagcccta tatcatagat ttttattccc gctttgttaa gtccgctaat
    10621 tagataatta aaaagctcat ttgcactata tcttgcatca tagcccacgc ttacattttt
    10681 acagccttta tttagcatgg tttttcccaa gcaaaaacct atagccttaa cacttttttt
    10741 atttagttct ttgccataaa gccctcttat atcatattcc ctaaaaatca catctaacat
    10801 ttttttcctt caaattcatc tcttctttaa cctaaaattt atcgtttttc taaagcaaat
    10861 ttggatagaa aagaaatttt tgctacaatt ttacattaat ttcactaaat gaaggaaaat
    10921 ttatggatga agaattagaa aacgaagaaa cgaaaaagaa aaaaggcggt tcacttgtaa
    10981 ttattattgt tattttactt tttgttttac ttcttagtat tatgggagta attgcttggc
    11041 ttatttcaag cagttcaagt gatgaaagtg aagtcaaaga agctccaaaa gaagaggcaa
    11101 aagccgataa acctaaagtt tcagctcctg ctcagcgagg tagtgatttt gctaatatag
    11161 gtcctatgta tccacttgat ccttttaccc taaatttact tagcgatagc ggctcaagat
    11221 atgtaaaatg cactatagaa ctagaacaaa atagcgaact tttaaaacct gaacttgata
    11281 aaaaagtccc agtcattcgt gatattatta ttcgtacatt aacagctaaa acttttgaag
    11341 aagtaagtac acaaaaaggc aaagaacgtt taaaagatga gctagttgga aaaatcaatg
    11401 aaattttaac cgatggcttt attaaaaatg tttattttac ggattttgta gtttcttaat
    11461 gcgtgtaggc tgtgatatca tcgccatttc tagaatagaa aaaattcatt ctagacatgg
    11521 caaaaatttt ttggataaat ttctaagccc aaaagaacaa atactcatta aaaatccagc
    11581 aactctagca ggtctttggg ctgctaaaga agccgctagc aaggctttgg gtgttggaat
    11641 ttgtgaatta tgcagttttt ttgatattga aatatcaaaa gatgaaaaaa acgcgcctaa
    11701 attaaaatat tctcaaaaaa ttacaaaaga ttttaatatc actcaaactt ccctaagtat
    11761 ttctcatgat aatggttttg ctatagccat agtggctgta gtttgattat tttcctatag
    11821 tttgcttgtc taaatttctt gaaagtatga aatccaccac aggttgttct cttttgtttg
    11881 ctcttttaca atgatctttt tgaaaaaaat ctgtgatttt tataacaatc cttgcccatt
    11941 ttttgcgatt tctttcacgc cacgcatgag aagaaacgct ctcccaagca tagccattaa
    12001 acaagcttgc atttacaaaa tgatctaagg ctctaacacc ctgtcttgct cgtgcggtat
    12061 taaaaaaaat tcctataatc acgataaaaa gatatcctaa aactgctaaa ggtactattg
    12121 cacaaagcag aatagtccct gctaattttt cttttaagct tccttttaaa gtgcgtttta
    12181 cacgacgacg aaaattggcg cgaattttag ttctaactct tttcatagct ttcttttgct
    12241 aaattttatc ctcataccat tagccgaacg cactgttaaa cgccctacta catcaggtac
    12301 aaaaccttct tcaagttcta gtttgtaagt ttttaaaata ttagccaaaa tcaaaatcgc
    12361 ttcttgcata gcaaaacctt gtcctataca aattctttcc cctaccccaa aaggcaaata
    12421 agcatctttt ttgtactctc cttcaaaacg agaaggatta aatccatgcg gatttgtcca
    12481 aaattcttca tgtctgtgta tcagccaagg agcaatcacc accccagaac cttttttaat
    12541 aagcttatct ctaacttggg tatctttttt tgcctctctt gcaaaaaacc caacaggagg
    12601 ataaagtctt aaagattctt taaaaatatt tgttaagtat ttaaactgtc ttagatgcga
    12661 aatttcaacg actccaccct gtaaaacctg agtaatctcc tcgtaagctt tttcttgctc
    12721 cttaggataa agactaagca aataaagcgt ccatgtcaaa gaacttgctg tggtttcatg
    12781 tcctgctaaa aaaagcatag ccacttgatc taaaatttcc tcaaaagaaa aacgcttatt
    12841 tgtatcagca tccactacta aaagcaaaga tcctaaaata tcttcaaatt ctgcattatc
    12901 tgccatatca tatcttggtt ttatgatatc acttaaaacc tgtctgatca catctccggc
    12961 tttagcacgc ttacgatctc ctagcacata agaaagccat tttggaaaac gaaacatacg
    13021 acgcatggct gtatgcacgc tttgctcttg aaaagtcaca aaggcgttta agattttttt
    13081 accttttccc tcatcgagtt ttgaagacat aatggtgcga aaaatcacat cagcggtaat
    13141 aaaagtcata gcttcatcta cttcgataac agcatgattt ggatacttgc caaaacgatc
    13201 catcatatct gccacagctt cactcataag attaaacact ttattgatac gagtcatttc
    13261 aaaacttgga cgcaaaagtt ctctttgttt tttccaaact tcaccatttg tagtaaaaat
    13321 actctcccct aaaagcggac ttaaaagctc atgtaaaaat gcacttttag gaaattctct
    13381 aaccttatca accatcattc ttttaacttc tttagtatca tttatgacat aaagatcaaa
    13441 atttggcatc ttcacatagc ctgtttgcat tttataacta cgctcataaa gcccgtcaag
    13501 ccaagatcta cgctttaaca aaaaagttaa gagcgtagaa gctttatttt tataaggttt
    13561 tggaaaaaag gggcattcac tcatattttt accttttctt ctaaaaattt aggcattatg
    13621 atgaaagaaa aaaaatcata atcaccttta acactaatac tataaagata taaaaagtgc
    13681 gctttgtttt tatctctttt tattttttta tactcatgtt tttcatataa agtgtgaaat
    13741 ttagcactta aaaatggagg tgtaaattta gcatttacgc cactcgtgcg gaaaaaatcc
    13801 acttgaggaa aacatgctcc atcaataatc gatgtgtaat cataccattt taaatcaaac
    13861 cttgaaacaa attcaagctt ctttctaaat tcatccgctt ttttttgata actcactaaa
    13921 ggaatgcatt ctcctaaagt aagaattttt aatttacgaa gtaaagataa atctaaattt
    13981 tgtcttaaaa tacactccaa aacttctata caaactatag ttccaacact atgtgctact
    14041 aaaacaagtt cataatcttg tttattttca ttttgtttta gcttatctac tatggtattt
    14101 gcaaaaagct tgattctttc ttgcatagtg cctgtttttt tatcttgcca agtagcacaa
    14161 aaagcacaaa ttcttgctat ccaaaataca gctaatttct tacctaattt aaataaaaaa
    14221 tgatttagta aaaatcctaa aaaacatcct atgatgatag ctaaagaaaa atgcatataa
    14281 ttttgcaaaa aagcaaaact tccaaaagcc aaaaccaaag aaaatagtaa agaaaataac
    14341 acataaaaaa aaggataata acctgtgata agttgataaa tcgactcttt gccaaatttg
    14401 ataaaaagcc ctgtgatagt ataaattcta aaaaaactat aacaatctgc caaagcatct
    14461 ttataatttt ctgaccaatt tttcttaaca atatcattcc atgttaaaaa atgatattta
    14521 gtttgtactc cttcgcaaga aatttgaaaa aaaggaaatt gctcattttt ttcaatttta
    14581 cttaaatcaa ctttaatgct aaaagcatga gaataatctt ttaggttttt tttaaataaa
    14641 tcataataaa atctataact tttaggatca tatcctgcta tataaaatac ttccctatcc
    14701 atacaataat ttctttttgc ttttaattat aacaactttg ctttaaaagc tctcttaatc
    14761 aaagcttttt agtcttattt gtctaaaaag aaatttttat aaaaattgcc gttgaattga
    14821 ttagtttgta aaagatattt tttaaaatta cataccaaaa caggattggg tttataagca
    14881 tgagcttcac gccaaaaaaa ttgaagtttt tttggataag ataagccttc aaaatcataa
    14941 aaagcattgc cacaaacctt agtcggacag ccttctaaaa tagcactaag gcctactgtt
    15001 gaatttatag taatacaacc caaagccttt cttaaaagaa ctggcaagtg ggtatcatga
    15061 acatataaaa cccttccttc tacatgatat ttttgactta aatcatttat gagtttagaa
    15121 taattcttat agcccctatc catgggatgg tgtttaaaaa ctagataaga tttagctctt
    15181 gcatggtttg caaaagaaag tatggtttcc tctataaagt gctctatgct ttttttgtaa
    15241 tgatatttaa tttgcgtatc gctataaact tgtaaaatcg ccaaaaagta ctttttttct
    15301 aaattataaa tcttttcatt tagttttttt tctgtaatct tataaagata ctttctatac
    15361 aatgatctaa accaaaataa aaattcaaaa ggatataaag tgcgatgatg aagtttgttg
    15421 ttaaaaaatg gagccaaaat aaaagcaaac aaccaataca aaaaagcatc aaaagccata
    15481 aatttaaatc cacctggaat ttcttttata ctttctttgg taaaaatatt ttgagaaaga
    15541 taaaaatttt tatcacgcgg taaagaagaa tttgcattca ccccatcttt ttccaaagta
    15601 atacaataag gccttaaata tccttcttca aaaatccata tttcaattcc taattcttta
    15661 gccactttaa tagccttagc atgtataatg cgacaatcat tatacattaa aatagcatcg
    15721 atttttttat tttgaaaaaa atctctatag aaattttcaa gatctttttc atcacactta
    15781 cacctcgttc cactaggata gaaaaaaaaa tctccgccgt taaaattgag tttaaaaact
    15841 ttggtttggt tttttttcat tttcattgca agatgatgaa aaaaatttcc cacaggtcct
    15901 tgcaagagta aaacattttt accgctaaat tcttttttaa ttttagtgct aaatctcatt
    15961 tctttgctaa aaattcataa aatcttctta tttttctaag cataaaagtt ttaaaatcta
    16021 ttgccaattt tatatatttt tttgaaaaat aagctttttg taaatttagc attatatcta
    16081 aacaaacttc aatttcacat aaagtttttg ttttaggatt tatatatctt ggatatatga
    16141 tcaaagcacc tgctacaagc tcttctaggc ttagttttct tgttcttctt tcgcatctat
    16201 atttatcttt tgttaaaccc cagcccgcat aaaaaggcat gccataagta aaaacttttt
    16261 tagctcttaa aagagcatca aaaccacttg tagaagtaat agtgtgaatt tcatcagcaa
    16321 tttttatagc gctatcaata ctgcaatctt ttacaatctc atcacaaaat tccaagatga
    16381 gtgtttcatc ttttaaacct acacggttgc cgcttaacac atcaggatgg ggtttaaaga
    16441 tgatataagc atcttgattt ttagaacgca cctccttaag caaatcaaga gtagataagc
    16501 caaaaccccc taaaatcatc gaagcatcat cttcaacttg agcagggatt aaaataatct
    16561 tttgtcctat tttggcattg atttttaagt cttcatgctt taagccattg tattttgaaa
    16621 agcggttctc aagtaagatt tttataatat tttttgccct atttagcata ttttcatcaa
    16681 aaatttcgtt ttgcaaaagc tcttctaatt tacttgcttt atttggatct atgtaaagtc
    16741 ctttatcatc aacgattaaa gaaaaagggc gcgtaagatc agaacctaaa gagattgagc
    16801 gaataaatcc atcttcaact aaagaaattt tgggagtaaa atggagcaaa ttctcatctt
    16861 gcgctttttt tataagagta gttttaagag tgttataatc tatcctttta ccccaaatga
    16921 aaaatttatc attttcttta agtttatatc tagctaaaga ttttaaagaa tttaaaaaaa
    16981 taattttatt atctttggcc ttaaaaaaag gcttgataaa atgccttttc cataaggtaa
    17041 aacctaacat aaaaagcttg ttagaattta ccttttctat atctttatat tttgctaaag
    17101 tttgaatagt atcaaaaata ttactttttt gatttaaata aggattaaaa tactcgctat
    17161 aaagtatata agcagcatag aaaacttctt ctaaacttct tttttgcatc cttcttttac
    17221 gctctaattt atcttttgtt agaccccaac ctgcataaaa aggcatacca taacaaatac
    17281 actcacattc ttgcatcaaa gcttcaaaac ccataccaga agttttggta taaaccttat
    17341 caaaaaactc aagtaaggct atgggattaa aattttcagt aattaaaata cattctttag
    17401 gtaaggaatt tatatctaaa tcactttgtt ttttaccgct taaaacatca ggatggattt
    17461 ttatataaat tttagattta ggattttctt ttatggcatc ttttatcata tcgacggttt
    17521 taaaaccttt agcaagccca aattcaagcg aggcatcatt ggccgtttgg gtgatgatta
    17581 aaaccctttt ttcatctttt tgaaaataat catctggaat atcgagattg ttattatact
    17641 tgctaatttt atattttttg ataagctcta tagctttttt agcttgcttg atttcttcat
    17701 ctttaaattc acaagtattt aaaagatttt caagctttga aggcattgtt gcatcataat
    17761 aaatgcctat atcatcttta accatagaaa aacttgggct attttcaacc cctaagttta
    17821 atgagcggat aaatccatct tctaaaagta tgaatttagc cttatatttt ttagctaaat
    17881 tcatagcttt taaacctgat tttttgcgtc cccaaccaaa gaaaagatca t
//
LOCUS       DARGBD010000025        17291 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.025, whole genome shotgun sequence.
ACCESSION   DARGBD010000025 DARGBD010000000
VERSION     DARGBD010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17291)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17291)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17291
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.025"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..821
                     /locus_tag="SFZ04_000722"
     CDS             <1..821
                     /locus_tag="SFZ04_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEG8065022.1"
                     /translation="GKVVNLADLDINVRDMNELIINFDEFKHKFKDLDSKTAYEIPKE
                     DYLAPIIEPRQDIICLGINFLDHAKESAQFKGEKFEEREYPVYFGKRCNQATAPFGSI
                     SLHADVTSQLDYECELAFILSKDAYKIKAEDAKDYIFGYTIINEISARDLQKRHKQFY
                     RAKSLEGSTIMGPYITSVDEIAYPPELHLKSYVNKELRQNSNTKFFIFDIGYVLEELS
                     SGMLLKAGTIISMGTPSGVGMGLNPPVFLKKGDEVRCVIENLGELCNKIKNINY"
     gene            885..1799
                     /locus_tag="SFZ04_000723"
     CDS             885..1799
                     /locus_tag="SFZ04_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG8065023.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLTEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAVAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            1789..3567
                     /locus_tag="SFZ04_000724"
     CDS             1789..3567
                     /locus_tag="SFZ04_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8065024.1"
                     /translation="MTNKKSSFLIKFIILSILVLTFILVLLAIIFNNYSSSKNNKDLI
                     NIVQQLEISDEKINSIFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYKMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            3673..3840
                     /gene="dba"
                     /locus_tag="SFZ04_000725"
     CDS             3673..3840
                     /gene="dba"
                     /locus_tag="SFZ04_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HEG8065025.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            3852..5378
                     /gene="dsbI"
                     /locus_tag="SFZ04_000726"
     CDS             3852..5378
                     /gene="dsbI"
                     /locus_tag="SFZ04_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HEG8065026.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSATIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(5399..6073)
                     /gene="queC"
                     /locus_tag="SFZ04_000727"
     CDS             complement(5399..6073)
                     /gene="queC"
                     /locus_tag="SFZ04_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEG8065027.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCISDVPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            6151..7377
                     /locus_tag="SFZ04_000728"
     CDS             6151..7377
                     /locus_tag="SFZ04_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEG8065028.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMYEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            7469..7865
                     /locus_tag="SFZ04_000729"
                     /pseudo
     CDS             7469..7865
                     /locus_tag="SFZ04_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
     gene            complement(7877..9553)
                     /gene="ilvD"
                     /locus_tag="SFZ04_000730"
     CDS             complement(7877..9553)
                     /gene="ilvD"
                     /locus_tag="SFZ04_000730"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEG8065029.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNNYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSIE
                     TVMNAHQLDALICVPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYEAKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            9713..10360
                     /locus_tag="SFZ04_000731"
     CDS             9713..10360
                     /locus_tag="SFZ04_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HEG8065030.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVSAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            10425..10664
                     /locus_tag="SFZ04_000732"
     CDS             10425..10664
                     /locus_tag="SFZ04_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HEG8065031.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            10697..11272
                     /locus_tag="SFZ04_000733"
     CDS             10697..11272
                     /locus_tag="SFZ04_000733"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEG8065032.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(11273..12718)
                     /locus_tag="SFZ04_000734"
     CDS             complement(11273..12718)
                     /locus_tag="SFZ04_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEG8065033.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNFKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLVYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADMAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(12728..17218)
                     /gene="gltB"
                     /locus_tag="SFZ04_000735"
     CDS             complement(12728..17218)
                     /gene="gltB"
                     /locus_tag="SFZ04_000735"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEG8065034.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKNANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAQELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
BASE COUNT         5825 a         3079 c         2617 g         5770 t
ORIGIN      
        1 gtggaaaggt cgtaaattta gccgatcttg atatcaatgt tcgtgatatg aatgaattga
       61 ttataaattt tgatgaattt aaacataagt ttaaagattt agactctaaa acagcttatg
      121 aaattccaaa agaagattat ctagctccta tcatagaacc tcgacaagat atcatatgtc
      181 ttgggatcaa ttttttagat catgccaaag aatctgcaca atttaaaggc gaaaaatttg
      241 aagaaagaga atatcctgta tattttggaa aacgctgcaa tcaagccaca gctccttttg
      301 gcagcatatc tttacatgct gatgtaactt ctcagcttga ttatgaatgt gagcttgctt
      361 tcattttaag taaagatgct tataaaatca aagctgaaga tgcaaaggat tatatttttg
      421 gttataccat catcaatgaa atttcagcac gagatctcca aaaacgccac aagcaatttt
      481 accgcgcaaa aagccttgag ggaagtacta tcatggggcc ttatatcaca agtgttgatg
      541 agattgctta tccacctgaa ctccatttga aaagttatgt caataaagaa ttacgacaaa
      601 actccaatac aaaatttttt atttttgaca tcggatatgt cttagaggaa ctaagttcag
      661 gaatgctctt aaaagccggt accatcatat caatgggaac cccaagcggt gtaggaatgg
      721 gtttaaatcc gcccgttttt cttaaaaaag gtgatgaagt acgctgtgta atagaaaatt
      781 taggagaact ttgtaataaa ataaaaaata tcaattatta aataatttac taaaattata
      841 ctataatggc attttaaaaa cttaaattaa ggcagaaatt tatcatgaaa aaaataataa
      901 tgattttatg tttatcttat gcaaatatag tctttgcagt agatatgata acccctattc
      961 caaattccat ctcttatgat aaagaaaaag ctaaacttgg aaaaagtctt tatatggata
     1021 aaagtttatc caaagatgga aaagtttcgt gcaatacttg ccataggctt gatcaacacg
     1081 gtgttgatgg gcttgaattt tcaataggag ttgataatca actcgataaa ccctttaaca
     1141 ctcctacaac ctttaattct gtgtttaatt ttgtgcaatt ttggaatggc agagctaaag
     1201 atttaacaga acaagctatg ggaccttttt tcaatccaaa agaaatgggg ctaagtcctg
     1261 aacttctttt acaaaaagtt aattcaaatg aaaattatgt aaaaactttt aaaaaacttt
     1321 atggagaagt tacggtagaa aacatagccc ttgcagttgc tgaatttgaa aaaaccttaa
     1381 tcaccccaaa ttctcctttt gatcgctatc ttagcgggga tcaaaatgct atttcaactc
     1441 aagctaaaaa aggttacgaa gattttaaag ctaatggctg catctcttgt catcaaggtc
     1501 aaaatatagg tgggaatatg tttcaaaaaa tcggtatttt tgaagaatac ccaaaccaag
     1561 aagatttagg gcgttatgaa atcacaaaaa gagaagctga taaaatggta tttaaggttc
     1621 ctagtcttag aaatatagcc aaaaccgcgc cttattttca tgatggttct atacctactt
     1681 tagatgcttg tgttcagttt atggcttact atcaactagg aaaattttta gatcaagaaa
     1741 cagttgacaa tatagttgca ttcttagaaa gcttaacagg agaatatcat gacaaataaa
     1801 aaaagttcat ttttgataaa atttattatc ttatctatac tagttttgac tttcattctt
     1861 gttttattgg ctattatttt taataactat tcttcatcta aaaataacaa agacttgata
     1921 aacatagttc agcaactaga aatttcagat gaaaaaatca attctatttt tcaaaatagt
     1981 tttaatttta tcaactacga tccaagtgtg caagcaataa aaaaaatgca agaaaacttt
     2041 acaaaactta aaacttttgg gattgacata aacaaagcag aagaaatttt taatgccaaa
     2101 ctaatccagc ttaattattt taaatccgca aattccatag cagtaaattc aaaactttat
     2161 ttatttgaac tagctaaaaa ttattttgaa gaattggaac aaaaccatga aacaaataaa
     2221 aacaactata aaacaatgag ttctatgtta agcgttcttt caactgaaaa tattttacaa
     2281 aaaacaacac taaatcaact caacaatctt atgaaagaaa tcaaaaatga tacaaaaagt
     2341 gaaaatttac aacttttttt aaaacactat aaaatgattg taaagcaaat ttctattatg
     2401 caagataatt cttctattta tgagaataat tctctcatga aagagttaaa acaacttaac
     2461 acttttaccc aaaatactat agaacaatct aatttattta aattttatat cgctttagca
     2521 gtatttggaa tcactcttgt attatttgta ttttttattt tattaacact aaaaaaagtc
     2581 atcatgccaa ttcatacttt agaaaaacta agcgctaatt tagctagcaa agaagccaat
     2641 ctacactctc gtttaaatat agatccaaaa agtgagcttg gacaaagtgc tcaatatatt
     2701 aattcattta tttccaccgt tcaaaactca atcatagaag ccatagaaaa tgctaaatca
     2761 agtcatcaaa attcacaaaa actcaaaaac aactctatga tgcttgaaaa cagctctaat
     2821 tcgcaacatg aacaaattca aggagttaaa gaaatcactc atgttttaga tgatcatatc
     2881 aatcttgcgg gaaatttagc acaagaaagt atagaaaata tgcaagatat gcacatacta
     2941 atggataaag tagaacttac tctatctgaa cttgtaaatt taataaatga aaacaatgaa
     3001 aaagaacaaa atatagtagc caatatggac aatctaaccc aaagtgcgga taatattata
     3061 gaaatcacaa actccattaa agacatagct gatcaaacta atttacttgc cctaaatgca
     3121 gctatcgaag ctgcaagagc aggcgaacat gggcgtggat ttgctgttgt agccgatgaa
     3181 gttggacagc ttgctgataa aacaagtaaa tctcttttaa acatcaatgc tactgttaat
     3241 actatagtcc aacaaatcaa tgacaacaaa gccttaatgg atcttatcca tgattctatg
     3301 aaagaaacct cttcaaaaac caatgattta caacaagaac ttgtaaattc tatgcataaa
     3361 ttggaaagct ctatagaatc aacccaaacc atgaaagata aaagcatgga agtaaaagat
     3421 aaaatgctta tcttaggaac aaatatagat aaagttaacg aacttgcaaa ttctgttaaa
     3481 gatttatcat gtgaaatcaa taatatctct caaaatgttc taaatggtgc ctctaaactc
     3541 tccgaaaaat taagtagctt tcagtaactt ttttcacgtt aatttaactt aacgtgaaat
     3601 ttcaataaaa attttatttt taatttatgt ttttcaagta aaattaccag tttttatttc
     3661 aaaggagata ctatggagtt tcttgaactt ttattagttt taatcgcctt gatactgatt
     3721 atcaaaaaac cagaaaaaga aaatttggct tttggtttgg taatggtagc ttggctttta
     3781 atggtttttt tctatgttgg ccacaaaaca ggcgcactat taacaataat gaatctgtaa
     3841 ggaagggcta aatgaacgaa atcaataaaa caaaaaattt ctacacacta atgtgtttag
     3901 caggcttttt gattatactc ttgcctgtag gtattgcaaa tttgatattt ggttatatgt
     3961 tgggcgatag tccttgcacg ctttgctggg gacaaagaga agcaatgatc tttatcggtg
     4021 taatggcgct tttcattgtt cgttatggta tgaaaggtaa ataccttgct gctcttttaa
     4081 tcatgacagc agtagggctt tatcaatctt ttgctcacta tggtaatcac gctcatagag
     4141 atttagatca aggttttggt ttagcagttt ttggtatcca tacttatttt tgggctgaag
     4201 tagtattttg ggctgttgta ttgctcttag gtgtgatttt tgcttttgct cctaaattta
     4261 atgcttttga agctgaacta aatggagaaa agtttagaaa atatactaaa tttagctttg
     4321 cagcagtttt aatcagtgct atcatcgtag catcaaatgt tttccaagcc tttgttagca
     4381 caggtattcc tccttatgta ggacaaggcg atcctgtaag atttagttta aatccaaaat
     4441 acatcatttg gagtaaagaa ggttggaatg gtttatggca aaatatttct ttcttaggaa
     4501 aacgcgatgt taaagctcct gattatgctt ttgcacctgc aagtgaaaaa cttggcataa
     4561 aatttgataa tgatatcaac aatgctccat ttgcaaaaat caatgatgag cttaaaatca
     4621 caaatgaaca aaccataaat tttgacaaag ccatcaatac tcttgattat atcaataacg
     4681 aatttgtagc aagttctaaa tgggatgtag ctttcttaga taataatttt agcgttaaag
     4741 aaggttttga acttgatcct tatttttcag ctactattga tccaatcatc ggtatcatac
     4801 cttatatgaa cgataaattc attcttatgg gctcaaacaa atctttctta agatttgcaa
     4861 aaaatcctaa tgcaagtgaa gaagatatcg ctaaacaata cgctgacttt gtaaaaggca
     4921 atgataaatt taaaggtcaa ggcgaaagtt taggtcgcgg aagacttgat accgtaagag
     4981 caaaatttaa ccatgtagca agtatgacta cagatggaaa ttatctttat cttgcaactg
     5041 ttccaaacaa caaagacgct aaaacttttg taatctctaa agtttcttta aaagatcgtg
     5101 ttctttcagg agaatttact ccaaaagcaa atcttaaaga aggtaaaact ttaggcgatc
     5161 tttatgtaac ttctatgact tttaaagatg gggaaattta tgcacttagc aaaaatcaca
     5221 atgtgattgc cgtaattgat ccagtcaaag aagaagtagt gaaaactatc gctttcccaa
     5281 gctctatcac taatgctaga agcattttct ttaaagatgg aaaaatcaat attctttctt
     5341 atcaagatgg agcaaacaag ctttatactt taaactaagc tttaagtcct agtgaaaact
     5401 aggacttata tttaatctta tctttaaatc ctgctttttc aaaacctctt aaacgaagca
     5461 aacaactatc gcactcccca caagcttcat cttcactctc ataacaagac caagtaagtt
     5521 ctaaaggtac attttctttt aaggctagtt ctacaatttt agctttgttt agtctaacaa
     5581 gcggagtttt tatacaaact ttgaaattct tacttgtacc ttcattgata aattcttgtg
     5641 ccttttgtat aaactcatca gtacagtcag gataaccact gccatcttct tctaccaccc
     5701 ctataaaaat actctcacaa ttttcctttt cagccaaaga tcctgctatg cttaagaaaa
     5761 ttccattgcg aaaaggcaca taagtgatag gtgggacatc gcttatgcaa agctcatttt
     5821 tagggatatc tatactttta tcggttaagg cattaccccc tatatctttg ataaaactca
     5881 catctaaaat ataagatttt tctactttta aagccttgca aatttgctta aaacattctt
     5941 tttctttttc ttgagtgcgt tgttcatagt caaaatgcaa agcgatgatt tcataacctt
     6001 cttttttggc cagataagca cacaaagtac tatccatacc gccacttatg atacaaagtg
     6061 cttttttact catttttatc cttaaatttg ctataatttc acaattttaa cgaaaatttt
     6121 taaatttaaa ttgcaaaaaa aggcaaaagc atgataaaca taaaactcat agaacacatt
     6181 tttaaagccg cttctatcag tcgttggaat gattatccaa gaatggcaaa tttggttgaa
     6241 cttgacaaac aagctcataa attcatcatc gcatatttta tcgctaaaat ggaaaaagat
     6301 gtggatatga gagtgattat agaaggggga atttttgagt ttttaagtcg tgttgtggta
     6361 actgatatac gccctgatgt gtatcatgaa atcgtgcgtc aaaaaaaagc tgaagttaat
     6421 gcttgggttt taagcaaaat cgaacctatg atagaagata tagaagatgg ggaatttcta
     6481 aagcgttttg aagcgtattt aaacggtaat gcttatgcta aagaaagact tatcttaaaa
     6541 gcagcttcat attttgctac aagatgggaa tttaacatag tttatcaaac ctcagctttt
     6601 ttaaatgata ttgatgagat taaaaacaaa gttgaagaag aattagaaga ttactatgag
     6661 cttataggag ctagaaaaat tgctttaaat caaaaaatag ccaaaattat tgatcttagc
     6721 ggaagacttc gctttcaaaa acgttgggct caaactccac gcataccaga aaccgcggtt
     6781 ttaggacata tgcttgtggt ggcgatttta ggatattttt actcactaaa aatcaaggct
     6841 tgcgataaaa gacttgagaa taatttttat tgtgctttgt ttcatgattt gccagagtct
     6901 ttaacacgtg atattatcag ccctgtaaaa tacggcattg atggacttca tgatatcata
     6961 aatgattatg aaatgaaact tattaatgaa agaattttac cctttgtacc tgagggttta
     7021 agggctgagt tttcttatat tttaggcatt agagaaggta gaaacggtga gtcaaatttt
     7081 gtaaaaaatg agtttgaaaa tcgcacttat aaaaatgcta aaatcgagct ttgcagcgga
     7141 agtttaagct cttttaatga aaatgaattt ggtgctatag atggtaaggc gcttaaatac
     7201 tgcgataaaa ttgctgctta tatagaagca ggacttagta taagttatgg tgtaaagtct
     7261 aaagaacttg aaagtggttt tttaggaatg tatgagtttt ttaaagaaaa tcctaccata
     7321 gatggggtga atttttttga aatttgtgaa agtttaagag agtattttaa aatttaaata
     7381 agatttttat actactattt tcaatatgtt ttaaataaaa atattataat ttcaaatttt
     7441 attttgtata aaatataaag gagttattat gaaaaaatac tttcaaaagc gctatacttt
     7501 agcctttttt ataggtatat tagcgggtat tttcggagct attgttaaat ggggttggga
     7561 agtacctttt cctccaagaa atcccaatgt tttttgacca gcagatgctt tagaacgtgt
     7621 tactccacct aaaatttttc tagaacaact aggcttacct actgaaaggt gcagtttttg
     7681 gattttttgt ttatcttttt gcccatgtta ttgtaatgcc tttaattgca gaagttccac
     7741 cactttctga aattcctttt gatgaacacc tgtctgaaat ttttggccat attgtttggc
     7801 tgtggggcat ggaaatagtt cgtagagata taagaaatcg tataaccaaa gacatagaag
     7861 aatgaaagga aacctttcat tccatatcta aaaccgcacc tttactagca ttgctaacaa
     7921 gtttttgata cattctaagc catcttgaag acacctcttt ttgaggcaat gcaaattctt
     7981 ttttacgttt agcaatttct tcttcactta catttgcatg gatagtataa gcatctacat
     8041 caatttctat ttcatctcca tcttttaaaa gtcctataag accaccttca gctgcttcag
     8101 gggaaatatg accaacgctt aaaccccttg tagccccgct aaaacgacca tcggtgatta
     8161 aagctacatc agcacctaaa cccataccca ttaaaagtga agtaggactt aacatttctt
     8221 gcataccagg accccctttt ggaccttcat agcgtattac acaaacattt cctttttgca
     8281 ccttgccttt gataatgcct tttatagctt catcttgaga gttaaaacaa acagctttgc
     8341 ctttaaattt tctttctccg attattcctg cggtttttat aacgcaacct tgctcggcta
     8401 aatttccaaa caaaatggca agcccaccta cttttgagta agcattatct actttacgaa
     8461 tgatattttc atctttgatt ttggcatttt ttaagcgttc tttgagactt tctcctgtaa
     8521 tggtcagtgc atcaagttct aaaatatgtc cttgtctgct tgaaatttca gccataactg
     8581 cactcacacc gcctgctttg tggatatcat ccatataaac actatttagc gacggggcta
     8641 tttttgctat gtgtgcaact ttgcttgaga tgaaatttaa atctttaata tctagtgcca
     8701 cccctgcttc acgcgaaatg gcaagcatgt gtaaaacagt attgctactt ccacccattg
     8761 ccatatctac taccatagca ttacgcacgg ctttttgagt gatgatattg cgaattttaa
     8821 aacgctcatc taaggcgatt tcacaaatac gacgcgctgc ttttcttaaa agctcttctc
     8881 tttctttgct taaagctaag atggttccat taccttctag tgctataccc atagcttcgc
     8941 ataaggtatt catagaattt gctgtaaaca ttcccgagca agatccacca cttggacagg
     9001 ctgaacattc tatatcttta aattcttctt cgctaatttt tttggcttca taagccccta
     9061 cagcttcaaa aacagagcta agactaatct tttctccttt tttagttacc cctgaagcca
     9121 taggcccacc acttacaaaa atggttggaa catttactct taaagctccc attaacatac
     9181 caggagtgat tttatcgcag tttggaacac agattaaagc atcaagttga tgagcattca
     9241 tcactgtttc aatggaattt gcgatgattt cacgacttgg taaagaataa agcatacctt
     9301 catgtcccat agctatacca tcatctacac ctatggtatt aaactcaaaa ggcacacaac
     9361 catttttgcg tatctcatct ttaatgattt tagcataatt atttaaaaaa taatgtcctg
     9421 ggattatatc tatatagcta tttgctacac ctataaaagg tttgtcaaaa tcttcatctt
     9481 tcaaaccaca agcacgaagt aaagaacgat taggtgcttt taaatgtcct ttttttatcg
     9541 catcgcttct cattgtaact cctgataata attttttaaa attatattta gcaaagctta
     9601 atttttgtga aatttatttt gatatacatt ttcataaatg ataaaaatta ttaattgaca
     9661 aaaatatttt tttataatac aatgcttttt gataatcaaa aaaggagtca aaatgagaca
     9721 atatgaaacc tataaatgcc aaaaatgtgg taatgaagta gaagttcaaa atgtaggtgg
     9781 aggtaagctt agttgttgcg gtgaagaaat gaaatgtatc actacagatt taactgcagt
     9841 aaatttgatg aaagcttttg cgggcgaatc tatggcgaga aacaaatacg atttatttgc
     9901 tgatgtagct gaagaagaag gttggcatgc ggttgctaga cattttagag aagcagctga
     9961 aaatgaaaaa tggcatgcaa gagcagaatt taaagcttat catgaaatcg ttgatggaaa
    10021 acctttagaa gtaactacaa aaaacctagt aagtgctgca gaaggtgaaa actatgagca
    10081 cacaactatg tatccaaatt ttgcaaaaat tgctgaagat gaaggtaaaa aggctatagc
    10141 aagattattt acagctattg gtaaagtaga aatcgaacac gaaagagaat atctagcgct
    10201 taaaaaaatg ctcgaagaag aagaattttt taatagtgaa gtagaagaat tatgggtttg
    10261 tgaagtatgc ggacatatac atcgtggcaa aaaagctcca gcagcctgtc ctttatgtaa
    10321 agcaccaaaa gagtatttta aacgcgaatt tttgggttaa gttaagaaat tcttatcctt
    10381 tttaagataa tattataatt attttttaat aaaaggataa gaaaatgaaa aaattactat
    10441 ttttattttt tgctttaacg gcttttctct ttggtgctgt aaatatcaac actgcaacac
    10501 taaaagaatt aaaaagttta aatggtattg gcgaagctaa ggctaaagcg attttagaat
    10561 accgcaaaga agcaaatttt acaagtattg atgatcttaa aaaagttaaa ggcataggtg
    10621 ataagctttt tgaaaaaatc aaaaatgata tcacaataga ataaaagggc atttttgccc
    10681 ttctttttag aaaaatttga aaactttatt tgacacaaaa gaacttttaa acgaatttga
    10741 tataaattta atcggtattg atgaagcagg acgcggtgct ttagcaggtc ctatgatgat
    10801 ggcagcttgc aaactgaaca aacaacttga tgggttgtgt gattctaaaa aactaagcga
    10861 aaaaaaacgc gaagaacttt atgaaatcat catcaaaaat tcaaactatc tcatacttgc
    10921 tttttcttca gaacaaatcg acgcactagg cttaagcact tgtttaaaaa aaggcttaaa
    10981 acttataaaa aagcatttta aaacagaaaa taacttctta tatgatggaa acaccaacct
    11041 aggtataaac gggataaaaa cacaaatcaa agccgacact agcattttgc aagtaagtgc
    11101 agctagcata cttgcaaaag ttagtaaaga tagggtgatg aatttcttag ctaaagactt
    11161 tccttgttat gaatttgaaa aaaacaaagc ctatggcaca aaagctcata aagaatttat
    11221 agctaaattt ggaatttgca aactccaccg aaaaagtttt aaacttttat gattattttg
    11281 ctaaattttg atgcaaactc aaagcacatt ctataccatc ttttatagcc caaacaacta
    11341 aagattgtcc ttttctagca tctccacaag caaagatttt tttatgagtg gtttggaaat
    11401 tttctgtgct tatgttgttt ttctcatcta atttcactcc aaaattttta gagatagctt
    11461 cttcgcaccc gctaaaaccc atagctaaaa gcactaaatc cgctttataa gtttttttag
    11521 aatttgaaat ttcgacattt atagctttgc cttctttaaa ctcgcgtttt aaatcatttg
    11581 cttcaacacc ttctacatga gtttttccta aaaatttctt tgtcattttt tgatattccc
    11641 taggatcttt gccatataca gcaatggctt cttctaaacc ataatcagta gtaaaaatgt
    11701 cagcttttaa aggccaagga ttgttttggc ttctttgcaa aggtcttttt ggacttcttt
    11761 caaaacgcac tatagattta gccccttgtc ttgtcgctac agcgatacaa tccacacttg
    11821 tatccccgct tcctataacc aagacatttt tacctttggc catatctgca cccttgcctg
    11881 tttttaacaa agttttggta ttttgcgtta aaaaatcaag ggcaaattca acccctttta
    11941 gctttctacc ttctatatca agatctatag gcttacttgc tcctgtacaa agcaccaaag
    12001 catcaaattc ttttagaagt tttgaaacct tatctttgct gtctatattt tcattcactt
    12061 taaattcaat cccacttttt ttaagcaaat ccacccgtct ttgaactata cttttatcaa
    12121 gcttcatatc agggatgcca tacatcaaaa gtccgcctat tttatcgctt ctttcaaaaa
    12181 cacttacttt ataacctagt gaatttaaag tattggcaca agcaagccca gcaggcccac
    12241 ttcctatgac agcgattttt ttgccattgt attgcttagg tttatttact cttactaaat
    12301 tttccttaaa agcattttct ataatggata attcattatt ttttatgctc acactaacac
    12361 catttatcgc acacacacaa gaatcctcac aaggagcagg gcaaacacga ccggtaaatt
    12421 caggaaaagg attggtaaga tcaagtcttt cataagcttc tttccataaa gaacgataaa
    12481 caagatcgtt ccattcagga atgagattgt ttaaaggaca gcccacatct tttccttcgc
    12541 tcatcacacc cgtatgacaa aaagctaccc cacaatccat acatcgtcca ccttgaattt
    12601 cttgttcttt tttatccaaa ggtatagtaa attctttgaa atttaaaacc ctttctttag
    12661 gagcaatttt tttaaaatcc attcttttaa agtctaaaaa acctcttgca tttcccattt
    12721 ttactcctta tttttgtgtg attttcaaaa atgctgctaa atttggatct ttttcatttt
    12781 tacaaagatc aagcattttt aacatctttt cataatctct tggcatgact ttaaaaaagt
    12841 cttttttatc gaatttttct aaaatatctt tagccttttt agaatctgta taagtgatat
    12901 gtttttctat cacagctttt aattcttttt catccttagc attaagatct ttaatatcca
    12961 caagctcggt atttacatga gcttcattgt gtcttccaaa gatataaaca acgcccccac
    13021 tcataccagc agcgaaattc gcacccacat ctccaagaac tacaacttgt ccacctgtca
    13081 tatattcaca accatgcacg cctgttccta aaaccacagc caaagcccct gaatttctta
    13141 cacaaaatct ttcccctgct ataccatcta aatacacttc accttttgta gctccgtata
    13201 aacaagcatt tcctgcgatg atattttctt caggtgaaaa agtggcttca tttgaaattt
    13261 ttgctatgat tttaccacca cttaaaccct tgcctaaata atcattgcta tcgcctataa
    13321 tctcaagttt aatacccttt aacaaaaacg ctccaaagct attgcctgca ttgcctatag
    13381 ctttgatatg gatactatct tcatctaaag catcttttcc ataagttttt aaaatttcac
    13441 ttgaaagcat agttgcaaaa gtacgacttt gatttcctac ttctaaagaa agtttgatag
    13501 gctctttttt ctccacagca tttttacaaa gtggtagtaa aattctataa tcaatcgttt
    13561 tttcaagttt attgtcttta taatctttaa aatgcacagc ggttctatta taagtaggca
    13621 aggattttaa aattttatct aaatttagct ttcctgcttt accttgcaca cttttttggc
    13681 ggagtttatc cacgcgacct atcatatcat ctaggcgttc aaaaccaagc cttgccatgt
    13741 attctctaag ctcctgggct ataaaataca tgaaattaat cacatcatct actttgcctt
    13801 tgaaacgatc tctaagttct gtatcttgag tggctatacc aaaaggacag gtatttagat
    13861 gacaaactct catcattgta caacctaaaa caatcaaagg cgcggttgca aaaccaaatt
    13921 cttcagctcc taaaagtgct gctatggcta aatcacgccc attcataagc tttccatcag
    13981 tttctaatct taccctatct ctaagcttat ttaagatcaa agtttgatgc gtttcagcta
    14041 agcctaactc ccaaggaatt ccagcatgcg gtatagaagt tctaggactt gcacccgtac
    14101 ctccatcata acctgaaaca aggattaaat tcgcgcctgc cttagccaca cctgcagcaa
    14161 ccgttcctat gccattttcg cttacaagtt ttactgaaat tttagcgtct ttgttagcat
    14221 tttttaggtc ataaataagt tgagccaaat cttctataga ataaatatca tgatgaggag
    14281 gtggggaaat aagcgtcaca cctgcagtag aatgtctagc cttagctatc caaggataga
    14341 ctttaaagcc cattaattgt ccgccctcac ctggttttgc accttgagcg actttgattt
    14401 gaatttcttt tgcatgactt aagtagttta aatccacgcc aaaacgccca cttgctactt
    14461 gcttaatggc tgagttttta tccacaccct ctttgatttc atagcgttct tcatcctcac
    14521 caccttcacc tgaatttgat ttagcaccta ttttattcat agcctgtgct aaacactcgt
    14581 gtgcttcttt agaaatagaa ccataactca tcgcccctgt tctaaagcgt ttaactatac
    14641 tttctacact ttcaacctta tctatactga tagcttcact aaaatcaaat tccatcaaag
    14701 aacgcaaatt aacttgtttt tcatctacta aagccgagta ttttttaaag cttttatagt
    14761 ctttgttgcg acaggcttgc tgaagattaa aaatcacaag tggatcgatt aaatgttctt
    14821 ctttagcact tctaaaacca tgaattcctt tagaatctaa agccttatgc gtatcgttaa
    14881 aagcatgttt atgtaaagca atgagctctt tttcaaaatc ttctaaatcc ataccttcaa
    14941 tgcgtgaagt tgtagaagtg aagtatttat caatcacttt agagcttaag cccagacatt
    15001 caaaaagtgc agagccatta taactttgca aggtagaaac tcccatttta gaagcaattt
    15061 tgactatgcc acttgaactt gccttgatga aattttctac cgccttttca taacttaaat
    15121 ttaaatcttt attggcaatg agtttttgta tgctctcata aaccaaataa ggattaataa
    15181 cagtcgcacc ataacctaaa agacatgcaa aatgatgaat ttctctaggt tcaccacttt
    15241 cgataataag acttgtgtgt gttcttaaat tttttcttac tagatgatta tgcactccag
    15301 aaacagcaag caaagcgggg atataagcgt ttttttcatc cactccttta tcgcttaaaa
    15361 tgataataga aacacctttt ttaacctcat cttctatctt aacgcaaagc tcatctaaag
    15421 ccttttctaa agttttttta gaataatcat aaagtataga aaattcttta acttgaaatt
    15481 tatttaaagc cttaacttca aaaagttctt cattgcttat cacaggcaag gctattttta
    15541 cgcgttttgc attgttttca tcaggtttta ataaattgcc ttcgcttcct agataaatcc
    15601 ttgtagaagt aacaatctct tctcttatgg catcaagagg aggattagtt acttgtgcaa
    15661 aaagttgttt aaaataatta tacaaaggtt gataagtttt agaaagtata gccaaaggag
    15721 tatctacacc catagctgct atagcttctt taccattttg agccatagca gccacactca
    15781 ttttaagctc atcataactc caaccaaaag ctttttggag ttttaaaacc tcatcttctt
    15841 ttaaaaactg atgtttataa actccgcttt tttgtttttc aagttcaact aaatttttaa
    15901 gccatttttt ataaggctta gcattagcat aatgctcttt gatttcatta tcagctataa
    15961 ccctacctct tgctgtatca acgagtaaaa gttttccagg ttctaagcgt tttttggctt
    16021 tgatattttt ttcatcaagt tttaaagccc ctgtttcact tgaaagtatg agcatatcat
    16081 cttttgtaag ataatacctt gaaggacgaa aaccatttct atccaaactc gcccccataa
    16141 tcactccatc agtaaaaact atagcagcag gcccatccca aggctccatc aataaagaat
    16201 gatattcata aaaagcacgc tttttgcttt ccatattttc atttttatgc caaggttctg
    16261 gcaccatcat cataaaagct tcttctaaag tacgaccatt tagagctaaa aattctaaag
    16321 tattatcaaa cattgcagaa tcactgctag gcttagctat gataggaaaa atttcatcta
    16381 aattttcaaa atactcactt tgcatcaagc cttctctagc tcttatgcta tcaacatttc
    16441 cgcgtatggt attaatctct ccattatgca ccatataacg gtttggatgg gctctttccc
    16501 aacttgggaa ggtattagtc gaaaagcgag aatgcaccaa agcgatggct gatttcatat
    16561 tgacatcttt aaaatcaaga taaaaatcgc tcaattgagt tgaaagaagc attcctttat
    16621 aaactatggt gcgtgaagaa aaacttgaaa aataaaattt tggcacatta atagctcttt
    16681 tttctataag tcgacgcgta ctataaagca ctctttcaaa ctcaagtcct gcacttattt
    16741 tacttggttt tttcacaaag gcttgtaaaa aataaggcat agcttttaaa gcacttgcac
    16801 ctatatcgct aggattaaaa ggcacttctc taaaacctaa aaattcaagt tttttatcct
    16861 ttaaaccttg taaaaatatt tcttttgctt cttcttttgc atcagtattg ggtgataaaa
    16921 acatctgtgc tacagcataa tcaccctttt taggaagttc aaaacccaat tcttgagttt
    16981 taaaaaaatc atgtggaatt tggattaaaa tccccgcccc atcacctgaa ttttcttcag
    17041 ctcctgcacc acctcggtgt tcaagattca tcaaaatttc taaagcatca caaataacct
    17101 tataagaagc aataccgcgt atattagcaa ctgcagcgat accacaggca tcgtgttcgt
    17161 tctttgggtg gtataaacct atgctttgat tattttctag gatattttct aaatccattt
    17221 tgctctcctt ataagactga tttaaatttt gttagcttta taaggattat agcatacatt
    17281 tttttaaaat c
//
LOCUS       DARGBD010000026        16846 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.026, whole genome shotgun sequence.
ACCESSION   DARGBD010000026 DARGBD010000000
VERSION     DARGBD010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16846
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.026"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(135..272)
                     /locus_tag="SFZ04_000736"
     CDS             complement(135..272)
                     /locus_tag="SFZ04_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065035.1"
                     /translation="MNLILENVSDDLAKVIKAMAKIENTKVKLKKEKKLTINGFNLSL
                     F"
     gene            complement(283..651)
                     /locus_tag="SFZ04_000737"
     CDS             complement(283..651)
                     /locus_tag="SFZ04_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEG8065036.1"
                     /translation="MKKDINYYLNLPYKINLVKLDDGDYFAQFDDKELNKLVLMAGDG
                     KTPNEAIEDLKNAFACYLEEALAKNEFIPEPIQKDKSKNLAITLKNSLVDEIDFYSKK
                     MGLSRSAFLAVSAKAYIKTL"
     gene            complement(648..875)
                     /locus_tag="SFZ04_000738"
     CDS             complement(648..875)
                     /locus_tag="SFZ04_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEG8065037.1"
                     /translation="MNNKEKLIKELENNPKNASFANIEKLLSWYGYKLVSIRGSHHKF
                     KKDNKSIIVPLHKPIKEFYVKQILKLLKDEK"
     gene            complement(994..1634)
                     /locus_tag="SFZ04_000739"
                     /pseudo
     CDS             complement(994..1634)
                     /locus_tag="SFZ04_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003012382.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1637..2776)
                     /locus_tag="SFZ04_000740"
     CDS             complement(1637..2776)
                     /locus_tag="SFZ04_000740"
                     /inference="COORDINATES: protein motif:HMM:NF012798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEG8065038.1"
                     /translation="MAIDRKDYNIPIGKGTHLKRHKDKINSFLFRMQNGGKEKQHAFT
                     IPLRPAWNENEYIRIALARAKEYENEFKKLFSVGYALNSSILIKNIFEIFIKTNYNIK
                     DLNEQHKGHIRNLISIFNNHILEPLGNIHLDELTLYKVQEFYNGMKNKGLEPKTYNRA
                     IKEVLSPMIRYAVKNKWINENVTLGLKLDRVQNKKLVTNPKGKYEAILNAILELYKDN
                     LLYKALFLLIHSGRRRDEVLSLLWQNVDLERKTIFLPKTKNGEAQEHALDDECYNALK
                     ALKDEVKQDKGLVFVSSVSGKKISNLARQEAKIRELSGVKEWTPHFSRHIKASFLMQN
                     GVNPAVISGALGHRDLSTINIYATNDTLKASQRANEALKKLQEKD"
     gene            complement(3074..3158)
                     /locus_tag="SFZ04_000741"
     tRNA            complement(3074..3158)
                     /locus_tag="SFZ04_000741"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3122..3124),aa:Leu,seq:tag)
     gene            complement(3163..3239)
                     /locus_tag="SFZ04_000742"
     tRNA            complement(3163..3239)
                     /locus_tag="SFZ04_000742"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3203..3205),aa:Arg,seq:tct)
     gene            complement(3254..3330)
                     /locus_tag="SFZ04_000743"
     tRNA            complement(3254..3330)
                     /locus_tag="SFZ04_000743"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3294..3296),aa:Arg,seq:tcg)
     gene            complement(3334..3410)
                     /locus_tag="SFZ04_000744"
     tRNA            complement(3334..3410)
                     /locus_tag="SFZ04_000744"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3374..3376),aa:His,seq:gtg)
     gene            complement(3435..3512)
                     /locus_tag="SFZ04_000745"
     tRNA            complement(3435..3512)
                     /locus_tag="SFZ04_000745"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3475..3477),aa:Pro,seq:tgg)
     gene            complement(3555..4403)
                     /locus_tag="SFZ04_000746"
     CDS             complement(3555..4403)
                     /locus_tag="SFZ04_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEG8065039.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMIEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIIPQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNVMKLKPHDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(4403..5065)
                     /gene="cgpA"
                     /locus_tag="SFZ04_000747"
     CDS             complement(4403..5065)
                     /gene="cgpA"
                     /locus_tag="SFZ04_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HEG8065040.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDHNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYIISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(5055..5258)
                     /locus_tag="SFZ04_000748"
     CDS             complement(5055..5258)
                     /locus_tag="SFZ04_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065041.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(5324..6568)
                     /gene="eno"
                     /locus_tag="SFZ04_000749"
     CDS             complement(5324..6568)
                     /gene="eno"
                     /locus_tag="SFZ04_000749"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEG8065042.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            complement(6568..7599)
                     /gene="recA"
                     /locus_tag="SFZ04_000750"
     CDS             complement(6568..7599)
                     /gene="recA"
                     /locus_tag="SFZ04_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEG8065043.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            7706..8566
                     /locus_tag="SFZ04_000751"
     CDS             7706..8566
                     /locus_tag="SFZ04_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HEG8065044.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILDFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDVIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDYLI
                     PSEYEEARNS"
     gene            8578..8847
                     /gene="fliQ"
                     /locus_tag="SFZ04_000752"
     CDS             8578..8847
                     /gene="fliQ"
                     /locus_tag="SFZ04_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEG8065045.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            8844..9620
                     /locus_tag="SFZ04_000753"
     CDS             8844..9620
                     /locus_tag="SFZ04_000753"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEG8065046.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQIYDFDGFLIGGANNLLVSPK
                     PKNIGILGDSFDFIQILDRNKDFIHLRIGCKTKSSKMYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRANINFDYRFCPLNTHFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGINLENEVIII"
     gene            complement(9628..10392)
                     /locus_tag="SFZ04_000754"
     CDS             complement(9628..10392)
                     /locus_tag="SFZ04_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065047.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLRLDWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVASVNFKIISTSNGKILAAKNAKLNL
                     ILKDQDTKQNYQDIVNQMPKMLASVIDNEIKKLKIY"
     gene            complement(10432..11196)
                     /locus_tag="SFZ04_000755"
     CDS             complement(10432..11196)
                     /locus_tag="SFZ04_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HEG8065048.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYNPLSYKSNPFICVSSRNFLQDFL"
     gene            complement(11276..12544)
                     /locus_tag="SFZ04_000756"
     CDS             complement(11276..12544)
                     /locus_tag="SFZ04_000756"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEG8065049.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(12659..13834)
                     /locus_tag="SFZ04_000757"
     CDS             complement(12659..13834)
                     /locus_tag="SFZ04_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG8065050.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAVIVMSMIKFLSNSKK"
     gene            complement(13815..14651)
                     /locus_tag="SFZ04_000758"
     CDS             complement(13815..14651)
                     /locus_tag="SFZ04_000758"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEG8065051.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLKYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLNADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(14653..16755)
                     /gene="topA"
                     /locus_tag="SFZ04_000759"
     CDS             complement(14653..16755)
                     /gene="topA"
                     /locus_tag="SFZ04_000759"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEG8065052.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
BASE COUNT         5370 a         3008 c         2349 g         6119 t
ORIGIN      
        1 aatatggctc tattttatca ttaatggctt cttgacattc tctttctttt tcccatttta
       61 tcgccacttc aaaatcagct ttaaaacttg gtaacatcgc ttattttact ctctttttcc
      121 catttaacca cttattaaaa taaacttaaa ttaaagccat taatagtaag tttcttttct
      181 ttttttaact ttacttttgt attttctatt tttgccattg ctttaatgac ttttgccaaa
      241 tcatcgctta cattttctaa aatcaagttc atttttaacc ccttaaagtg ttttaatata
      301 tgctttagcc gataccgcta gaaatgcact tcttgataag cccatttttt tagaataaaa
      361 atctatctca tctacaagac tattttttaa ggtaatagct agatttttac ttttgtcttt
      421 ttgtatgggc tctgggataa actcattttt agccaaagct tcttctaaat aacaagcaaa
      481 ggcatttttt aaatcttcta ttgcttcgtt tggtgtttta ccatctcctg ccattaagac
      541 aagtttatta agttctttat catcaaattg tgcgaaataa tcgccatcat caagttttac
      601 taaattaatc ttataaggca aattcaaata ataatttata tcttttttca tttttcatcc
      661 tttaaaagtt ttaatatttg ctttacataa aattctttta taggtttatg caaaggcaca
      721 ataatgcttt tattatcttt tttaaattta tgatgacttc ccctaatgct aactagttta
      781 taaccatacc aacttaaaag cttttctatg ttagcaaaac ttgcattttt ggggttattt
      841 tctaattctt tgattaactt ttctttgttg ttcatatatg tattatatat ataattatct
      901 taaaatattt taaatgcatt caaagccttg caaagtattt tatattttat taagtatttg
      961 tattttataa ttcttttaca ttcaaaggga ggctcaaccc ctattaagat aatctaacaa
     1021 atctttattt attaaacaaa tcaaatcatt taaaaagttt tctatcttat caggcattaa
     1081 acctatatta gtcccttttt cttttgtgct tatgcgtgga tataatttat tatcattttc
     1141 tctaattttt aaaagatttt caaaatgaca ggctctattc cttaaagtat gtagcaagtt
     1201 taaaactata ttaactttat ctatattatc aaagccttgt tttgtatttt cgtaaataaa
     1261 aaagtttcta ttactactgc tatacttcct aaaatcaaaa gcccttaaat ctaaaatctt
     1321 attttgcacc ttgtaagata tgattaattt agccactaca cctaagctaa ggcgtgataa
     1381 gatttgatga ggttttaaac tatctttatc tttaaactca tttattttag ccaataaaaa
     1441 ggattatcgc taatttttat ccattctttg caattactat ttaattcata atctagggca
     1501 tttcttagat aaatttcaag tattgctatt ttaggcatta tcttagatat taatttcaag
     1561 ttctcaaaat gttcgtttat atctttataa tgctctaatc tttgctttga aaagataaat
     1621 tctaaaccta acatttttaa tctttttctt gtagcttttt taaagcttca ttagctcttt
     1681 gacttgcttt aagtgtatca ttagtcgcat aaatatttat agtacttaaa tccctatgcc
     1741 ctaaagctcc actaataact gcgggattaa ctccattttg cattaaaaaa ctagccttta
     1801 tgtgccttga aaaatggggc gtccattctt ttactccgct aagttctctt attttggctt
     1861 cttgtcttgc caaatttgat atttttttac cgctaacact agaaacaaaa actaatcctt
     1921 tgtcttgttt aacctcatct tttaaagcct ttagtgcatt atagcattca tcatctaagg
     1981 cgtgttcttg tgcttcacca ttttttgtct ttggcaaaaa tatagttttt ctttctaaat
     2041 ctacattttg ccaaagcaaa cttaaaacct catccctacg cctaccacta tgtataagca
     2101 agaataaagc tttataaagt aaattatctt tgtatagctc taaaatagca tttaaaatag
     2161 cttcatattt acctttagga ttagtaacaa gctttttatt ttgcactcta tcaagcttta
     2221 aacctaatgt aacattttca ttaatccatt tattttttac tgcatatcta atcatagggc
     2281 ttagcacttc tttaatggct cgattatatg tttttggctc tagtcctttg tttttcattc
     2341 cattataaaa ttcttgtacc ttgtaaagcg taagctcatc taagtgtata tttcctaatg
     2401 gctctaagat atgattatta aaaatgctta ttagatttct tatgtgtcct ttgtgttgtt
     2461 cgtttaaatc ttttatgttg taattggttt ttataaatat ctcaaaaata ttttttatca
     2521 aaatgctaga atttaaagca tatccaacgc taaaaagctt tttaaactcg ttttcatatt
     2581 ctttagctct tgcaagtgct attcttatat attcgttttc attccacgca gggcgtaaag
     2641 gaatagtaaa agcgtgttgc ttttctttac ccccattttg cattctaaat aaaaaggagt
     2701 taattttatc tttgtgtctt tttaaatgtg ttccttttcc tatgggtata ttataatcct
     2761 tcctatcaat cgccattttt aaccttatta tttttgctat attatagcgt atttcaaagc
     2821 cttataaact taataaaatt atcttaggtt acctttactt tagggttagg acttattttt
     2881 acctttttta ccgctaaact taaatggatg aaaaggacta ttttatagct atcctttcat
     2941 ccggttacta ttaaaagtta cctgctaaaa ggttgccttt ttgaaataat tcgaaatgat
     3001 acaatgggac ttcaaaggct tcagcgtaat ttaagcaaaa tctctaaaag tatggtaaaa
     3061 tgggggttta gagtggtgcg gacgaaagga cttgaacctt cacgcattgc tgcaccagat
     3121 cctaagtctg gcgtgtctgc caatttcacc acatccgcaa agtggtacgc ccaagaggat
     3181 tcgaacctct gacctacggc ttagaaggcc gttgctctat ccagctgagc tatgaacgca
     3241 tataaaatct tggtggtgcg cccgatagga atcgaaccca taacctacag atccgaagtc
     3301 tgttgctcta tccagttgag ctacgagcgc tagtggggtg agtgatggga attgaaccca
     3361 cgaccctcag gaccacaatc tgatgctcta accgactgag ctacactcac cattttgtat
     3421 aaatttataa aaaatggtcg gggtgaaagg attcgaacct tcggcccctt ggtcccaaac
     3481 caagtgcgct aaccagactg cgctacaccc cgaataaata aaaggaaata ttttatcaca
     3541 aaataatttt aaagtcaagg attttcatct cttattctta aaaaaaccgg aaagcgaggt
     3601 aaggaatttt tggtcaatcc attaaattta taagtcacaa tgctaccaat ttttggagga
     3661 ttttttctat cttcatcttt taaaccactg cctattttaa tgatttgtcc attaggcatt
     3721 ttacaaagta aggcacctac ttgattttca aatttaccct tacccttgcg aaatcctact
     3781 aactcacact ctgcatcatc atggggtttt aatttcataa catttttact tctgcctttt
     3841 tcataaggac ttaaattttt gcgtatgaca ataccttcac cttgattttt tataatgctt
     3901 tcgtaaaatt gatttaaatt attttgattt tcaactggaa tttgaggaat aatttttata
     3961 taggcactag gatatttttg caaatactct tctaaaacag ccaaacgatt tttaagggtg
     4021 caagtagaaa tttgaaattc ttcgcaagca tttggcacat caaaaatatt ataagttact
     4081 tccttccata aggtcaaatt actatcgcca ctacgaatta aagctgaaat ttcatcaaat
     4141 ttatttcttg ctatccaaag ctcaccatca atagcaaaag gagggaaatt ttttgtaaaa
     4201 aagtcaggag tttttatttt gtaattttgg cgagttttta gatatttccc atcccaaatt
     4261 ccacgcactc catcaagttt ttcgatcatc aaataagcat taaaatcttt agagttaaaa
     4321 tcttgcttat cgaatttgct aagaagtaaa atttcattag caaaaactaa acaagcacaa
     4381 catattaaaa aaacaaacct catcaaagca gattaatcat atatccagtt gcatcttttt
     4441 gaatattata attataagtt ccatcaagat atattacaag tcgataatat cctttatgag
     4501 atccaaagtc tatgcgttta aaaatagaat tgctaaggcg tatgtttttt gtagggctaa
     4561 tcattttaga tctaaaatct ataacgattt tacttggatt tcctactgaa aaatctgtaa
     4621 tcatttcatc actagtgtta agttttattt tatttttata aaccgcataa gaaataaaat
     4681 cataaatctt tgcaacctgt aaaggtattt caacattggc tgttgagttt gattcttgtt
     4741 tggagctatt tttttcaggt atagtaactg aaacatcgag tacttttgaa ggatcaggac
     4801 ttttaaatct tgatataata taagtatcgt gccaatcaat acttttattg acatctaaat
     4861 cgatcttatc ttcacttccg tctaaattga tataattaaa agtgatgctt tttaaaattc
     4921 ttgcactaga attaaattta acttcctctt tttgaaattc aggtggagca accaaggtta
     4981 tattgtgatc tgtcttaaaa ggattttcat cagcatataa aagagaggta aaaataaaaa
     5041 atattgccaa aattctagtt ttcatttggg tataatcctt ttaattcaaa ataatctttt
     5101 tgtgctttag cattttgttc tttgagcaaa ataatctttt tattaagctc ttctttggta
     5161 ttttctaagc ttaataaagt atctaaagaa tactgcccaa aaaacatatt gccaaaataa
     5221 atcgctccaa ttacaacaag aaaagcccaa aaaatcattt ttataacatg ggtataaaaa
     5281 cttttttttc ttgtgctttc gtcgtattct ttaagtaaat cgctcagagc ttttctccta
     5341 agtattcatc gctttcaagt tcaatttcaa gcaagcgatt gtattttgcg gttctttcac
     5401 ctcttgctag ggctcctgtt ttgatttgtc ctgtatttaa agccacagca aaatccgcta
     5461 taaaagcatc ttcactttcg ccgcttctat gactcatcac acatttatag ttatttcttt
     5521 gcgctaaacg cacagttctc atagtttggg taatagttcc gatttgattt ggtttaataa
     5581 gcacagcatt tgccattttt ttgatgatgc cttctcttaa aatatcttca ttagttacaa
     5641 acaaatcatc gcctacaagc tgaattttat tgcccaattt ttcagtaagc ttaatccaac
     5701 cttcaaagtc attttcagct aagccatctt cgatactgca aattggatat tttgcacaaa
     5761 gttctacata gcgttcgatc aaatcctcgc ttgaaaaagc cttgccttcc atgtgatatt
     5821 tgccatcttt gaaaaattct gtacttgcca catcaagagc gatttttaca cgattttcat
     5881 aacctgcttt tttgatacaa gtcattaaaa gatcgatagg ttctgtgttg ttagctaaat
     5941 ttggagcaaa accgccttca tcacctaaag ccgtagaatg tccagaattt gcgagttctt
     6001 tttttaatat cgcataaatt tcacaaactg aacgcaaagc ttctttaaag ctagtaaaac
     6061 caaaaggcat gatcataaat tcttgaaaat ctacattgtt gtttgcatga gcaccgccat
     6121 ttatgatatt acacattggc acgggtaaaa tgctcgcatt tgcaccacct aagtagcgat
     6181 ataaaggcat tcccaaagca gctgcagccg cacgagctgt tgccatagat acgcctaaag
     6241 tcgcatttgc acctaaattt gagtaattat ttgttccatc aagctcacgc aaagtatcat
     6301 caagttgagt ttgattaaaa gcatctagtc ctaaaatttc atctgcaatg gtctcattga
     6361 catttgcaac agcttttaaa acgccttttc cgccaaatct ttcatcatta tcacgcaatt
     6421 ctaaggcttc ttttgaacct gtacttgcac cacttggaac tatggccgca cctacacttc
     6481 catcgcttag cgtaacttcg gcttttacgg ttggatttcc tctactatca agaacttcat
     6541 aggctctaac atcttcaatt actaacatta ttcttctcct tcgtcatctt cgctaccgct
     6601 gatcatacct tctattccca tagaattttg aattgctttt gtgatttcat ctgcaatttc
     6661 agggttttct tttaagaaag cttttgaatt ttctctacct tgtccaagtt ttttatcttt
     6721 ataagaaaac cacgcaccac ttttatctac gatatcaagt tttacaccat aatcgatcaa
     6781 ttcaccttca cggcttaaac cctctccaaa catcacatca aattcagctt gtctgaatgg
     6841 aggagcaact ttatttttaa ctacttttac tttaacgcgg tttcctatag gttcttcgtt
     6901 ttgttttaag gttgctactt ttctaacatc taaacgcaca gaagcataga attttaatgc
     6961 atttccacct gttgtagttt caggagtacc ataacccata gcaccaattt tcatacgaat
     7021 ttggttgatg aaaattactg tggtattcat tttatgaact atacctgtaa gttttcttag
     7081 agcttgagac ataagtcttg cttgaagtcc tacatgttga tcgcccatat cgccttcaat
     7141 ttctgctttt ggagtaagtg ctgcaacgct atctactacg ataagatcta ctgcgccact
     7201 tcttgctata gtttctacaa tttctaaggc ttgttctcca aaatcaggct gagaaacata
     7261 caaatcatct gtatttacac ccaaattttt agcatatttt acatcaagcg catgttctgc
     7321 atcgataaaa gcacaaactc cacctgcttt ttggcattct gcgataatat gtaaagttag
     7381 agtggtttta cctgaacttt caggtccata aatttctata attcttcctt ttggaacacc
     7441 gcctatacct aaagcaagat caagcccaac tgaacctgtg cctatgctat cgatttgctc
     7501 gacttcttta tcccctagtc ttaaaatagt gccttttcca aaggttttat ctaaactttt
     7561 tagggcagcg tctagagatt ttcttttatt atcatccata actttcctta aaaattctaa
     7621 atttttagtt agaattctaa caaaataaaa ttaaataatg atttattttg ctagaattaa
     7681 agcaaagatt tacaaggaag catagatgaa aaaaattact attgcacatt ctcctgatgc
     7741 tgatgatatt tttatgtata tggcaattaa atttgggtgg atagggaatg attttgctta
     7801 tgaaaataca gctttagata tacaaacttt aaatgaattt gccttgaaaa atgaatttga
     7861 tgctacggct atttcttttg ggctttatcc tttaatcgct tctgagtatg cacttttacg
     7921 cacagcagtg agttttggtg aaggttatgg gccaaaactc atcaagaaaa aagacacgca
     7981 tttaaaaaga aattttaaag tcgctttgag tggagcaaat accaccaatg ctttgatttt
     8041 tcgcatgaaa tatcctgaag caagaattat ttataagaat tttttagaca ttgaaaatgc
     8101 ggttttaagt ggcgaagtag atgcgggagt tttgatccat gaaagcattt tagattttga
     8161 tcaaagtctt tacgtggaag cagaactttg ggatatatgg cttgaatttg ctaaagaaaa
     8221 tttgcctttg cctttaggtg gaatggcttt gcgtcgttct ttacctttaa gcgacgtgat
     8281 taagatcgaa agagatttaa ccaatgctgt aaaaattgcc gatgcaaatc gtaaaatttt
     8341 agcccctatg cttatggaaa gaaaacttat ccgtgttgat gaagaaaaac ttgatactta
     8401 tcttaattta tatgccaata aaaactctat tagcatgaat caaactcaac ttttagctgt
     8461 agatacgctt tttaaactag gatatgatta taaattttat gataaaatca tacatgtaaa
     8521 tgattatctt atccctagcg aatacgaaga agctagaaat tcttaaaaag gataaaaatg
     8581 gacgaaagta ccttagttgc tcttggagtg caaaccttta aaatcacact tttactttcc
     8641 ttgcctatgc ttttagcagg acttattgca gggcttgtga tcagtatttt tcaagcaact
     8701 acacagatta atgaaatgac actttctttt gttcctaaaa tcatcttggt tgtggttatt
     8761 ttaatctttt taatgccttg gatgactaca actatgattg attttactga gaatatacta
     8821 aatcaaattc caacttttat caaatgatca ttgattttaa aaaatactct tctgtgcgta
     8881 taggaaatga atttgaagtt ttagttttgg atcaaattta tgattttgat ggttttttaa
     8941 taggcggcgc aaataacctt ttagttagcc caaaacctaa aaatatagga attttaggag
     9001 atagttttga ttttatacaa attttagatc ggaataaaga ttttatacat cttcgcatag
     9061 gctgcaaaac aaaatcaagc aaaatgtatc gctttgccaa agaaaacaat cttaagggtt
     9121 ttgagtattt aagcaaaatt cctggtacac ttggcgggct tttgaaaatg aatgcaggac
     9181 ttaaaggaga gtgtatcagt caaaatttaa tcaaaattgc tacttctcaa ggcgaaattc
     9241 taagagcaaa tataaatttt gattatcgtt tttgtccttt aaatacgcat tttttttggg
     9301 ctgaatttaa actaaacttt ggctttgata cccttaaaga tgaagcttta aaaaatgcaa
     9361 gaagcaacca acctagtgga gcaagctttg gctctatctt taaaaatccg aaaaacgact
     9421 ttgcaggacg tttaatcgaa gctgtaggac ttaaaggatt tagcaaggga gatgctatgt
     9481 taagcgataa acacgcaaat tttttaatta ataaaaaaaa tgcaagtttt gaagatgcgt
     9541 tttttcttat cgaattggct agaaaaaaag tctttgaaga atttggcata aacttagaaa
     9601 atgaagtgat tattatctaa aaatttttca atatatcttt aattttttta tttcattatc
     9661 tataacacta gctaacattt ttggcatttg atttacaata tcttgataat tttgttttgt
     9721 atcttgatct tttaatatca aatttaattt tgcatttttt gctgcaagaa tttttccatt
     9781 gcttgtagaa ataattttaa aattaacact agccacaccc tctttactag ttgtgataaa
     9841 ataatttgta atatttacat aaaaatcttg caaatttacc accacaacat aatctgtaaa
     9901 tttggcatac attttagcct tatctttttc ttgtgttaaa aaaggactta catttataag
     9961 ttttgcatcc ttagggctaa aatatgacaa agttttagga ctttgataaa taccatttgc
    10021 agcagaatta acccaatcaa gccttaaact ttgaatcaaa tttttagcaa ataatgtaga
    10081 aaattcctta tcactcaccc taaaaccatc taaaaaataa ccaaaatttt tcctagaagt
    10141 taatacaata gcaaaatcaa tatccttatc tttggtgatt tgcgattttt tttcaattaa
    10201 agtagaacta tcaaacaatg ctttttgttg atttagattt ggatttgcaa cattttgatt
    10261 tagatctatt acttcaaaac tatctgcgct tttttcaatt ttaataactt ttttctgaga
    10321 aaaattattc gctaaaagat tagaacttaa aactaaactt aaaaacaaaa tgaaacaata
    10381 cctcatcttc atccttataa actatttaaa tataaaatta tactctttat tttataaaaa
    10441 atcttgtaaa aaattcctag atgaaacaca aataaaagga ttggatttat aacttaaagg
    10501 gttatataaa atgtattttt tagaaaaatc gcccataaat cctccatttt gattaatcaa
    10561 aaaatctcct gctacaatat cccaaatatt aagcttttca aatcttttat aaactcctgc
    10621 cctagcctct aaaatagcac aaaatttcaa tccagagcct atattaatag cttctaattg
    10681 atgctctttt gcaaagtctt catcttcttt gctaagatga ttaacactca ataaggcttt
    10741 atatttattt ttctcgtatt cttgctggtc aatttgcaaa ggtttatcgt ttttataaac
    10801 cttggttttt gcatgagcat agaatatatc accttttgat ggattttgta tgagtgataa
    10861 aacagggcga ttgtcatgaa ccaaacttat cataacgcaa aattcatcac tgccttttaa
    10921 aaaaccactt gttccatcaa gaggatcgat aagccaaaaa gtttttaatt cttcacactc
    10981 ttctttgctg agtaattttt cttctgatag aattttaata tccgtagaac ccaaaatatc
    11041 atttagaatt ttattagaag caagatctgc tgatgtaagc gggcttttat cttctttttc
    11101 ccaagttttg aaattttttc tctcttctaa aatagcttta gaagcttgat tgctagcatt
    11161 tatagcaatt tctaaaaatt tatcaagatt aagcatgatt ataaactttc tataagattt
    11221 tttaaaatta tacaagaaga ttttgtggaa tttttaattt ccacaaaaat tttaattaaa
    11281 ttttactagt ttcacccaaa taaagttgtc ttggacggac tattttaaga ctttcttgct
    11341 ctttttgttc tatccactga gctatccatc ctggggtgcg ccctataaca aataaagtag
    11401 caaacatttc atttggaata cctaaggctt ttaaaataag tccactatga aaatcaacat
    11461 tcggatataa ccctctttga acaaaataat catcgcttaa agcaatctct tctatacgcg
    11521 ttgctacttt aataagattg gtatcaatac ccaactcatc aataagttga tcacgaagct
    11581 ttttcagtac ttttgctcta ggatcaaaat ttttataaac cctatgccca aagcccatca
    11641 agcggaaagg atcgttttta tccttagctc ttttgatgaa ttcatctacc ctatcaacac
    11701 tacctatttg ctcaagcatt ctaataacac cttcattagc tccaccatgt gcatgacccc
    11761 aaagcgcacc aatacctgct gctatacagg cataaggatg agcatgagtt gaacccacag
    11821 cacgaactgt tgaagttgaa gcattttgct catgatctgc atgaagcata aaaactgtat
    11881 caagtgcttt tacttctata ggtttaagct ctacatgatc gtaaggatag gttcttaaca
    11941 tatataagaa attttctgta aaaccacgat ctaaatttgg ataagccata ggaaagccgt
    12001 gtttatatct ataagcggtg gccactatag tagggatttt agctactatt ctagctgcca
    12061 tttccatata ttcttctttt acattcatgt ttaaatgatc aggataaaaa gcactaagcg
    12121 atgaaacagc accttgtaaa actgccatag gatgagcatt atcagggaaa gaatcaaaaa
    12181 gacggtgcat accttcatgg ataaaagaac gttttttcat ttcataacga aacgcttcaa
    12241 gacgcgtagc atcaggtagt tctttataaa gtaaaagatg aaccacatct aaataaagtt
    12301 tgttttcagc aagccactct ataggatagc cacggtgcat taaaattcca ttttctccat
    12361 caatataagt gatttttgat ttacaagtag ctgtagaagt caagccctca tcataagaaa
    12421 acattcctgt ttgtttataa aaacttgaca tatctacaac gcttggccca gttgtaccgt
    12481 catatatagg aaattcatag ctttttccat ttctattatc ggttatagta acggaatttg
    12541 acattttcgc tccttttatt gttactttta ttaattctaa caaaaaagga cgattatgag
    12601 tttttttatt attaaatttt taagattttg tttgcttttt tgagtaaaaa agtaactttc
    12661 attttttaga attagaaaga aatttaatca tactcataac aataacagcc tcaaataacg
    12721 ctgttaaaat aagcgctgaa taaagtttct catcaataac cttgcccgaa taacccagag
    12781 tagctgttgc tataagcaag gttaaaggca tagaatgact aagaccaaat aaaatcatat
    12841 ttttaaaacc aattcttttt aaaaaaacac ttgcacataa aattcttaaa cccaccataa
    12901 caaacataag taaaaatgct tgtaaaacga ttttataatc taaaatcatt ttaagatcaa
    12961 aggttgaacc tatatggata aaaaaaatag ggatcaaaaa cccatgtcca aaagtagaaa
    13021 gcttatgctc aagatctttt ttatgatcaa aaaaagtagc tataaatgag cctgctataa
    13081 aagaaccaag aacgatttca agttttgtaa taaccatagc aacaatgatc agtataaaaa
    13141 tggccataca aaatcttata tctttttcat ttttatcctc ccatggcata agcacaactt
    13201 taagctgagg ataccaccaa aaaagcacac caagcatttt aaatccgagc aaacaaagtc
    13261 ccaaaaagat attaagatat aaaatacttt gcgctacatc aataatacct gttccttcgc
    13321 gcaaaaaagc tcccgctata gtcaaaagca caatagaaat cacctcagct aaagtagcca
    13381 ctatcatagc aatatttagc caataacact cttttccaaa atccttaaaa agcaaagata
    13441 aaagccctac actcatcaca ggtataatga taacaaatac taaagaaagt ccaaaaatcc
    13501 atactataag agaagataaa gcgtaaagta aaaaaatata aaaaaaactt tttttggcga
    13561 cttctttatc catattaaaa aaggctctta aatttacttc catacctgct ataaacatta
    13621 gataataaaa acctacattt gctaaaagtg caaaattttc actttttcct atgaaaccaa
    13681 aatatgctat tattgcccct aaaataattt cagtagctga aagaggcaag cgtaaaattt
    13741 ttgcaatatg cggagaaaaa agtaagcata aagctataac aataagaatt tttagatcaa
    13801 ttaaaccttg tggatcaatg acactctgat gcaaaagtaa atcccatttc ttttaatttt
    13861 attatatctt gacttggttc ttcaccttta gtggttaaat aatcccctat aacaatagcc
    13921 ccagcacctg cttgaaaaat ttcatactgc ctttctcgca acaccacttc acgcccacct
    13981 gctaccatta ccacgctttg cggtaaagcc tctttggtat cacgaacaat ttttaaggct
    14041 tcatcagcat taagtcttgg aacttgtagt tttaaatttt catttgctat aaaaaaatta
    14101 ataggcgttg aaaaaggctg taattcttgc aaagattttc taaaacttag tctatcttct
    14161 tcactctcac ccataccata aattccacca caacaaagca taagtcctgc ttctttagcg
    14221 tttaaattgg tttgaaatct actttcccaa gtatgagtgg tgcaaatttg tggaaaaaat
    14281 tccttagaac tttcaagatt gtgattataa gaaaaaattc ctgctttttt aagttctttg
    14341 agttgttcca cgcttgccat accattacag gcaattaaaa gcaaattagg cacttctttt
    14401 tgcacagcct tagcagcctc acaaacatac ttaagctttt catcatcaag cccaagtcct
    14461 gctgtaacca aacaaaaacc caaggcttca tttttctttg ccattttcgc ttctaaaacg
    14521 atttgtgaaa gttctttacg acgatatttt tgaatatctg tttttacatg ggcactttgg
    14581 gtgcagtatt tacagtcttc tgaacaattt ccactcgcta tatttgaaat agcacaaagc
    14641 atgatttgca ttctaatcct tcatttcttt tttgattttg cactttaagc attctaagaa
    14701 tgtacctttt ttaagctctt ttatcactaa agtttcgcca cactcttcgc atttttcttc
    14761 acttggtttg tatttgctta taaaattgca ttttggataa gcactacaac cataaaattt
    14821 accgcgtttt gaaaagcgtt ctacgatttc acctttttga caacttggac aagtaatgcc
    14881 tgtaccatta gctttagctt ttgcggctgt attttcgctt tcgtttttgc tttcactttt
    14941 taaatttctt gaatacttgc attttgggaa atttaaacac gctacaaatt ctccaaaacg
    15001 cccttttcta atagcaagct ctccgccaca atcaggacaa ctttcgccta gttttgtgac
    15061 agttttttga ctagctattt ttgtttttcc ttcttcgatt tttctcataa aaggatagta
    15121 aaattctttt aaagtttctt gccaatctgc cttatcttct gcgatttcat ctagggtatt
    15181 ttcaaggttt gaagtaaatt tactatctac tatatcgcta aaatttttct caagcacttc
    15241 ggttacatta aaagcaacat cgctaggaat gagttgtttt ttatctattg ttacataatc
    15301 acggcttgta agtatagaaa tggttggtgc ataagtagaa gggcgaccta tgcctaaact
    15361 ttcaagtttt tttacaagtc ctgcttctga ataccttgaa ggtggttcgg taaaatgtga
    15421 gttcatttct aaattttgca cttttaaatt ttggcctatt ttaaaatttg gcaaaatttt
    15481 atccttatcc atatcaccat aaactttata atatccatca aaaaggattt ttctaccgct
    15541 tattttaaaa actgctctat cattttttac aaatacattt tgagtttgag agatagcagg
    15601 actcatctga caggctaaaa agcgattgta aataagtgtg taaagtttta actcatcttt
    15661 gtctaaaaat ttagccgcaa tttctggagt aaaacttaaa tttgtagggc gtatagcttc
    15721 atgagcttct tgagcgcctt tagtctttgt agtatataca tttgctttgc ttggaagata
    15781 gtctttgcca aaatttgctt gtatgaattt tcttgcattt tctactgctt ctttggctaa
    15841 atttaaacta tcggttctca tataagtaat aacccccatc acgccttcat gggtatttac
    15901 tccttcatag agcttttgag ctatcatcat ggttttttta gggttaaaac caaggcgatt
    15961 gctggcactt tgttgtaaag ttgaagtcat aaaaggaggc ggcggagcga tttttctttc
    16021 tttgctttca atgtcactta tactataaac ttcattttta caagcttcta gtataagttt
    16081 agcacgatct ttgttggtaa tggtaagttt ttctatcttg gctttatcaa actcaactag
    16141 ttctgcatct aaatcttttt gaaaaatcat atcaatacta aagtattcta ggggtacaaa
    16201 ggcacgaatt tctttttcac gatcgactat gatctttaaa gccgcacttt gaacacgccc
    16261 agcactaagt cctctttgaa ttttttgtcc taataaaggg ctgagcttat accctacaat
    16321 gcgatctaaa agacgtctgg tttgctgagc atttacagag tgcatgttta attttcttgg
    16381 attttttaaa gcattttcta tagcgctttt agtgatttca tgaaaaacaa tgcgtggtaa
    16441 ggtgttttca tcttttccta tagcttttgc aatatgatag gctatagcct ctccttccct
    16501 atcttcatcc gttgcaagat agacttcttt ggcatctttg gctttgcttt taagttcttt
    16561 aactaaggcg ctatgatcac ttgtgattct atactcaggg ataaattcat catcttctat
    16621 tttaatccca aagcttgatt taggcaaatc tctaatatgt cctttagaag cgataacttc
    16681 ataatctttt cccaaaaaat ttcctatggt tttagctttt gcaggagatt ctactatgat
    16741 taaatttttc ttcattttgc acccttgtta aataaaaagc tgaatttagc taaaaatatt
    16801 taaaattcta cttataaaat atattttaat caagctaaaa tatttt
//
LOCUS       DARGBD010000027        16840 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.027, whole genome shotgun sequence.
ACCESSION   DARGBD010000027 DARGBD010000000
VERSION     DARGBD010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16840
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.027"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..524)
                     /locus_tag="SFZ04_000760"
     CDS             complement(<1..524)
                     /locus_tag="SFZ04_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEG8065053.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDKDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNY"
     gene            complement(534..1007)
                     /gene="folK"
                     /locus_tag="SFZ04_000761"
     CDS             complement(534..1007)
                     /gene="folK"
                     /locus_tag="SFZ04_000761"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEG8065054.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            complement(1010..1489)
                     /gene="aroQ"
                     /locus_tag="SFZ04_000762"
     CDS             complement(1010..1489)
                     /gene="aroQ"
                     /locus_tag="SFZ04_000762"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEG8065055.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            1580..2809
                     /locus_tag="SFZ04_000763"
     CDS             1580..2809
                     /locus_tag="SFZ04_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG8065056.1"
                     /translation="MFIVAARYLFLCDEDFTILENQAFVFEDKILELGELDNLKKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSILNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLASTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            2797..3693
                     /gene="sppA"
                     /locus_tag="SFZ04_000764"
     CDS             2797..3693
                     /gene="sppA"
                     /locus_tag="SFZ04_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEG8065057.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILIPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELGNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            3772..4803
                     /locus_tag="SFZ04_000765"
     CDS             3772..4803
                     /locus_tag="SFZ04_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HEG8065058.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLYADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(5045..5395)
                     /locus_tag="SFZ04_000766"
     CDS             complement(5045..5395)
                     /locus_tag="SFZ04_000766"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065059.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFEIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(5371..5664)
                     /locus_tag="SFZ04_000767"
     CDS             complement(5371..5664)
                     /locus_tag="SFZ04_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HEG8065060.1"
                     /translation="MLLDKLIPTWNEYSIHDTMIDIQHQKLCELASKVESAVYKFVKR
                     EELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
     gene            complement(5838..6494)
                     /locus_tag="SFZ04_000768"
     CDS             complement(5838..6494)
                     /locus_tag="SFZ04_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HEG8065061.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYGFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
     gene            complement(6487..7926)
                     /locus_tag="SFZ04_000769"
     CDS             complement(6487..7926)
                     /locus_tag="SFZ04_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HEG8065062.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            complement(7923..8663)
                     /locus_tag="SFZ04_000770"
     CDS             complement(7923..8663)
                     /locus_tag="SFZ04_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8065063.1"
                     /translation="MMKKVYFYATCLGSAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVSSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            complement(8787..10469)
                     /locus_tag="SFZ04_000771"
     CDS             complement(8787..10469)
                     /locus_tag="SFZ04_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEG8065064.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            complement(10641..11210)
                     /gene="cdtC"
                     /locus_tag="SFZ04_000772"
     CDS             complement(10641..11210)
                     /gene="cdtC"
                     /locus_tag="SFZ04_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HEG8065065.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(11221..12018)
                     /gene="cdtB"
                     /locus_tag="SFZ04_000773"
     CDS             complement(11221..12018)
                     /gene="cdtB"
                     /locus_tag="SFZ04_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HEG8065066.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(12015..12821)
                     /gene="cdtA"
                     /locus_tag="SFZ04_000774"
     CDS             complement(12015..12821)
                     /gene="cdtA"
                     /locus_tag="SFZ04_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HEG8065067.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAVNGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            12934..13167
                     /locus_tag="SFZ04_000775"
     CDS             12934..13167
                     /locus_tag="SFZ04_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HEG8065068.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            13168..14730
                     /locus_tag="SFZ04_000776"
     CDS             13168..14730
                     /locus_tag="SFZ04_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEG8065069.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            14730..15854
                     /gene="cydB"
                     /locus_tag="SFZ04_000777"
     CDS             14730..15854
                     /gene="cydB"
                     /locus_tag="SFZ04_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEG8065070.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFINNINDENIKIRAMKKLMINSILFL
                     PFFLGFLVWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAVLLAIGVILVLLGMFQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(16048..16743)
                     /locus_tag="SFZ04_000778"
     CDS             complement(16048..16743)
                     /locus_tag="SFZ04_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEG8065071.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
BASE COUNT         5448 a         2562 c         2746 g         6084 t
ORIGIN      
        1 ttataatttg gattaggggt gtaattttct aaaggtgtgt ttgtgacttt agaaatttca
       61 ttgctaactt cacttagttt ttctttgaaa tcatcaaagc ctagagtctt attttgatga
      121 gggttgattt tgttttgtgg aaaatcttga taggtttttt tagctaagtc attgtttttt
      181 acagtgttta aatttgtatt taagcgagtg tttgagaaat ccaagactac atctttatct
      241 tcttgaggga tttgagatct aattttttct tctgcaagag aggtagagga tggttttggc
      301 gagctttttt ttgcaggtaa agattttcct tgttttttta agtgttcttc atagtcgctt
      361 tcttctatgg ctaccataac ctcataaagc gcactgcgat ttaaggtttt aggacgaatt
      421 tgtttatttg ttataattaa agctttatct ccgtaatctt cttttacttt gggtataatt
      481 tgttctgtat cttcaacggt aaaagtatgt ataagttgtc ccatttatat tccttatatc
      541 atgcctaaag gcaaaattac actcactctt tctttagccc ctttatgagg cacctcacac
      601 cacttatcac gcttgacttt ttgtgaaaag tataaaagat ctaaatcaag cgttctagga
      661 gcgtttttga aagttctctt gcgtttaaat tttacttcat agtaaagtaa aactttcaaa
      721 agtgctcgtg catgcaaatt agtttgtatc aacataacag cattggtaaa atctttttgc
      781 tctttaaaac caaaggcttc atttatcaac ataggagatg tggataaaat tttaaatctt
      841 ttatcatcca tcattactcg aaaaagcata tcaaatcttt ttttttcggg ctctatattg
      901 cttcctaagc ctataagagc taaatattta aaagatcgta tattttgact aaaaaaagga
      961 aaaaaacgac ttttttcaaa gtgttttact ccttgaattt ttagcattat tatttattcg
     1021 tttgttgtgc ttgttgcatt gcgcgcaaat tttttatttg ttcgcaaatt tgaattatac
     1081 ccattaaagc caagtgatag ccaaaaggac caaaaccaac aatagttcca gaacatacag
     1141 gcgctataag acttttttga cgaaattctt ctctgcgata aacattgcta atatgtactt
     1201 caattgtagg caaagctact gctgcaatag catcgcgaat agctactgaa gtatgagtat
     1261 agcctgctgc attgataata attccatcaa ctgttccaag gcattcttga attttatcta
     1321 cgatttcacc ttcaaaatta ctttggaaaa agtcaagttc tacattattt tgcgatgctg
     1381 caagtttcat ttgctcgtga atttcttcca ttttcatagc accataaatt cccacttctc
     1441 ttacgccaag catattaaca tttgggcctt ggataatcat tattttcatg gatttaacct
     1501 taaaaattta tttttaacct tttattataa cattttaaaa ataaattttt gctacaatgt
     1561 aatttttgaa aggaaaatcg tgtttatagt tgctgcaaga tatctttttt tatgcgatga
     1621 agattttaca atactagaaa atcaagcctt tgtttttgaa gataaaattt tagaattggg
     1681 tgaattggat aatttaaaaa aaaaatatcc taaggctaaa atcatcaaaa cacctaaaaa
     1741 ttcggttatt ttacctgctt ttataaatcc tcacacacac ttagaattta gtgcaaattc
     1801 aacaacttta cattttggag aatttttaat ttggcttaaa agtgttataa attctcgttc
     1861 catattaaat gcacaggcca aagaagaatt aatacttcaa agcattaaaa aaatgcaaaa
     1921 aagtggtata ggcactatag gtgaaatttc aagttttggg agtgatttag atccttgctt
     1981 aaaggctagt cacaagggta tgcgtatagt attttttaat gaaattttgg gtacaaatga
     2041 aaatcaagtt gaagataaaa aacaagaatt tttaaaaaga tttgaaaatt ctttgaaatt
     2101 taaaaatgat ttttttatcc cggcaatttc gattcattct ccttattcaa ctcatcctag
     2161 tttggctcat tttgctcttg atttagctaa aaagcaaaat ttactagcta gtacgcattt
     2221 tttagaaagt aaggctgaaa atatctggct tagagagtct aaagggggtt ttaaaaaatg
     2281 gcttgaaaat ttcacacttc atcctaagcc tctttataca ccaaaggatt ttgttaaact
     2341 ttttaaagga gtaaggactc tttttacgca ttgtgtttat ctaaaagaat atgaatggtt
     2401 agataaaaat ttacattcta ttacacattg tgcattttca aatcgccttt taagtcaaaa
     2461 aagcttagat ttaaaaacgg ctttaaaaag tggattaaat atccatttag gaaccgatgg
     2521 acttagctca aatatttcat tgtctttact tgatgaaatg cgcgcgaatt tgcttataca
     2581 taagaatttt gatttattag agttagcctc taagcttttg caaatggtaa cactttatcc
     2641 tgcaagggct ttaaatttaa atttaggaga gcttaaaaaa ggtaaaattg ctgattttaa
     2701 cgtatttgag ctaggagaat gtgataaaaa gcaagctcct ttgcagttta ttttaaatgc
     2761 taaggaagtg gataaattat ttataaaagg aaaagaatgc aaattttaaa atcatttttt
     2821 aaggctttag gatgcggtat aaaatttatc aatacttatt ttaaaacctt tgttttattg
     2881 ttgattgtta tatggatttt aatacctagt gcaaattcaa gctctaatct tgcaaattta
     2941 gaacgcattg atttaaaggg tgaaattttt gacagctctg cggttttgga aaaaattatc
     3001 aatgctaaaa atgatagcaa tatcaaagga gtgctttttg ttatagactc tcctggtgga
     3061 gcttttgctc ctagcatgga actagctcta gctataaagg atttaaaaat taaaaagcct
     3121 gtgcttgttt atgcaagcgg aactatggca agtggaagtt atttagcagg agttggagca
     3181 aataaaattt tagccaatcc ggcaagtttt ataggctcta tcggtgtgat tatgcaagga
     3241 gctgatttaa gcggattggc taataaactc ggtattaaag aacaaactat tcaagcgggt
     3301 gaatttaaaa gtgctggaac ttttgcaaga gcttggaatg agaatgaaag aaatttttta
     3361 cagggtttaa ttgatcaaag ttatgatctt tttacaggtt ttgttgccaa ggaaagagca
     3421 ttagatctta ataaaaaaga tcaatgggca aatgcaagag tgtttttagc tgccaaggct
     3481 aaggagcttg gtcttataga tgagcttggt aattatgaaa atgctaaaaa ggagcttgaa
     3541 aaacttgcta atgtttcaaa tcctgtttgg aaagaagaag ataagattga taaatttctt
     3601 aaccgcctag aaggacaaac atcaagcttg ataagtaaaa gcttaatcga aatcgcttat
     3661 aaaactaata gcagttttat aaacgctaga taaaatatat aaatattttt atttaatttt
     3721 tgtaatattt ttatgcaata attatttata tcttagataa ggagtaaaat aatgaaaaaa
     3781 aatattgttt ttttcgaagt taaaggtggg agtgataaag gtgaagatgg ctatagaaaa
     3841 gataccatgc ctatggtaaa tgccttaaaa gctaagggtt ggaatgctga ggtgattttt
     3901 tttgaagtgg gtaaaaaaga tgaaatttac aaatatgtga aagaaaattt tgatggttat
     3961 gtttctcgca tcaatcctgg caatcttaaa gaagaaaatg agtattttga tatgttaaga
     4021 aaactttatg ccgataagct tgtaggcatg cctcatcctg atgctatgat aggttatggc
     4081 gctaaagatg cacttacaaa attagcagat actgatcttg ttccaagcga tacttatgct
     4141 tactatgata ttaagacttt taaagaaaat tttccaaaaa gtttggctaa aggtgaaagg
     4201 gttttaaaac aaaatcgtgg ctctacagga gagggaattt ggcgtgtgag tgtagagggt
     4261 aatgttagtg gagatagttt gcctttaaac acaaaaatca aatgtacaga agctaaggat
     4321 aatcatgtag aacatagaga gcttggggaa tttatggatt tttgcgagca atatatcata
     4381 ggtgataatg gtatgcttgt ggatatgact tttttaccgc gcattaaaga aggtgaaatc
     4441 agacttttaa tgctttataa cacccctgta aatgtagtgc ataaaaaacc agccgaagat
     4501 gctgatgctt tttctgctac gctttttagt ggggcaaaat atcgctatga taagccagaa
     4561 gattggaaaa ctttggtgga tatgttttta ggcgagcttc ctaaggtaag ggaaaaatta
     4621 ggcaattacg acttaccatt gatttggacg gctgatttta ttttagatac tgatgaaaag
     4681 ggcaatgata aatatgtttt aggcgagatt aattgttctt gtgtaggttt tacttctcat
     4741 ttagaacttg ctgatgaagt agcttcaaat attattaata ttgtaagtaa aactaaggct
     4801 tagtctttaa gcttaatgtc cattttatta ttgcaaaatg gacattcttt ttctattgtt
     4861 tttaagtttg agctatattc tatcgagaaa aaattttcac aaaatgagca ttttgtatct
     4921 ttggttagca taggatagga atagtcaaat ttatccaaaa taaaatattt tattttttta
     4981 tccttaaatt tccttctttg tctaacttat actttattta ttattttaac gcataaatag
     5041 ttaattagaa attttctgaa tattttttat aaaactgtat ggcttctttg cattttttac
     5101 atttaaattt tacgccctta agttgaattt tttgatgaat ttcaaatggt acatcatgca
     5161 tttgttctac gcattcgcat gtataaagat aaactgtatt ttcatcatct ttttcttctt
     5221 tgacttcttc aaagcttact tccccatcat cttcagaagt taaagaagat cttctgtatt
     5281 gttcaacttt cacatcttta tagagtatat gttctaaaag ccatttttta gaaactgtgt
     5341 aaagcttctc ttttaaatca ttagtggttt ttatgttttg tataagataa gacatatcac
     5401 gaatgatatt ttatgcatga ttttgtgttc atttaaataa ggataatgaa tttcttgcat
     5461 ataatcttct tcattactaa aatgttcttt catatagtta aaaagttctg ttaaaatttc
     5521 tttgagttct tctcgtttta caaatttata aacagcactt tcaaccttgc ttgcaagttc
     5581 acaaagtttt tggtgttgaa tgtcaatcat tgtgtcatga atactgtatt cattccaagt
     5641 tggaattagt ttatctaaaa gcaccttctt taatttttgt atttaaaaat taatttaata
     5701 tatttgagtg aaatattaca taatatttta ttaaaatatt attaattaga aattatttat
     5761 tttatttata tttgtataat ataaaaaata tatataatta atattaaaaa ttaagactta
     5821 ctgattctag tatagaatca gtaaataata atatgtgcaa tttgtggccc atgaacacca
     5881 aaaacagtga taagttctat atctgctgtt cttgaaggcc ctgctataaa taagatatta
     5941 gtaggtaaaa tttcattttc tttttttact aaatttaaag cttcgctaag acttttaaca
     6001 acattttctt ttttaagcaa tactatgcaa agtttaggtg caaggcttag cattctaggt
     6061 tgggttttac ttgaaggtat aagtgcaact ccgtgagagc ttacccctgc tcttgcgtga
     6121 atgatggaaa aatcactatg aaaaacttca gatcttaaat tttcgatttc tttatcaaag
     6181 caaatctttt tttctgcttt gatttgttct aaatttaaat ttaaatccgc tccataaatc
     6241 atacttttaa agccatattt tgcgacaatt tcattgattt tttcttctaa ggtatctttt
     6301 gtagcatttt caacgatgta tttgttatcg ctcatttttt gcttcatttc tgtaagcata
     6361 tcttgggttg tctggatatg ttctacagga tctatacttt caatgcgtgt gaaagttgtt
     6421 tctttgtaag cttttttaag atgttctaaa atatttgctt tgcttttgct tgaaatttca
     6481 tcgattttac tcatagctta ctccttctag tttttgcact tctttataaa gatccatttt
     6541 aatttgaggt aattctttaa aagcgtacca ttttttaatc acaggcaaaa tgcttgcgaa
     6601 attttgtacc gtccagttga aataatgtgc ttttgaaagt gaaaaacgcc atttatcgcc
     6661 attggttgcg atatttttaa attgtttaaa agcaaaggct tctagggcat tgtgatgaac
     6721 attatttgct cctaaaggtg gatttttacc ttgtcctatt ttatcacatc ttaatttgcg
     6781 aataagatca gccaaaggaa tttggactgg acaaacttca gaacaacgcc cacaaagtga
     6841 acagaaattc aaaatatctc ctgtatgatc tataccaaaa atattaggac tgattacttc
     6901 tcctataggt cctggataag tggtttgata agcatgtccg ccgatttgat cataaacagg
     6961 gcaaaaattc atacaagccc cgcatcgaat acaacgcaaa gcctcataat aatcctcatg
     7021 agctaacatt ttagagcgat tgtgatcaaa taaaatcaca tgtacttctt taggaccatc
     7081 taaatctcca ttttttctag ggcctgtaat gatattgtta taagttggta taaattgtcc
     7141 tgtggctgaa ggagtaagta aagaaaccat agtagccgca tcttcaaagc tttccatgac
     7201 tttttctata ccacaaagtg cgatatgaat atcaggtgct gtagtgcaca ttctaccatt
     7261 tccttcattt tctataagcc aaaaagctcc ttctcttgac atggcaaaat tgaccccact
     7321 aagtccaagt tttaagcctt caaaatcttt tcttaaatgt tctctagcca ccgcatttaa
     7381 actttcgggt tcatcgtttt ctaaatttgc tcctaatttt tctttgaaaa tttctccgat
     7441 ttcatggcgg tttctatgta tggcaggtac aactatgtgt aaagggggtt cttcattaag
     7501 ctgtaaaata agctctccaa gatcggtttc tatagctttt aaaccttttt tttctaggta
     7561 gtgatttagg cctatttctt cacttgccat agacttgcct tttaaaagct tggtgatatt
     7621 tttttctttc atgatttcat agacgatttc acaggcatct tcatcactac ttgcccaatg
     7681 caccttaatg ccattttttg tagcattttt ttcaaattct aaaagccttt cttctaagct
     7741 cattaaggca ttatttttag cttgcttagc tttagctctt aagccctgcc agtctttaaa
     7801 tctagcatca ataacattga gtctattttt ttgcaaagta tgcatggcag tcattaaatt
     7861 ttcttgcatt tgtttgtcat tgagtttaat ttgaacgatt tgttcgtgag gaattttttg
     7921 actcatagtc tctctccttc taagcgttta agtaaaaagt catataaatg tatgcctttt
     7981 atatccaaac ccattctttt cattgtgcca tctatattta aaagacaacc tccatcacca
     8041 ctgatgagat attttgcacc gctattttgt atatctttga ttttgcttct taccatagca
     8101 tttgaaattt caggctcttt tactgaaaag gttcctccaa aaccacagca ttcttcttcg
     8161 tattgaagtt ctactaattc tacgtttttt agttttttga taagattttt actcgcttgt
     8221 atgctttttt gcactcttaa agcatggcaa ttagaatgcc aagttacttt tataggtgca
     8281 cctttatctt cataatctac ttttaaaact tcatcaaggt attgtgaaag ttctatcact
     8341 ctagagctaa aagtttttat tttggaaaat tcaggtctgt ttttaaaaag ctctttatag
     8401 tcatgactca tcatacccgc acaagaacca ctggatacaa cgatgggata atctttatca
     8461 aataaatcta cattatataa agcgatctca cgactttcat cgaaataacc tgagttaaaa
     8521 gaaggttggg cgcaacaggt ttgatttttt ttgaaaatca cttcaatacc ctcacgcctt
     8581 aaaagtttta tcgcatttaa aacgctttgt tgcatagcag cacttcctaa gcatgtggcg
     8641 taaaaataca cttttttcat catttttctc cttttaggat aatttaggat aaatattcta
     8701 atcctgtaaa aataaaagca aagtaaaatt tctaacaaat attctaaaaa cgaatatttg
     8761 ttgaaataaa acttaatttt ttttaattat ttcactataa cttcagggat gattccttgt
     8821 aagaaaaaag ctataatgca agtccaaatt cctattaaaa taataaaagc tacagaatat
     8881 tttaatgtga atttgaaaag atcagattct tttcccacaa gtccaaccgc tgcacaagct
     8941 atagcaatgc tttgtggact gatcatcttt ccaacaaccc cacctactga attagctgct
     9001 aaaaataaag cttcgctaat acctagtttt tgagcgctta cttgttgcaa ggttccaaaa
     9061 agtaaattag cacttgtatc agagcctgtt aaaaataccc ctatccagcc aatgattggt
     9121 gaaaagaaag aaaaagcatc acctgtgtgt gcaaaagcaa gtcctaaagt agtgctcata
     9181 ccactatttt tagagataaa agcaaaggcc acaaccaaac ctatggtgat acaaggtata
     9241 gccatttctt ttaaggtaac ccaaaagcat tctgcagcat cttcggcttt gatttttaaa
     9301 atagctatag ttagaaaagc ggcaagtaaa atcgctgttc ctgcttgagc tacggttttt
     9361 ccattgatta aatctacacc caaggccaaa gataaaggct tagcttctcc tatgcctgtg
     9421 atagaagggc ttaaaattcc agttgtgata ttgctaaatt gtaaagtaat acttgtatag
     9481 cttaaaattc cgtccttatc aaagagagct ttaaaccaag gttgtgtcca aatgataata
     9541 caaacaatga gtaaaataaa aggtgaccaa gcttttaaaa tttgattaaa acttaaggtg
     9601 ttatcttgag tgaaattgct ttcattgtca aatctaaaaa tattttttgg tttccaaaat
     9661 ttcaaaaata cagtcgtaac tgctaaagaa accacagctg aaataatatc aggtaattcc
     9721 gctcctaggt gatttgagct taaaaattga gtagttgtaa aacttagcgc cgcaactaaa
     9781 atagctggaa aagtttcttt aataccttta aatccatcca ttaaaaaaac tatgaaaaaa
     9841 ggtatagtaa ggcttaaagg aactagcatt ctacctacca tggcagaaac tgaatgctgt
     9901 tctatgccga caagatttgc catagcaata ataggaattc ccaccgcacc aaaagcaaca
     9961 ggagcggtat ttgcgataag acaaagccct gcagcttgta aaggacgcaa gccaagtcct
    10021 actaaaagtg cagcggttat agccacaggg ccaccaaaac ctatagcacc ctctaaaaat
    10081 gaaccaaaac aaaaacctat taaaatcact tgaattctat gatctggagt aatgctcatc
    10141 acgctttttt taatgatttc aaaagaacct gacttgatag aaagtttgta aagaaagatt
    10201 gccgcgatga taatccaagc tataggccac ataccatttg taaagccttg aataaaactt
    10261 gcacccacta aattccaagg cattttatag gcaaataaag ctactaaagt agcaagtata
    10321 acagttaaaa aacctgcttg atagccttta agttttaaaa caaccaaaca aactaaaaaa
    10381 catagtatag gtaaaaatgc cactaaagca cttagccaaa tgtttgaaaa agggtcataa
    10441 atttgttgcc atgttaaaat ttgttccaat ttttcctcct tgataattat tatgtataaa
    10501 tttattgtaa caaaaaatta aattaaaata aaagaattat agagtaaggt aaattacatt
    10561 gtattattat taattatttt gtgtatttta gtaatatcat aaatattaaa taaatataaa
    10621 aatagaacaa gataaaaatc ttattctaaa ggggtagcag ctgttaaagg tggggttata
    10681 atcattagtt catttacttc agcaaaaaaa ataggatcta gggtgcaagg ggctattcca
    10741 aagcgttttt gtataggaat atttggatta aaaaaagtta ctatacattc atcagattcc
    10801 aaaactaaag aacgaatttg cacagctgaa gttgttgttg gcattataga aaatacagtt
    10861 tctaatttac catcttttag atcatcttga caagattttg ctccaaaggt tccatcttct
    10921 aagatggcta aacaaagatc gctttctttt ggatttgtaa attgcacata accaaaagga
    10981 agttcatcag ctaatttatc tttttgtttt aactcatcgc ttaaaacaat ttctttaata
    11041 ttccaatttt gatcaatagg atcttttgag gtatccctaa aggcgcttaa aaaaattccc
    11101 gtttctaagc ttcttataga aaccatttcg gtaaaatctt tcaaatctcc agtaggagtt
    11161 gcaaaggcta aagttataaa cataaaaaac aaagtaataa tttttttcat attaaatgtc
    11221 ctaaaatttt ctaaaattta ctggaaaatg atctgaaact atatgagatc ttaaacttgc
    11281 aagcattaaa attgcagcta aaagcggtgg agtataggtt tgttgtctat ttgaatttcc
    11341 tgtaattgca taatcaagag tccctccgct tgcttgagtt gcgctagttg gaaaaaccac
    11401 tctaattcta tttgctaatt ctctatccac tgtacttgtt atagtagaag gatcacggtt
    11461 aaaatcccct gctatcatcc agttaacttg aggcatattt gcaaaatgtg catctacagc
    11521 tgtgataatt gctcctacat ctgttcctcc attagctaaa gcatggatat tgaaaaaagc
    11581 atcatttcca ttgcgaattc ctataatggg tcttgaaact gtagtaggtg gaggtaaaac
    11641 aatcacttct tcagcttgca ttcttgaaac tatagctaaa tttacacgat tagctcctac
    11701 atcaacgcga gaataataaa taaaaaccct atcaggcctt gaaagagttc ctaaattcca
    11761 ctcatattca tcaataggtg ttccaccttg ttgcacatgg cgtcctgttg gagtggctgt
    11821 tcttggtaaa gttcctgctt cttgtatcat taagatatct aaggggtttg ctccacttac
    11881 aagttgtctt acgctaacac tccatttgct ttctgtggct gcggatgagc cttgcaaatt
    11941 ccaagtgcca acattaaaat tttctaaatt tgcaaaagca aggttaaaag ataaaaataa
    12001 acatataatt tttttcatcg tacctctcct tggcgatata aaggttttgc agtaaaaggc
    12061 ggagtagtta aaaaccattg ttgatcaaaa ttatcttttt ttgcacactc tacggtaaaa
    12121 attttaaaaa ccttgtgaaa atcaccataa agatttgtaa taggtgcttg tatgcatttt
    12181 ccatttccta aatttttaat ttgaaccgct gtattgctca tagggataag tttccacatt
    12241 tgtgcgtgat tgcttgcatc gcaaggataa tggacaattc cattaccata agcattaaga
    12301 caagtattgg ttttggcatt tttaatcatt gcaaaatcat taggataaag caaaagttgc
    12361 caaactctag catcgccaaa tcctttacta tcgattaaag tatagcccca aatccaattt
    12421 ccttgtgcta aagcccaaac cgttaaagct gctccgctag ggcctaaaat ggttaaaaaa
    12481 tcagaaaccg cagggcgatt ttcaaaaatt aaaacatcat taaaagcttc gtctttaaag
    12541 cgaggattga tcccatttac tgcattattg ttggcactat tgcttgttct agttaaaggt
    12601 ggggtaatag gagtaatagg tactaaatca gcaccgctaa ttaaacttgg aatttcttga
    12661 ttggtaggaa aagtaggttc aagtcctagt tttaaaggat cagtatcttc aaattcgcca
    12721 aatgaacgcc ccaaaggatt tacattttca aatttagaag aacatgcata aagaaaaaaa
    12781 gtcataaaac aacataaaat aaaaactata attttttgca ttaaaaacct tgatatgtat
    12841 ttaaattttt aagaaaataa taacataaat ttcattataa ttttccgctt tttaaaaatg
    12901 ttttattttg ttgtttttaa aggtagaatt tacatgtatc ttaaacactt atattttagc
    12961 atctctcaaa tttttaattt ttacaaagaa ggttttaaaa atttaactct tggaaagacc
    13021 ctttggaaaa ttatttttat caaacttttt gttatgtttg tgattttaaa actttttgtt
    13081 tttgatgtaa attttaattc tatttttaaa agcgacaaag aaaaaagcac ttttgtactc
    13141 aaaaatctta cactcgaagg aaaataaatg aacgaactta gtagcgttga ttggtcaaga
    13201 gcgcagtttg ctttaactgc actttatcat tttttgtttg tgcctttaac cttaggcttg
    13261 tcttttatga tcgctatcat ggaaaccatc tatgtaaaaa ctaaaaatga aagatggaaa
    13321 aaaatcacca aattttggct ttcattattt gctataaatt ttgctatcgg tgtagctaca
    13381 ggcattataa tggaatttga atttggaaca aactgggcaa attatagctg gtttgtgggt
    13441 gatatttttg gtgcaccttt ggcggttgaa ggtattatgg catttttttt agaggctact
    13501 ttttttgcag ttatgttttt tggctgggat aaagtaagca agggttttca cttactttca
    13561 acttggtgtg tggctatagg aagtaatctt tctgcttttt ggattttagt ggcaaatggt
    13621 tggatgcaat atcctgtagg aatgagcttt aaccctgaca cagcaagaaa tgaaatgcaa
    13681 agcttttttg aagtagcact ttctcctgta gctatttcaa aatttttaca taccataggc
    13741 agtggttatg tgatttcagc tttatttgta atgggaattt cagcttggtt tatgttaaaa
    13801 ggacgccata ttatcgaggc taaaaaaagc ttagttgtag gagctagttt tggtttggtt
    13861 tgttcaatct ttttgttttt cagcggagat gaaagcgctt accgtgtaac tcaaactcaa
    13921 cctatgaaac ttgcagctat ggaaggggtt tatcaaggtg aacatcgtgc aggacttgta
    13981 ccttttggaa ttttaaatcc taaaaaaacc atagataata acgaaagtgt gtttttattt
    14041 gacattacta taccttacgc tctttctata ttaggaaacc gtgatccaaa ttcttttgtt
    14101 ccaggaattg aagatttgat ctatggaaat gaaagcaaag gtatagaacc tatgcaaaat
    14161 cgtatcgata gaggaaaaat cgctatacaa gctctaaaag actataaact tgctaaagaa
    14221 aacaatgata caatagctat ggcaaatcac aaatccattt tagaaactca ttttaaagat
    14281 tttggttacg gatatttaga aaaaccaagc gatactattc cacctgtggc tttaactttt
    14341 tatagctttc atatcatggt tgctttagga agttttttct ttttactttt catcgttacg
    14401 ctttatctta ccatggcaaa tgatattgag aaatttagaa aagtactttg ggtgtgtttg
    14461 ttatccattc cattgggtta tattgccgct gaagcaggtt ggattgttgc tgaagtaggc
    14521 agacaacctt gggcaattca agacttgctt cctgtacata tcgcagcaac acaacttgga
    14581 aaagtcaatg ttcaaatttc attttggatt tttgcagtac tttttacagc cttattgatt
    14641 gcagaagtta aaatcatgct tactcagatt aaaaaaggtt ttgacgcaca tgcaggacat
    14701 actccactta tgggcaaagg agaaaaataa tgttttttgg tttagaactt gaaggtttgc
    14761 aaatttattg gtggttgatt ttaagtttac tcggcggact tttggttttt atgttttttg
    14821 tccaaggtgg acagacttta atcgatgagc ttagcaagga tgagcttgaa aaaaccatgc
    14881 tagtcaattc tttagggcgt aaatgggagc ttggttttac aactctcgta ctttttggcg
    14941 gagcagcttt tgcagctttt ccactttttt atagtacaag ttttggcgga gcttattggg
    15001 cttggctttg tattttattt tgttttattt tacaagctgt ggcttatgag tatcgtaaaa
    15061 aagaaaataa tgtttatggc tctaaaacct atgaaatttt tcttaaaatc aatggttatt
    15121 taggtgtatt tttaatcgga gttgcagtaa gtagcttttt tagcggttct gaatttatct
    15181 taaatgagca taattttgtt tcttggcaaa atcctttgca cggcttagaa cttttactta
    15241 atccttttaa ttatctctta ggcttagctt tagtattttt agcaaggctt ttaggcgcag
    15301 cgtattttat aaacaatatc aatgatgaga atatcaaaat aagagctatg aaaaaactta
    15361 tgatcaatag tattttattt ttaccttttt tcttaggttt tttagtgtgg attttcttaa
    15421 aagatggttt tagtgtagat gcaaatggag ttgtaagcat gagtgcgaat ttatatttat
    15481 ataatttctt aaatcaaatg atttttgctg ttttgcttgc tatcggtgtg attttagtgc
    15541 ttttaggtat gtttcaagga gcaaaaggtt gctctaaagc tatttttacc ctaggacttg
    15601 gaacggtttt aacagttttt gctttattat caagcattgg tttaggtcaa agtgcttttt
    15661 acccatcttt aagtgatttg caaagttctt taactttaaa aaatgcaagt tcaagctatt
    15721 atactctaag cgtcatggct tatgtgtctt tacttgtacc ttttgtttta gcttatatta
    15781 tctatgtttg gaatgcaatg gataaagtaa aaatcacacg cgaagaaatc gcaaacgatg
    15841 atcacgcata ttaaggagaa aaaatgttac atgctttgtt tttattggct tggcctttgg
    15901 taatttatct gagctataaa tttataatgc taaatatcaa tcaattagaa aaagatagca
    15961 aactataaag caagataaga tttaaaccga tataagtata aatcttttca aaatattgcg
    16021 atttgcccat ttttgggcat cttttaatca taaatctttt aaagcttcat tagcagcatc
    16081 aagggcgtga ataaggcttg tgtcaaaaat tttgatattt gtatcatttt tagatattaa
    16141 taaaccaatt tcagtgcaag ctaaaagcac tccttttgcc cctttttctt gtagtttttt
    16201 tataatattt aaatattttt ctttagaatc ttgcttgatt tcacctttgc aaagctcatt
    16261 aaaaatgata tcattaacga tttttatatc ttcatcacta ggagtaataa cgctaatatt
    16321 ttcttcaatc agcatttttt tataaaaatc ctgcgtcatt gtgtatttag tacccaataa
    16381 accaattttt tgtatgtttt cttgttttaa agccttagca gaactttttg caatatgtaa
    16441 aatagggata tttatatttt gttgaatttc atcaaaaacc ttatgcatag tattagttgc
    16501 aattattata aaattagccc ctgcaagttc taatttttta gcacattgag tcaaaatttg
    16561 tgcagcttct tgccatttat cttggctttg taaattttct atttcttcaa aattaacact
    16621 gtaaagtaaa atttttgcag aatttaaaga ttttaattta tcatttatag cttgatttat
    16681 tgttttataa taagtaatag tgctttcaaa actcattccg cctataatac caatggtttt
    16741 catttttctc cttaagaatt aatttttgag tcgttttatt acaatatatt tcatagaaat
    16801 atgatttatt tttaaataaa tatattttaa tatttttatt
//
LOCUS       DARGBD010000028        16713 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.028, whole genome shotgun sequence.
ACCESSION   DARGBD010000028 DARGBD010000000
VERSION     DARGBD010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16713
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.028"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            107..1402
                     /locus_tag="SFZ04_000779"
     CDS             107..1402
                     /locus_tag="SFZ04_000779"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG8065072.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFTCFCSEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAPLAKFYT
                     QEASTIKELKEKMQAIFNAKNFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            1405..1686
                     /locus_tag="SFZ04_000780"
     CDS             1405..1686
                     /locus_tag="SFZ04_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEG8065073.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            1683..3308
                     /locus_tag="SFZ04_000781"
     CDS             1683..3308
                     /locus_tag="SFZ04_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG8065074.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLVQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLSKS"
     gene            complement(3205..3690)
                     /locus_tag="SFZ04_000782"
     CDS             complement(3205..3690)
                     /locus_tag="SFZ04_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065075.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEEIRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            3786..4277
                     /gene="mobB"
                     /locus_tag="SFZ04_000783"
     CDS             3786..4277
                     /gene="mobB"
                     /locus_tag="SFZ04_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEG8065076.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            4279..5121
                     /locus_tag="SFZ04_000784"
     CDS             4279..5121
                     /locus_tag="SFZ04_000784"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEG8065077.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            5114..5311
                     /locus_tag="SFZ04_000785"
     CDS             5114..5311
                     /locus_tag="SFZ04_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065078.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            5321..7207
                     /gene="metG"
                     /locus_tag="SFZ04_000786"
     CDS             5321..7207
                     /gene="metG"
                     /locus_tag="SFZ04_000786"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEG8065079.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDIYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFHNVELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCQKVALALNFEISSTNYAKMILDNKLLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            7211..8152
                     /locus_tag="SFZ04_000787"
     CDS             7211..8152
                     /locus_tag="SFZ04_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065080.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQTLVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPFFYANSFAKIISFLKEKNQKIIFDFNKIDDFK
                     IYFIDDKFEITPFGSSSQAFIVSNNQNTFEFWKEKFKNIKDFKIASKNSLFCDFSYNQ
                     LSDLRKLKNFKYCLILENYDIFEQEFENKENQTPSLF"
     gene            complement(8144..8596)
                     /locus_tag="SFZ04_000788"
     CDS             complement(8144..8596)
                     /locus_tag="SFZ04_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEG8065081.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIANNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            8651..11197
                     /locus_tag="SFZ04_000789"
     CDS             8651..11197
                     /locus_tag="SFZ04_000789"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HEG8065082.1"
                     /translation="MSFIQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYDGKIIKNGSAIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYEDK
                     ATLARRADKMREWLKNPTLLRADKDAKYAYIIDINLNNIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTK
                     EGYYSIFGSAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSNEHKANIYRYLNFNEIENFKLEN"
     gene            11247..12485
                     /locus_tag="SFZ04_000790"
     CDS             11247..12485
                     /locus_tag="SFZ04_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8065083.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWKEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALESYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNAVDDLGFNALDFALSAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            12482..13231
                     /locus_tag="SFZ04_000791"
     CDS             12482..13231
                     /locus_tag="SFZ04_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEG8065084.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNA
                     YKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFIGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            13228..14961
                     /locus_tag="SFZ04_000792"
     CDS             13228..14961
                     /locus_tag="SFZ04_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HEG8065085.1"
                     /translation="MNKFLVSLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFTGVLSGTFLLSLSANIFKAQHLTFVNYYNTTVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISNISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTTELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASVNPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            14958..16031
                     /gene="trmA"
                     /locus_tag="SFZ04_000793"
     CDS             14958..16031
                     /gene="trmA"
                     /locus_tag="SFZ04_000793"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEG8065086.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKNKKKYIIEYLDFADEKICAFMPKLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSVTLLYHKNIEDIKSNLENLSNNLHINLIARSKGKKLIFKTENLRQ
                     TLNIQGRKIFYEFNNDCFIQPNTTINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKILATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRAE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(16018..16434)
                     /locus_tag="SFZ04_000794"
     CDS             complement(16018..16434)
                     /locus_tag="SFZ04_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HEG8065087.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGVFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            16553..>16713
                     /locus_tag="SFZ04_000795"
     CDS             16553..>16713
                     /locus_tag="SFZ04_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEG8065088.1"
                     /translation="MNEKETISYIINTSKNIAIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEF"
BASE COUNT         6148 a         2461 c         2636 g         5468 t
ORIGIN      
        1 agaaaaaatt aaaaatatca taaaagtatt ataaccaagt aaaattaaat atccgtataa
       61 atttttctgt tataataagc ttttaaataa ttttaaaggc tataagatgt accgttttgc
      121 accttctccc acaggtgata tgcacatagg aaatttacgc gcagcaattt ttaattatat
      181 ctgtgcaaga caaaaaaata tggattttat cttacgtatt gaagatactg ataaggctag
      241 aaatatagca ggaaaagaag aagaaatcaa agaaatttta aatcttttta gtatttcatg
      301 gcagcattac tatatacaaa gtgaaaattt aaaattccat cgccaaatgg ctttaaaact
      361 tgtaagcgaa aaaaaagctt ttacttgttt ttgcagcgaa gaagaacttg aagcaaaaaa
      421 agagctggct aaaaaacaag gtaaagctta tcgctacgat ggcacttgtg aaaaactagc
      481 cgatattgat gttttagaat gtgaaaaacc ctttgttatc cgtcttaaaa aacctactca
      541 tactatgaaa tttactgatt ttatcaaagg cgagcttagt tttgagcctg aaaacataga
      601 ctcttttgtg attatgagaa cggataaaac tccaacttat aattttgctt gtgcggttga
      661 tgatatgctt gaaaatgtca cttgtattat acgcggagaa gatcatgttt caaacactcc
      721 aaaacaagaa catatccgcg caagcttagg ttataataaa gccatgactt atgcacactt
      781 gcctatcatt ttaaacgaag aaggtgttaa aatgagtaaa agagaagcac attcttctgt
      841 aaaatggcta cttgaaagtg gaattttacc tagcgcaatt gcaaattatc ttgtcatact
      901 aggcaataaa actccttgtg aaatttttac cttagaagag gctataaaat ggtttgatat
      961 ttctaaagtt tcaaaagctc ccgcaagatt tgatcttaaa aaacttttgc aaattaatcg
     1021 cgaacatatc aaaatgataa aagatgatga gcttaataaa attttagatt taaacaaaga
     1081 tcttgcacca cttgctaaat tttacactca agaagcaagt actataaaag aacttaaaga
     1141 aaaaatgcaa gctattttta acgcaaaaaa ttttggcgag tttgaaacag aatgtaaaat
     1201 tttaaaagaa ctcttaaaag atattgaact ttttgaaaat tatgaagatt ttaaaaatga
     1261 acttttaaac aaaagcaact taaaaggtaa aaaatttttc atgcctttaa ggataatttt
     1321 aacaggaaat atccacggac ctgagcttag cgatctttat ccttatatta aaaattttat
     1381 tcacgaatta gcaaggattt aactatggtt atagactctt ttattatttc tatttttcaa
     1441 gtactacaaa ttgtcattaa catttatact tggattatta tcatcacagc acttctaagc
     1501 tgggtaaacc ctgatcctta taatcctata gtgcaaattt tatataaact aagctaccct
     1561 gcttacgcct tagttagaaa aattccaaca cgcattggta atattgatct tgcgcctttg
     1621 attatagtct tagcattgca gtttcttggc atttttcttg ggaatatctt aaggagtata
     1681 ttgtgataaa aaaaatactc gtttttttat ttattttttc aagtttaaat gctacacaat
     1741 atagtataga aaaactcaaa aaggaagaaa attcacttgc taaggattat tatatttata
     1801 ggcttttaga aaaaaataaa atcagtaaaa aagatgcaca ggatttaaat tctcatattt
     1861 ttcgctatat aggaaaaatt aaatctgaac ttgaaaaaat catcccttta aagccttata
     1921 tcaacccaaa atatgctaaa tgctatacct atacagcaaa tactatctta gatgcaaatt
     1981 taacttgtca aagtgtgcgc ttaaattcat tagtttttat agcgagtcta aattccaaag
     2041 accgaactac tttagttcaa acctttaaaa atcaaagacc tgatttgaca aatttattgc
     2101 tagcttttaa tacttctgat cctatgagct atatagtaca aaaagaagat attaatggtt
     2161 tttttaaact ttataattat tctaaaaaat acgacttaga tttaaataca agtttagtca
     2221 ataaactacc aaaccacatt ggttttaaag attttgcaca aaatattatt attaaaaaag
     2281 aaaatccaaa atttagatat tctatgctag aaataaatcc tgaaaatgta agtgaagatt
     2341 ctgctttcta tttaggagtc aatgccttaa cttatgataa aacagagctt gcttatgact
     2401 tttttaaaaa ggcggcacaa agttttaaat cgcaaagtaa taaagacaat gctatatttt
     2461 ggatgtggtt gattaaaaac aatgaagaag atttaaaaac tttatcgcaa agttcttctt
     2521 taaatattta tagtctttac gcaaaagaac ttaccaacac accttttcca aagatagaaa
     2581 gccttaatcc aagcaagaaa aaaaataatt ttaatatgca agatcctttt gcttggcaaa
     2641 aaataaacaa acaaattcgc gatgctaacg caagtcaact agatgtcttg gcaaaagaat
     2701 ttgacacaca agaaaccttg cctatttatg cttacatatt agaacgcaaa aataatttta
     2761 aaaaacatta ttttataatg ccttattatg acaatataaa agactataac aaaacaagac
     2821 aagctttaat tttggctatt gccagacaag aaagtcgttt tattccaact gctatttcag
     2881 tttcttatgc tttaggcatg atgcaattta tgccattttt ggccaatcac ataggggaaa
     2941 aagaattaaa aattccaaat ttcgatcaag attttatgtt taaacctgaa atagcatatt
     3001 actttggaaa ctatcatcta aattaccttg aatcacgttt aaaatctcca ctttttgtcg
     3061 cttatgctta taatggcggt ataggattta ctaaccgtat gcttgcaaga aatgatatgt
     3121 ttaagacagg caaatttgaa cctttcttgt ctatggaact agttccttat caagaaagcc
     3181 gaatttacgg aaaaaaagtt ctagctaatt atattgtgta tcgacatctt ctgaacgata
     3241 gtataaagat ttcggatatt tttgaaaatt taattcaaaa caaggcaaat gatctaagca
     3301 aatcttagct acaagcctaa tctcttcctt gacactagga agagatgctt taaaataatc
     3361 agtatagttg ttttgtatta tatattttaa atactcatca tccaattttt caatattggc
     3421 ttttttatta ttgataaaaa cttctaaatt ttgaattttt aatgtatttg gagtaaaaga
     3481 taaagctaat acatcatctt tacttgtctt gtctagaatt gggtttaaat aagacatagt
     3541 tataatggca ttaatcttat cttgtgtgat tttgtatttt tgagtaaaca ttaaagtttg
     3601 agattttaaa tttgtatcca caatcgcctg atcttttaaa gaacaagctc caagcaaaaa
     3661 agcacctaaa attacactat aaattttcat tctttttcca tattttttag tattattgta
     3721 gccttttaac cctatttttt ggtttaaaaa gatataattt tgcaaaaaaa ttaagagtat
     3781 attttatgaa acaacttatt atagctttta gcgggccttc aaattcagga aaaactacac
     3841 tcataaccaa aatagctgat aattttttgc aacaaaattt aaaagtttta atcattaaac
     3901 atgatcctgc cgataaagct caatttgatt ttaacggtaa agatagtttt aaattttttc
     3961 aaagtggagc tgaagtcatg gttttaagcc ctacaagaac aacttttttt tctcatgaaa
     4021 atagagatat tttaaaagct ttaaaattaa gccctgattt tgacatttgt ttggttgaag
     4081 gattaaaaac tcttgattta ccacgcatta gcgtattttg caaagaaatt gatgaaagtt
     4141 attttatttt ttcaaacgcc attgcaagct atgaaaaaat ttctcaccct tatcttactt
     4201 ggcttgattt aaacgatata caagctattt gccaatacat acttaaaaat gctaaaaatt
     4261 tacaaggaga attataaaat gcaagaagtg atttcttata tacaaaaagc ggttttagaa
     4321 atttctaacg ctttaaaatt tcccgataca agctacagtc aaaatcaaaa ttttacaggc
     4381 gatacccaac tcaaatttga tgttttaagc gatgaaatca tcacaaaaac tctaagtcaa
     4441 tgttcaagta ttaaagccat cataagtgaa gaaaaagacg aaattttaac gcttaacgag
     4501 agggcaaatt ttatcgtagc ttatgatcct ttagatggtt ctagcttaat ggatgttaat
     4561 tttgccatag gttctatttt tgctatctat gaagaaaaag caagtgctaa aaatttaaga
     4621 gctgcgcttt atagtatgta tggagcgcga ttagaacttg tgatttgcaa agatcagcca
     4681 aaactttatc gcttaaatgc aaataatgaa tttattttta taaaagatct taaaatgaat
     4741 gaaaaaggca agattaatgc tacaggcgga acgcaaaaat tttgggaaga aaaacacgct
     4801 aaatttatca aaagtctttt tgatgaaggc tatcgcttaa gatattctgg agccatggta
     4861 agcgatatca atcaaatttt attaaaaggg ggtggcattt ttagctatcc tgcaacacaa
     4921 gatgcgccta atggcaaact tcgtgccttt tttgaagtct ttcctctagc ctttatcata
     4981 gaaaaagcag gcggaaaaac tacaaatgga aaaaaccgct ctttacttga acttgaattt
     5041 gataaaatcc atgcgacaac tccttgtttt tttggctcag aatatgaaat ttcaaaactt
     5101 ttaaaggctt acaatgaatg aagttagaga tgaatttgag caagatatgg ataaaaaaaa
     5161 agaaatttta ctttcatgtc aaaactcaaa aaacctaaac tcttgttata attgcgatga
     5221 aatttttaac tgccaaacta gaaaaaatta tgttgatgca gtctataaca gtatgtctaa
     5281 gggtaaaacc gaaggcggat ttgactttta aaggaaaaaa atgcgttata ttacaacacc
     5341 aatttattat gtaaatgatg tacctcattt aggtcatgct tatactacca tcatagccga
     5401 tactttagca agattttatc gtttgcaagg acatgaaaca agatttctaa caggaacaga
     5461 tgagcatgga caaaaaatcg aagaagctgc caaactaaga aattccactc ctcaagaata
     5521 cgctgataaa atcagttttg aatttaaaaa attatgggat gaatttgaaa tcacctatga
     5581 tatttacgca agaacaactg atacaaggca tattgaattt gttaaagcta tgtttttaaa
     5641 aatgtggcaa aaaggtgata tttataaaga tgaatacgaa ggacactatt gtatttcttg
     5701 tgaaagcttt tttactcaaa gtcagcttat taacgattgt tcttgcccag attgtggcaa
     5761 acaaactaga attttaaaag aagaaagcta ttttttcaaa ctttcaaaat atcaagataa
     5821 aattttacaa tggtatgaag aaaaagatcc catcttgcca aaaaacaaaa aaaacgaact
     5881 tataaatttt gtccaaaacg gccttaaaga tctttccatt acaagaacaa gttttgattg
     5941 ggggattaaa ctgcctcaag aaattaatga tgataaacat attatttatg tatggcttga
     6001 tgcacttttt atctatgtaa gctcacttga ctttcaaaac aagggagaaa atgctaaatt
     6061 ttggcctgcg catgtgcatt tagtaggaaa agatatcttg cgttttcatg ccatttattg
     6121 gccagctttt ttaatgagcg tggatttgcc tttgccaaaa tttataggtg cacatggctg
     6181 gtggactaaa gaaggtgaaa aaatgagcaa atctaaaggc aatgttgtaa aacctaaaga
     6241 agtggttgat atctatggaa gcgaagcttt tagatatttt ttacttagag aagtgccttt
     6301 tggtaacgat ggggatttta gcgaaaatat gctgataaat cgtatcaatg cagagcttag
     6361 caatgaattt ggaaatttac ttaatcgcat tataggtatg agtacaaaat attctcaagg
     6421 aaatatttca aaagaaggtg ttttaaaatt tcacaatgtt gaattaaatc aagcaaaaga
     6481 acacttaaat ttagcggtag aatttttaga aaacttacag tgtaatcgtt atttagaaga
     6541 actttttaaa gccttaagtg tagcaaattt agctattagt aaatacgaac cttggaattt
     6601 aatcaaagaa aacaaacacg aacaagctaa cgctttagtt gcactttgtg caaatatttt
     6661 agccaaaaca agccttttat taagccctac tctaccaaag tcttgtcaaa aggtggcctt
     6721 agctttaaat tttgaaattt catctacaaa ttatgcaaaa atgatacttg ataataaact
     6781 tttagatttt aaagcaaatc cttgcgaagc tttatttcca aaagtagaaa aagctctttt
     6841 aaaacaagaa attaaagaag aacctaaaaa agaagaaagt cctaaaataa aaatcgatga
     6901 ttttgcaaaa attgaaatca aagtcgctaa agtgcttgat tgtcaaaata tagaagggag
     6961 tgaaaaactt ttgaaatttc aactcgaact tgacgataaa gaaatccgtc aagtactctc
     7021 aggcatagca aaatactata aagccagtga tttaatcggt aaacaagttt gcattataag
     7081 caatcttaaa aaagctaaaa tttttggaca tgaaagcgat ggtatgatac tttctgcaaa
     7141 aagcggagat aaacttgttt taatcacccc tgaacaactt gtacaaaacg gttctttagt
     7201 gggttaaaat atgcaaatta gcaatttagg cgaactttta aacgcgacac tcattcatga
     7261 aggtagcgtt ttaagcgtgg aaggttttgc cataaattta aatgaactta aagcaggctt
     7321 tgccttcttt aataacgata aaaaagaaat tacccaagct gtaaaaaaag gcgcttatgc
     7381 tataattaca gaaaatgaca ttactattga agataaagac attttttact ttagagtaga
     7441 aaatctagaa caaactcttg taagattttt acgctttttt tgcgaagata aagaatgtga
     7501 atttttgctt tttaaatctt acgaactaag tctttgtaag gctttttatt ttaacatttt
     7561 aaaaggaaat atttttgctg attttgaaaa actaatcaaa gcaaaaaagg gtgaaatttt
     7621 ttgctactgt gaagaaaatt acttaaataa actttgtgcc tattctcata gtctaaaaga
     7681 tgctaatttt accttattat cgcgatctag cttctttttt acaactttga tttgtgaaaa
     7741 tttatatttt aaaaatctta atttgccttt tttttacgca aatagttttg caaaaattat
     7801 ttctttttta aaagaaaaaa atcaaaaaat aatatttgac tttaataaga ttgatgattt
     7861 taaaatttat tttattgatg ataaatttga aatcactcct tttggttcaa gctctcaagc
     7921 gtttattgta agcaacaacc aaaatacctt tgaattctgg aaagaaaaat ttaaaaacat
     7981 aaaagacttt aaaattgctt ctaaaaattc tttattttgc gatttttcct ataatcagct
     8041 ttcagattta agaaaattaa aaaattttaa atattgttta attcttgaaa attatgatat
     8101 ttttgaacaa gaatttgaaa acaaagaaaa tcaaacccca agcttatttt aaattcactc
     8161 cttcattttc aagcaaaaat ctttttattt caagccctcc attatatcct cctatgccat
     8221 tgtttgcaat aactctatga caaggtataa aaataggaat ttgattttta gaatttgcat
     8281 ttccaacagc tctaaaagct tttggatgat taattttttc tgctatatct ttataagtag
     8341 ctattttgcc ataaggaatt tccattaaag ccttataaac ctttgattca aaatccgtac
     8401 cttgtatcaa aacaggaatg ctaaattttc taagcttatg agtaaaatat aaatcaagtt
     8461 catattttgc taagtcaagt aaactacaat ttttttctga tcttttatta tcacaaaaat
     8521 cgactctagt taaaaatttt ccatcactat gtaaagatag gtaacataaa ggcattttat
     8581 aataaacttt aaacattttt tatccttcaa agagctacaa ttataataaa aaatatttaa
     8641 ggagtagaaa atgtctttta tacaagaata caataaactt gttgaagaaa gagccgcttt
     8701 gggtatacca ccccttcctt taaatgcaaa tcaaactaga gaactttgta aattacttga
     8761 aaatgaaaat aatgaagagc ttgcaaatct tttagaaaat agagtaaatc ctggtgttga
     8821 tgatgcagct ttagtaaaat gtgaattttt agattccata cttaaaggca aaatcagtgc
     8881 tccaaatata gacaaaaaaa gagccttaag aatgcttgga actatgctag gcggatataa
     8941 tgttaaagtt ttaatcgatg ccttaaaaga tgaaaacata gccaaagatg ctgcagaagt
     9001 gttgaaaaat attatttttg tacatgataa tttccatacc atagctgaac ttagcaaaaa
     9061 caatccacac gctaaggaag ttttacaaag ctgggcaaat gcggactggt ttaataaaaa
     9121 agaaaaacta ccacaagtga ttaaatgtat agtttttaaa gtagcagggg aaacaaatac
     9181 cgatgatcta agccctgcag gagatgcttt tacaagaagc gatattcctt tacatgcaaa
     9241 tgccatgcta aaggtaagac aaacaggatc cttagaaaaa atcaaagagc ttaaaaaaag
     9301 cggtcgcgaa gtggtttatg taggtgatgt tgtaggaaca ggttcaagta gaaaatcggc
     9361 aataaattcc atacaatggc acttaggaaa agaaatagaa ggtgtgccaa acaagcacag
     9421 cggtggtata gtaatgggtt caaccatagc accgattttc tttaacactg ctcaagatag
     9481 cggggcttta cctatcatct gtgatgtaac aaacttagaa atgggcgatg agtttgaaat
     9541 tcatccttat gatggaaaaa tcataaaaaa tggctctgca atcgcagaat ttacactcag
     9601 tccaaacact ctcttagatg aagttagagc aggaggaaga atcccactta tcataggtcg
     9661 tgggctttgt actaaggcta gagaattttt aggaatggaa agcgaaaata tctttaccaa
     9721 acctgaacaa cctaaatctt caagcggtgg ttataccttg gctcaaaaaa tgctaggtcg
     9781 tgcctgtgga gttgaaggtg tgcgtccagg tatgtatata gaacctataa ctttaaccgt
     9841 aggctctcaa gataccacag gtcctatgac tagagatgaa attaaagaac ttgcaagcct
     9901 aggttttaat gcagactttg ttatgcaaag cttttgccat acagctgcgt atccaaaagt
     9961 aagcgattca aatttacata aaaccttgcc caatttcatg acaagtcgtg gtggggtaag
    10021 tttaaaacca ggtgatggag ttatccactc ttggcttaat cgttttgtat tgccagatac
    10081 cgtaggaacg ggtggggatt ctcacacacg ctttcctata ggaatttctt tccctgcagg
    10141 aagcggactt gtagcttttg ctgcagttac tggttctatg cctttaaatg tccctgaaag
    10201 tgttttagta cgttttagtg gagaattgca agccggagtt accttaagag atttggttaa
    10261 tgctatacct tattatgcaa tcaaacaagg acaacttacc gttgaaaaga aaaataaaaa
    10321 gaacattttt gcaggaaaaa ttttagaaat agaaggcttg ccaaacttaa aagtagaaca
    10381 agcttttgaa ctcagtgatg caagtgctga aagatctgca gctgcttgta gtgtagattt
    10441 aagcatagaa agtgtaagcg aatatatcaa atcaaatatt tcacttatag aagcaatgat
    10501 agaagcagga tatgaagata aagccactct tgctagaaga gcggataaaa tgagagaatg
    10561 gcttaaaaac cctactcttt taagagcaga caaagatgca aaatatgcgt acattatcga
    10621 tattaatctt aacaatatca aggagccaat tctagcttgt ccaaatgacc ctgatgatgt
    10681 ggcaacctta agcgaaattt tagccgatga caagcgtcca aaaaatatag atgaagtttt
    10741 tgtaggttct tgtatgacaa acataggaca ttatagagct ttgggagaaa ttttaaaaga
    10801 taaaggcata cttaaaacca gactttgggt agtgcctcca acaaaaatgg ataaagcaca
    10861 actcaccaaa gaagggtatt atagtatctt tggctctgct ggcgcaagga tagaagttcc
    10921 aggttgttcg ctatgtatgg gaaatcaagc aagagtaaat gatggagctg tagttttctc
    10981 aacttctaca agaaattttg acaaccgtat gggaatgggt gctaaagtat atctaggaag
    11041 tgctgaactt gcagcagttt gtgcgatttt gggtaaaatt ccaagcaagg aagaatactt
    11101 acaaattgtc agcgaaaaac taagtaatga gcataaggca aatatctata gatatttaaa
    11161 ttttaatgag attgaaaatt tcaaacttga aaattaattc aaatttaata ctaaataaca
    11221 aaattaaaat tttcaaagga aaaatattga agttattatt cacttccttt tgttgttttg
    11281 caagtttaat ggctagcgat gccattaact gcgacaacat taaaaataat aaaacattgc
    11341 taaatgaaag ttcaaattta gattatttaa atatagcttc aagctgtaaa gaatctttaa
    11401 aaaatcaaga ttttacaaaa aaactctatg caatttccaa tgaaattcgc ggaagcaata
    11461 gctcttgtaa tggtgtggct tatttgccaa aattacaaca atttgatttt ttattattaa
    11521 aaatagctat cgatcccatc gcttatcaaa aaactttaga tacacccgaa aatttagaaa
    11581 aaaaatatga tattttaaaa tcttatttta gatattgggc atatcaaagt ataggaaatt
    11641 ttagacttta caaagctttt tggaaagaat acaataacgc tatagaacct ttagaaaagt
    11701 attttgaaag taattttaat tttgataaag gtagtaatat ttactatact agcaatgcct
    11761 taaacgaatt tttaaattgg gctgttggtg aaacaaaaat ttacaaagac attagtcctt
    11821 tagcaaaaat catgtcaaat aaaaattatt cagtatctta tatacaagat tttatttttt
    11881 caaataatcc aagccaagat gaccttacta tagccttgca agcagcgctt ctaaatcaaa
    11941 gagaaaaaga aattttagaa cttttgattc gttttggcgc taggattgac gaaggttatg
    12001 aaagtgctat tttttatgca ttggaaagtt atgaaaatac aaacttttta atccaaaatg
    12061 gagcaaatgt taatcaagcc aatgcctttg gtaaaacccc acttttttat gccatagagt
    12121 ttaatcgtct tgatatcata aaactacttc ttgataatgg agcaaatgtt aatcaaaaat
    12181 atattaataa caatgaaaaa ttagcattaa gtgcgaacat aggttcaaat acgccttatt
    12241 ttattacatt ttgtgctcta gagcacactt caaaaaatgt tttaatgcat gctgcagcct
    12301 atggaaatgt tgaaatttta aaacttctta tttcaaaagg agcaaatttt aatgctgttg
    12361 atgatcttgg ttttaatgca ctcgactttg cgctatcagc aggtaaaaaa gaaaatgctg
    12421 attatctaaa aagcttgggt ttaaaagcaa acgaaaatct attttacgga ggtagtttag
    12481 aatgaaaacc gcatttatta caggagctag ttcaggtttt ggtagagctt gcgttgaagc
    12541 ttttatacaa gaaggctaca aagtaatcgc ccttgctaga cgcaaagagc gtctagaaga
    12601 gctaaaaaat gcttacaaag ataagattta caccctttgc atagatgtaa gaaatcaaaa
    12661 agaaatcttt gaagctattg aaaatttacc taaagaattt caagaaattg atgtgctttt
    12721 taataatgca ggtttagctt taggggtaga tgaatttgat aaattaaacc ttgaagatat
    12781 taacactatg gtagatacaa acatcaaagg atttttatat gttgcaaaag ctgttattcc
    12841 tatacttcgc aaacaaaaaa atgcttatat ttttaactta ggttcggttg cgggacgcaa
    12901 tccttatttt ggaggcaatg tgtattgtgg aaccaaagcc tttataggac aattttcatt
    12961 ggccttaaga aatgatctta gaggaagcaa tatcaaagta acaaacattg ctccaggact
    13021 ttgcaaaact gaatttagtg aagtgcgttt taaaggagat atccaaaaag ctgatgcagt
    13081 atatgaaaat acgcaattta tcagtgctaa tgatattgcc aaagtggtaa tgtctatcat
    13141 taacctacca agccatatta atgttaatga aatcgagctt atgccggtaa cacaaacttg
    13201 gaatggattt tatatagaaa gagatgaatg aataaatttt tagtttcatt gtttttacct
    13261 ttagttgcat ttgcaaactc ctcagaagca gctgcaaatg ctaatttatt tggagctttt
    13321 acgcttatac cacctttagt tgctattgct ttagccttta tcacaaaaga tgttatttta
    13381 tcgctcttta ctggagtttt aagtggaact tttctactta gcctttctgc aaatattttt
    13441 aaagcacaac atttaacttt tgtaaattat tacaatacta cagtagaatc tttttcaaaa
    13501 attatttcct atatcttagg ttcaacttca gatccagtaa atgcaggaat cattttacaa
    13561 attctttgta taggtggtct tgtggcactt atcacaaaaa tgggaggtgc aaaagctgta
    13621 gcattaaaat ttgccaaaag agccaaatca gctgtatcag ctcaagttaa cacttggttt
    13681 ttagggcttt taatattttt tgatgactat gctaatttac taatcgtagg tccaattatg
    13741 cgtcctttgg cagataaatt taaaatttct cgtgaaaaat ttgcctttat tatcgactct
    13801 accgcagctc ctgtggcagg aatagctgta atttctactt ggataggctt agaagtttct
    13861 ttaattaaaa ccgcttatga acacataggc attagcaata ttagtgcttt tggaattttt
    13921 gttgaaacca taccttatcg tttttataat atcttcatgc ttttttttgt agtcatgact
    13981 gcaatcatgg ggcgtgagtt tggttctatg tacaaggctg aagtgcgtgc aagaaccaca
    14041 ggacaaattg ctcctctacc taaatcaggc acactagata ctactgaatt agaagatcag
    14101 tttttagcac caaaagaagg tattaaaatt cgtgcttttg atgctattgt tcctattttt
    14161 actttaatca ttttagctat attaggattt tattttaatg gacttagcac tttagaaggc
    14221 gaagaacttg caaaagcaag tgtcaatcct ttgtcttttg aaacttttag ggctgctttt
    14281 ggaaatgctg attcttctgt ggtgttattc caagctgctt tgtttgctgc tattgtagcg
    14341 atttttatcg gggtgcgtcg taaaattttc aatcttaaag aagcggtaga aacttggata
    14401 tatggctgga aaaccatgat ttttaccata gtattgcttt tatttgcttg gtcgctttca
    14461 agtatagtaa aagatctagg aacttcttta tttatcacta gtttgcttgc agataaattg
    14521 cctgagttta ttttgcctgc tactattttt gcttttgctt cagccatttc ttttgccata
    14581 ggaacaagct atggaactat ggggatttta atgcctttgg ctgtgccttt agctcatgaa
    14641 atcgccaaaa tcaatggcat ggatgcaaac gctatgcatc attatatggt tattaatata
    14701 agctgcgttt taacaggtgc gatttttgga aaccattgtt caccaatttc agacaatgta
    14761 atcctttcat ctatgagtgc aaaatgcgat catatggagc atgtaagaac acagattcct
    14821 tatgctttat ttatctgtgg catttcttta atcgctggat atattcctgt atctttagga
    14881 cttagcgttt ggtttgtctt gcctttaaat ttcatactta ttgcactttt actaagactt
    14941 atcggaaaga aagttccatg agtcttgaaa attttggaaa ttttctcact ttagatgaaa
    15001 aacattcttt cataaaaaaa tattttaaag aattttatac aaaggatttt aaactttttg
    15061 cttcaaaaga taagcattat cgtacaagag ctgaactttc attttatcat gaaaacgata
    15121 cgctttttta tgcgatgttt gatccaaaaa acaaaaaaaa gtacattata gaatatttag
    15181 attttgccga tgaaaaaatt tgtgctttta tgccaaaact tctagaatac ttgcgtcaag
    15241 ataataaatt aaaagaaaaa ctttttggtg tagaattttt aaccacaaag caagaactta
    15301 gcgtaacttt actctatcat aaaaatatag aagatataaa gtcaaattta gaaaatttaa
    15361 gcaataatct tcatatcaac ctcatagcaa gaagtaaagg caaaaagctt atttttaaaa
    15421 cagaaaatct aagacaaact ttaaatattc aaggtagaaa aatattttat gaatttaaca
    15481 acgattgttt tattcaacct aacactacta taaatgaaaa aatgattact tgggtgtgtg
    15541 aaattttaaa cactcaaaaa agaatggatt tgcttgagct ttactgtgga tatggaaatt
    15601 ttactttagc tttagcgcca ttctttttta aaattttagc cactgaaatt tcaaaaagca
    15661 atattaattt tgctttaaaa aattgcgagc ttaacaatac aacaaatatc cactttgcaa
    15721 gactttcaag cgaagaatta agtcttgcta tcaaaaaaga aagagaattt tttcgtttaa
    15781 aagatattcg attagatgat tttaatttct ctcatgtttt agttgatcca ccccgtgcag
    15841 gacttgataa aagcgtaatt gacttaataa aaaaatatga aaatattatt tatatttctt
    15901 gcaatcctat cactttaaaa gaaaatttaa aagaattaag cctaacacat agagcggaag
    15961 agtttgctct gtttgatcaa tttgtcaata ctccacatct tgaatgtgga gtatttctta
    16021 gcaaggtata aaaaaataat tcattaattt agccagtatt actatcgcga tacaaagcac
    16081 aaatacaaaa gggtggataa aaacaccgag tggatttttc ttctttaata taaaatgaca
    16141 aaataaagaa aaaacaacta aagataaaat tccaaaagcc aaaataattt ttacagcaaa
    16201 aagtaaattt aaaggtttaa aatgaaaacc cgccaaagca cctccgctta aaaaaagcaa
    16261 aagaaccaca aaaggcatta ttttaacccc agtagcacta aaaagacttt tgtcaaaatt
    16321 aggatttttc tttttaacta cacccaaaac aaatacatca acaaacaaat aacctataaa
    16381 caaaatagca caaagaagat ggattgttaa agtatatgga taaaattctt ccatttttcc
    16441 ctccttatta aacttcggaa tttgctatat tataacactt ttttcatttt ttaaattcac
    16501 tttagttaat tttttaatca tttaagataa aataccaaaa caaaggttaa caatgaatga
    16561 aaaagaaact atctcttata ttataaatac aagtaaaaat attgccatat ttgctttaag
    16621 tccagataag acaaaagctt cttatagggt agcagaattt ttacaaagaa aaaattataa
    16681 aatttttcct atttatccta aagaagagtt tat
//
LOCUS       DARGBD010000029        16548 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.029, whole genome shotgun sequence.
ACCESSION   DARGBD010000029 DARGBD010000000
VERSION     DARGBD010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16548
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.029"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..734)
                     /locus_tag="SFZ04_000796"
     CDS             complement(<1..734)
                     /locus_tag="SFZ04_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEG8065089.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGK"
     gene            complement(727..1509)
                     /gene="fdhD"
                     /locus_tag="SFZ04_000797"
     CDS             complement(727..1509)
                     /gene="fdhD"
                     /locus_tag="SFZ04_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEG8065090.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            complement(1676..2608)
                     /locus_tag="SFZ04_000798"
     CDS             complement(1676..2608)
                     /locus_tag="SFZ04_000798"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEG8065091.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            complement(2605..3246)
                     /locus_tag="SFZ04_000799"
     CDS             complement(2605..3246)
                     /locus_tag="SFZ04_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG8065092.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            complement(3243..6047)
                     /locus_tag="SFZ04_000800"
     CDS             complement(3243..6047)
                     /locus_tag="SFZ04_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(5505..5507),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEG8065093.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANP
                     AVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIF
                     DEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTL
                     IWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENL
                     PGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDA
                     IDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIY
                     LLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTL
                     RDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGE
                     YYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIN
                     TGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARA
                     VVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPL
                     NLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGT
                     KIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYD
                     IMCQIPETKGGLCRISKDGK"
     gene            complement(6047..6238)
                     /locus_tag="SFZ04_000801"
     CDS             complement(6047..6238)
                     /locus_tag="SFZ04_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEG8065094.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            complement(6213..6926)
                     /locus_tag="SFZ04_000802"
     CDS             complement(6213..6926)
                     /locus_tag="SFZ04_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEG8065095.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIALAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            complement(7230..8378)
                     /gene="nspC"
                     /locus_tag="SFZ04_000803"
     CDS             complement(7230..8378)
                     /gene="nspC"
                     /locus_tag="SFZ04_000803"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEG8065096.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMFLDRKNELQMIREFSYKDYSLRN"
     gene            8502..10043
                     /gene="cueO"
                     /locus_tag="SFZ04_000804"
     CDS             8502..10043
                     /gene="cueO"
                     /locus_tag="SFZ04_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HEG8065097.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKERDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRAEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGK
                     SESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            10045..10266
                     /locus_tag="SFZ04_000805"
     CDS             10045..10266
                     /locus_tag="SFZ04_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEG8065098.1"
                     /translation="MVKVEFLGPINKENLELKVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            10267..10713
                     /locus_tag="SFZ04_000806"
     CDS             10267..10713
                     /locus_tag="SFZ04_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEG8065099.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            10717..11907
                     /locus_tag="SFZ04_000807"
     CDS             10717..11907
                     /locus_tag="SFZ04_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG8065100.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGITPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLAPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIKFENGRILANLEGKKKGSSAIINNLNNKAALMVVPKECEILENESLVDI
                     IFMP"
     gene            complement(12207..12638)
                     /gene="cas2"
                     /locus_tag="SFZ04_000808"
     CDS             complement(12207..12638)
                     /gene="cas2"
                     /locus_tag="SFZ04_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEG8065101.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF"
     gene            complement(12631..13521)
                     /gene="cas1"
                     /locus_tag="SFZ04_000809"
     CDS             complement(12631..13521)
                     /gene="cas1"
                     /locus_tag="SFZ04_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEG8065102.1"
                     /translation="MSYDEAFKTLFISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQISISSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFILKKYNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            complement(13518..16471)
                     /gene="cas9"
                     /locus_tag="SFZ04_000810"
                     /pseudo
     CDS             complement(13518..16471)
                     /gene="cas9"
                     /locus_tag="SFZ04_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes.;
                     frameshifted; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
BASE COUNT         5457 a         3037 c         2199 g         5855 t
ORIGIN      
        1 ttttttcctt ttaaaaacaa ttctttaaag cgtttattag cgtattcttc tatgtctttt
       61 tgcaaaatag agtaattttc catcaattcc atagctctag gagtaagttt tgttcctgat
      121 tctttagagc gtccttgtct tgtgctaact aaaatttctt gagaattttt ttgtaaggtt
      181 tgtaaatgca tccaagcttt tttataatta atccccataa gtttagaagc atgtaataaa
      241 ctacctgttt gtccgataag ttctaaaagt tctgtttttc ctcgaccaaa aagcaaatct
      301 ccatccgcat tttcaatcca agtttttgtt cttactataa attgcttacc ttttttttct
      361 ttaaaacaac caagttgaca atactttaca tcaaccttat aagtttttaa agctgaacgc
      421 atacttttaa gtccacaacc ttctttagca atatctcttg catctttaca aaaaattcta
      481 cgcttttcat ctaaactagg ttctattttt ttaagcactt caatctttgc tttttcaaaa
      541 tctaaatgtc caaattgccc caactcgcaa ttatcaattc tcatgtgatt ttcatcggct
      601 aattgtccga ttttttctat atttatatta aatttctttg caattttaaa agccgtacca
      661 caatctaatt tttcattgct atttaacaat tctctcatat atgagatgat ttctttttct
      721 tgatttttat ccatgaattc taaattctcc actataaata ttgatcttat tttctctggc
      781 aaaaccacaa agcgttaaat caaattttct tgctatcata acccctaaac aagtaggagc
      841 cgtgcgtgaa acaagcactg gaattttatg cataactgct ttagctacca tttcagaact
      901 tagccttcca ctaaccatta aaaaacattg acttaaatca accccagcta aacgtgcttt
      961 tcctaaagct ttatctatgg tattatgttg agctatatct tcacctataa aaaaagtttt
     1021 ctcatctaca aaaagcttag ccgtatgcac acagcctgtt ttctcgtaaa gctcgcattg
     1081 agtataaaaa gtactcattt gttttaaaat ttcatctttg ctaaattttg catcagaact
     1141 aattttactc gcttcaatag cttctggatc gatattggca gtatgtgctc taccgcaacc
     1201 acttataact acaccttcag cattaagctt tgctaaattt tctttatcaa tctttgcttt
     1261 aatatgcaca ctcataccat catcttttgt ttctatgctc tcaatatcgc ttactttcgc
     1321 aatgatattt tcactcatta aatatcctat tgctaatgcc tgttcatcta caggagttgc
     1381 cattaaagca cctacttttt catcattaat aaaaatttca agcttaattt cacgcactaa
     1441 agtatcattg catgtaaaag attcatcacc tttatatttt aaaatttgag ttgtaaataa
     1501 cggatccata ccttatcctt taaatatctt taaacaatat tatatcaaaa aaacataaat
     1561 aacaaattta tatatggaaa aatagatttt agattcaact tataaaagaa aattcgttct
     1621 atttatttca aaaaagctta aaactaccgc tatgtaataa catagcggtt aaagattaaa
     1681 ttttcacatt aggatcataa gaaaaactag gttcaatttg ctttttattg cttaattctt
     1741 tataccaata agaatgtaaa atataaacct cttcttcttc tttataacca ctaatcatag
     1801 aatggatact gcctttgatt gcaaatactg ccatataaat atgcacacca aaaaacactg
     1861 cacacactat acccaagaaa ttatgcacta tagctgaaat tcttaaaagt tcaatttgag
     1921 ttaaaccaaa aagaccttga attgccgtgg aattaaaatc aagaaaatac ataaatccac
     1981 ctgtaattat catcaaaaat ccaccaaata cagctatata ataccaagat ttttgaccaa
     2041 aattaaactt acctgcaggt acaggacgtt ttactttgct taaataacca cctactatca
     2101 tcatccatct gatatcataa cttgcaggaa gcattctttt aatccaccat aaaaacatag
     2161 ggattataga gatgataaac aaaatcgttg caaaagcgtg taaattttta caaaccctta
     2221 caaaaactcc acccccaaaa acttctccaa acatcatcac aaaaccagtt ggcactaaaa
     2281 tcacccaaga aatggctgcg ataaaatgaa aaagtctttc aaataatgta aaagcataaa
     2341 ttttctttcc atcgtgtgaa aattgcttag gtcctataac catataatgc aaagcaaatg
     2401 cagataatac cgcaataaca gcgattaaag ctatagtagc tatatattca ccttgcaaag
     2461 ttgtccaaag tttgccaaaa gtatcataat ttgggatatt tgtaatacga tgaaaatccc
     2521 aaatttgagt atcttgtccc attctctcgc taccataagc aaataaactc actacgctta
     2581 ataaaagcgt tacaaatact tttctcataa gcgttccttt cctgtgtaag caatcttcca
     2641 ttccaaactt tccgaaggat ttggaatgcc ataatttcta ttcataagtc tattatgata
     2701 aatctcttct attttagaac tttcacctac taaaagtgct tttgttgaac acatcgcagc
     2761 acatacaggg acttttcctt ctgcgatacg attttgacca taaagttctc tttctttttc
     2821 tgaattcgtt gcttcagggc cacctgcaca catagtacat ttatccataa tgcctttatt
     2881 tccaaaaaca ctatcttttg gaaattgtgg tgcaccaaaa ggacaagcat aaagacaata
     2941 tccacaacct atgcaaattt ctttatcatg caaaacaata ccatcagcac ggatgtaaaa
     3001 acaatccaca ggacaaacga tagaacaagg agcatcatca caatgcatac aagaaataga
     3061 agttgaaact tcttttcctt gaattccttc atttaaagta atcacacggc ggcggcgaat
     3121 atgaatagga agctcatgtg cttcatcaca agctaccgca caaccattac aatcaataca
     3181 acgctcatta tcacaaaaga atttcaagcg ttctttttct aaatttgcaa aatttacctt
     3241 actcattttc catccttact gattctacaa agcccgcctt tagtctctgg aatctgacac
     3301 ataatatcat aaccataatt tgttaccgta ttagcacttt ctccgcttgc ataaggctta
     3361 gttccttctg ggaaattgtg cgttaaatcc acgccttgca taactcctgt aaaatggaaa
     3421 ggcaagaaaa tcatatcttt tgctacacct ggattaacct tcactcttac atgaatttta
     3481 gtgccttctg gagaatgcac ccaaatcata tctcctgctt taatgtcttg ctcttttgct
     3541 aattcaggat tgatctcaca aaacatttca ggtgttaaac gcgttagata catagatgct
     3601 ctattttcca tacctgcacc atttaaattc acaagtcttg cggtaacaag attaagcggg
     3661 aattctttag aataatcctt agcttgttgc acagaaacaa atttagtatc cacgcgataa
     3721 agtgcttttt gatcttcaaa acttggatat ttttgtacca aatcgtttct tggagaatgt
     3781 aaaggctcac ggtggagtgg aattttatct ttaaaagtcc aaactacagc tctagcttta
     3841 gcatttccat aaggaactat gcctttttct atacatttag ttgctatgat attgctatca
     3901 tcataagacc aagttgatcc cattttttct ttttcttgag cacttaaagt aatacctaaa
     3961 actttttcta tattatcttt agtaatttgt ggataacctg tattaatagg cgaatttaaa
     4021 ggtgcatttt tagcaagcaa actctctcct tcatactcaa gtccaaaatt atttctaaag
     4081 cccataccac cttttgctac ttcaatgtcg gtattataaa gtacaggaga acctggatgc
     4141 ttatcactcc agcaaggcca aggaagccca taatactcgc ccgcaacttc gtcttttcct
     4201 tctaaagtta cctcatcaaa tttatcccag tataaagtat gttttttaag cctttcagga
     4261 ctccaaccat taagccctat acttctaact gcttttgcaa tttctcttgt tgcattttca
     4321 ggccaaacga tctcaccttt ttcatcgcgt aaagtcttgg taaagtcttc ataaaagcct
     4381 aattttttag caagctcaaa taaaatttct tgatcttcca tactttcata aagtggatct
     4441 acaactttaa atctccattg cccactacga tttgtagctg ttacacttcc acttgtttca
     4501 aactgtgttg ctgcaggtaa aagataaatt ccatcttttc tttctgcgat aatccctgct
     4561 tcatttacaa aaggatcggc taaaactaaa agctctaaag cttccaaacc ttctttaact
     4621 tttacttgtt gtgcagtcga agtaatacca tttcccataa ctactaaagc ttttaaaggc
     4681 gttcctgcat tatcgatagc atcatttcca tcttttccat ttaaagccgc tgcccaccat
     4741 ctagcaagtg aaagtccagt tttatgcatc caatctttac ttacaaaatt tcctaaaagc
     4801 cactcataat ccacacccca aattttggca tagtatctcc aagtcgcttc atttaaagga
     4861 taataaccag gtaaattttc actcaaacaa gccatatctg aagcaccttg aacattatcg
     4921 tgtccgcgta agatattaac tccaccacca aatttaccta tatttccaag taccatttgc
     4981 acaataggtg ctaaacgtgt atttgaagtt cctacagtat gttgagttaa acccatagcc
     5041 caaataagcg tagttggttt gtttttagct acttcgtgag tgatttgcac caaaagttct
     5101 ttagagatcc ctgtaacatt ttccacttct tcagctgtcc attttgctgc ttcttcacga
     5161 attttatcaa ttccaaaaac tctttcatca agatattttg tatcttccaa gccttcatca
     5221 aaaatgattt ttaacattcc atacatgaaa gcaatgtcag ttcctggacg aattcttgca
     5281 taaatatccg cttttgctgc actttttgta aatctaggat ctacaacgat aagctttgca
     5341 cctttttctt ttgcttttaa gaaatgtcta aaacccacag ggtgatttac cgctggattt
     5401 gctccaatga taatgataca tttacttctt tgaatgtctc caagatggtt tgtcatagcg
     5461 ccataaccaa atgtattcgc cacaccggcg actgttgcgc tgtgtcaaat tctagcttga
     5521 tgatctacat tgttcgttcc aaaaaatgct gcaaattttc ttatataata agcttgttca
     5581 ttattaagtt ttgcagaacc taaaaacata acactttcag gattttcttt acgataagca
     5641 gctagttttt ctccgatctc acttaaagct tgctcataac ttatgcgttt ccattctcca
     5701 ttttcttttt tcataggata ttttaaacgc acatgtgaac gcaccatatc gatcatatca
     5761 gatcccttgc agcaatgtcc acctgaactc acaggatgat cttgagcaat ttcttgacgc
     5821 acccaaacac cattttgcac ttctgcaata atcccacagc ctacagaaca ggctgtacaa
     5881 actgttttta cttttttact accttcatac gcttctttaa gctcatcagc actcgcttct
     5941 cttaaagttt cacttctagc aagcaacggt gttgctaggc ttgaaagtgc tgccatttta
     6001 agaaaagaac gacgcgtaag cttgatattt tcacctacac ttgacattac tcagccttta
     6061 tataataatt ttcccaatta gcacttcttt gaaaaagcac ttcttttttc ttacttttac
     6121 ctttaaccaa atcttttctt tcttcatctt tagctagagc taaagttgtg ctaccaagca
     6181 ctccagcagc ccctaaggca aaagcggatt ttttaagaaa ttccctgcga tttttcacga
     6241 gtcctccttt gtttatttgc ttctcttctt aaaaattctg aacgcgatag atcgttttgc
     6301 acttttttag aatttatttt tgcaggtttt tctacttcaa agcaaagtct ttcaaattcc
     6361 ataaaagcca atgcaatact tgcaatttcc ttatataaat tcgcattttt attcatgaaa
     6421 acatcgccta aaaactcatc aatgctttta ttgatcactt tttcaaaaag ctctttggct
     6481 aaatcatctt cattttgcct taaaaattca ctcatcaaca ataaacaaaa tccaacacta
     6541 tcttcacttt ctttaaaaaa tttttcattg cgtcttattt tacttttgac taaaatttga
     6601 cgcacacaaa gtaaaggatt tgaattttca aaaccttctt ctatgtaaga aaaagtcgtt
     6661 ggaatgctgt ttttaagact taaaaaaagc aaatcgtatt ctttaaaaaa tgcttgtata
     6721 gaattttcat catctaaatg cttaagcaag atatcaaaat ttgattttaa attttcatca
     6781 aataaacatt cttgcattgt ctttaaatac tcttgtaatt ttgacaatct ttcttcagaa
     6841 aatgaaaaaa caaaaagctc tcctagacat tgataataaa gacttctagc taatcttaat
     6901 ttttccaaat ccattaaagc ccccatgcat tcaaaatttt caaaaatagc tttaaatttt
     6961 gcttgaatga atattataca aaatatacct aatattcatt ttaaagccga tttttaaatc
     7021 gatttatctt aatactattt gatttaaaaa tcactgaatt tcaataaaat tccacaagga
     7081 tttaaaatat taaaaaatca taccaaagta ttaaaaatta gatatttgag ttgattttat
     7141 atttgaaaaa ataaaatact ttgcataaaa tttatatctt tgattctctt ccgagtaaaa
     7201 ttaacatttt atgcaaatta taaataatac taatttctta aagaataatc cttataagaa
     7261 aattctctta tcatttgaag ttcattttta cggtctaaaa acatgagatt tggaagtctt
     7321 atgccattaa aagttgtgtt tttcacaatg gtgtaatgaa tttgatctaa aaaaacaatt
     7381 ttatcgccga ttttaagctt tttatcaaag gcatattctc ccattacatc acctgctaaa
     7441 caagtatttc cagtaagtaa ataggcaaat tcgttttctt ttaagtctga aattttttca
     7501 ttttctcttg tggccaaaat tctagcattt aaaacttcac ttgtataagg catgatgata
     7561 gtatctggca tatgtgcttc gcttgaagta tctaaaatag caatttgttt ttcattttct
     7621 atgatatcta ctacactagc aaccaaattt cctgtttgcc aacccactgc ttcacctggt
     7681 tcaagataaa cttgtacacc atatttatcg ctgaaatttt tacacaaagc aataagtttt
     7741 tcaacatcat agcctttttt ggtgatgtga tgtcctcctc caaaattcac ccatttcatt
     7801 tgccctatcc atttaccaaa tttctcctca aaagccttta aaacagcctc taaagcatca
     7861 gcactttctt cgcaaagtgc gtgaaaatga agtccttcta tagcatttaa atccacattt
     7921 tcaaaatctt tagcacgaat tccaagtctt gagtatcttc cacaaggatt gtaaagttct
     7981 tttggggcta gagaaaattc aacattacaa cgaagaccta aggaattttt ttgtgtttta
     8041 gcttgaaatt tatgaaattg agctaaagag ttaaacacta tatgatgaga taaactggct
     8101 atttcaccta tttcatcttc tttaaaagca ggcgaataag tatgaatttc tttatccatg
     8161 tattctttag caaattttgc ttcccaaagt ccgctacaag tgcaaccttt taggtattct
     8221 ccgacaattt tcatagctcc tgaaaaagca aaacctttta aagctaaaag cactttagca
     8281 ccactttttt caccaacact tgctaaaagc tcacaatttt ttcttaattt atcttcttct
     8341 aaaatataag ctggagtttg aattttttca taaaacatta tttttccttg attaaattgc
     8401 taaaatcata acaaaattaa accaaatttt caaaataaat atttactaaa actaaaaaaa
     8461 taatgactat aatataaaaa atcaagcaaa aggaaaaact aatgaataga agaaattttt
     8521 taaaatttaa tgcactcact ctagcaagta tgggtgtagc ctatgcaaat cctatgcacg
     8581 atatgcactc catgcataaa aatcattcta taaatcatga cttagatact tcttttatca
     8641 actttgctcc aaaaaattta aaacttttag atccaaaaca attcccccaa ggagaaattt
     8701 taaaagcctt gcctttactc aaaaatgaaa gtaaagaaaa aaatattttt cgtgctaccc
     8761 tagaaatcaa agaaaatcat atagaactta tcaaaggtaa aaaaacctta ttttatactt
     8821 acaatggcct cgtgcctgct ccaaaaatag aagtttttga aggagataaa cttgaaattt
     8881 tagtcaaaaa caaactcaaa gaagctacaa ctatacattg gcatggcgtt cctgtaccac
     8941 ctgatcaaga tggaagccca catgatccta tcttagcagg ggaagaaaga atatatcgtt
     9001 ttgaaattcc tcaagatagc gcaggaactt actggtatca tccacaccct cattataccg
     9061 cttctaaaca agtttttatg ggtttagcag gggcttttgt gatcaaagca aaaaaagatg
     9121 ctttaagtca tttaaaagaa agagatttga tgattagcga tttgcgtctt gatgaaaacg
     9181 ctcaaattcc gaacaacaac ctaaatgatt ggctaaatgg tagagaagga gaatttgtac
     9241 tcattaatgg acaatttaaa cctcaaatca aactcgccac aaacgaacgc atacgcattt
     9301 ataatgctac tgcggcaaga tatttaaatt tacgcataca aggagctaag tttatacttg
     9361 ttggtactga tggtggactt atagaaaaaa ctatttataa agaagaactt ttcttaagtc
     9421 ctgcttctcg tgcagaagtt ttaatcgacg ctccaaaaga tgggaatttt aagctagaaa
     9481 gtgcttatta tgatagggat aaaatgatgg taaaagaaga acctaatacc ctatttttag
     9541 ctaatattag tctaaaaaaa gaaaatgtag aacttccaaa aaatttaaaa attttcaaac
     9601 cttcagaaga acctaaggaa tttaaagaaa taatcatgag tgaagatcat atgcaaatgc
     9661 atggtatgat gggaaaaagt gaaagcgaat taaaaatcgc tcttgcgtct atgtttttaa
     9721 tcaatggcaa aagctatgat ttaaaacgca ttgatttaag ctccaagctt ggagtagttg
     9781 aagactggat agtgataaat aaatctcaca tggatcatcc tttccacata cacggcacgc
     9841 aatttgaact catctcatca aaactcaatg gcaaagttca aaaagccgaa tttagagcct
     9901 tcagagatac tataaatgtg cgtcctaatg aagaattaag acttagaatg aaacaagatt
     9961 ttaaaggact tagaatgtat cattgccata ttttagaaca tgaagattta ggaatgatgg
    10021 gaaatttaga agtaaaggaa taaaatggta aaagtggaat ttttaggccc tataaataaa
    10081 gaaaatttag aacttaaggt aaaaaattta aaagaattaa aagaaatttt gcaaaaagat
    10141 gagagtttaa aagaatggct agaactttgt gctgtatctt taaatgatga aatcattttt
    10201 gatgaaaaca ccaagttaaa agatggtgat aaaatagcac ttttaccgcc agtttgtgga
    10261 ggctaaatga aacattttac actttatcaa ggctctttag atattcctaa aatttatagc
    10321 caatggtatg aattttccaa ggataaaaac tgcggtgctt tactgacttt ttgtggtatt
    10381 gtgcgtgaag aaggaggtat tgaggcactt agttttgata tttatgaacc gcttttaaaa
    10441 aaatggtttg atgagtggca aaaaagagta gattttgatg gtattagctt gctttttgct
    10501 cactctatag gcgatgtggc ggttcatgaa agctcgtatt ttgcaggaat tttaagcaaa
    10561 caaagaaaat taggacttaa acttcttaat gaatttgttg aagattttaa agcaagtgcg
    10621 cccatttgga agtatgatgt gataaacaaa gaaagaattt atgccaaaga aagatcaacc
    10681 aaactttgcg gtgcaggact tttaaaagga taaaaaatgt taatgtctta tgaagaaagt
    10741 ttaaaaattt tacattctca tattaaaact tatgaaaaga ttgaaaaaat agctcttaca
    10801 gagtgtttag gacgcatttt agctcaagac ataaaagccc ctaaaaatca gcccgaattt
    10861 ccaacttcgg ctatggatgg ttatgcgatc aaatttgaag atcaagataa gcctttaaaa
    10921 attttaggta tcacacctgc gggtactatg ccacaattta gcgtgcaaaa tggtacttgt
    10981 gtaaaaacct ttacaggctc actcatgagc gaaggaagcg atactttagc ccctgttgaa
    11041 aatgtacgcg tagaaaatga tactcttttt atagaaaaaa aagttcccca agcttttgcc
    11101 gtgcgtgcgg taggagaaaa ctataaaaaa gatgaaattt tactcaaaaa aggcacaaag
    11161 ttaaattata gcgagatagc tcttttagct gaacttggat tttttcacat tagtgtgttt
    11221 ataaagccta ttgtaggggt tttaagtagt ggaagtgaga tcaaagatct aggagaagcc
    11281 ttggaaaatc ctgctcaaat ccgctcttca aatcatatcg ccatagctaa tttagctaaa
    11341 aatttaaatt gcgatacaag ggtttttcct cttttaaaag atgatgagaa agccactttt
    11401 tccacccttg aaagtgcttt gcaaagttgt gatattttgg ttacaacggg cggggtttct
    11461 atgggagatt ttgacttttt aaaaaaagcc atcaaagaat acgaaatcat catcgataaa
    11521 gccgacataa aaccaggtag acatatcaaa atagctaagg ctaatgaaaa attcatcatc
    11581 gccttaccag gttttcctta ctcggctatg gtaatgttta atctttacac aagagagatt
    11641 ttaaactctt ggttacttca gcctaaagac tatatttgca aagccttttt acaaggaagt
    11701 tacaagaaaa aaacacctta tttggaattt gtcgcttgta acataaagtt tgaaaatgga
    11761 cgcattttag ccaatcttga aggcaaaaaa aaaggctcta gtgcgattat aaacaatctt
    11821 aacaataaag ctgcccttat ggtggtgcca aaagaatgtg aaattttaga aaatgaaagt
    11881 ttagtggata ttatctttat gccttaaaat tatttaaata attttatttc gattttaatc
    11941 aaccctaaat ttcaataagt ttcaaatccg caacctcctt ttagtggagt aattagccct
    12001 agcggagttt caatccacta gggtttattt tagtcccttt ttaaatttct ttatggtaaa
    12061 atagatattt accagataat gaaaatttcg gggttttttc atgaaaaata gcaaaaatta
    12121 tgctataatc tcataagaaa tttaaaaagg gactaaaata aagagtttgc gggactctgc
    12181 ggggttacaa tcccctaaaa ccgcttttaa aattcaaata aattttgctg atgatatttt
    12241 tcttgttttt tgtttatttg aatttcttca ttatttgaat ttttatattt aaattctcca
    12301 tgactatcta tatcaaaaag cgttaaattg gtttcgttat taactttttc gttaaaaact
    12361 atgccaccaa gcaaaagctc cattttatca aattgctttt cagtgatgat taaagccctt
    12421 acatttccat aaggtggcaa aatctttttt acattttcaa tagaactttt tgcagaactt
    12481 aaacccttgc aaatacgcat ataaacacta aattgcagca taaaataacc taattttata
    12541 agattatttc taaatttact tgctagtttt tgctcttttt tacttttagt aggtacatca
    12601 aacatcaaaa gcacacgcat aaatttatct tcaatcatca aatttcacta tctttagttc
    12661 atcttcatac aataaagcat ttttaaaatt tgccacataa tgatttatcg ctctgtttaa
    12721 aggataattt tgcccatcaa aattgatttt gctttgtaaa ttgccaatca acgctctttt
    12781 gtcatctttg cttaaaaact cactttcacc cttaagcttt aaaacacaat catcaacact
    12841 agccctaaac acttctatca aatcatcaca aagcgcaaaa gaattataaa tattatcgtg
    12901 ctttatgcca agccaaggca aaagcccact tatgcaaact gctctaataa tacaagccct
    12961 aatgattgca tagccataat ttaaagcaga attttcaaag caaagctcat ctcttgaaaa
    13021 agaagtacca aacaaagttt taaaataaag cgccgccgca acagcttcaa tatttttact
    13081 atcatttaag cttacttttt tagccaaatt tataagctca ttgctttgct ctattttatt
    13141 gtattttttt aagataaagg cttgatttag gattttattt ttaatgattt tttgccataa
    13201 aatagccttt ttttgagcac ttacattcat ttgctctttt gcgatttttg cactttgaaa
    13261 atgccctaaa aaaggagtaa aaacaccatt tatactatga gtttcatcgc aggttagcaa
    13321 gatgatttta tgccttgcaa aagcgttaaa aagtgcggaa ctaatgctta tttgtaagct
    13381 ttctaaaacg atgatattta tatcttttaa aaacaatttg gctatatttt catcttgctt
    13441 aatcacaaga tgatttagct ctaaatttag cttggcatta gagctaataa acagtgtttt
    13501 aaaagcttca tcgtaactca ttttttaaaa tcttctcttt gtctaaactc agcctttgta
    13561 acttcctcaa gtgctgaaac tatgtatttt tcaaatactt ttagattttg aattcctatg
    13621 ctttttgcga ttacttcttt ttcatttgca tttttaaaca atattttttg atttttgctt
    13681 agcgtttcaa atttattatc gtgttttgaa acaatcaaac taacagtaga gcttgtaaaa
    13741 gcattataat aaacaaattc tggctcttgc atatctttag tttgaattaa aatcaaacta
    13801 tctttgtata aagaaaagca aaactcataa ttttcatcca ttaaaatcca gtcttttatc
    13861 tcaccttttt tacttcgtgc tacagcttta tttggtaata cttttaaagc aaaatccata
    13921 gtataaattg gcacagcata aaatttattt gtctttttgt gtttaaaaat atccactcta
    13981 aacatatcgc catttttaac tattttacca tttactttgc ggattttacc aagctctagg
    14041 gcttttaaaa ctccttcttt tccgccgtat gattgataga attcttcttc ttttctaaat
    14101 gtttcttcat gtaaagctcc acttggcttt tttctctcag gttttgagac aaaaatttca
    14161 tcaattttat ctaaaacctt ttgcctaaaa ccactaaaag gctcaaaaaa cttccttttg
    14221 tttttataat ctaattcact aatttttttt gcataaagtt ctgcactgtt gctttcttgc
    14281 tcttttttaa aatctgaaaa agcctttacg atagagttgt ttgcataagc aataattact
    14341 gcatcgatgg cgtgatgaag atgattattt ctatccttag tgctaaagcc ccaagtgtgt
    14401 cttaaagccg atgttagcat accgcttttt gcttctacat gcacttttga gcctttgtgt
    14461 gtgtcgttta actttgtatt ttcatcatcg cttaaaggta aaaaatctaa ataatcttta
    14521 gtatagttta aaacaagcct tgcgatgtag cgagtatcgt ttagatttct atctttaaag
    14581 tctttttgct ctttgtcttt gtaattttta tctaaaattc ttttttgctt tttagtaggt
    14641 aaattttttg ctaaaacttc aattttctgc cattttgcac tatcattgcc aaaggcttca
    14701 aagggggttt gattaagttt ttcttgattt tgcttggtaa aaactaaaac tttattcata
    14761 taagaatcat caaaacttct agaataaggg taaatgtgat caatttcaag cattttttca
    14821 tcttgcaaat cactaatttt aatcttttct ccactataag cacaaaattc tttttgttct
    14881 ttaaataatc ttaattttaa aatatttttg ctatttattt ttaagcctag tttttcacat
    14941 tcaagttcgg cgtctttttt ggccttgtag ttttcatttt gctctttttc tattttagct
    15001 ctttggctgt aatttttacc tacttctctt gctaattcaa tgtttatttt atgcactttg
    15061 ccgtattttt taagtaaagc atttaagacc tttctgtatt ctttaatcgc tcttaaaacc
    15121 acaggattag ttacctcatc tttataataa gtttcattaa atgcgggtaa aaaatctttt
    15181 ttatcttcat tgattgctac ttttaaatta agctcattac aagcttcatc gtatttttta
    15241 ccttcaagca ttaaaggagt gataagtttt aaggctttaa aacttatatt taaatggtct
    15301 ttaaattcca atttgcttaa actatcaatt tgattttgat ttaaatcata ttttgctaaa
    15361 gcctttttaa gcttaatctc atcttttata agggtaatat cttttgctat ttcatttaaa
    15421 tcatcttggc ttaaactatg atcacctagg gcttttataa attctttata ttttttaaac
    15481 tcaataaaat aagttccttt ttccccttta aattcataat catcgcttaa gcccaaaagc
    15541 ttttttgttt gtttataagt tagagtgccg ttttttaaaa cttcattcaa aagggcgttt
    15601 aaatcatctt ttgtatataa aattccttca gtatttttaa gattgtttaa aagattgata
    15661 attcttgtaa gtgctacaaa cataaaagct aagggcgaat tttttggcgc tcttttttca
    15721 tcggtaaaaa aactacaatt tcccaccaaa tgagaaaaat cttttaaagc ccttttataa
    15781 aatgctacac taagcacctc ttcttcaaat tttttgaaaa agaaaagcca aattctcttt
    15841 gttttttaaa aataagcttt aattcatctt ttaaaaaact ttgcgctatg cagcgttcat
    15901 aactttcttt tttatttcta acatttgtaa attctttgga attttctttg aatttttgaa
    15961 aatactcttt ataaagatac tcgcccacac tttgataatt tgctagtttt tcttcatttt
    16021 gcttgatagc ttttaaaatt gcaccttttt ctttatcatc actattttta atatcatcat
    16081 agccacgcct ttttgcaata tgtaaaatca ctcttgcaaa atcttgctta cttaaaagct
    16141 cgtttaaagc tctaaatctt aactcataag ggctaattaa agatccttta taagccttgg
    16201 ctaaaccttc atcaaagctt tgataatctt cgtaatttaa cttaaattca tttgcgatta
    16261 aatgttttaa gtgatttagc cttgctttgc gtctagcaag gcgttttcta gcacttcttg
    16321 caaggcgtct tggcaaggct aaggattctc ctgttttggg attttcagcc tttgtaaaaa
    16381 tcctaactcc acaatctttt aactcatcat tttcactaaa tgcccagcca atagagctta
    16441 ttcctatatc aaatgccaaa attcttgcca cactagatcc tttttaatat ttatgatttg
    16501 tgtataatta taatacaaaa atcatttttt taaacaaaca taaacttt
//
LOCUS       DARGBD010000030        16247 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.030, whole genome shotgun sequence.
ACCESSION   DARGBD010000030 DARGBD010000000
VERSION     DARGBD010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16247
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.030"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..270
                     /locus_tag="SFZ04_000811"
     CDS             <1..270
                     /locus_tag="SFZ04_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEG8065103.1"
                     /translation="LNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEELNNFLKEY
                     LSFLKYEKNEEILQQSFRNLNGIFGNKNFTAYDLGFSIQNNDEPF"
     gene            352..624
                     /locus_tag="SFZ04_000812"
     CDS             352..624
                     /locus_tag="SFZ04_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEG8065104.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            611..1162
                     /locus_tag="SFZ04_000813"
     CDS             611..1162
                     /locus_tag="SFZ04_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8065105.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANNRFIKLQEKLMGFKSEIKT"
     gene            1146..2429
                     /locus_tag="SFZ04_000814"
     CDS             1146..2429
                     /locus_tag="SFZ04_000814"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEG8065106.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPNLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKRALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            2433..2744
                     /locus_tag="SFZ04_000815"
     CDS             2433..2744
                     /locus_tag="SFZ04_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEG8065107.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKI
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            2741..3835
                     /locus_tag="SFZ04_000816"
     CDS             2741..3835
                     /locus_tag="SFZ04_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEG8065108.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNAKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            3832..4677
                     /locus_tag="SFZ04_000817"
     CDS             3832..4677
                     /locus_tag="SFZ04_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEG8065109.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            4687..6585
                     /gene="tkt"
                     /locus_tag="SFZ04_000818"
     CDS             4687..6585
                     /gene="tkt"
                     /locus_tag="SFZ04_000818"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEG8065110.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFLLSRQKLKALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LVNFILSK"
     gene            6587..7696
                     /locus_tag="SFZ04_000819"
     CDS             6587..7696
                     /locus_tag="SFZ04_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8065111.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNLRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALIVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            7697..8419
                     /locus_tag="SFZ04_000820"
     CDS             7697..8419
                     /locus_tag="SFZ04_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG8065112.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNINEKDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            8422..9312
                     /locus_tag="SFZ04_000821"
     CDS             8422..9312
                     /locus_tag="SFZ04_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEG8065113.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGVKAPVRLLGVEVGSVEEIGIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFVQLQGGSKNSKDLVSIHGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKDIKESTMILKNFIKKADEKLNTYDDIKASLIQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            9312..9911
                     /locus_tag="SFZ04_000822"
     CDS             9312..9911
                     /locus_tag="SFZ04_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HEG8065114.1"
                     /translation="MLKQLFYILTFIFILCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYALESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIIFWVNSNLS"
     gene            9967..10467
                     /locus_tag="SFZ04_000823"
     CDS             9967..10467
                     /locus_tag="SFZ04_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065115.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYGGVLAYIQDKRDEIKIILSELATAITMGETMDNAGIYNSTMD
                     FKNLFK"
     gene            complement(10836..11594)
                     /gene="map"
                     /locus_tag="SFZ04_000824"
     CDS             complement(10836..11594)
                     /gene="map"
                     /locus_tag="SFZ04_000824"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEG8065116.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYSFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPADKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(11604..12347)
                     /locus_tag="SFZ04_000825"
     CDS             complement(11604..12347)
                     /locus_tag="SFZ04_000825"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEG8065117.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRTKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVESLKNTANIWLNL"
     gene            complement(12349..12807)
                     /locus_tag="SFZ04_000826"
     CDS             complement(12349..12807)
                     /locus_tag="SFZ04_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEG8065118.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNSSYWKARYIGARRY"
     gene            complement(12816..13985)
                     /gene="nhaA"
                     /locus_tag="SFZ04_000827"
     CDS             complement(12816..13985)
                     /gene="nhaA"
                     /locus_tag="SFZ04_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG8065119.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIAAFVVAGIAILAMLVLNILGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIITAFFIPMQTKNGEAFLEEIYESLKFWLAFVILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(13982..15130)
                     /gene="nhaA"
                     /locus_tag="SFZ04_000828"
     CDS             complement(13982..15130)
                     /gene="nhaA"
                     /locus_tag="SFZ04_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG8065120.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSAIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIVK"
     gene            complement(15273..15455)
                     /locus_tag="SFZ04_000829"
     CDS             complement(15273..15455)
                     /locus_tag="SFZ04_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HEG8065121.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
     gene            15778..15981
                     /locus_tag="SFZ04_000830"
     CDS             15778..15981
                     /locus_tag="SFZ04_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065122.1"
                     /translation="MLLNTPCRGIIDTNFESKRISITSTLKFQEKKEKVEAKAEKEEA
                     NKDNSNSTNTNTNKKDKLLDISA"
BASE COUNT         6135 a         2517 c         2447 g         5148 t
ORIGIN      
        1 ttaaacaatg taaaaattaa aaattctaca ctcgcattaa aaaaacaact ttttacgctt
       61 attgataaaa atttaaatct tttaattaaa aatttaaata ccgaagaatt aaataatttt
      121 ttaaaagaat atttaagctt cttaaaatat gaaaaaaacg aagaaattct gcaacaatca
      181 tttagaaact taaatggaat ttttggtaac aaaaacttta cagcttatga tttaggattt
      241 agcatacaaa ataatgacga acctttttaa tttatttaaa tttcaagcct taatttacct
      301 ttttttaaac acaatcacgc taaagtatat aaaaattttt aaggataaat tatgatgcct
      361 tttagtgatg aagagcttat aaatcctgtt aaagcaagtt tagaaaagag cttgcctatg
      421 cttgaacgtg atggcggagg gcttgaattt ttaggaatta aaaatgggat cgtttatgtc
      481 catttaatag gagcttgtaa aggctgtgca tcgagtggaa caacgctaaa atacggtctt
      541 gaaaggcaac ttaagattga tattcatccg gaaatcacta taatcaattt aaacggcgga
      601 gcagacgaat ttgcaaaatt ataaaaaact tggaattgaa catttttaca agaaagattt
      661 taaaactgca aaaatgtatt tttctatggc ttatgaaaaa cgcaaaaata aacgcttgct
      721 aaattttatc tgcctttgtg atcttgcttt aaaatctcct aaagaagctt ctttactttt
      781 tgatttttat atagaacatt acaaaatctc tagcattgat aaagacttag aagaaatttt
      841 aagtacaatt gaatttaaaa aacaggaaaa caaacaggaa aacgaatttg aagatgggca
      901 tgcgttaaat tatcaagatt ttttaaaaag cgaagaagaa cttggctttc aaaaaagttt
      961 tgaaaatatc attaacagca ctaaattagt tattgataat cgtgatgatt ttttagattt
     1021 tttggaaaaa ttacttgata atggctataa agatatgact ttaaattaca tagaaaatgt
     1081 tatgcctcat ttttgggcaa ataatagatt tatcaaactc caagaaaaac tcatgggatt
     1141 taaaagtgaa attaaaactt gaaaattcat tcattacaga taacacctta gagtgtgaaa
     1201 aagaatgctt ttttttgcaa accacacaaa atgctaaatt tcacgctcaa gccttagaaa
     1261 aaggtgcaaa aatcattgat gtaaatgagt gtaaaaaact tttaaaaatc gatgaaaaga
     1321 ttcaaatcat aggaatcaca ggaaccaatg gcaaaaccac aaccgcagca gcgatttatt
     1381 ctatcttatt ggatttaggt tataagtgtg ggctttgtgg gacaagagga gcttttatca
     1441 acgatgaaca aatcgatgaa aaatccttaa ccacctcccc tattcttaaa accttagaat
     1501 acctacaaat agccactcaa aaaaaatgtg attttttcat catggaagta agctcacacg
     1561 cgctcgttca aaaccgcatc gaaggcttaa attttgctgc taaaattttt accaatatca
     1621 ctcaagatca tttagatttt cacggtactt ttgaaaatta taaagaagca aaagaacttt
     1681 tttttaccga tgagagttta aaatttatca acaaagatgc tttggctatt aaatttaatg
     1741 tgcgtaatgc ttttacttat ggcatagaaa atcctgcttt atatcaaatc aaagcttatt
     1801 ctttagaaga aggcattagt gctattgtaa caaataaaaa tcaaactttt cacatagact
     1861 cgcccttgct aggacttttt aatctttaca atcttctagt tgctagtgct tgtgtgaatg
     1921 aactcgtaaa gcctaattta aaagacttgg aaaaagctat cagtggattt ggcggggttt
     1981 gtggcagggt agaacaagta gcaaaaggtg tgattgtaga ttttgctcat acgcccgatg
     2041 gcattgaaaa agtgcttgac actcttaaaa ataaaaaact catcgttgtt tttggagcag
     2101 gtggagatag agataaaacc aaacgccctt taatgggaaa aatcgtcgaa cattttgcaa
     2161 aaattgctat cattacaagt gacaatccac gcagcgaaga accaaaaacc atcatggaag
     2221 aaattttatc aggctttact aaaaaagaaa aagttttaat gatagaagat agaaaagaag
     2281 ctataaaaag agctttagaa ctaaaagaaa atgacgattt agtcgttatt ttaggcaaag
     2341 gtgatgaaac tactcaagaa attaaaggga taaaatatcc ttttagtgat aaagtagttg
     2401 ttaatgaaat tttaaaaaat caaggataat caatgtttga aaatatggat ttttctaaaa
     2461 tgggagaact tttaaatcaa gttcaagaaa aagcaaaaaa tatagaacta gaacttgcaa
     2521 atcgtgaatt tagtgccaaa agtggagcag gacttgttaa aataagtgcc aatggaaagg
     2581 gtgaaattat cgatgttagc attgatgatt ctttacttga agataaagaa tccttgcaaa
     2641 ttttacttat ttctgcaatt aatgatgttt tggctatggt tgcacaaaat cgttcaagta
     2701 tggcgaatga tgttttaggc ggttttggag gtatgaaatt atgaaaaaaa ttttaattat
     2761 ttgcatgctt tttactttgt cttttggtat agaaagacct aaatttgaag attttttagc
     2821 aggttatgaa agaaataagg caagcatgct caactatgaa ggaatgccag cttttgcact
     2881 cagtgaaaat ttacttgctg tgttaaaaca gcctaatgct aagcttaaca aatatgtaaa
     2941 atacgatcca tttttaaatt tatatcttgt aagaactgac tttagcctaa tccctactcc
     3001 tatgggtgat gaagaaaaac ttactcgtaa tgattgggtt ggaatttggg atcctaataa
     3061 accttatata gggcatatta agtatttagc tcaaaatatt gatgaaaaag atcaacttga
     3121 ttttaattct aaaataggac ttttagggac tccatgctgt gaaatgatgg ggattgcttt
     3181 aaataatagc tcttttatag gcaatcgcta tttaaaacat tttatgaaat ataacgatgt
     3241 ttattggggg gatattggcg ttgattttgt tgttcgagaa aataaaattt atgttaacaa
     3301 tgtaagaaaa aatccacaat ttttaatcaa cgatcaagtt ataagtgttg atggcttgcc
     3361 cgccaatgat ttaagaaaac tcaatgaaaa aattcttttt gcagatcgcg gaagcactct
     3421 ttattttcaa gtgttgcgtg ataatatgga tttaaatatt tctactgaag tttttgcaaa
     3481 agatttgagc aaatttaacc ttcctgattc taaaccaaaa ccaaaaatta caaatttcac
     3541 aagcaatctt ggtttaacgg ttaatactag tcttgttgta accaaaatag atccaaaatc
     3601 aaaagcatca aatgcaggat ttatggtagg agataaaatt ttacgcgtta ataatattat
     3661 tttaaataat tttaaagaat tacaaaatat tttaagtgct ggtaatgact ttagcatctt
     3721 aattgaacgc aaaagtacta aattaccttt atcaaatttc aacaatgaac taggcggaaa
     3781 tgccaactca ggtggcgatg gtaaatttca atttttcata aggcttacta agtgaattta
     3841 aaagaacttt ttatccatca cttagaaaaa aatctaccta aagttgaaag ctttcatcct
     3901 ttttttaatg aagctttagc acttatgtta aaagcggggg gaaagcattt tcgcgcacaa
     3961 ttgcttttaa gcgtagtaca aagcaataaa cctgaacttt taaatcaagc tttagatgtg
     4021 gctttagctt tagagtttat ccatacttat tcactcatac acgatgattt acccgctatg
     4081 gataatgcag actttagacg aggaattcca accttacaca aaagctacga tgaaactaca
     4141 gccatattag tgggtgatgc tttaaatact gaagcttttt tagttctaag tcatgctcat
     4201 ttaaaagatg aaatcaaaat caaactcatc aaaacccttg cctttaatgc aggacttaat
     4261 ggaatggtca taggacaagc tattgattgt ttttttgaag acaaaagact gagtttaaat
     4321 gaacttgagt ttttacacac acataaaacc gcaagattaa tcgctgcagc tttaaaaatg
     4381 ggttgtgaaa tttgcgaact taacaacgaa gaaagcaatc aaatttacaa acttggttta
     4441 aaactaggac tgatttttca aatcaatgat gatattatcg atgtaaccac aagtcaagaa
     4501 caaagcggaa agcctactaa caacgatatt cataaaaatt cttttgtcaa tttacttgga
     4561 cttgaacaag ccataaaaac aaaagaaaat cttcttagtg aatgcgaaca agacttagaa
     4621 aaacttaatg aaaaactcgc acaaatgata caaaatttaa taattcaata cttataaagg
     4681 caaaaaatgg acattcaaat tttacaagaa caggcaaata ctctaagatt tttaagtgct
     4741 gatatggtgc aaaaagcaaa ctcaggacac ccaggtgcac ctttgggttt agcagatatt
     4801 ttaagtgttt taagttatca tttaaaacac aatcctaaaa atcccacttg gctaaaccgc
     4861 gatagacttg tattttcagg cggacatgca agtgctttgc tttatagttt tttacattta
     4921 agcggctatg acttaagctt agaagatctt aaaaatttcc gccaacttca ttctaaaacc
     4981 cctggacacc ctgaaatttc aactcttgga gtagaaatcg ctacaggccc tttaggacaa
     5041 ggcgttgcca atgctgtagg ctttgctatg gcagcaaaaa aagcacaaaa tttgctaggc
     5101 agtgatttaa tcgatcataa aatttattgt ctttgcggag atggggattt acaagaaggc
     5161 atttcttatg aagcttgttc tttagcagga cttcacaaac ttgataactt catacttatt
     5221 tatgatagca acaatatctc catagaaggc gatgtaggtt tagcctttaa cgaaaatgta
     5281 aaaatgcgtt ttgaagcaca aggatttgaa gttttaagta taaatggaca cgattatgaa
     5341 gaaatcaata aagccttaga acaagctaaa aaatccacaa aaccttgtct tatcatcgca
     5401 aaaacaacta tagcaaaggg tgcaggagag cttgaaggca gtcataaaag ccatggcgca
     5461 cctttgggtg aagaagtgat taaaaaagcc aaagaacaag caggttttga tccaaatatc
     5521 agttttcata tcccacaagc aagcaaaatc cgctttgaaa gtgctgtaga acttggggat
     5581 ttagaagaag caaaatggaa agataagctt gaaaaaagtg ctaaaaaaga acttttagaa
     5641 aggctattaa atcctgattt taacaagata gcttatcctg attttaaagg aaaagatctt
     5701 gctacaagag atagtaatgg tgaaatttta aatgttttag ctaaaaattt agaaggattt
     5761 ttaggtggaa gtgcagactt aggcccttcg aataaaacag aacttcacag tatgggagac
     5821 tttgtagaag gtaaaaatat ccattttggt atcagagaac acgctatggc agcgattaac
     5881 aatgcttttg caagatatgg aattttctta ccattttcgg caactttttt catctttagc
     5941 gagtacttaa aacctgccgc aagaatagca gctctaatga aaatcaaaca ttttttcatt
     6001 ttcacacacg atagcatagg cgtgggcgaa gatggaccaa cacaccaacc tatagaacaa
     6061 cttagcactt ttagagctat gccaaatttt ttaaccttta gacctgctga tggggtggaa
     6121 aatgtcaaag cttggcaaat agccctaaat gctgatattc cgagtgcttt tctgctttca
     6181 cgccaaaaac tcaaagctct aaatgaacct gtttttggag atgtaaaaaa tggagcgtat
     6241 ttactcaaag aaagcaaaga ggctaaattt acacttttag caagtggaag tgaagtttgg
     6301 ctttgtttag aaagtgcaaa cgaacttgaa aaacaaggtt ttgcttgtaa tgttgtttcc
     6361 atgccttgtt ttgaactttt tgaaaaacaa gataaagctt atcaagaaag attgttaaaa
     6421 ggtgaagtta taggtgttga agcagcacat tctaatgaac tttataaatt ttgccataaa
     6481 gtgtatggca tagaaagttt tggagaaagt ggcaaagaca aagatgtgtt tgaacacttt
     6541 ggatttagcg tttcaaagct tgtaaatttt atccttagca aataaaatga atacaaattt
     6601 caaatttcaa aataacactc tttttatctt tggaatttgg gataaaacaa gcatttataa
     6661 gttaaaaata aaagattttt tagctttgat ccaaagcaag gaagtgattt ttgattttaa
     6721 agatctaaaa gcaatcgata ccgctggagt gagatttttc cttgctttgg aaaatgatct
     6781 taaagataaa aatattaaaa tcaccaaaga aggcttaaat ttacgctttc aaaccctttt
     6841 tgaactttgt gaaaaaaact accaaagact aagcaaaaca aaaaaatcac ataaaaattt
     6901 cagtgaatac tttatcgatc ttggaaaatt aagtttagaa cttttaaaaa ttttaagaaa
     6961 attcatcaat ttcacaggag cttttttcac aagtcttttt ttatgcctta aaaatcctaa
     7021 aaattttcgc tttattgctt ttttatatca tatagaaaat tctgctttta aagctttgcc
     7081 tatagttatt ttaaccgctc ttttagtagg agtggtttta gcctatcagg ctgcttatca
     7141 actcgcacaa tttggagcca atattttcat agtggatttg atgggaattt cagccactag
     7201 agaacttgca cctttaatcg ctgccatagt aatcgcagga agaagtgcaa gttcttatac
     7261 cgcacaaatt ggagtgatga aaattactga tgaaattgca gctatgaata ctatgggttt
     7321 tcgttctttt gaatttatta ttattccacg tgtcatggct ttgatagtgg ctatgccttt
     7381 aatcgttgcc attagtgatg cgatcagtat tataggtgga atgatggttg caaaattaaa
     7441 tcttgatatt tcttttgctg aatttttaag acgttttaga gaggctgtag atataaaaca
     7501 tatctttata ggacttgcaa aagcacctat ttttggattt ttaataggac ttattgcttg
     7561 ttttcgtggt tttgaggtaa aaaacactac acaaagcata ggaatttata caacaaaaag
     7621 cgttgtaaat gctatttttt gggtgatagc ttttgatgct ttattctctg ttgttttaac
     7681 ttctgcagga atttaaatgg ttattaaagc gcaaaatatc attacaaaat ttggagaaaa
     7741 aattgtccat gatggcgtaa gttttgaaat caaaaaaaac gaaatttttg gtattttagg
     7801 aggtagtgga agtggaaaat ccgtcctttt aaaacaaatg cttatgcttg aacattttga
     7861 tggtggagaa tatgaaattt taggctataa acttaaaaat atcaacgaaa aagatgcact
     7921 tgctttgcgt aaaaaatggg gtgtggtttt tcagtttgct gcacttttta gcttttttaa
     7981 tgtttatgaa aatatcgcca ttcctttaaa agaatacact catttagatg aaaatagcat
     8041 acaagaactg gttttaatga agctaaaaat ggtaggctta aacgaaagtg ttttaaaaca
     8101 atttccaagc gaacttagtg gcggtatgca aaaaagagtg gcaattgcta gagctttagc
     8161 acttgatagt aaattgcttt ttttagatga acctacttca ggacttgacc ctcatagtag
     8221 tcgtgaattt gacgatttgg ttttagagtt aaaaaaaagt tttgatctaa atatcatttt
     8281 ggttacacat gataaagaaa gtatgaaaaa tttactcgat cgctttatca ttttagaaaa
     8341 taaaaaagtt ggattttgcg gcacttatga agaattacgc ttgcaaaatg aacgactttt
     8401 taaaagattt atggagtaaa agtggaaaat agagcaaatt atttttttgt aggacttttt
     8461 gtttttggag tattttttgc aagccttggt ttcatacttt ggcttggtgg atactctaaa
     8521 gaagaaagtt ttaagtatta tgaaattcac acacaagaat ccgttgcagg acttggcgta
     8581 aaagcacccg taaggctttt gggcgtggaa gtaggtagtg tagaagaaat tggcatttat
     8641 aatcaagatg aactcggcgt taacatacgc attaaggtta aaaataacac ccctataaaa
     8701 gaagatactt ttgctacttt gcaacttcaa ggtattacag gacttaaatt tgtccaactt
     8761 caaggcggaa gtaaaaatag caaagatcta gtatctatcc acggaaaact tccggtcatt
     8821 ccttttaaag aaagtttttt agcgaccata gacagacaaa gtgaacatat tttttctttg
     8881 gttaaaacgg ccgatgataa atcaaaagaa cttttaagcg aaaaaaatct taaaaatcta
     8941 gaaatccttt tgcaaaatct agcagaacta agtgcaaatt taaacgctaa ttctaaaaat
     9001 ttaagcctta atctttcaaa cgcaagttta aaaataggaa aaatggctga taatataagc
     9061 cttagtgcgc aaaatttcaa ctccagtctt aaagacataa aagaaagcac aatgatttta
     9121 aaaaatttca taaaaaaagc tgatgaaaaa ttaaacactt atgatgatat taaagcatct
     9181 ttaattcaaa atttagagct ttttaaacga gttttaattg aaagcaatat tctaatagaa
     9241 aatttacaaa acagccctgc tgatttgatt tttaaagaaa ccaaacctaa actaggacca
     9301 ggagaaaaat aatgctaaag caattattct atattttgac ttttattttt atattatgcg
     9361 gatgctcttt aagacacgaa accatcaata aaaatgaaaa tatcatatta aaagacgaag
     9421 gaatagactc aaatattttt tttaaaaaaa ccggtaaaat tcttaaaatt cgcaatgcaa
     9481 atgcaccttt gtatttaaac tcgcgagcta ttgtttatat agataatggt tttagcaaca
     9541 aatacgcaca ttatttctgg ggagatttgc caagcaatct ttattctttt ttaattttat
     9601 caaaatttga acaaagcaat atttttacaa ccttactttc ttcaacaagc tctttaagtg
     9661 cggattatgc tcttgaaagc aggattaact cttttgagca aattcttaat aacaatgaaa
     9721 actacgctca aatttctata agcgtaaatt tcataaatct tgaaaacaat caaataatag
     9781 ctcataaaat tttcaatacc aaagaaaaaa tagaaaaaaa agatatccgc tctacttata
     9841 atgcttttca aaaagccttg aataaaattg gcaatgagat tattttttgg gtaaattcta
     9901 acttatccta atttaggaac actttttgct ttttaaatat ttagcaatat ttttgaaagg
     9961 taaacaatga aaagtgattt agatatattt aaaaaacact taggtgaaat tcagggcgtg
    10021 aatgaattta aagcaaatca aatttgctct caaatcaatg atgcaaatga ttttatagga
    10081 gcacttcaag tgcttgatat gtctttaaaa aaaatagaaa aaagcattct agaaagaata
    10141 gatgaaaatt cagatgatat gcaaaaaaga actcttgatg ccacagcgtc acaacttata
    10201 caaaactgct ctttcatggg aacagctctt tttggaaata ttttcaatgt ttatgttggt
    10261 aaaaaacttt ttgaatttga aattgctaat ccacttttaa ttcttcaaac aagtaattac
    10321 ggaggtgtat tggcctatat acaagataaa agagatgaaa taaaaatcat tctatcagaa
    10381 ttagcaaccg caattaccat gggcgaaact atggataatg ctggaattta taactctaca
    10441 atggatttta aaaatttatt taaataagaa tagtaatcgt ttgttctctt taagcaaata
    10501 taatatattt tagcttaaag agattttcca aactctaaaa gagagttagg ctacgaataa
    10561 aaaggggagg gaaatagcct aacccaaaag agatcttaaa agatctcttt aaaccaaaat
    10621 acatatttag ataatttaac aatttttatt aaattatcta aaccatattt atgttttagt
    10681 ttaatacgat gtgacatttt attctaaaaa cacttaatct gctataaaaa tatcatttag
    10741 taacttaact tattaaagaa tattactaca atattattaa aaaattttaa atttttagga
    10801 ttttaagaaa aaaatattat ttttataatt taatatcata tcatagaaag aatttcagca
    10861 cgcccattaa tcacggcaac acaatgttca taatgagccg cattcagccc atcaatactt
    10921 ccagcatccc attttccatt ataatgcttt ggtgttccat ctttttggca tatcataggc
    10981 tctatgcaaa acaccattcc atttttaatt ttagggccac tttttgcact cgcacctttt
    11041 tctaaatagt ttaaaatttc aggctctcca tggggctttc gtcctatacc atgcccgcaa
    11101 tatccacgaa gcgggacaaa acctcttgca tggataaatt cgcctaaagc agctgaaagt
    11161 tccttaaaac gcattccatc acgaataata tctatagcat gatataacgc gtctttagca
    11221 caagagatta aagctttatc agcgggtgaa acttctccta tagcaatagt tcttgctgca
    11281 tccccataat acccatcaat caaacttccc acatcaagac ctaaaatatc accctctttg
    11341 ataattttat catctggaat tccatggata caaacttgat ttaaagatgt gcaaatggca
    11401 cctggaaaac tataaagtcc cttaaatgat ggcttggcgc caaggcttaa aatataatct
    11461 tctgccattt tatcgatttg ttttaagctc attcctattt taatttcatt ctctaaaaaa
    11521 tttaaagttt ttgctacaat ttgatttgct attcttaatt tttctatttc atctggtttt
    11581 ttcaattcta tcattttatt tccttataaa tttagccaaa tgttagcagt attttttaaa
    11641 gattcaacat cgcttgaagc ataaaaatgt aattttgctt tatgattttt caaatctata
    11701 ttttctcttt ctttaagaaa ttcaactata gcatctcctg aatgaattaa ttttgtttta
    11761 tcaccaaaat acttacttaa agaacgacct agtaaaggga aatgagtgca agcgagtatc
    11821 aaagcatctg gagttgtgat atttttaaaa taatactcca tagcactttg caaaaaatct
    11881 ccttcaaaaa taccttcttc aaccataggc acaaaaagtc ctgtagctaa agcatttata
    11941 tttgtatatc cttgggataa taaacgcttt tggtattctt ctgatttaat ggttgctttt
    12001 gttgcaatga ctaaaatttc tttattttta tcatgcaaag cttttatcgt tgcttcaacc
    12061 cctgcatcaa ttacaccata tactggaaaa tgtgcttttg tccttaaagc atctaaagca
    12121 taagcactag cagtattaca tgcaatgata agcatatcaa tttgaaattg ttcaaaaaat
    12181 tccaatgctt caagacagaa ctttataata gtatctttat cttttactcc ataaggaact
    12241 cttgcggtat ctccataata gataatttca tcaaaaagtc tagcttcata aagagatttt
    12301 aaaacgctaa gcccccctac cccgctatca aatacaccta ttttcacttt aataccttct
    12361 tgctcctata taacgagcct tccaataaga actatttagc tcgacttctt ttactccacc
    12421 tttagtagat aaatgtataa attttccctt gctcatataa ataccaacat gcataccatt
    12481 tggccctcta cctgtcttaa aaaataccaa atctcctgtt tgcaattttg atttagaaac
    12541 ttttcttcca gaacctaatt gagtttttgt agtgcgaggt atgcgtatat taagctgagc
    12601 taatgcgctc tgtgtaaatc ctgaacaatc agcacctttt ttactagttc cacctaaaac
    12661 ataaggggtt tttttccatt catttgcaat aaccttgagc cttgcttctt tatttgtgtt
    12721 gtaactagga cgatagttta gattctgata aaaactacat ccacttataa aaaatataat
    12781 cgtaataata aaaaaaatat gcctcatcaa tccccttaag atcgagtagt aaagaattta
    12841 agataaataa aaccccaaat cccagaacaa aatgaggcta taagaatagc taagttatct
    12901 gcataattaa aaatatcact aacttcatac gccaatccat caataaacaa actcattgta
    12961 aaaccaattc ctgtaagtat gcaaacccca taaagttgtt tcaaatttga accttggggc
    13021 aaagctgcaa atttaaagcg gattgccaaa taagaaaaca aaaatacacc cacttgttta
    13081 cccacaaaaa gccccaagaa aatacctata cttacacctg aaaaaattgc tcctatatcg
    13141 atattggata aatttacccc agcgttagca aaagcaaata aaggcaagat aacaaaagcg
    13201 agccaaaatt ttagactttc atagatttct tctaaaaatg cttctccatt tttagtttgc
    13261 atcggtataa aaaatgctgt tatgattcca gctaaagttg catgcacacc actttttaaa
    13321 acactaatcc aaagaataac tgagcaaata aaataaaaag actttcttgt tattcctaaa
    13381 atatttaaaa caagcattgc caaaatagca attcctgcaa cgacaaaagc agctattgat
    13441 aattttgtcg tataaaaaat agctataatt aaaatagcac ccacatcatc aaaaatagcc
    13501 aaagaaagta agaaaatttt taaacttgat ggaatatgct tgccacacat cattaaaatc
    13561 gctaaggcaa acgctgtatc tgtagctgta ggtatagccc aaccttttaa agtataagca
    13621 tctcctatat ttaccaaagc aaacaacatc gcaggtataa gtataccccc taaagcagcc
    13681 ataaaaggta aaacaatatt tttaggattt ttaaaatccc catgcaaaaa ttccttctta
    13741 agctcaagcc ctatagcaaa gaaaaatata gatataagcc catcatttat ccaaagtaaa
    13801 aaaggcttgt taagctcaaa ttcacctaca ctaaatccga cttttaaatt tagaaattct
    13861 cgataatgtt cgctaaaaga cccgttttgc acaagcaaag caagcaaagt acaaactata
    13921 agtaaaacgc cgccaaaagc ctcatttaaa actaaagttt ttaatttatg tactatatta
    13981 ttcatttaac aatcttaaga taaataaaac caacaatggc acttaaaaaa ctagctacta
    14041 aaatagcaag tttatccgca tattcaaaaa tatcactatt tttataagcc aaaccatcaa
    14101 taaacaagct catcgtaaaa ccgatgcctg ttaaaataca tataccataa aattttccat
    14161 atttaatatt ttcaggtaat tttgcaagtt taagtttgat agcaataaaa caaaaagtga
    14221 aaacacctaa ttgttttcct aaaaatagtc ctaaaataat cccaagactt acaggagaaa
    14281 atactgaacc aagatgcata tctctaatat caattccagc attggcaaaa gcaaataaag
    14341 gtaaaataaa ataaactacc caaggattta aatccttaag aacttcatgt aaataaggtt
    14401 ttttattttt tgtatcaaga ggtataaaca aagaaatgat cacaccagcc aaagttgcat
    14461 gtactccact tttaagcata gctatccaca acacaacacc taccaacacg tacaaagaaa
    14521 gatgggtgat gtgataataa tttaacaaaa gcagagcaaa tatacaaaac aaacaaataa
    14581 taattgctaa agctgaaagc tgatctgtat aaaacaaagc aataataaca atagcaccca
    14641 aatcatcaaa aatagctaaa gagagtaaaa aaagttttaa acttgtagga attttatttc
    14701 ccaaaagcat taaaataccc actgcaaaag ctatatcagt tgctgtaggt attgcccaac
    14761 ctttcatagc aaaatcatga gaataattaa tagcaataaa aattaaagcc ggagtaatca
    14821 taccccctaa agctccgaat ataggtaaag atacagctct tatattttta agttgcccac
    14881 gtaaaatttc atattttaac tcaagcccta tacatagaaa aaatatagct atcaaaccat
    14941 catttatcca taaatccaac gactttgaaa tttgaaaatg atcaaatcct actgtaaaat
    15001 tagcatgaaa aaaatctgta taaatagcac ttaaagaaga atttttacat aataaagcta
    15061 aaaatgtaaa aaatataagc aaaataccag ggaaagtttc acttaaaacc atcttcttta
    15121 tcatttgcat ccttgctcct aagtaaatat ttgtaaaaat ttaatacgat aaataaaatg
    15181 gtaaaattat aacgaaaaaa tactaaagaa ataattattt aaaaaaacaa gcccaagata
    15241 ccaaaaagtt cttaagcttg ttcttaagat atttaagcgt aaatatccaa accactagag
    15301 ctagaagctt gtggagcgga ggcttgagag acaccttcca taccttcgat gagttcattc
    15361 atcaatgcct cgtttgtgtc catagatttt ttcaaaactg aagtattaac agcagtcatt
    15421 aaattaacat tacccataga aacatctgaa accatacatc ctccttttag attgagtctt
    15481 aagactttat ttaaatcgga tgatattttt aaaacttaat attttttact aaacttttta
    15541 aaatttttca agggaactaa tatctgaaat taaaaatcat aaatttttta agataaaatc
    15601 ctattttaaa aatttttaca ctatgaaaca ataagcaaaa tataaataat tgatgctttt
    15661 aaaagcgaat taaatggata aaaatttatt tcaataaatt taagttttat cttattttat
    15721 acaattttta atataatcta aaattataat tttaaatgag aaatcaggag cttgctaatg
    15781 ttacttaaca cgccttgcag ggggataata gatacaaatt ttgaaagcaa aagaattagc
    15841 ataacttcaa ctttaaaatt tcaagaaaaa aaagaaaaag tagaagctaa ggctgagaaa
    15901 gaagaagcaa ataaagacaa tagcaattct acaaacacaa ataccaataa aaaagataaa
    15961 cttttggata tatctgctta gtctaaaata tactatagct atatctcctt aaagaatacg
    16021 caataaatga ttttttgatt tttattaagc ttttaaaaca tcgaaaaaag gaaaaattaa
    16081 aaaacacaaa aacaatatcc caaagtccat agcttagaag aagaccttgc gatacttaaa
    16141 aacaacccat attaaatcac aaaaataaaa tatatttaaa tatttattaa aatacatttt
    16201 ataatttaat aaaaaaatat tatcaacata aaagcttatt ttttagt
//
LOCUS       DARGBD010000031        15990 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.031, whole genome shotgun sequence.
ACCESSION   DARGBD010000031 DARGBD010000000
VERSION     DARGBD010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15990)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15990)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15990
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.031"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..826)
                     /locus_tag="SFZ04_000831"
     CDS             complement(<1..826)
                     /locus_tag="SFZ04_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8065123.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKE"
     gene            complement(823..1428)
                     /locus_tag="SFZ04_000832"
     CDS             complement(823..1428)
                     /locus_tag="SFZ04_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG8065124.1"
                     /translation="MWGKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(1418..2563)
                     /gene="thiH"
                     /locus_tag="SFZ04_000833"
     CDS             complement(1418..2563)
                     /gene="thiH"
                     /locus_tag="SFZ04_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HEG8065125.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFAALLGIDDFRKDALATALHAHFLQQAYSHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(2566..3342)
                     /locus_tag="SFZ04_000834"
     CDS             complement(2566..3342)
                     /locus_tag="SFZ04_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEG8065126.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNAEEALRIARLSKELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAAKAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDI
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            complement(3345..4148)
                     /gene="thiF"
                     /locus_tag="SFZ04_000835"
     CDS             complement(3345..4148)
                     /gene="thiF"
                     /locus_tag="SFZ04_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HEG8065127.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDSVLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKVGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(4145..4336)
                     /gene="thiS"
                     /locus_tag="SFZ04_000836"
     CDS             complement(4145..4336)
                     /gene="thiS"
                     /locus_tag="SFZ04_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEG8065128.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(4346..5443)
                     /gene="dapE"
                     /locus_tag="SFZ04_000837"
     CDS             complement(4346..5443)
                     /gene="dapE"
                     /locus_tag="SFZ04_000837"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEG8065129.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAVKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHAAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(5448..6047)
                     /locus_tag="SFZ04_000838"
     CDS             complement(5448..6047)
                     /locus_tag="SFZ04_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEG8065130.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLGNVIFMRSLAIFGFCFLTYMAYLMLKKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFIG"
     gene            complement(6040..6741)
                     /locus_tag="SFZ04_000839"
     CDS             complement(6040..6741)
                     /locus_tag="SFZ04_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HEG8065131.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKITDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISVGTSGAVLPVGRYASMCEKSILNIYEKDANLEWYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(6784..10623)
                     /locus_tag="SFZ04_000840"
     CDS             complement(6784..10623)
                     /locus_tag="SFZ04_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8065132.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLSKNSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDSENF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYCNAFRQTSDYKRLKESKI
                     YKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQIYATKA
                     RLVDMMDFEKVEFNKAISLNPKTQREEIKSQYPLVKLKICGDFFMGGTPSRKNINYWN
                     GDIKWLTISDYSNRQVIMDTKEKITREGFKNSNAKMIQKGAVVVSIYATIGRVGILGE
                     DMTTNQAIVAIIPNEEFINKYLMYAIDYFKFQLYNEVITTSQQNINLGILQNMVIPKP
                     PLEIQKQIVAECEKIEEQYNTLSLSIKEYQNLIKAMLQKCGIIEDNQEYELNSILDKI
                     NNLCKINLDSEFLSSFNKTIKEYALSNPIFKLSIGKRVLNNELLENGQIPVYSANVLE
                     VFGFVNKEILQDYDNDSVLWGIDGDWMVGFIPKNKKFYPTDHCGVLRVDDTKINAKYI
                     SFILNEAGKKQGFSRKLRASIDRIKALRVKLPSLEFQDQIADITDKIEKKINEYKIEL
                     DRLEKEKEKILQKYLFS"
     gene            complement(10632..12842)
                     /locus_tag="SFZ04_000841"
     CDS             complement(10632..12842)
                     /locus_tag="SFZ04_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEG8065133.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IYELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFIL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTSKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(12832..13182)
                     /locus_tag="SFZ04_000842"
     CDS             complement(12832..13182)
                     /locus_tag="SFZ04_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065134.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(13175..14473)
                     /locus_tag="SFZ04_000843"
     CDS             complement(13175..14473)
                     /locus_tag="SFZ04_000843"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEG8065135.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFDSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYSNEVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNE
                     STKLYPSKDIKNCTMRIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            complement(14537..>15990)
                     /locus_tag="SFZ04_000844"
     CDS             complement(14537..>15990)
                     /locus_tag="SFZ04_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEG8065136.1"
                     /translation="LKPVNLRLFPLIALNLILIIVYVVALRGPFKHVAINVQNYSFSE
                     YSVVNDTMLNPIMAFSWALKQYKEEAALKAITSLKAQELKEKLFDYLHQSPINLKAEK
                     NHPSVFVNLMESFGLNLADFANTEHNFLGSLDKHFKQDFLFKRFLSSSNGTIPSFANL
                     FFVSPFSNISTSKFQKTYLDLTPIAIYKKAGYKVIFVSAGNGSWQNIKNYLSILGVDE
                     IIDENILMKEYNGAKDSENGYGVADEFLYKKVYDLLQKNPHNTLIIALTISNHPPYKI
                     PQNDLPKLENIPQTLLNMLPYEKDKQDNIIKAYTYANNEFGKFLDKVKQSPFKNSVII
                     AATGDHRVREMSMDLNSQKAFAYSVPFYLYIPKDLQDNIYYDKDRVGSHKDIFPTLYA
                     LSLNNVKYLSVGGRNMLARSSDEKLEFGINDAVWIDKKGIYSGGKGYYFESNDTLKDM
                     NKAFNLDVYTKDFDKFYRELNLYQLAERLGISK"
BASE COUNT         5206 a         2969 c         1957 g         5858 t
ORIGIN      
        1 tctctttaaa tctttcaata aaccaagcta ccgaagaaaa agcgcactca ttagctattt
       61 cattgatatt ttttttagaa aatttaagta aaatctttgc tttttgcaac cttttttcat
      121 ctaaccattt tttaggactt tgtccaaaac atttcttaaa ttctttagaa aaagttgcta
      181 aatctaattt cgcaaaatta gacatttcat ttacgcttaa aaattctcta ccacaatact
      241 caaaaagttg ggaaagatca aggcgaaatt cttttaaaat tcctgataaa aaactaataa
      301 aataaatatt cttatttaaa agcaaatgta aaaaaatctc ttcaaatttc aaactcacta
      361 taggatctaa aatttgcgta ttttcttcaa aatgcggtga aaaactttcc aaaattcctt
      421 gcaaaatctt atcatttttt acccaaaaaa tttcatagtt ttgaaacttt tgatctagtt
      481 taaaaaaatc tttatactta taaataagct caattaaaaa tgcattgtca aaaaaaaata
      541 aataagcttc ataaactcct ttactaagtc ctacattgct taaagtatag ctcccagctt
      601 ttaaaaacaa agtttcataa gagttaatct tataatcttt tgatgcagtg tgtaaaattt
      661 tatatccttt gcgaacaaaa gttaaaagat gacttcctac attaacaaaa gtagaatgcg
      721 aagtatccgt ttgtgtatat ttagcaaaag tgcaagattt aattttttta taattgacac
      781 cttttaattg ctttaaatct tctggtaaag aaagaatttt attcatcgta aattttgcct
      841 acattctaaa agatactttt taagatcttt ttctttcatt aaaatttcac gcatgcaaac
      901 acctactaca tttatatctt taaaattttc tatattttga gcattgatac cgcctatagc
      961 ataaagtgga atttgactaa attcaagcaa ggattttaaa aaatcaatcc ctttaggttc
     1021 taaacccatc ttgcaagaac tttcaaaaat atgccctaca aaagcataat ttaccttata
     1081 gctcatcgcc tctaaaagct cttctttgct atggactgaa gtaccaagta tatgaaaata
     1141 ttttgttaat ttaggttctt ttcttagcaa agaaagcggt gcgtgaaaat aacgatgtcc
     1201 caattttaaa cactccctat caaaaaaatg caaaaaacaa gtcacttttt gctttgcgca
     1261 aatgcttaaa acttcttttg ctaagtcata atactcaaat tcgcttaaat ctttttctct
     1321 taaaactata gcatctacct tagccttagc aagtttttca atctgcttta aaaagtctat
     1381 ctctacacat tttctatcgc ttatggcgat gattttttta ccccacatag atactatcgc
     1441 tcatcacagc ttgcaaattt gatcttttaa gcatagctaa aatttcatct acgcttctat
     1501 catctgaaat ttcaaactgc tcatcgccct ttttctcacc cttatgctca cctataccca
     1561 cactcactcc tgcactcatt ttagtagcac caagcttgat aacctcatct ctaaaaccta
     1621 ttctttcacg acttgaaatg gtaatgcccg caaaaggcaa aaagagtcta taagcacaaa
     1681 gtacttgcaa aaggcgtttt tcacttacat ctttaggatg gattttggca ttattgataa
     1741 taggtcttaa acgcggcact gaaatagaaa tttcagcatg cgaataagct tgttgtaaaa
     1801 aatgtgcatg aagcgccgta gcaagagcgt cttttctaaa atcatctata cccaaaagtg
     1861 ccgcaaaagc cactccacgc atacccgctt ttaaagctct ttcttgagca ttaaagcgat
     1921 aaggaaaaat gcgtttttca ccagctaaat gaattttaga atattttaga ggattgtaag
     1981 tttcttgaaa aacagtcaca taatcacaac ccttttcatg caaaatttta tattcatctt
     2041 cattcatagg ataaatttca acgcccacaa ccttaaaata ctctctagct attttacaag
     2101 catttgctat atattctaca cttgcaaact ccctgccctc gcctgttagc attaaaattt
     2161 cttctaaacc acttttagca atggcttgca tttcttcgtg aatttcagct tcatttagct
     2221 tagctcttgc gattttatta cctttttgaa aaccacaata aacacattta gaattacaat
     2281 aatttgacaa ataaagtggg gtaaaaagag agatagaatt tccaaaatat ttttgcttga
     2341 ctttagcgga tttaaaggct aattcttcta tgaaatcttc tgctgcactt gaaagcaagg
     2401 cttttaaatg ctctatgctt aaatgtgttt gatttaaagc atttttaaca tctttagcgc
     2461 taaattgact ctcatcatag ctttgaactt gagttaaaac cttatttaaa atttcgcttt
     2521 ttatttcctg catgtgaggt aaatactgca tataatcttg cataatcaat cccttaaaaa
     2581 gcctgttaat ggagaacttg ctttagcttt actcacactt gccaaacctg ctaaaaaagc
     2641 cgctcttccc gcatttactg ccaaagaaaa agctttagcc atcaaggcta tatctttagc
     2701 ttcagctatg gctgtattta ccatcaccgc acttactccc atttgcatag cttcacaagc
     2761 ttgtgaagga cttccaatac ccgcatctac aatgataggc aaatcaattt cattaagcaa
     2821 aatttgtata aattccttag cacataagcc tttattactc ccaataggtg ctgctaaagg
     2881 catgatagcc gcagctcctg catcacgcat agctttagct gcgtaaagat cagcatgcat
     2941 gtaaggtaga ggtgtaaaac cctctttagc taaaagctcg caagctttaa tcgtttcata
     3001 attatcaggc agcaaatacc tactatcact tatcacttct atcttgataa gttctccaca
     3061 accaagctct tttgaaagcc ttgcaatgcg taaggcttct tcggcgtttc ttgcgcctga
     3121 agtgttgggt aaaagtgtga tatttttagg gatataatca agtatattag cgatttcccc
     3181 tgtatttgca cggcgtaaag ctagagtgat aatctgcgct ttagcttctt ctatggctga
     3241 ttttataagc tctagtgaat attttccaga acctaaaata aatcttgaat caaactcgta
     3301 tttgcctatt tttaatttat cattttttaa attttcttgc atttttactc cttattcgct
     3361 aaaagctcta aaacaagatt actttgatgt cctgcacaaa tatttaccct tggtgccata
     3421 agtccatttc ccaccttagc accatttacc aaatccccac atacatagaa atttttagca
     3481 atttttcttg tttgtatgct gttgctatca ccatagcccg caagccctga agcacagatt
     3541 aaaacactat ctttgtaaaa tctatgaaaa ttttgcgcta tcatcgcttt tgcgatagca
     3601 ctatcaaagg cttcacaaac tatatctata tctttaaaca aagattttaa attatcctca
     3661 tcgattttta aggtacaaat ttcaacgctg atataaggat taatttcgct aatttgctct
     3721 tttaaagctt cggttttaaa cttgcccaaa tcacttacac gataagcctg acgatttaaa
     3781 ttactaggct caatcacatc aaaatcaatc aactttaaat accccactcc acttcttgcc
     3841 aaatttatcg ctatatgtga tccaagtccg cctaaaccac acaccgccac gcgcccattt
     3901 ttaagtttat cgtgaagctt tggtgtatgt cttgctctca tcatagcatc tagtgcgtct
     3961 tttggaggta aagtattttt ttctatacaa aaaagctcat cattttcatt taaagcgata
     4021 ttctcttttg ttgcaaaacc attgataatc catacatcat tttcattttt gctgatattt
     4081 tcaaaaaatt ccaaacttgt tttaaagtct gtatcaagtt ctttgccatt gaattttact
     4141 ctcatcatcc acctcctaca aaacttacga tttcagcttt atcattttct tttaaaatca
     4201 aattttcaaa ttcactctta ggtataatct ctccatttaa ttccaaggcg ataagttcta
     4261 ttttcaagcc tttttctttg ataaaatcca taaatttaag ctcttttaac tcaagctttt
     4321 gtccattgat aatcattcta aacctttaaa aattttctat caagtcttta aaaacaaggc
     4381 aaagtttttc aaattcttct atacttactc tttcatcaat agcgtgaatt ctatcattac
     4441 aaaccccaaa ttccactacc tttacaccgt attttgcaaa ataccttgca tcacttgtgc
     4501 cgcctttggt attaagctct ggcacttcat gggtgatttt ttgaacgctt tcattcattt
     4561 tttgaacgat tttattatcg atatttgtca aaaaagcttc gcttgattgt tttagctcta
     4621 actcatagtt taaaccatga caaatttttt ctacataact ttttacatct tctaagcttg
     4681 tatcagggga attgcgaaca ttaaacataa gttttaaatc atttggcgta acattacaca
     4741 cccccatacc tccgcgaata tcagttataa cgatttttga aggactaaat tcagcacttc
     4801 caggatcaag atcaaaaccc gctaaaagct ttaaaactgg cgcaaaatca tgcacaggat
     4861 tgatacattt ttcggggtaa gccgcatgcc cttgttttcc acggattaaa agttttccat
     4921 tgatagaacc acgacgccct attttaatac tatcgccgat ttttttaacg caggttggct
     4981 cggcaaccac agcataatca ggtagcatat ctctttcttg catccattct aaaacagcct
     5041 tagttccata tatagcttcg ccttcttcat cacttgttaa aataaggcta agtctagctc
     5101 ctttaaaatc cgcattcttt accgcatcta caaaggctgc tactccgctt ttcatatctt
     5161 gagcacccct tgcatagata aagccttctt tttccacagg cgcaaaagca ttattactcc
     5221 aaccctcgcc tgcaggcacc acatctacat gcccaccaaa agctaaatgc tcgccttcat
     5281 ctttaaattt tttagtgagt aaaaggtttt taatgccttc tttttctata aaaaaagctt
     5341 caaaatcact cagttccata gcgatgaaat ttaaagctcc atcatcattt ggcgtaacag
     5401 atttaaattt taaaagttcg attaaaaatt cttttgcatt cattttttta tcctataaaa
     5461 gttttatata ataaattaag agcaaaatac tctataatta tagctgaaat tatattgatt
     5521 ataaaaacaa cttttgcact aaaaacatga ctatatcttg ccaccacaaa ggctaaagca
     5581 cttacccaaa aaagtatagc cacaacaagc cctaaagtca tcaaataagc atgatcacta
     5641 cttaaaacca cacttgcagc gctaagccaa aatcctatca caaaaggatt tgaaccattt
     5701 aaaaaagctc ccttaatata acttttcaaa agactttctt taaattcttt atgctctaaa
     5761 tttaagcttt ctttcttttt ttttagcatc aaatacgcca tataagttaa aaaacaaaaa
     5821 ccaaaaatcg ccaaagaacg cataaaaata acattaccta aaaaatttaa aagcccaaat
     5881 tgaagcaaaa aaagataaag catatctatg ctaaatgctc caagtcctac agctatggaa
     5941 tttttaaaag cttttagcgc ataagttaaa atcaaaatat ttacaggccc aaaaggcaca
     6001 ctcactccaa aacccaaaaa aactccactt aaaaaagaat caaacattac catctttcat
     6061 aaaattttct atatcaagtg cgattttatc aatagcgctt ataatatctt ctatatagat
     6121 tttatcaaaa taccactcta aattcgcatc tttttcgtag atatttaaaa tacttttttc
     6181 gcacattgaa gcataacgcc ctacaggcaa aaccgcccca cttgtgccta cgctgataaa
     6241 aagcgaagtt tgatttagca aagaataaag cgtagcataa gcaggggctt gctcttcaaa
     6301 catgactata ttgtgtctta aatccttgct tttgcatttt gggcattgtt tatctgtgat
     6361 tttttcataa cctatattaa aaattccttc gcattttaag cagcgaagtt caggcaaaaa
     6421 gccatgcaaa tgtactacat ctttacaccc tgcacgctct agcaaatcat ctacattttg
     6481 cgtgatgaca aaaaggtttt taccccattt ttcttttaac tgtgcgattt tttcatgagc
     6541 atgatttggc tttacatttt gaagttgtgc ccttcttgca tcgtaaaaat caagtacttt
     6601 tttaggattt tttctaaaac ctgttgcaga gcaaacctcc atcacatcgt attcttccca
     6661 aagtccatca ttatctctaa aagttttaag cccacttgga gcagacaaac ccgctccgct
     6721 taatatcata atgtttttca tcgctaaacc ttataaaatt tacaaagttt agcgaaaaat
     6781 gctttaagaa aataaatatt tttgcaagat tttttctttt tctttttcta atctatcaag
     6841 ttctatttta tattcattga tttttttctc aatcttgtca gttatatctg ctatttgatc
     6901 ttgaaattct aaagaaggaa gtttaactct taatgctttt attctatcta ttgaagctct
     6961 aagttttctt gaaaatcctt gttttttacc agcttcattt aaaataaaac ttatgtattt
     7021 agcatttatt tttgtatcat caacccttaa taccccacaa tgatcagttg gataaaactt
     7081 tttatttttt ggtataaatc ccaccatcca atctccatct ataccccaca aaacagaatc
     7141 attatcataa tcttgcaaaa tttctttatt aacaaatcca aatacttcca acacatttgc
     7201 actataaaca ggaatttgtc cattttcaag cagctcatta tttaaaactc tttttccaat
     7261 acttagttta aaaattggat ttgataaagc atattcttta attgttttat taaatgatga
     7321 taaaaattca ctatccaaat ttattttaca caaattatta attttatcta aaatagaatt
     7381 tagttcatat tcttgattgt cctctataat accacatttt tgaagcattg ctttgattag
     7441 gttttgatac tcttttatac tcaaacttaa agtattatac tgctcttcta tcttttcaca
     7501 ctctgctacg atttgttttt gaatttcaag cggtggtttt ggaataacca tattttgcaa
     7561 gattcctaaa tttatatttt gttgcgaagt tgtaataact tcgttatata attgaaattt
     7621 aaaataatca atagcataca taagatattt atttataaat tcttcatttg gaataatagc
     7681 tactatagct tgatttgttg tcatatcttc gcctaatatt ccaactctac caatagttgc
     7741 ataaattgaa acaacaacag cacctttttg tatcattttt gcattagaat tcttaaaacc
     7801 ctctcttgta attttttctt tagtatccat aataacttga cgattagagt aatcgctaat
     7861 tgttagccac ttaatatccc cattccaata atttatattt tttcttgatg gtgttcctcc
     7921 catgaaaaaa tctccacaaa ttttcaattt aaccaatggg tattgagact ttatttcttc
     7981 tctttgagtt tttggattta aacttatagc tttattaaat tccacttttt caaaatccat
     8041 catatcaaca agccttgctt ttgtagcata aatctgcaat tcttgcggga taacatcaag
     8101 cgtatttaaa aaagatttgt agattaaagt attaagctta gtctcatttt gtggattacc
     8161 tctttcaaaa agtgggctca aataaggctc gtgcaattct tttaaacctt catcaccttt
     8221 tctattactc cactcataac ctaaaaattt cttttgttct tttatatcac ttggggattt
     8281 tatgattaaa acttcttgat taagacttag actaaaataa agcaatttat ccttttctat
     8341 tgcctgagca taagctaaaa aggctttatc ttctaaatct tgcttatctt tactttcttt
     8401 ataaatttta gattctttaa gtcttttata atcgcttgtt tgcctaaatg cattgcaata
     8461 atctttaaag gcttctagct ctgcaagttt agaatctaag tttccattta aaaaattgct
     8521 ataaagctct ttatcaaatt ttctaaaatc acaatacgca cttagataat tttgataaaa
     8581 gttttcactg tcttttaaat tttcagcttc tatgcgttct ttaatcaaac tataatcttg
     8641 agaaataaga tgattttctt gtttaaaagt ttcttttttg cgtaaaaata aaataatcgt
     8701 atttgtccct gttgctccaa atgtttgatt acctagctct acaatggcaa taaaatcaaa
     8761 attttgaaat aatatttctc ttgtattttt ataaatagaa tctttattta aaatagaact
     8821 tggtaagata atggcagctt tagcattatc atttaaaatt tgatttgctc gctcacaaaa
     8881 aaagcattca atagaattat ttgtttctat gtttatatca tcgttaaaaa gtttataggt
     8941 atttttagat ttatcactta aagtttctaa aaatcctttt acagaataag gcggatttgc
     9001 tataagcaaa tcaaaactat ttgattctat ttgtggtttt gctttttctc cttctaaatt
     9061 atttgtattt gctaattcaa aagaagcaag tgcatcagcg tataaaatat tgatttcatt
     9121 ttgcccatac attgcacttg ataccttaga aaccttactt aagcgatact ctttttcaat
     9181 accataaata tttttataat gctctttaag ctcatcttct gttagataac gcttaagctc
     9241 attggcatag gtgtttaaaa aatgtccagc accacaagca taatcaatca cccttaaagc
     9301 tttagagttt ttgcttaaca tttcttgaag cggtaaagaa tacataataa attcacaaat
     9361 ttgaataggg gtaaaaaact gcccttcatc ttgcttcata cctttttgca aaaaaagttc
     9421 aaaaagattg cctaaaaatt gatttgtaga gttttgggta agcttgtaat ttgcaaaaag
     9481 ctctactatt tcttttaata caagtgcatt ttttaaaaat aattctttat tatgcacttc
     9541 taaaaatgca aaatcattat ttgaataaaa ttttaattct ttgatgtaat tttgcattac
     9601 ttcttttaaa gtttttatct ttaattgctt aaagtctttt tctatatctt cattagatac
     9661 aaaggtaatt ttctctccta agaattcttt catagcttct ttataaagcc acattaatct
     9721 atcttgcata tttgcataag tatctgccat tacaccaaaa tatccaaatt tgagattgtt
     9781 tttattaaaa gtttcatcat aaattttgca aagaaaaata tttacaagtt tatcaaaggc
     9841 attttcctta cctgatatat tatgcttgcg taaaattttt gcaaattcgt gatatttacc
     9901 ttcttcttta agttctttaa gattatcaaa agttggagta atttctaaaa ttttataggc
     9961 attgacattt gcttcaaaaa taccttgttt aaaatattgc agttcataac tttctttcca
    10021 agttttaaaa agttctatat tgttattaga ttttttataa gaattttgca attccttttc
    10081 ttttagatat tcttcgttat cgtaagcttg tatgatgtaa tttttatatt ctaacttatc
    10141 gctaaaatca cttgtataaa gacaaagata ttttacacct ttttcttgct gaaaataaga
    10201 aaaaagctgt ccgccatctt cttgcattct attccattct tttataaatt cactattttt
    10261 agaatctgtg gttttacatt ctataatcaa ataaggattg ttttcattat cctttactaa
    10321 aatatcagcc ttaccacctt ttttatccct gccaagattc cattttggct ctaactctaa
    10381 atgttcagcc ttataacctt tttctaaaag tctatgcaca cattcaaaaa ctacaaaatt
    10441 ttcagggtgt gaaaaattag aagtagtttt atcgtgaatt tttatttctt ttgggtaatt
    10501 aatactttgg tttttataat ctattaaaag tgtgtaatta ttgattgttt ttacataatt
    10561 ttcattttta tttttaaagc ctaagttttc tagaacttgt tttaaattat cttttgtaat
    10621 catttatttc cttataatct caccacctta gcaccaaagc caccttgatt gatcggtgcg
    10681 tcattaaagc ccttgacact tttatgagtt ttcaaaaact ctcttacagc aaaggcaagc
    10741 tttcctgttc ctataccatg gtaaactaaa acttcatcaa agcctgcaag caaagcatct
    10801 gaaataaatt tatcaagcct tgaaatagct tcatcactcc taagcccgtg caaatccaag
    10861 ctaacactaa gattagtcgg ttttgccaca ctaatgcttg tttttggact tattttagat
    10921 gtaggagtgc tttttttaag cagttttaaa ggcacacgaa gtttgatccc atcactttca
    10981 accatagcat cgtttttaga aatgcttatg attttaccct taattttttc atattttaca
    11041 aaatccccca cacgcaattc ttcgttttgc tccatacttg gcaagatgat ttctttttta
    11101 agttcattgg ctttattaag acttctttgc ttgtctttta tatctttaag ctgtatggtt
    11161 tttttagctt cttctatggc tttgtgaaat ttaaattcta aatttctcaa actcgtacga
    11221 aattcttgtt catttttttc tttttgctct tttaaggaaa gtaaaatttc atcgactttt
    11281 tgctcttttt tctcgacatt ttcaagctta gcttttagtt ctaattcaag attgatattt
    11341 ttacccacaa gctcttctaa attttcttta tcctcgccat aaagcttttt agcctcgcta
    11401 actaaattcg gcggaatctg ataacgcaaa gcggtttcaa aggcataaga ttttcctatg
    11461 gtgcctttta aaaactcgta ttttgggcgt gaaagctctt catcatataa ggcagcgatg
    11521 agttcaactt gctcattctt tgctaaaagc atggcaaggc gtttgtggtg tgtagtaatg
    11581 atgattttaa gattattagc tatgagtttt gaaattaaca cactatacaa acaagccgct
    11641 tcttcaaaat ctgttccaag ctctatttca tcgataccta aaagcaaatt tttcctagaa
    11701 aaaagtctag aaaaatgcaa cattcttcct gcaaaggttg aaatgtcgtt tttaacattt
    11761 tgcggatctt ctatgatggc atcaaattct ttaaaagtac cgattttact ttcacttgct
    11821 tttatatgca taggcaaaag atgtttagct aaaaatgctg cgcttagcat ggattttaaa
    11881 agcatggatt ttccgcctgc atttacccct gtgatgatta aaacttgttt tttaaattcc
    11941 aaactcacgc tttttggatt ttttaaggca ggatgggcga aatttttaag cactaaatcc
    12001 gtactttgat cgcacaaaat aaattcaaaa tccctttttt tagcaagcaa aactctagca
    12061 ctataatggt caaaaagatc aaaggctgta ttgataaatt ttaaaaaagg tagatttttt
    12121 gctaaaaaag ctgagaaatt tttagcgtat tcataataaa tttcttcttt ttgatttttg
    12181 attttttcta tatcattttg caaattttca acacttaaag gcacgatata aaagccaccg
    12241 ccactacttc tacctatgat ttttgcttta atagcgtgat taaacccacc tcttacaagc
    12301 aaggcttcaa gattgtttat aagatggatt tgtgtatcga taagataagg cattaaagct
    12361 tttgtatagc aaaatttctt aaactcagct attatgcttt cgtttttcaa tcttaaagcg
    12421 gcattaagat ttacaagtct ttcatctaaa ctttctttta attctccttt ctcatcgaaa
    12481 ttcaaacaaa gctccaaagc cccgctaaca aattctatct tttgtagcca agagtctaaa
    12541 tttgttccta gttttatttt ttttaacttt tcaaaataac gaaaaatttt tacaaattca
    12601 aaaatttcat ctaaatgcaa aattccttgc ttacttaaat gtactaaggc tttatcaaga
    12661 ttgctaagct ctggcatagt aggaaattcc acctcgcaaa gctcatatat acgtttaaaa
    12721 tgaagattag aatctccttg caaaaaaatc tccttatctc ttgcaaaaag agctttaaac
    12781 tcttctaaat agctgtttaa atcaagcttt gagatcaatt cttcttttgt atcattcatc
    12841 atttaaccta caatctttaa tatctatgat taaagaatta aaactttgat tattatcctt
    12901 tgaaataaaa cttcctgtac caaattcata attaaaatac gccttagaaa cattgatatc
    12961 tttacataaa atatttttat tttgattaaa agctacgata atatctgttc ttaaatgact
    13021 tttttgtgtg ttttcaaatt caaaaaatac tgctaaaaca ataaaaatca caagcaaaat
    13081 accaaaaaaa ggtttagttt ttttgcctaa tttttcacgc aaagcaaaag tgattaaggc
    13141 taaaattaaa ataattaaaa aatataaaaa aaacctactc atttttttgc cttaatttat
    13201 tactgatatc tcctgcacca aaacctataa taagcccttc ttcaaaaact tgccccttag
    13261 aagccaccaa aaatttaccc tctcttttga tatcttctac aaataaagcc ttaggaaaaa
    13321 ccgcttttaa atcaagccct ataggctctt ctcctgcagc ataaacaggt aaaattataa
    13381 gctcgtctac accttcaaaa gcctttgcaa attcctttaa atttgcagcc aaacgcgtgt
    13441 agcggtgggg ttcaaagata gctgtgattt tcttatatcc gcctaatttt gcgtattctt
    13501 gtgctgcact taaagtcgct tttatttcgg tgggatgatg accataatca tcgattaaaa
    13561 ccaaattttc atcagcatgt aaaatatcaa aacgcttttt aataccttga taatttttaa
    13621 gcctagttct tatcgtttct atatctaaga aatttaaagc cgccaaaatc gccaaagacg
    13681 catcaagggc taaatgatat cccatgccaa aaaccttaaa ttcacctaaa tctttcaact
    13741 caaagcttgt aaaaggtttg aaattttcta tacgcatggt gcagtttttg atatctttgc
    13801 tcggataaag cttggttgac tcatttttat aatttttcaa aaactcatct tcagcattaa
    13861 tcacgcgaat tttagccgta tctaaaaact ccgcataagc atgatggagt tttgaaactt
    13921 cattgctata atgatctaaa tgctctgctt ctgcattagt aactatagcc aaataaggat
    13981 ttgaatttaa aaaagaacta tcgctctcat cagcttcaaa aacaaggttt tggctttctt
    14041 tataaatcat atttgaatca aattctttta aaatcgctcc gatgatcaca gaagcatcat
    14101 caagcaaaga agccaaaata cttgaagttg tgctttttcc atgtgctcct gcaactgcaa
    14161 aaacgcgctt atcttctaag ataagaggta aggcctcctt gcgtgaaagg catttaatgc
    14221 ctaattcttt agcgtgttta aattcaggat tttcttcttt gatagcagca gaataaataa
    14281 ctaaatcttt gtttaaaata ttgtctttat gatgagggat actgacctta accccttctt
    14341 tttctagttc tttagtgatt ttactctctt taagatcact tccgctaatt ttaaaacctt
    14401 tttcttttaa aaatcttgct aaagcggaaa ttcctatacc gcctatgccg ataaaatgga
    14461 tattttgcat catttaaacc tttatacttt aaaggctaaa ttttagcact tttttactaa
    14521 aaagaaaata taaatcctat tttgaaatgc ctaaacgctc ggctaattga tataaattta
    14581 actctctata aaatttatca aagtctttag tataaacatc aagattaaaa gctttattca
    14641 tatcttttaa agtatcatta ctttcaaaat agtacccttt accgccacta taaatacctt
    14701 ttttatcaat ccatacagca tcgttgatcc caaattctaa tttctcatca cttgatcttg
    14761 ctaacatatt tcttccgcct acgcttaaat acttgacatt atttaaactt aaagcataaa
    14821 gagttggaaa aatatcttta tgagatccta cacgatcttt atcataataa atattatctt
    14881 gcaaatcctt aggaatataa agataaaaag gtacactata agcaaaagct ttttgggaat
    14941 ttaaatccat actcatttcg cgtactctat gatctccagt tgctgctata ataacactat
    15001 tcttaaatgg actttgtttt actttatcta gaaattttcc aaattcatta tttgcataag
    15061 tataagcttt gataatatta tcttgtttat ctttttcata aggaagcata ttaagcaaag
    15121 tttgtggaat gttttctaat tttggcaaat cattttgtgg aattttataa ggtggatgat
    15181 tggatatggt aagagcaatt ataagggtgt tgtgtggatt tttttgaagc aagtcataaa
    15241 cttttttata taaaaactca tcagctactc cataaccatt ttcactatct tttgctccat
    15301 tatactcttt cattaaaata ttttcatcta taatctcatc tactcccaaa atactgagat
    15361 aatttttaat attttgccaa gatccattac ctgcacttac aaaaatcacc ttatatcctg
    15421 ctttcttata aatagcaata ggtgttaaat ccaaataagt tttctgaaat ttgcttgtag
    15481 aaatattaga aaatggactt acaaaaaata agtttgcaaa acttggtata gttccattac
    15541 tagaactcaa aaaacgtttg aataaaaaat cttgcttaaa atgtttatct aacgaaccca
    15601 aaaaattatg ttctgtattt gcaaaatcag ccaaattaag cccaaaactt tccattaagt
    15661 taacaaatac actaggatga ttcttttcag cttttagatt tataggactt tgatgcaaat
    15721 aatcaaaaag tttttcttta agttcttgtg cttttaaaga tgtgatagcc ttcaaagctg
    15781 cttcttcttt atattgtttt aaagcccaag aaaatgccat aattggattt aacattgtat
    15841 catttacaac actatattcg ctaaaagaat aattttgcac atttatagcc acatgcttaa
    15901 atggacccct taaggctaca acataaacaa taattaatat taaatttaaa gctatcaagg
    15961 gaaataatct taaattaaca ggttttagct
//
LOCUS       DARGBD010000032        15938 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.032, whole genome shotgun sequence.
ACCESSION   DARGBD010000032 DARGBD010000000
VERSION     DARGBD010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15938
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.032"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            135..524
                     /locus_tag="SFZ04_000845"
     CDS             135..524
                     /locus_tag="SFZ04_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HEG8065137.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFIFIVLLGVGFLYAYKKGAFAWQSIK"
     gene            506..1009
                     /locus_tag="SFZ04_000846"
     CDS             506..1009
                     /locus_tag="SFZ04_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEG8065138.1"
                     /translation="MAEHQINYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            1006..1800
                     /locus_tag="SFZ04_000847"
     CDS             1006..1800
                     /locus_tag="SFZ04_000847"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEG8065139.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIASKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            1802..3028
                     /gene="nuoD"
                     /locus_tag="SFZ04_000848"
     CDS             1802..3028
                     /gene="nuoD"
                     /locus_tag="SFZ04_000848"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEG8065140.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTPPEILAMHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            3025..3252
                     /locus_tag="SFZ04_000849"
     CDS             3025..3252
                     /locus_tag="SFZ04_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HEG8065141.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            3249..3941
                     /locus_tag="SFZ04_000850"
     CDS             3249..3941
                     /locus_tag="SFZ04_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065142.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKETKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSLKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            3938..6400
                     /locus_tag="SFZ04_000851"
     CDS             3938..6400
                     /locus_tag="SFZ04_000851"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HEG8065143.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKYWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPTNGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFISHIHKSGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKNNIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            6393..7391
                     /gene="nuoH"
                     /locus_tag="SFZ04_000852"
     CDS             6393..7391
                     /gene="nuoH"
                     /locus_tag="SFZ04_000852"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEG8065144.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFISLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALAVLL"
     gene            7401..8042
                     /gene="nuoI"
                     /locus_tag="SFZ04_000853"
     CDS             7401..8042
                     /gene="nuoI"
                     /locus_tag="SFZ04_000853"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEG8065145.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFLGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDADLLVVKTPNYYDVMIERALENQNTQEQGENK"
     gene            8039..8557
                     /locus_tag="SFZ04_000854"
     CDS             8039..8557
                     /locus_tag="SFZ04_000854"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEG8065146.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLTMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     TLTHKELTKEKQ"
     gene            8554..8850
                     /gene="nuoK"
                     /locus_tag="SFZ04_000855"
     CDS             8554..8850
                     /gene="nuoK"
                     /locus_tag="SFZ04_000855"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEG8065147.1"
                     /translation="MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGIALCVLWYRRKGTLELKSLKEVEA"
     gene            8852..10642
                     /gene="nuoL"
                     /locus_tag="SFZ04_000856"
     CDS             8852..10642
                     /gene="nuoL"
                     /locus_tag="SFZ04_000856"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEG8065148.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIFCSLLVALSTF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSIVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGAILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPRFYHQFIVSKYESLCTILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            10644..12131
                     /locus_tag="SFZ04_000857"
     CDS             10644..12131
                     /locus_tag="SFZ04_000857"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEG8065149.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLMLLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLRFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            12121..13509
                     /locus_tag="SFZ04_000858"
     CDS             12121..13509
                     /locus_tag="SFZ04_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEG8065150.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYVLFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLIACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTVILNGYWYLALFVALSSVIMLYAYLKILIHVLFMKNDRVYNIKFSFIQNFILAFC
                     VCVSIFAILLML"
     gene            13531..15897
                     /locus_tag="SFZ04_000859"
     CDS             13531..15897
                     /locus_tag="SFZ04_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HEG8065151.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
BASE COUNT         5063 a         1895 c         3010 g         5970 t
ORIGIN      
        1 tcataaaaaa ttaaaacttt aaaaaatatt ttttaatata agtttcaata tagaaagttt
       61 agagtaaaat aaagaaaagt gtaaatttaa tttttgttgt ggagtgatta aagtgcttta
      121 aaaaaggaga ataaatgtct catatagatg cttcgcatcc ttattttggt atttttttaa
      181 tgctagtact tgctagtgtt atttttttcg gactggtttt tttagcttca aaaatcggta
      241 ataattttgc cgcaaaaaat cgcaaaaaat taggacttgg aatttatgaa tgtggtccta
      301 ttcctgttaa acaagctaac aagattaact ctcaattttt catcatcgcc ttaatcttca
      361 tacttttgga tatagaagtt gtgtttttat ttccttgggc tttgattttt aaagatttag
      421 gttggtttgg gcttttagaa gtttttattt ttatcgtact tttaggagtt ggatttttat
      481 atgcttataa aaaaggagcg tttgcatggc agagcatcaa ataaattatg caagtggttt
      541 acccgtagtt ttaactagtg ttgataaact agttcaatgg ggtaggagta attctttatg
      601 ggctttatct tatggacttg cctgttgtgc gattgagatg atggcggctg ggggttcaag
      661 atatgatttt gatagatttg gaacgatttt tagagcttcg ccacgccata gtgaagtaat
      721 gattattgca ggaactttat gtaaaaagca tgctgaattt acaagaagac tttatgatca
      781 aatgcctgat cctaaatggg tgatttctat gggaagttgt gccaatacag gcggtatgtt
      841 taatacttat tctactgttc aaggagtgga tagaattata cctgtagata tttatgtgcc
      901 aggctgtgct ccacgtccag aaagttttca gtttgctttg atgattttgc aaaaaaagat
      961 ccgcaaagaa aaagcaagtc gtaaaatcgc acctaaaagg ttggtataat gagaaagtat
     1021 agcgataaaa aaaatgctca aactcaaaat tactacaaag atagatttta tcacgcgcca
     1081 cacactgtaa aatctgatgt taatgaaagt gtttttaaag aggattttga agttttaaaa
     1141 actcaagtag aaattttaaa ttcctttgta gaacttgatt tttgggtaat agaaattaaa
     1201 aaagaagaca atgttaaaac tttgcaaatg cttaaaactt tagggtattt aagttttaca
     1261 gaagcaagcg ctattgattt tatagcaagt aaaaatggtt ttgaagtgtt ttatcagctt
     1321 ttaaatttag aaaaaaaatt aagagtgaga ataaaaactt ttgtaggcgt aaaagagcgt
     1381 ttgcaaagcg tggctcatgt ttttaaaggg gcaaattgga gtgagagaga aatttatgat
     1441 atgtttggaa ttttcatcat aaatcatccc aatttaaaac gcattttaat gcctgatgat
     1501 tggtttggac atccgctttt gaaaacttat cctttaaagg gcgatgagtt tgcaagatgg
     1561 tatgagattg ataaaatttt tggcaaagaa tatcgtgaag tagtgggcga agaacaaaga
     1621 gattctggtt ttgctgatga taaagatacg ctaaattttg caagacttta ccatgaagtg
     1681 ccaaaaggtg gtcaaaagaa ggaaatttcc tttaaacaag aatatcaaga agatgaaggt
     1741 gtggcttttg taaaaaaagt aaaacgtgat gaagcaaaaa ttttagagaa aaggcgttaa
     1801 aatgcaaatt cctagcaagt taaaacctta ttatgaaaat atagcttttg agcaagaaga
     1861 ctcaaaaatg attatcaact taggccctca acatccttca gcgcatggaa atttgcgtct
     1921 tattttagaa ctcgatggag agcaagttgt aaaagcgcgt ccttgtatag gttatatgca
     1981 tcgtggtatg gaaaaaatgg ctgaaaatat gatttatcaa gaatttattc ctactactga
     2041 tagaatggac tatatcgctg cttcagcgaa taattatgct tattgtgcag cggttgaaaa
     2101 gctttgtggt ttagagattc cacgccgtgc cgcagtgata cgcatgatac ttttagaatt
     2161 aaaccgtatc acatcgcatt tgctttggct tgctactcat gcgcttgata ttggtgcgat
     2221 gagtgtattt ttatactgtt ttagagaacg agagtatgtt ttggatttga tagaaaagta
     2281 ttgtggtgca aggcttacgc attcttctat gagaataggc ggggttatgc ttgatttacc
     2341 tgagaattat ttagaagaaa tgcttgcatt ttgcgataaa tttccaaatg atttaaaaga
     2401 ttatgaagat cttttagatg ataatagaat ttggcgttta agaactgaaa atgtaggtgt
     2461 ggttactaaa gaacaagcct taaattgggg ttgtacgggt gtgatgttaa gaggaagtgg
     2521 cataaaatac gatatacgca aagaagagcc ttatttgctt tataatgaag ttgaatttgg
     2581 tgtgccttat gctacgcaag gggattctta tgcaagatat aaagtttata tgcaagaatt
     2641 tcgtgaaagt ttgaaaatcc ttagacaatg tgccatgctt tataaagata ctccgcctga
     2701 aattttagct atgcatcctg agtatgtaag tgcttcaaag gaacaaattt taacgcagaa
     2761 ttattcttta atgcagcatt ttgttttaat cactcaaggt ttaaaacccc ctaaaggcga
     2821 agtttatgtg cctactgaaa gtccaaaagg tgagcttggc ttttttatcc atagtgatgg
     2881 tacaggaaga ccttatcgtt taaaggctag aacgcctagt tattggcatt gtgcgttttt
     2941 tgaagaaatg cttgtaggta cttatttagc tgatgttgta gccattatgg gtaatgtaaa
     3001 tatagtttta ggtgagatag atcgatgaga agggtagatt taagaaaaag caaagagctt
     3061 tttgaagatt tagcacaaat cataaaagaa gcaaaacaag gtgaggtttt agtggtgctt
     3121 tttgaaatcg gcgatttttc tcctgttgaa aaaagttttt cttttgtaaa agaacaaggc
     3181 tgtgagcttt taaattcttt gaaatttaat caagtggatt ggactattgt tataaaaaag
     3241 gagagagtat gatttatgat aatgctcttt gttttttaga tatgccaagc cttaaaaaca
     3301 aaaatttatg tgaaaaaata ggtgtaaata gtattaatat ttcttgtttg gaagataaaa
     3361 acttaaaagc taaattttac aaatgcgaaa ttgcaagttt gagttttgtt ttggccttgc
     3421 tttgtaaatt aagcgatgaa ggacaatttt gcgatttaga tgagggatat ttaagtgctg
     3481 aatcttgttt tggagaggaa gaagcaggcg aagtgcttgc ttttttaaaa gagactaagt
     3541 atttaattat agataaaaat atccattctt ataaagatag tgaaaatatc aaatattttt
     3601 tgaatttcct aagtgtaaaa tatggattaa agattttaga tagcgatgaa gaagaatgcg
     3661 attttaaaaa ggcaaaatta aacaccctaa aagaactcga taattatgac gggttagtgc
     3721 tttttagagc aaatttgcaa gataaaaatt tacattgttc aaagcaattt ttacaaattg
     3781 caaaatgcaa agatcaaagt gaagttgaaa ttttggctaa agattttagt cttaaaacca
     3841 agctttgttt agatgaaaat ttacaaggca ctatagcttt tttaaattat gaaaacaatg
     3901 gttttgattt tactccaatt cgcataaagg aagcaaaatg acagttaaga ttaatggtat
     3961 agattgcgcc tttgaagaag gcgaatatat tttaaatata gcaagaagaa atgatatttt
     4021 tatcccagcg atttgctatc tttcgggctg tagtcctact ttggcttgtc gtatgtgtat
     4081 ggttgaagct gatggtaaaa aggtatattc ttgcaatact aaagcaaaag agggcatggt
     4141 tgtagaaagt gatttacaaa atctttggga tgaaagaaat gagatcatgc aagcttattg
     4201 tatcaatcat cctttagaat gtggagtttg tgataaatca ggcgagtgtg aattgcaaaa
     4261 tttcactcat aaaagtcgtg taaatgttca aaaatattgg attaaagaca cgcataaacc
     4321 gcataaacat tggggaatga ttaattacga tcccgcactt tgcatagtat gtgagcgttg
     4381 tattacagtt tgtaaggata aaatcggaga aagtgcttta aagactgttc ctcgtggcgg
     4441 agatagtgtg gataatagct ttaaagagag catgggaaaa gatgcttatg cgatttggac
     4501 taaatttcaa aaaagtttga taggccctac aaatggcgac acgcttgatt gttcattttg
     4561 tggagaatgt acaagcgtat gcccaacagg agctttaata ggttcgaaat ttcaatacac
     4621 ttcaaatatt tgggaactta aaagaatccc tgcttcaaat ccacattcaa gcgattgtga
     4681 gttgatgtat tatgatatta agcaaagcgg cattagcaat caaaaagaaa aaatttatcg
     4741 tgtgagtaat gattttgcct ttgcgagttt aaataaggct gcaagatttg cttttgatac
     4801 gcaaaatgag gcggataaag atgaaaaagc ctttaaagaa cttgtggagc tttttgagaa
     4861 aaatgaaatt aaaaacatta aatttaatag ttttattacc aatgaagaag ctttgatttt
     4921 acaaaattta aaaaagaaat ttaatctttc tttaatcaat gaagaagctt tgaaatttaa
     4981 agaattttta caagaattta tcgctaattc tggtgagttt tatagcgcta atactcaaga
     5041 tataacaaaa agtgattttt tggttgtggc tggaatgctt ttaagatatg atgctccaac
     5101 gcttagttat aaaatcaata atgctttagt gatgaataaa ggctcagggc tttattttca
     5161 tcctatggaa gatatgggta tagcaaaata ttctaaaaat tttatctcgc acattcataa
     5221 aagtggcgat gaagagcaaa ttttatattt tttacttcaa aaatttagcc aagatgaagg
     5281 tatcaaaact catttagcag agttttttgt tagtgaaaat aaagaaatag aagaaagtat
     5341 caacgaagaa gttgtagaac aagtcataga aaaagatgaa gaaggcaatg aaattcaaaa
     5401 agaagtaaaa aaagtcgtac ctaagaaagt gaaaaacaac atagaagtac aacgctctgt
     5461 ttttgctaaa aatttaggca tagatgaaga taaattagaa gatttattgc ttaaaaaagc
     5521 aaattttact cttgttatag ggagtgattt ttattttcat aaaaatgcga aaaaacttgc
     5581 taaattactt gctttgatcc aaaataccac tccttttaaa gtctttttaa atcctacgca
     5641 tactaatacc ttaggtgtgg ctatgatttg cgatttggat aacaatacac aagaaggcaa
     5701 gactttaggc tacaatgaaa aaggtgattt tagtttttct tatgaagagc atgcaaattt
     5761 agctagtgcg agtttaaatc agcaagaagg aactttttta aattatgata aaagagtggt
     5821 accaactaac gctgctttag aatttaaggg atatttttta aatgatttgg ctaatgcttt
     5881 aggttttgat gaggaatata ctataaatta tactaagaga ctccctataa ataaaggttt
     5941 ttctccgatt gattttgatc atttagacaa tttttatacc aatgcaggcg attgtaaaag
     6001 gggatatgag cttaatttag aatgtttcaa acaagttgct aaaaaagaat tcatctctcc
     6061 aaattttgaa aatttaagcc taaaagaaga tgaaattttg ctttatagtg ctaatcctag
     6121 ctatcaattt ggtagatttt caaatcgtgc tagtgcgatt aatgaggtga tttttttagg
     6181 tgtaagtgaa aatttagcta aagagaaaaa tttaaaagat aaagatcttg taaaacttaa
     6241 aataaaagat aaagaattaa gccttagtgt gcgtgtggat aaggatataa aaaatggagc
     6301 tttcttgccg tattttgatg aaaaacttga cacgctaagc ttttttgatg aaagatttgt
     6361 tgtggcgaat ttagaaaaat taggagcaaa ccatgagtga ttttgctttt tttgctttag
     6421 agactttgat taaatgtatt attatcattg caatatttgc gagtttagca ggtcttgcaa
     6481 cttatgctga aagaaaggtt ttagcttatt ttcaaagacg catagggcct gatatggtag
     6541 ggccttttgg gcttattcaa cttgtagctg atatgataaa gctttttact aaagaagata
     6601 taatcccttc aaattcgcaa aaatttattt ttgctatagc acctttgatt tctgctattt
     6661 gtgcttttat ttctttagca gctattccta tgctacctga atttacttta tttggaaggg
     6721 ttattcagcc tatagtggca gatatcaatg tagctttgct ttttgtcatc ggtacttcag
     6781 gactttgctt ttatgcggtg tttttgggtg gacttgcaag taataataaa tggtcgattt
     6841 taggggctgc aagagggctt gtagcgatta tttcctatga aagcgtagga gctttagctt
     6901 tgattgctat tataatgctt gtaggttctt tttctttggt ggatattaac aattatcaaa
     6961 gcgatggatt tttttcttgg cttattttta aacaaccttt ggcttttgtg ctttttataa
     7021 ttgctttatt tatagagact aatagaactc cgctttgttt gacggaaaat gatgctgaaa
     7081 ttgtagcggg ttatggaacg gagtattcgg gtttaagatg gggtatgttt ttcataggtg
     7141 aatatacttc tatgatagct ggagctattt tggtcactct tttgttttta gggggtttta
     7201 atagcttttg gattattcct ggttggatta tgatgatagt aaaatcaagt tttattttct
     7261 tttggtattt ttgggcaaga gctgcttttc cgcaattgcg tccagatcaa gtgatgaaaa
     7321 tgtgctattt gatcttaatc cctttagctg ttttaaacct tttaatcact gctttggcag
     7381 ttcttttata ggagtttgat atgaaaaatt attacttagt ggatgagaaa agaaaaactc
     7441 ctgttagcac ttgggagaaa atttcacaag ctttgcgtag aagtgttaaa ctagagcttt
     7501 ttctagggct ttttgtgatg atgagagaat tgcttaagag aaataatagc gctacgatta
     7561 aatatccttt tgaaaaggta aaacttgaca atcgttaccg tgctgttcat cgtctgatgc
     7621 gttttataga aagtgaaaac gaaagatgta taggttgtgg gctttgcgaa aaaatttgca
     7681 ttagtaattg tatcagaatg gaaacttctt tagatgaaaa tgggcgtaaa aaagtaggaa
     7741 attatagtat taatttaggg cgttgtattt attgtggttt ttgtgctgag gtttgccctg
     7801 aacttgctat agtacatgga acagagtatg aaaatgcagc tgagcaaagg tcttattttg
     7861 gctataagca agatttttta actcctattg ataagcttaa aaatcaagtt gaatttgaag
     7921 gagcaggaag ccttagaaaa gatgctgatt tattggtggt aaaaacacca aattattacg
     7981 atgtgatgat tgaaagagcc ttagaaaatc aaaatacaca agagcaagga gaaaataaat
     8041 gatagaaaat ttggcttttg tattttttag tgtagtggtt ttaggctttt ttggcattgc
     8101 ggttttaagt aaaaatatgc tttattctct ttctgcttta gcgggtggaa tggtgttttt
     8161 atcgggattt tattttttgc ttgatgcaga gtttttaggc gtgatacaaa ttattgttta
     8221 tagtggagct gtacttggac tttatagttt tgcgatgatg ttttttgatg cttctaaaga
     8281 atttaaagaa caacttaaag ctaaaaaaag tttttttact ttggtggttt taagtgcgat
     8341 tttacttttg actatgctta taggttttaa ataccaaaat atcagcacgg atttgccttt
     8401 aaatgatcct gctttgtttg attttaataa acaactggct ttagcgattt tttcaaaata
     8461 tcttttagct tttgagttta tagctatttt gcttttgatc gctttagttt gtgctatcac
     8521 tcttactcat aaagagctta caaaggaaaa acaatgatag aaaagtattt tttcgttgct
     8581 attttaatgt ttgtcatagg gcttgtaggg attttaaaaa gacaaaatct cattatgctt
     8641 tttatttcga gtgaaatttt attaaatagt gctaatttag ctttagtagc agcttctaaa
     8701 atgcacaatg atttaaatgg acaggttttt gcgcttttta tcatgggtgt agcggcttgt
     8761 gaagtagctg ttggtatagc tttgtgtgtg ctttggtata gaagaaaagg cactttagaa
     8821 ttaaaaagct taaaagaagt ggaggcttag tatgcaaaat ttggctttga tttctctttt
     8881 tagtcccttt gtagcttttt tgtttgcaag ttgttttgct ttgagtgaga aaaaacaatt
     8941 cgtagggata ttttgttcac ttctagtagc tttgagtact ttttgttctt tgtatttgct
     9001 tttttgcaat gaagctttta atgtgagttt gtttgaatgg tttgctggag taaattttgg
     9061 ttttgatata gatgctattt cgcttactat gatgagtatt gtaggtattg tagccacttg
     9121 tgtgcatttt tatagtattt tttatatggc tcatgatgaa ggttttaata aattttttgc
     9181 ttatttgggg ctttttgtct tttctatgct ttttttagtc atgagtgata attttttagg
     9241 acttttcgta ggttgggaag gcgttgggct ttgctcttgg ttgctcatag gtttttggta
     9301 taaaaatgat acttattctt ttgcggctaa tgaagctttt attatgaatc gtattgcgga
     9361 tttgggtatg cttttaggaa ttttttggct ttatttgcaa gcaggaactt taaaatatga
     9421 tgaagttttt tccatggcac aaagcctaga tcacaatgct ttgatcttaa tcgcaacttg
     9481 tttatttata ggggctatgg gaaaatctgc acaatttcct tttcacactt ggcttgctga
     9541 tgctatggca gggccaactc ctgtttctgc attaatccat gcagcaacca tggtaacagc
     9601 gggggtttat ttggtaattc gtgcgagtac gctttatgat ttagttcctg aagtttctta
     9661 tattattgcc ttactcggag cttttgtagc gatttttgca gcctctatgg ctttggtggt
     9721 tagggattta aaacgcatta ttgcttactc taccttatcg caacttggat atatgtttgt
     9781 ggctgcagga cttggggctt atggtatagc tttatttcac ttagctacgc atgctttttt
     9841 taaatcttta cttttcttag gcgctggaaa tgtaatgcat gctatgaatg ataaattaga
     9901 cattaaaaaa atgggtggac tttttaaacc tttaaaaatt acagctattt taatgtgtat
     9961 aggatcttta gctttagcag gaatttatcc ttttgcagga tttttctcta aagatttgat
    10021 tttgggatat tctttcattt cttttcacca tggtattttt ttagtgctct taatcgcagc
    10081 ttttttaaca gcattttata gctttagact tttaatgttg gtatttttta cccctgcaag
    10141 acatgatgaa catccacatg aagcaagtaa aatcgcactt ttggctatga gtcctttgat
    10201 ggttttagct attattgcag gatttttcga acatagtttt tttgaatatt taagcacaaa
    10261 attagttttt attgatgcgc aaaatcaaat tgtaatgatt tgtgcgagtg tagcagctat
    10321 tttgggtgca attttggcta tttttgctta taaaaattct tggtttaaag aaagtattga
    10381 agaaaataaa attcacaaac ttttaagtaa tgattatttt attcctagat tttatcatca
    10441 atttatcgtt tcaaaatatg aaagcttatg tacgatttta aaacattgtg atctttatat
    10501 ttttgacaga atagttgaaa aaattgcttt gtattctcaa aatatttcac aaaaaatgat
    10561 tatgccaaac agcttaaact taatgcttag gtttttggtg gcagcttttg tgattttgtt
    10621 gattttagta tggatggtgt aaaatgctaa attatttgat attttttcct ttaatttctg
    10681 cttttgtggt tttgctatta aatcgcggag gcgttaaggt ttttagcgtt gttgtaagtt
    10741 ttatgatttt ggctttaaat ttggatattt ttgcggattt tttacaaggg gtaagctttg
    10801 attataatct ctcttttaaa attttgaaat tttttagctt tcatgtagga gtagacagta
    10861 ttgcacttgt attgatgctt ttaagttctt tgatgatatt tttaagcttt ttatttttga
    10921 aactagaaca aaaagcgctt atatcttgta tattcttttt agaatttgct attatgggac
    10981 tttttagcgc aaaagatggt ttgttgtttt atgttttttg ggaattttct cttttgcctt
    11041 tgctttatat tatgggggtt tatggtaaag attttagagc aggggtgaaa ttttttatct
    11101 atgcttttgc gggttcaatt ttaatgcttg tagcattgat ttatcaagct tatttaaatt
    11161 atcagctttt aaatatcttc acttttgact tggaaatttg gaaaaataat gcctcagcag
    11221 taaattttac agagcaactt ttactttttg gagcattttt tatcgctttt gctatcaaag
    11281 ctcctttatt tccacttcat acttgggcac ctaaggttta tgcaaattcg cctatacttg
    11341 tttctgtaat gcttgtagtt tttaaaatgg ctccttttgg atttttactt ttttgtttac
    11401 cactttttcc agatgcgagt gtgtatttta tgcctttaat tgtagcttta tgtatagtaa
    11461 gtatcgttta taatgcttta attgcttata gagcagaaaa tattaaagaa ttgattgctt
    11521 atagttctat ttcacatctt ggtgtgatga ttttgggaat tttttcttta aatgctttgg
    11581 gtattagtgg tgcggttttt tatatgtttg cacatggtat tgtaacggga gctttatttt
    11641 taatggttga acttttatac caaagatatc atacttatga tatttctttt taccattctt
    11701 tagccaaaaa agcaccttta ttttcaattt tctttatgct cattttactt gcgagtgttt
    11761 ctttgccttt aactgtttct tttgtgggag agtttttaat tcttttaggt atagcaaaga
    11821 ttaatttatt ttacgctttg ttggcaggtt tggtgattat tttaggagcg atttatatgt
    11881 tcgcagtatt tagaaaaata tttttcatgc aaaaacaaag ctttatagag ggtttttctt
    11941 tacgttttag agaaatagta gcgcttgtgt gcattgtagt aatgattttt ggactagggc
    12001 ttatgccaaa tatactttta aagccgatac aaaaagatgt ggataatctt ataaaaacaa
    12061 tgaatattag agctgttgag caaaatactt tagatttttt atctaaaata ggagaggcaa
    12121 atgttaaata attttttaaa tttagaactt ttaaatataa gcttatctta tccattttta
    12181 tttttaatta caactgcaat agttcttttg ctttgctctg gtttttggaa atttcatcga
    12241 tcgttttata tcggcataag ttctttgtct ttgattgtaa gtgctttttt gattttaaat
    12301 aatgcaaatg ctcaaggttt agaagcaaaa gcttttttgg ctactttaaa taatgatatt
    12361 gtttcatttt atgcttcttt ggtgattttg tgtttttcat ttttatatct tttaatgcaa
    12421 aaagaagaaa atcaaggtga attttatgtt ttatttttat ttatgattgc atctttgctt
    12481 ttaatggttt caagttcaaa tttagtactt atttttatag gacttgagag ttcttcttta
    12541 gcactttata ctttaatagc aatgcgtgga agtgataatg ctatttcaag tgcgataaaa
    12601 tactttagtg tagcggctgt aggagctggg ttttttgtta tggctgtagc ttttatttat
    12661 ttaaaaacag gaactttaga tttatctgct aatttagcgt tgaaaaatga gtttcaaaaa
    12721 gatcccatgc ttttgggtgc tggagtgatg attttcgttc tttgtgcaat taagctttct
    12781 ttggcgcctt ttcatttttg gcttaaagat gtgtattatg cagcacatac aaatttggtt
    12841 gcttttattt cagttgtccc aaaagttgcc atgttggttg tggttattcg tttgtttgat
    12901 tttttaaata atacaggttt tgaatatatc ataatagttc tagcgatttt ttctatgctt
    12961 ataggcgctt ttgcggctct aagtcaaaac aatatcaaaa aaatgtttgc ttatagttct
    13021 gtagtgcatt cttctttggt tttgatagct tgcattcctt tattaaaaga acaaaatttt
    13081 gatggaattt tgcttgctat ttttggatat tggactttat ttgcttttgc aaattatgct
    13141 gtatttatga ttttaagtaa ttatgagaat aattcttatg agagtttaaa tgggcttttg
    13201 gttaaaaaac ctttaattgc tttttgttta agcattagtg tgctttcttt agcaggtatt
    13261 ccgccttttg gagtattttg gggtaaattt atgattttaa atacagtaat tttaaatgga
    13321 tattggtatt tggcgctttt tgtggcttta tcttctgtta ttatgcttta tgcgtattta
    13381 aagattttaa ttcatgtttt atttatgaaa aatgataggg tttataatat taagtttagt
    13441 tttatacaaa attttatttt agctttttgt gtttgtgtaa gcatttttgc tatattgtta
    13501 atgttataag agttttgcta taattatttt atgagaatat tatttttaat tttattaagt
    13561 tttttaaatg cttttgcttt tgagcttgtt ttaaacacgg gtcgcgaaaa taatcaagct
    13621 tttgcagttt tacatgcgag taatgattta gaatttacat gtcaaaaatt tattaccgaa
    13681 gcaaaagttc attttgaatg tgatattgca ggtatggttg ataataaatt aaaagatcag
    13741 agtttttctg cttttgattt aaaatttata caagaagctc aaaaaattaa aatgatcatt
    13801 ttgccaaaaa tacaagcaag aatgtttgac acttctcaaa atatttatat agataaagaa
    13861 ctcagttcat caagttcgca taaaagtaag gcttttactt ttatttttac accagaacta
    13921 gcacctatta aagactatga tggactcgat tttaatatca attttccaca tgagagtttg
    13981 ccttatgttg gagctttgga tttaaattct gatcctgttg ttattcctca aagtgcagat
    14041 atcaatactt atttacgcat caaaaaagaa tacgataagg ctaattacaa tcaagtggtg
    14101 attgatgcac aaaatgctat caatagatat cgtggcagta tttttactag tgaatttata
    14161 ctttataaat taagagctca aaataaactt tacactcaag atccaagcat gcgtgatcaa
    14221 caaattttag aaaagatgat tgatgatgct aaaaattgga cgcgtacttt tacaagtgat
    14281 aaaaattttt cagaagtttt acatataatg ttaagaactt atatcgcttt agctcagcgt
    14341 gctgatgtag agtatacaat gtcgattttg gataatgaac aacctaataa ttattttact
    14401 cagttatcaa aacttgatta tgcagactat atttataatt taaatgaaaa agaaaaagct
    14461 gtaaatattt atgaaaatac ttattttaat acaaaaaatt tagatttagc tgcaagagca
    14521 gctatgagtt tggcaaagaa tttgctttca aatgagcaag taaataaagc tatagaatat
    14581 attaatacca ttttaaaagc caatcctgaa tattttggaa aagatattcc aagatcttta
    14641 gaacttgcta aattatttaa tcaaaaggga caatttgata taagtgcaag tatttatgaa
    14701 gatgcctttg ctaaaatgtc caaacttgat ccaagttatg aagaaacttt aaaagattta
    14761 gccttggttt tatcacatgc taacagatct agtgatgcta aaaaatacct tgatttgtat
    14821 atggatgatt atttagatgg taagtattta gatgaaatta aaaaagcaag tgatgaggta
    14881 ttctttgctt taggtgataa taatgcaagc tttttgcatc agcgttatac agatttaatg
    14941 aagcaatatg caaataaaga tgagaatatt gcaaataaag ctttagatga agatgttgca
    15001 ctttattata aagagggaaa ttttagtgct attttagctt ataaagatct tatagaaagt
    15061 aaaaaaattc caaatgctac tcaattttta gagaaagcag ccattaatga tttaaaaaat
    15121 gccataaaag ctgataattg tatcaatgct gcaaatattt ttatgcgttt tagtgcttat
    15181 gatataggtc agaaaattga gaataaaaaa caaatgttag cttgtcttat cagaacttct
    15241 aatgttgaac aagcacttga ttatatagat aaaaattata atgaagattc tatattttat
    15301 ggtcttcaaa aagcatctat tctttttgac aataaacaat atcctcaggt gattaaaatt
    15361 tctaaagaca tagctaattc tagaatttta aaaagtgatg atgagaattt taaggcttat
    15421 tatttgcaat ttttatcttt attgcgttta aatgactata atcaagccat taaaattttg
    15481 caaattttag aaagttttcc aatgaatttt agtatggtgg aagcttatga tgctttactt
    15541 tcttacgcta atgatcataa tatgcaaaca actattttaa cttacgcacc taaggccatt
    15601 gactatcaaa attttaaagg tataaatctt tttagtccta atttagaatt tatatatctt
    15661 gatgctttga ctaaaatcaa taaaaatgaa gaaagtttag ctgttttaac agatttactt
    15721 aaattaaaac tttcagatga agatagagca agagctttat atatccaagc cttaacttat
    15781 gaaagaatgc aaaatataca agctgaaaaa gaaagtttaa aacaatgtct tgaaatcaaa
    15841 agtgcttcaa attggcagaa tttatgtaag agtaaaaatc aaattttaaa tcaataagta
    15901 aatttagaga taactagctt tttggctagt tatctaag
//
LOCUS       DARGBD010000033        15858 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.033, whole genome shotgun sequence.
ACCESSION   DARGBD010000033 DARGBD010000000
VERSION     DARGBD010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15858
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.033"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            20..829
                     /locus_tag="SFZ04_000860"
     CDS             20..829
                     /locus_tag="SFZ04_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG8065152.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKDFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            971..1738
                     /locus_tag="SFZ04_000861"
     CDS             971..1738
                     /locus_tag="SFZ04_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HEG8065153.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            1748..2488
                     /gene="pxpB"
                     /locus_tag="SFZ04_000862"
     CDS             1748..2488
                     /gene="pxpB"
                     /locus_tag="SFZ04_000862"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HEG8065154.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            2469..3434
                     /locus_tag="SFZ04_000863"
     CDS             2469..3434
                     /locus_tag="SFZ04_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HEG8065155.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(3431..4327)
                     /locus_tag="SFZ04_000864"
     CDS             complement(3431..4327)
                     /locus_tag="SFZ04_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG8065156.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(4360..4938)
                     /locus_tag="SFZ04_000865"
     CDS             complement(4360..4938)
                     /locus_tag="SFZ04_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG8065157.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEMQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            5038..5385
                     /locus_tag="SFZ04_000866"
     CDS             5038..5385
                     /locus_tag="SFZ04_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8065158.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            5373..5822
                     /locus_tag="SFZ04_000867"
     CDS             5373..5822
                     /locus_tag="SFZ04_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEG8065159.1"
                     /translation="MLELIGELSLQNYMGEWLEIARKPAFFQKSCLNSKAKYELKYKN
                     GIPYVEIENFCSKKNEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFVDSEYK
                     VAIVGSPDKKYLWILARNIIDEKNIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(5824..6900)
                     /locus_tag="SFZ04_000868"
     CDS             complement(5824..6900)
                     /locus_tag="SFZ04_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEG8065160.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSCDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            complement(7128..10223)
                     /locus_tag="SFZ04_000869"
     CDS             complement(7128..10223)
                     /locus_tag="SFZ04_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEG8065161.1"
                     /translation="MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVN
                     ALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADI
                     INLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN
                     SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNK
                     SLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNK
                     AISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITDRNDLD
                     DQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLS
                     LRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLVQKIVYGFAKYLRDALPNATYIGF
                     TGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGKRLVNE
                     LDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRS
                     VAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMR
                     NIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVV
                     DYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEKYFELD
                     TGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAI
                     KARFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLL
                     EVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEA
                     LDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQ
                     IIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELAN
                     E"
     gene            complement(10226..11992)
                     /locus_tag="SFZ04_000870"
     CDS             complement(10226..11992)
                     /locus_tag="SFZ04_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8065162.1"
                     /translation="MNKYKFVKFQVKNFRSLLDITLNIDNNNINTICGENNIGKTNFL
                     RALNLFFNHNNGVEYNQNEDRPYHIQKGSTGGRKTELIGYFTKNNVTHILKVEFHKDK
                     IVYILNGKMVEWKVARDIVESFKLLFIEASNVNMPSVISAILENDALLALDNKRKKQS
                     EPLRTLKLFIEQSKKAIEDIEKDINIYLKQMLDFDNTLKDKEIKIRFAEFEKLRDVVK
                     TMTSVTLDDGNDHLMDHKGSGAQRIVLLSLMQYITDKITTDIIWAIDEPEAFLQPKLQ
                     KKIMEIFKNIVREKKQPIIMTTHSQYFVDFNNLVNTHLFKLTKEEKIYARKKGRVFQE
                     INTKPIYIGTAFEKLSVIKKHLGIETNDNWDIMPYNILVEGEEDKKYLQMLIEILNLS
                     MPNIIHSGGATKIAGFLEYFNNQCSYTSFKPYFICIFDNDEEGRKQYNKISKDNLYPN
                     IKLDAKKLKRYGESIQENNRDIWEIEDFMPIKIIVDAVNIILKYKQYNTITNSQISDR
                     KKLAFKNMSILDYLEKCIADRNEEKERFILNTESRKKEICQNAFRAREKYTKNDLEDY
                     HVDFMNELIDSFNKVDLIKKDN"
     gene            complement(12003..13145)
                     /locus_tag="SFZ04_000871"
     CDS             complement(12003..13145)
                     /locus_tag="SFZ04_000871"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8065163.1"
                     /translation="MNNWKKCKLGDIAEITMGQSPKSEFYNFDNIGMPFLQGNRTFGR
                     KYPYFDTYCTEYKKIAKKGEILFSVRAPVGDINFANNDICIGRGLCSMNAKNGENEFL
                     YYLLHNLRSVIINNESGSVFGSVNKNDLQTIEILLPLLEEQRQIATILSSIDDKIELL
                     HEQNKTLEELAQTLFLNWFKDREFNSTISDFISMQNGFAFKSKDFIDYGNNGVIKIKN
                     ISNGIVDIVNTDKISQNTINEVNNKFNINSGDILFAMTGAEIGKMGIVPSTNKKLWLN
                     QRVGMVKERFLGARFLAYIHLTSEFGYDYVINSATGSAQENISATDIENCPFVKLTSE
                     EIVSYSKQLNDFFEKIIFNLGEIQTLENMRDILIPKLLNGEIKITN"
     gene            complement(13278..14780)
                     /locus_tag="SFZ04_000872"
     CDS             complement(13278..14780)
                     /locus_tag="SFZ04_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HEG8065164.1"
                     /translation="MAKKKEIKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISD
                     SFMQKYEELLKEQDDGADPEDADEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEA
                     MDEIEKHNDTLKGVLPKVYAKDNLDSKCLGELIDLIGNIAFDTGKSTDVLGHVFEYFL
                     GEFALAEGKQGGQFYTPKCVVELLVTMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQG
                     RLDDISIYGQESNQTTYKLAKMNLAIRKIESSQVIWNNEGSFLNDAHKDLKADFIIAN
                     PPFNDSDWSGELLENDGRWKYGVPPASNANYAWIQHFLYHLSPNGGVAGFVLAKGALT
                     SNTTNEAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFID
                     ARDLGTRINRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELSYVL
                     TPGRYVGLADSDDEFDFDTRFNELLAKLKSQIKTEQELSETILKNLEKIK"
     gene            14835..15126
                     /locus_tag="SFZ04_000873"
                     /pseudo
     CDS             14835..15126
                     /locus_tag="SFZ04_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809523.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
     gene            complement(15138..15772)
                     /locus_tag="SFZ04_000874"
                     /pseudo
     CDS             complement(15138..15772)
                     /locus_tag="SFZ04_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
BASE COUNT         5195 a         2719 c         2307 g         5637 t
ORIGIN      
        1 aaatttataa ggaaaaaaaa tgaaaaaaat catttcttta gcccttgctt tagctttaag
       61 tgcaagtgca gcagaactta aaatggcaac tacaacaagc actgacaata caggactttt
      121 agatgctcta aaacctcttt atgaaaaaga aagtggcaat accttaaaat gggttgccgt
      181 aggaacaggt gcggctttaa aaatgggtga agattgcaat gctgatgtgc tttttgtgca
      241 ttctccaaag gctgaaaaag aatttatgaa aaaagacttt ggcgtagata gaactcctgt
      301 gatgtataat gattttatca tcatcgcaga taaatcttta gcttctaaat ttaaaggtaa
      361 aaatttaaaa gaaagcttag aacttatcaa aaatgaaaag cttactttca tctcaagagg
      421 cgataaatca ggcactgaca ataaagaaaa aagcctttgg aaaaatcttg gtggtgttcc
      481 tgaaaagcaa agctggtatc aacaaagcgg acaaggtatg ttagcaagca ttaaaatcgc
      541 tgaagaaaaa aaaggtgtga ttttaaccga tcgtggtact tatatcaaat atgaagccaa
      601 tgaaaaaggc aaaccaaact tagttattgt aaatgaaggc gatgatagtc ttaaaaattt
      661 ttattctgtt atagcgacaa atcctaagca ttgtaaaaat gtaaattata cagaagctag
      721 taaatttatc aaatgggtaa caagtgataa gactttaaat ttcattgctg attttaaact
      781 tcttaataaa cctttatttg taattgatgc aaaaacaaga aaagactaaa aattaagcag
      841 gttttaacct gcttaaaata tcatttttta cttattgtaa cttttttatt tatttttcaa
      901 aacttttagc ttatttaaaa ttcttcttta gatataataa aatcaataat taaatataca
      961 aggtcaaata atgttcaaag tggatttaaa tagtgattta ggggaaagtt ttggcgccta
     1021 taaaatggga atggatgaag aaattttaaa atttgtaagt tcagtaaatg tcgcttgtgg
     1081 ctttcatgcg ggtgatcctt gtgtgatgga tgaaacctta aatttagcca agcaaaatgg
     1141 tgtttgcata ggagcacatc catcttatcc tgatcttttg ggttttggaa gacgcaatat
     1201 gcaaataagc tttgaagagg ctaaaaacta tgccttgtat caactaggag ctttatttgg
     1261 ctttgctaag gcaaaaggta tgaaaataca gcattttaaa gcccatgggg cgctttataa
     1321 tatggcagct attgatgaaa atttagcctt agcactttgt gaggcagtgg cgagttttga
     1381 tgaaaatatt atttttctag ggcttagtaa ttctgctatg aatgaagcag ctaagaaaaa
     1441 gggtttaaga tatgctaatg aagtttttgc agatcgtgcc tataatgatg atggcacttt
     1501 agtttcaaga aaattagaag gggcgttaat acacgatgaa aatttagcta tcaaacgcgt
     1561 gataaaaatg ataaaagaaa gcaaagttac aagcataaat ggcaaggaaa ttgatttaaa
     1621 agccgatagt atttgtgttc atggggataa tgcaaaagct ttagaatttg ttaaaaaaat
     1681 caaagaaaat ttaaaaaaag agcaaattca aatttgtgct ttggaaaatt ttatataagt
     1741 tttagcaatg tttagtgtgc attttagtgg aagtaaagct ttgcttttgc gttttgagca
     1801 agaaatttca cctcaaatca atgcctatgt tttaagcaca gaacaaagga tacaaaaagc
     1861 cctaaaagaa ggtgaaattt atgggattga tgagttggta agtgcttatg caagcttgct
     1921 tatatatttt aatccttgcg tgctttcttt aaattccttg cttgattttt tggaaaaaat
     1981 taaaaaggat attaaacttg cagaacaaaa ctcaagtctt tgtatagaag ttccactttg
     2041 ttatgatgaa gaatttgggc tggatttaga atttgtgtgc aaacacaatc aaatttcaaa
     2101 agaagagctt atatctcttc acactaaacc ttattatctt gtttttatgc taggttttat
     2161 ggcaggtttt ccttatcttg gaggtttaga tgaaagactt tttaccccac gcctttcaag
     2221 ccctagagca aaaatagaag ctggaagtgt aggtatagcc gataaacaaa caggagttta
     2281 tcccatatca agtccagggg gttggcaaat cattgctaga acacctttgg aattttttga
     2341 taaagaagat gaaaaaaatc ccactctttt aaaagcgggt atgtttttaa aatttaaagc
     2401 catttcaaaa gatgaatttt tcgatatcca agagcaagtt gctaaaaaag tctatcaaaa
     2461 ggaaatttat gagtataaaa atcattgaag catctataaa ttcaagtttg caagactttg
     2521 gtagaaaaaa atttgctaaa tttggcatag caagaagtgg agctatggat gaagatgctt
     2581 taagaatggc aaatatcttg cttggaaaca aacaagatga agcaggaatt gagctttgtt
     2641 taaagggtgg aaaatacgaa tttttagatg agaattattt tgttttaagt ggagctgaat
     2701 ttgaggcaaa gcttgataat caaaaaatca aaacttgcaa agtatatcaa gcaaataaag
     2761 gcgatatttt agaacttgat ttagcaaaaa taggttttcg tgggtattta tgcgtagcgg
     2821 gtggctttga agtaaaaagt tttttaaact ctaaatccag tgatgctaaa atgggagctg
     2881 gagtttttga aggaagagct ttgcaaaaag atgatatttt aaatactcat aatactttta
     2941 taccttttaa tttagaagct agagaatgtg aaaatcctct ttttaaaagc cctaaagagc
     3001 ctattatacg cgttatttta ggaacaaatg aagatgcttt tacccaaaaa ggcatagaaa
     3061 cctttttaaa tactacttat aaagtaggtt taaaaagcga tagaatggca atttatgcag
     3121 aatctagtga aagtatagag cataaaaact cagcagatat catctcagat cctgcggttt
     3181 ttggaagtat acaagtgcca aaaagtggta ttcctatcat tttaatggca ggaagacaaa
     3241 gcacaggagg ctatacaaaa atagccacgg ttatagaaaa tgatctaagc ttactcgcac
     3301 aagctaagtt aggttctagc tttaaatttc aaagcattag catgcaagaa gccttagaac
     3361 tttataaaca aagagaaatg aaatttaaag ctatggatca aaaaatcaat cttgattttg
     3421 aaaatttaat ctaagctttt ttgccataaa tattgataaa atatatagca cctatagcca
     3481 aggcacaacc taacaaggta agtgcatttg gcacctcatc tagtataaaa taactacaaa
     3541 ttaaagcact agcaggagtg attaaaacaa aagaatttgc cttaacgctt cctaaaatgt
     3601 gaatcccata ataataaata ctagttccta taatagttga taaaaaagcc acgacaaaca
     3661 tactgatcca aaatttaaat tcaaaatgaa aaatttcata actttttaca tcaaacaata
     3721 tccaagaaaa cattaaaata gaaatgagat taatataaaa gttaatcgcc aaagggtgag
     3781 ctcctttggc tttatgatta aacactgcca tcaaagccca aataaaagaa caagttaaaa
     3841 ataaaatatt aaatttacca aataaatctt ctaaactccc taaatttagc aaacaaaatc
     3901 cagataataa acctaaaaat aagcctagaa tttcactctt tgtgatcttg tgagttgatt
     3961 ttttgttttt ttgaaaaaat atcgctatca taaatatcaa ataagaaaaa ataggaatca
     4021 tagtggttac taaaactcct cctttgcctg ccaagccgtg ctttatagcg ataaaaaata
     4081 caaaggcata aagcccattt aaaactcctg ctatcaatac ccattttaag gcagtttttt
     4141 cgattttaag aggaattttt aagaagttta aaacaaaaaa tgaacccaat acaacaaaga
     4201 aaaaacgcca aaaggtaata atagaagtat ccgtataatt tgctaaaatc ttagatgttg
     4261 gccaagatga gccccataaa aacatagcaa taacaagcaa gatatacaaa tactttgttc
     4321 gagtcaatgt tgcaccttga aatttttaag tcaaattttt taaaaaattt ttttcaagtg
     4381 tagttcatac tcgtttagat atttttccac ttgaggattt tttaccacat cattacacat
     4441 aaaagttggt aaagctttca tacctataaa ttcatgagcc ttatgcaaat gccaatacac
     4501 catatctaca ccctttcctt caaaaaattc atttttatca ttaaaggctt caagaggtgc
     4561 attccaagtg agagaaaaca tgtatttttt accatgatct aaaccacctt ttccgtagtt
     4621 tttactagga ttttcatgag ttcttccatc atttttaaaa agcactccag cacccaaacc
     4681 aaacacttca tcgatatatt ttttaactat ccaaggctcc cccatccacc aagctggcat
     4741 ttgatagatc acagcatcag cttttataaa tttttgcatc tcttctttag gatcatatcc
     4801 ttgatctatg tgagtttgat ctacctcgta tcctagtgtt tttaaaattt ctaaagcatg
     4861 attatgcaat gtcaaattaa gttgtccttt tgaatttcca aattctttag caccattaag
     4921 caagagtata tttttcattt ttatcctttt ttaaatttta tgatacaatt ataacttagc
     4981 ataatatcat tttcaataca gaaaataaag taatatacta tactaaagga atgttaaatg
     5041 actaaagaga attctccgtg caatttcgaa gaatgtggat ttaactatac tctagcatta
     5101 attaatggaa aatataaaat gagtatttta tactgcttat ttcgctatga aatcgtgcgt
     5161 tataatgaac tcaaacgctt tttaagctcc atatctttta aaactttaac caatacctta
     5221 agagaactag aaaacgatgg tttaattatc agaaaagaat acgctcaaat tccacccaag
     5281 gtagaatata gcttatccaa acgtggacaa agtttaattc ccattttaca agctatgagc
     5341 aaatggggca agaaagacaa aaaagggaaa aaatgcttga attaattggt gaactttctt
     5401 tgcaaaatta tatgggagaa tggcttgaaa tagctagaaa accggccttt tttcaaaaat
     5461 cttgcctaaa ttcaaaggca aaatacgagc ttaaatacaa aaatggcatt ccttatgtag
     5521 aaattgagaa tttttgcagt aaaaaaaatg aaatttcaag tataaagggt aaggcaaaaa
     5581 tcgtttcaaa taggcaatta gcagtgagat ttaacatctt tatgaacctt tttaataaag
     5641 taaattatga aatcattttt gttgatagcg agtataaagt tgccattgtg ggtagtcctg
     5701 ataaaaaata tctttggatt ttagcaagaa atataataga tgaaaaaaat ataaaagagc
     5761 ttttaaacat cgctaagcaa aggggatttg acattagcga tgtggttttt gataagtatt
     5821 aaattattct tttgtcatat caatgacata gcgaaattta gcctttcctg aggttagatt
     5881 ttcataagct ttatcgattt cttgtggggt aataagctcg gtttctggat aaattccgtg
     5941 ttttaaagaa aaatcaagca tttcttgagt ttcagcaata ccaccaatta acgagccata
     6001 aaccttttta cctgccttat gtacaaaggt tatcacgctg atacttggag caacttcgtg
     6061 aggtggcaaa cccactatcg ccatttcacc gccaaattta agcaaatcca aataaatagc
     6121 aggattataa ggcgttggaa tggttgagat gattaaatca aaacgttctt ttacagcgtt
     6181 tttatcgcag cttgtgtaaa atgagcttac acccatagcc aaagcatcgg cttttttgtt
     6241 ttcatttcta gcaaaaacgc taacctttgc acccattttc acagcatatt taaccgccat
     6301 cataccaagt ccgccaaatc ccgctactgc tacgcttgag ccttctttga tatttgaaaa
     6361 tttaagcgga gaataagtgg taattcctgc acaaagcaaa ggcgcgactt tttccatcgg
     6421 tgcatctttt ggcacacaaa cggcaaattt ttcacttaca actatgttgt ttgagtagcc
     6481 cccataagtg ttttcattgc catgaaatac atcacaacta ttgtaagtaa agatggtttt
     6541 gccattttcg caaaactgct cttgtgagcg tttgcaagca tcgcactcac cgcatgaatt
     6601 taccatacaa ccaacccctg cgtaatctcc tactttaaat ttactcacat ttttacccac
     6661 agcgataact tctcctgcta tctcatgccc aggcacgcaa ggataagtag cttctcccca
     6721 ctcgcttctt gcggtgtgaa tatcgctatg acaaatgcct gcatatagga ttttaatcaa
     6781 aatatcatta tcgccaatag catggcggct aaattcaaaa ggtgtaaatt tcgcatcctt
     6841 gctaagcatt gcatagcctt tacttgcgat gcgattgttt tctaaaattt tgtattgcat
     6901 ttttgctcct tttttgattt tttataatta taaaacatta gagtagctat aagtcaagag
     6961 tgaaaataat tttttaaaaa ttagtataaa tactggatac tagtgaaatt gtataaaatt
     7021 aagcaaattt tataacaaag acatagttgc aacgacaaat caagctatct ataataaaga
     7081 taaaagaaaa taatacaaac aaatttaatt tcagtatcgc ttaaattcta ctcgttagct
     7141 aattccttag ccaaaatttc agcttgagct aaaactccat caattgcaag ttgttgcata
     7201 tcaggtggat aaccatactt atttaacact ctttttacag ctactcttaa tcttgctctt
     7261 acattttctt ttatcatcca gtctatactt acattgtttt tgataatttg cagtatttca
     7321 ctaacgagtg ctaatagttt ttcattgcct aaaatctttt catactcatc attacaagca
     7381 agtgctgagt aaaaggcgta ttcatagtct tttaaaccta acttcttagc ctcatcttcc
     7441 atacttacta tgcttttact catatttatt agctcatcta gcgcctcgct tgatgagatt
     7501 agcttattgt tatatttttt gatagcatca ctaagcattt gtgctaattt tttagccttt
     7561 gttaggctta gcttttctct tgcttttatc tcatcattta gtatcttttt tagcatttca
     7621 aaggctaaat ttttacgctt catattcttt acttctagta aaaactcatc agaaagtata
     7681 gatatatcag gcttttttat accactagca tcaaaaatat ccaccacttt agatgataca
     7741 atagctttat ctactacttg ctttatcaaa gcttgattaa gcaaattttc attctcattt
     7801 tctttagcaa actttaaaaa cctagccttt atcgcataca taaaagcgat tttattcttt
     7861 atgctcaaag ctttttcgtg tggcatagct atcgtgtagg ctttatcaag tgctgcaaat
     7921 tcttttataa atctgttctt accatcttca tttgataata tatgctcttc tacatcaagt
     7981 atatattcaa gtttagcccc cgtatcaagt tcaaagtatt tttcatagtc atttggcagc
     8041 atttgttcta cgatttcaag cttttctatc atcactttta cagcgtcttc ttgagtagtg
     8101 attatatcgc ccttgccacc actttcacta taaaatgata aagctttttt caaatcactt
     8161 gcaatcccaa gataatccac cacaagccca ctaggtttat ccttataaac cctatttact
     8221 ctagctatag cttgcattag attatgccct ttcataggct tatctatata aagagtatga
     8281 agcgatggca catcaaagcc agttagccac atatccacca ctataactag ttttaattca
     8341 tcgtctatat ttctcatacg atttgccaaa aactgctttt gaatcttact tgtatgatgt
     8401 ttactaaact ctaccccatc gctagagctt gaagtcatca ctacttttat agccccgcta
     8461 cttagctcat cgctatgcca acttggtctt atttttatga tttcatcata tagttttata
     8521 gctacgcttc ggcttatact tactatcata ccttttccgc cgagcttact agaccttgtt
     8581 tcaaagtgtt ttactatatc tttagcgatt tgttttagtc tgcttgtgct acctactaaa
     8641 gcttctagct tagtagcttt tgctttttgg ctatcttggt tttcaagctt ttcatctaat
     8701 tcatttacaa gcctttttcc ttcttcgctt agctctattt tggcaagtct gctttcataa
     8761 tatatactca cagtagcacc atcttcaaca gctcttgata tatcatatat atctatgtag
     8821 tttccaaaaa ctgcaggggt gtttatatca tggctttcaa ttggcgttcc tgtaaatcct
     8881 atataagtag catttggcaa agcatcacgc agatattttg cgaaaccata aactatcttt
     8941 tgcactagca catcgccact ttttgacttt tcttctacta cttttgcatc aaagccgtat
     9001 tgggttctgt gtgcttcatc tgcaattacg atgatattat ctctaagcga taagcactca
     9061 aatacattat cattttctgg actaaatttt tgaatagtag taaataccac tccaccacta
     9121 gctaccctta aaagctcttt taaatgctct ttatcgtttg cttgttttgg ctcttgtctt
     9181 aaaaggttcg cacaacttgc aaaagtacca aaaagctgat catctagatc atttctatcc
     9241 gtgataagca aaatcgtagg attatttaaa gcctttatcg ctttagcact ataaaacacc
     9301 atagacaaag acttcccact accttgcgta tgccacacca cgccaccttt tttatctccg
     9361 tctttgctac ttgctgtgat tgttctacta atggctttat ttactgcgta gtattgatga
     9421 tagcaagcga tttttttggt agtttttata cttaaaatac catttaaatc tcttatttgc
     9481 tctttttcaa aaactatgaa attgcaaatg atatctagca aggtttttgg atttagcata
     9541 ccatctatta aggttttaat ttctaaagac ttgtttggag cgtagtttat cccatcgcta
     9601 cttttccacg ccataaacct tgaaaaatca gccgaaatac tccccgccct agcaaaatac
     9661 ccatcgctta tcacacaaaa agcattatat gtaaaaatac ttgggattgt ttgtttataa
     9721 gtgtttattt gattataagc tgagtttatc gtggcgtttt catcgcttgg gctttttagc
     9781 tccattaaaa caagcggaat tccatttata tatagcacta catcggggat tttgttttct
     9841 ttagcttctg tgatgcttag ctggtttgtt gctataaatt cattgttgct tgcattatta
     9901 aaatcaatta gatttatgat atcagctctg ctttcgccgt cttttgtagt gtttatattt
     9961 accccattta caagcttata atgaaagttt tcattgctat ctaaaaggct aagatgattt
    10021 ttgcttttta gctccttata aatttcatta gcttttgata aatcaagctg tggatttagc
    10081 ctacaaagtg catttacaag gctagtttct agcaaaactt catcagtggc tcttacaggc
    10141 ttttcatagc accacccatg ctcaagtagt gatgatataa caaactgctc taaatcaaac
    10201 tcactagtct tcgccttgct catttttagt tatccttttt tatcaaatct actttgttaa
    10261 agctatcaat aagttcattc ataaaatcaa catgataatc ttctaaatca ttttttgtat
    10321 atttttcacg agccctaaat gcgttttggc aaatttcttt ttttcttgat tcagtgttta
    10381 atataaatct ttctttctct tcatttctat cagcaataca tttttctaaa taatccaaaa
    10441 ttgacatatt tttaaatgct agtttttttc tatcacttat ctgagagttt gttatcgtat
    10501 tgtattgttt atacttaagt ataatattaa ctgcatctac tattattttt ataggcatga
    10561 aatcttcaat ctcccaaata tctctattat tttcttgtat cgattctcca tatcttttta
    10621 atttttttgc atctagcttt atgtttggat ataaattatc ttttgatatt ttattgtatt
    10681 gttttctacc ttcttcatcg ttatcaaaaa tacatataaa atatggttta aaagaagtat
    10741 aactgcactg attattaaaa tattctaaaa aacctgctat tttagttgca ccaccagaat
    10801 gtattatatt tggcatagat aaatttaaaa tttctattag catttgcaaa tatttcttat
    10861 cttcttctcc ttcaactaaa atattataag gcataatatc ccaattatca ttggtttcta
    10921 tgcctaaatg ttttttaata acagataact tttcaaacgc agtgcctata taaatcggtt
    10981 ttgtgttaat ttcttgaaat actctacctt tttttctagc ataaatcttt tcttcttttg
    11041 tcaatttaaa caaatgagta ttgactaaat tattaaaatc tacaaagtat tgagaatgtg
    11101 ttgtcataat tataggctgc tttttctctc ttacaatatt tttaaatatt tccataatct
    11161 ttttttgtaa ttttggctgc aaaaatgctt ctggttcatc aattgcccat attatatctg
    11221 ttgtaatttt atctgtaata tattgcatta aagataaaag tactattctt tgagcaccac
    11281 tccctttatg atccattaag tggtcatttc catcgtctaa agtaacagat gtcatagttt
    11341 ttacaacatc tcttaatttt tcaaattcgg caaatctaat ttttatttcc ttgtctttta
    11401 aggtgttatc aaaatctaac atttgtttta aatatatatt aatatccttt tctatatctt
    11461 ctatagcttt ctttgattgt tctatgaata atttcaatgt tcttaaaggc tcactttgct
    11521 tttttcgttt attatctaag gctaacaaag catcgttttc taaaatagca gaaattacgc
    11581 taggcatatt cacattactt gcttctataa ataaaagttt aaaactttct acaatatctc
    11641 tagcaacttt ccattcaacc atctttccat ttaatatata cacaatctta tctttatgaa
    11701 attcaacttt taaaatatgt gtgacattat tttttgtaaa atagcctatt aattctgttt
    11761 ttctaccacc agttgatccc ttttgaatat gatatggtct atcttcattt tgattatact
    11821 ccacaccatt attatgatta aaaaataaat ttaaggctct caaaaaatta gtctttccaa
    11881 tattattttc accgcaaatt gtatttatat tattattgtc tatatttaaa gtaatatcca
    11941 ataaagaacg aaagttttta acctgaaatt ttacaaactt atatttattc acacattctc
    12001 ctttagttag ttatttttat ttctccgttt aggagttttg ggataagtat atcacgcata
    12061 ttttctaggg tttgaatttc tcctagatta aatataattt tttcaaaaaa atcatttaat
    12121 tgtttagaat aactcacaat ctcttcactc gtaagcttaa caaatggaca attttcaata
    12181 tctgtcgcac ttatattttc ttgagcactg ccagtagctg aattgataac atagtcataa
    12241 ccaaattcag aagttaaatg tatatatgct aaaaacctag ctcctaaaaa cctttctttt
    12301 accattccta ctcgctgatt taaccataat tttttatttg tacttggaac gatacccatt
    12361 ttacctatct cagcaccagt cattgcaaat aaaatatctc cagaatttat attaaatttg
    12421 ttattaactt catttatagt attttggctt atcttatcag tatttacaat atctacaatt
    12481 ccatttgaaa tattttttat ctttattact ccattgttac cataatctat aaaatcttta
    12541 ctcttaaaag caaaaccatt ttgcatagat ataaaatcac taatagtgct attaaattct
    12601 ctatctttaa accaatttaa aaaaagagtt tgggcgagtt cttctagggt tttgttttgc
    12661 tcgtgtagta gttctatctt gtcatcaata ctacttaaga tagtagcaat ttgcctttgc
    12721 tcttctaata gcggtaataa aatttctatt gtttgtaaat catttttatt taccgagcca
    12781 aaaacactac cagactcatt atttataata acacttctta agttgtgtaa taagtaatat
    12841 aaaaattcat tttcaccatt ttttgcattc atggagcata agcccctacc gatacaaata
    12901 tcattgtttg cgaaattaat atctccgaca ggagctctca cactaaataa aatctcaccc
    12961 tttttagcta tttttttata ttcagtgcaa tatgtatcaa aataaggata tttcctacca
    13021 aaagtcctat tgccttgtaa aaatggcata cctatattat caaaattata aaattctgat
    13081 tttggagatt gccccattgt tatctctgca atatccccaa gcttacattt tttccaatta
    13141 ttcatatctt aatccctcgg aatttatttg cgtaaaaaat ccaaaaaata cacgaaataa
    13201 attcgagaat ttaaattcgg aatttccttt gtttaagctt ggtttaaaag ataatgacga
    13261 aagcacaaca caaaacatta ttttatcttc tctaaatttt ttaagatagt ttcgctcagc
    13321 tcttgctcag ttttgatttg ggattttaac tttgctaaaa gctcgttaaa tctagtatca
    13381 aaatcaaact catcatcact atcagcaagc cccacataac gccctggggt aagcacataa
    13441 gaaagctctc ttatctcatc tatgctaaca cttttacaaa agccttttat gtcttcataa
    13501 tcagtgccgt ttttccatgc tttataaata tttgcgattt ggtttatatc gtctttgttt
    13561 agggttttgt tgcgtctatt tatcctagtt cctaaatctc ttgcatctat aaaaagcgtt
    13621 tttttgactg tctttggtag cttttggcgt cttataaacc aaagtgatgc aggaatacct
    13681 gtatttaaaa acagctttgc gggtagattt actatacaat ctatcaaatc atcttcaata
    13741 agtgcttttc taatggctgc ttcatttgtg gtgttgcttg taagtgcgcc tttagctagg
    13801 acaaatcccg ctacaccgcc gtttggtgat agatgatata aaaagtgctg tatccaagcg
    13861 tagttggcgt tgcttgctgg tgggacgccg tatttccatc tgccatcgtt ttctaacagt
    13921 tcgccgctcc agtccgagtc gttaaatggt ggattggcta taataaaatc ggcttttaag
    13981 tctttatgag cgtcgtttaa aaatgagcct tcgttgttcc atatcacttg tgagctttcg
    14041 atttttctta tggctaggtt cattttggcg agtttgtagg tagtctgatt tgactcttga
    14101 ccatagattg agatgtcatc tagtctgcct tggtgagatt ttacaaactc ttcgctttga
    14161 acaaacatac cgccacttcc acagcaagga tcaaacactc tgcctttata tggctcaagc
    14221 atagttacta ggagctctac gacgcatttt ggagtgtaga attgtccgcc ttgtttgcct
    14281 tcagctaggg caaattcacc taaaaaatac tcaaatacat gacctaaaac atcggtgctt
    14341 ttaccagtgt caaaggcgat atttcctata agatctataa gttcgcctag gcatttacta
    14401 tctaagttat ctttggcata gacttttggc aaaactcctt ttagagtatc gttgtgtttt
    14461 tctatctcgt ccattgcttc atctagcatt ttgcctattt tgggattttt ggcgttatct
    14521 cttatgtagt tgtagcgaga tttttctgga acgaagaaga tattgtcagc taggtattca
    14581 tctgcatctt ctgggtcggc tccatcatct tgttctttta ataactcttc gtatttttgc
    14641 ataaagctat cgctaatgta gcgtaaaaat ataagtccta aaactatgtg tttatactct
    14701 gctgcgtcga tatttttgcg taatttatca gcacttttcc ataacgcatc ttctagtttt
    14761 atttcttttt tctttgccat ttttatcctt aaataatttt attaagtata acaaatagta
    14821 ttttaaaagc aaatgatgat aaggtgtatt actacgagct tataccacct tacaagctta
    14881 ctaaaaacaa gcctttagaa tacgcatatt ttaaggaatt tctaaaatgc tacaaagaaa
    14941 agaaaaatca ctgctaattc ttggctgctt agcaaaaaag aacttgaaga aagaaattat
    15001 gatttaagtg ctaaaaatcc aaatgtaaaa gaagaaaaaa tcctaagaac tagcgaagag
    15061 attttaaatt atttaaaact tcaaaataag tatttaaaag aaataaaaga tgccttaaaa
    15121 gcataaggca tctttattta taggcttatt accccaatgc gtgtgttttc atagcaagaa
    15181 ttaagcacta tgtctatcat agcactagca taatcactat agctgatttt actttcattg
    15241 ttggcattca cttcaaattt ttcgcctatg attttataat gattgctttt tggaagatct
    15301 ggtgaaaaaa tagcagatgg gctcacatat acccatttaa aacctttttc attgcgtaaa
    15361 aattccaata cttccgcact tgcttagcta tatccaaata ctctttagga aaatcaggca
    15421 tatccataag tcttgtagta tgattctcat ccatatacaa acttccagca ccccctacaa
    15481 caaataattt agccttactt ccttgtaaaa ttacactcaa gcattctata tgctttttat
    15541 gtaagcttaa attttcccat tctccaaaag cgtcaataat aatatcaaaa tctatcagat
    15601 ctttagaatc aagttcaaaa agatctcttt gtactatttt agcttgaggt aaaaattcat
    15661 tcattttaga gctattgcgt acaaaacata ctggctctaa atttcttttt aaagcttctt
    15721 tgctgatttc tttgcctact ttaccgcttg cacataaaat tgctattttc ataatatctc
    15781 ctttttaagt atttttacat aaaaaatgca atctagaaat tataaatata tttactacta
    15841 aaaatcaagt agatatta
//
LOCUS       DARGBD010000034        15339 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.034, whole genome shotgun sequence.
ACCESSION   DARGBD010000034 DARGBD010000000
VERSION     DARGBD010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15339
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.034"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            142..3571
                     /locus_tag="SFZ04_000875"
                     /pseudo
     CDS             142..3571
                     /locus_tag="SFZ04_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344058.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(3805..4770)
                     /locus_tag="SFZ04_000876"
     CDS             complement(3805..4770)
                     /locus_tag="SFZ04_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEG8065165.1"
                     /translation="MYRKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTHASDFLSTGSLFSEKKLLEIKTSKKIPIKDLKILVELCKNNADNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLRVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFDKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKINGKIDFKELLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKSEYELKTNPKLVKKEFLISNLLKLARILKN"
     gene            complement(4763..6697)
                     /locus_tag="SFZ04_000877"
     CDS             complement(4763..6697)
                     /locus_tag="SFZ04_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HEG8065166.1"
                     /translation="MKEFLNSLSYGISSHEVSNEFKQILRELLANHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTVLKIEN
                     ENNNIIEVLGHIDDESIDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILVQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADTRKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTHANLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            6816..7838
                     /gene="ilvC"
                     /locus_tag="SFZ04_000878"
     CDS             6816..7838
                     /gene="ilvC"
                     /locus_tag="SFZ04_000878"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEG8065167.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVVSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            7842..8924
                     /locus_tag="SFZ04_000879"
     CDS             7842..8924
                     /locus_tag="SFZ04_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEG8065168.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFILKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEVLKNQNIFFVDSKTI
                     GNSKANKIAKELNVPYIQRDVFLDNEDDVNYVKKQLESAVKLTQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKSVDLVYLSEIYGK"
     gene            8914..9687
                     /locus_tag="SFZ04_000880"
     CDS             8914..9687
                     /locus_tag="SFZ04_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEG8065169.1"
                     /translation="MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            9684..10067
                     /gene="ruvX"
                     /locus_tag="SFZ04_000881"
     CDS             9684..10067
                     /gene="ruvX"
                     /locus_tag="SFZ04_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEG8065170.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            10096..10935
                     /locus_tag="SFZ04_000882"
     CDS             10096..10935
                     /locus_tag="SFZ04_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEG8065171.1"
                     /translation="MQNILSSFTQEKNVCVFANTLKISIEELEKEFLKQKLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(11110..11607)
                     /gene="msrA"
                     /locus_tag="SFZ04_000883"
     CDS             complement(11110..11607)
                     /gene="msrA"
                     /locus_tag="SFZ04_000883"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEG8065172.1"
                     /translation="MKNIILGGGCFWCIEAVFERLKGVINTEVGYSGGKPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILILFFKIHDPTSIDKQGEDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(11649..12167)
                     /gene="ppa"
                     /locus_tag="SFZ04_000884"
     CDS             complement(11649..12167)
                     /gene="ppa"
                     /locus_tag="SFZ04_000884"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEG8065173.1"
                     /translation="MNLNKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            complement(12177..12755)
                     /locus_tag="SFZ04_000885"
     CDS             complement(12177..12755)
                     /locus_tag="SFZ04_000885"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEG8065174.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERAIEPIVADMKELIKKIQSI"
     gene            complement(12752..14503)
                     /gene="aspS"
                     /locus_tag="SFZ04_000886"
     CDS             complement(12752..14503)
                     /gene="aspS"
                     /locus_tag="SFZ04_000886"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEG8065175.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLITEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFTKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELKLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANNIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            14594..>15339
                     /locus_tag="SFZ04_000887"
     CDS             14594..>15339
                     /locus_tag="SFZ04_000887"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HEG8065176.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCMLCIDGQENYK"
BASE COUNT         5255 a         2188 c         2587 g         5309 t
ORIGIN      
        1 ttaaactaaa aatttaaacc aaaattttaa taataattta agtataatta ttatatagtc
       61 ttcactattt tcatattaca gttttatatt atttttaaat ataaacaaga aaatataaat
      121 ataaaaggaa agggaatatt tatgaataaa actgcattaa ctaaaacata cacaaaagat
      181 atacaaaatt cctgtttaaa ttctaaaaag atagttttat ctttagctgc tatttctttt
      241 tcggcaagtt gtactcatgc tacacttact cctgaaatag aaacttacga agagacaaat
      301 agacatgcta aagctaggtc aggttttcgt tctaaaagtt cgaataataa taagactata
      361 agtagtttac aaaattcaac tcaaactgta agtggcaccg gcaatactct agttatagaa
      421 agtggtggaa ctattactat ttctaatggt gggcaacaag cagtaaactt tcaaccaaat
      481 tcttcaactt ctaccttttt aaataaagga actcttatag gtggaaataa tactgctagt
      541 gttcaactag gagcaaatac aaataacggt gttaccatag aaacctttga taatcaaggt
      601 atcataggta atggttcttc taaatttgga gtaacagttt gggggggggg ataaagatag
      661 ctctaaatct ataatcagta attttagtaa tagtggaact attcactcta atgctggtga
      721 aagtatttat tttggtaacg ccaaaatatc aagttttgct aatagtggga ctattaagag
      781 taaacaaggc acaggagtaa atatatctca aggaacaagt atagagaaat ttaacaatac
      841 cggagctatt gaaggcaaga gaatgggtgt aaatgttcgt tcaacaataa ataccttcgt
      901 caatgacggt ttaattgctg caacgaacga tggaatacag ataaatgcta atgtaaaaac
      961 attaataaat aagggaacca taaaaggaga tgctatatct ataagatcat taggtggaac
     1021 tatagaaaca ttgaccaatg aaggcattgt ggatggtaaa agtgctggta tttacatgag
     1081 cggaggtcgt gttaaaactc ttataaataa aggtaccatt aatcatacag acagttcggt
     1141 aggttggggt gctggtataa aactcgaaaa aggtagtacc atagaaaata tcatcaacac
     1201 aggaactatc aattctagtg gttttggaat agctgtaact catggtaaat ttggaacact
     1261 taccataaaa gatggaggta aggtttatgg aaaatacgag ggaataggag tgggtcaatg
     1321 gcaaactcta ggagatttat atatagatgg aagttcaagt aatggcacag taagtggaat
     1381 ttatagtgag gaacgtggaa tttcattaga tgctaactca cgaactcaaa aaatagaact
     1441 taaaaatggc ggcattataa aaggtaatat ccatggtata agattggata atggtgcctc
     1501 tttaagtgga gaaatgattt tatctggcaa aggttctagg gtagaaggtg gaagaggtgc
     1561 tggtatattg aatcgaagtg gaaaaataga aggctctata aaagtagaag atggagcaac
     1621 tgttacggct acttcgaatc tagccatagt taactataac tcaggaagta taacaggtgg
     1681 tattactgtt agtggggaaa atactaaact tcaaggaaat ataatcaata caggtaatgc
     1741 ttctataggt agtgatatca agatagaagg tggagctaag gtagaaggtg gtcttgttaa
     1801 tcaaggtaat ggaagtatct caggaagtgt tcaagtaagt ggtggtagta gtattgattc
     1861 cattaccaat gagggtaatg gagctatttc tggttcaatt actgtagata aagatagtaa
     1921 acttgattct atcactaaca cttctacatc atctacaggt ataagtggtt ctattactaa
     1981 caatagtgat aataaacttg aaatttctaa ttcaggtaat atcggtggta agattgaaag
     2041 tacaggtagt gctgatatgg tgattagcaa tagtaatggt ggaactatta gtggcggtat
     2101 tagttcttca ggaagtggaa gcactagtat ttccaattca caaggctcaa ccataaataa
     2161 cggcatcact gtttcaggat cagcacaagt tgaaatctcc aatcaaggct cagtaggtaa
     2221 agatgaaaat ggtaatacag taactaacaa tggtagtggt agtgttggaa tcaaagattg
     2281 gcttgtttct acagataaaa acacaggtaa attaaacact gtggttatag gtggaagtgg
     2341 agcttttaat gtaaaagtag aaaacatcac cgtagatcaa agcaatgttg atcttgaaga
     2401 gctaaacgat ataaacaaca tcatctcagg tgttaatcaa aacaatattg gcaatatagg
     2461 aaccaatgga agtggagaaa tatctttaag ctttgatcca ataacaggaa agcttactac
     2521 agattttaat cttaatgctt ccatatcagg tgcaaccttt agatctttaa tctctactac
     2581 ttcaagaaga tcaaccttta tagataatgt tatgggtaat tctatgcaaa gctttgcttt
     2641 agcttcttca agtaaatctc aaagcatcgc tatgtctgaa aagggtaatt tatatgcaga
     2701 tgcaagtgat tatataaaga gtgatttaaa taatggaagc tatggttcta ataaagaaca
     2761 ttctttattc atccttcctt atacttcttc acagaatgtt gaactttctt taaatgaaga
     2821 aagtaaagga cacactaaag gaaccattat aggttattct actttaaaag acagtggaat
     2881 atatggtgtg tatgcaggtt atgaagatac aaaaatgggt tcaacttatt ttgatattaa
     2941 taatagaacc tattatgcag gtttaaaata ctttaatacc ttatttacta cagaaaaagg
     3001 tcaagaagtt tatatcaaag ctcaaggtaa agctgctttg attaaaaatg atttaactga
     3061 aaaaatagga aataatgaag ctaaagctga acctaattct tatgcttatg gagtcaatac
     3121 agccttaggt atgaatttta tttctaataa agatatattc tctcctgaaa taggtcttgc
     3181 ttatgaagga ggttatactg aagctttttc tatgaaagac accataggac aagcaacagt
     3241 taaaggtgga gaaagaacct atgcaaacta tttaaatctt ttctctacta aaacaagtct
     3301 tacttggttt agagattggt tgcctaattt aaaaacttca gtagaacttg gagctaagtt
     3361 taatatcaat cctaaagtag aagctgaggc tagatttggt aatataaaag taagtgatga
     3421 gtttgattta ccaagagtac aaaaatttgt aagcacttct tttatcgttc ctgttaatga
     3481 agctttctat tttagtttaa actataatgg aatgtttgat aaagatggca atacccatac
     3541 aggatttgct cagtttaatt atctttggta atcttataaa agataatact tagtttaatt
     3601 agtttactct cctacttgtt aaaaatttca tcctgataat tttaaaatta ttaggatgga
     3661 tgtttttaag gttattaaac tctttttaga ttgcaatcat tcttttaaag tattttaaaa
     3721 actcaacaaa gattataaca atacaatcat tttaaattat tttaatacga ttaaaaagaa
     3781 gtgaagagga ttgaagagta aaaattaatt ttttaaaatc cttgcaagtt taagtaaatt
     3841 tgaaatcaaa aattcttttt ttacgagttt aggattggtt ttaagttcgt attcgctttt
     3901 aagcaaaaga gtgaaaattt ctttatattg ttcgattttt aaactaaagg cttgagagct
     3961 taaattttgt cccacttgag ggggtggagt gtagcctaaa agctctttaa aatcaatttt
     4021 accattgatt ttagcataaa gtgcaatttt aaataaacga taaaaagagt tatataaaga
     4081 gttgattaaa gcaatttcat taaaattatc taaaattttt tcaagttcgc ttttaaagtc
     4141 ttgttttttt aaaattttat caaaaaagct ttcaaaactt cctgtattta aactatagca
     4201 gtattgttct atggtttttt catctactct taaaccacta aatttattaa gctcactcgc
     4261 agcaagatac aagttttcat caaaacttgt aaaaagagta aataaagcat tttgagtgat
     4321 ttcaaccctt agttgttttg cttttatgct taaaagctcc acgccttctt tagctccgtt
     4381 agctttaaaa aatcttacaa aatgaggaga gaaaattttt tctatgtcgc tttgtttaga
     4441 actttcatca taaagctcta aaagaaagaa attgtccgca ttgtttttac aaagttcgac
     4501 taaaatttta agatctttta ttggaatttt tttagaagtt ttaatttcta gtaatttttt
     4561 ttcgctaaaa agcgatcctg tgcttaaaaa atcacttgca tgagtgaagt tgtattcttc
     4621 aaaaaaaagt tttaaagttt catcgggctt atatttttct tttataaatt cagcataaag
     4681 ttcgctttga aaattatctg ctccataaag aaagaaaaaa ttaggtattg aatctttaga
     4741 aagcagggtt tggagctctt ttctatacat tttcttcctt tataagtctt tgggtgattt
     4801 tagcataaat ttttgccata actatatccg cttccatgat ttgcacttca acattttcta
     4861 gtaaattcgc atgcgtatca taaaggatta tatccgctcc tttgatttca tcatctagtt
     4921 tagctatgca aactccgtca ttttgcacaa ctaaagcttt aaattttttg cctatatttt
     4981 tagctgccca tctagcaaat tttctatcca taaaatcaaa agcaacctta tccgcctctc
     5041 tttcaagtgt gctaagattc tcgcaagtgc tttctatgtt taaaagtaga taattaaaaa
     5101 gtttttcatc gtttttttgt ttggctttta aaagtctgtg taaaataaga tcagaatacc
     5161 ttcttatagg gcttgtaaaa tgtgagtatt tatcaaaacc taagccaaaa tgccccgcat
     5221 ttacgctaga gtattccgct tttttttgtg ctttgatgat gagtttatct acttctgctc
     5281 ttaaatttaa ttcatcagct aaagcttgta tgtcgcgtat gagctcagga agattgggtt
     5341 taaaatttac atcgattccg agttcgcgta attcatttaa aagcttatcg atttttcttg
     5401 tatcagcact taagtgattt ctaaaaacgc ctatatctat gagttttgct gcggctttat
     5461 tggctaaaag catacaatct tcgatcaaat tatgcgaagg cgtgtctttt tcaaaaactg
     5521 tgctttttag acttaaattt tcatctaaat tcattcttaa ttcttcggtg cgaaattcaa
     5581 aggcattttt aagacgcatt ttgcgtaaat tttttgtgat ttcaaaaagc tcataaagcc
     5641 atgaaagttc ttttaaatca ggtttttgta ccaaaatttc atcaacttca tcgtaattaa
     5701 aacggcgttt tgagttgata ataccttcaa aaagttcttc tttgatgact ttattttcat
     5761 gatcgagtgt gattttaaaa caatacgcta agcgatctaa atgaggtttt aaagaacaga
     5821 tattttcact taaaggatgc ggtaacatag gtatagcaat gtgcggaaaa taaatagaaa
     5881 atccacgatt tcttgcttct ttatctatag cactataagc ataaacatat tcgctaacat
     5941 cagcaatagc tacataaatt tctcgttttt gagtgtcaaa ataaatcgca tcatcaaaat
     6001 cttttgcatg tataggatct atagtgcaaa aaggcaaggc tcttaaatcc atgcgatttt
     6061 catacatact cgcatcaaca ctatcgccgt ttgctagggc ttctttgata caagcgtcgc
     6121 taaattcgtt gtttttattg aaaagggcta aagagatttt ttcatctata ctttcatcat
     6181 caatatgccc taaaacttct atgatattgt tattttcatt ttctattttt aaaactgttc
     6241 ctaaaggtag tgcttttaag gatttttgag aagcttttaa ggcggtgctt aatcctgttt
     6301 tgatattcat tccaagtacg gcttcgccat accttttggt gatcactaaa gaggtttcat
     6361 tggctctttt tagaaccaaa atcacctttg cactggggcg ttttttcttt aaaggtagaa
     6421 gttttactgc aactatatct ttatagtttg caccttttag gtttttgttt tctatcaaaa
     6481 gatctttttt aaaactttca tcaaagcatt gtaaaaaacc tgtacctttg ctcgaaatat
     6541 caagcacccc aaaggcaaaa ccattgttaa gatagtattt gtttttgtgt tctttaatga
     6601 tatgattggc taaaagctct cttaaaattt gtttaaattc attgcttact tcgtgagagc
     6661 taatgccata actaagactg tttaaaaatt ctttcacttt taatacttta tgattttttg
     6721 taaaattctt acataaagtt tataaaaaaa atatgaaatt tatactttaa ttgctataat
     6781 aataccttta atttttgaat ttttaaggag tgaatatggc tattacagta tattatgata
     6841 aagattgtga tttaaattta atcaaatcaa aaaaagtagc aattataggt tttggctctc
     6901 aaggacacgc tcatgcgatg aatttaaggg ataatggcgt aaatgtaact atcggacttc
     6961 gcgaaggtag tgtaagtgct gttaaagcaa aaaatgctgg ttttgaagtg gtgagtgtga
     7021 gtgaggcttc taagatagcg gatgtgatta tgattttagc tcctgatgaa attcaagcag
     7081 atatttttaa tgtcgaaata aaaccaaatt taagtgaagg taaggctata gcttttgcac
     7141 acggttttaa tatccattat ggtcaaattg ttgttccaaa aggtgtagat gttatcatga
     7201 tagcacctaa agcaccagga catacagtaa gaaatgaatt tactttaggt ggtggaactc
     7261 cttgcttgat agctattcat caagatgaaa gtaaaaatgc taaaaattta gctttaagtt
     7321 atgcaagcgc gattgggggt ggacgcacag gcattataga aacaaccttt aaagctgaaa
     7381 cagaaacaga tctttttggt gaacaagccg tgctttgtgg tggacttagt gctttgattc
     7441 aagcaggttt tgaaactttg gttgaagcag gttatgaacc tgaaatggct tattttgagt
     7501 gtttgcatga aatgaaactc attgtggatt tgatttatca aggtggtatt gcagatatgc
     7561 gttattctat ttcaaatact gcagaatacg gcgattacat cacagggcca aagattatca
     7621 ctgaagagac taaaaaagcg atgaaaggtg ttttaaaaga tatacaaaat ggtgtttttg
     7681 caaaagattt tatcttagaa cgccgtgcag gttttgctag aatgcatgca gaacgcaaaa
     7741 atatgaatga ttctttgata gaaaaaacag gacgcaattt gcgtgctatg atgccttgga
     7801 tcagtgctaa aaaattagta gataaagata agaactaaac attgtcaaag aaaaaattag
     7861 ttcaaattca gcgttattta atcatagcta tacttttttt actttgcata gctttagctt
     7921 tgggaatttt agtaaaatat caaaattccc aagatgtttc ttctgttaag ccggattatt
     7981 ttattgataa gcaagaagat ttaatttcat taaataaaga tcattatgaa attggtattt
     8041 ttcaagagaa tgagtttgat aataataaat ctgtaagtat tttagagcaa aaaattcaag
     8101 aaattgatga tttaaacaca agtttaaatg agcaaaattt aagcagtgtg gagcagaatt
     8161 taagtttaga gcaaaatcag agtttagaac aaaattttat tctaaaagat acaaatttaa
     8221 cccaagatca aaatttaact tttaatgaag atattcattt aaataaaatt tctaaaaaac
     8281 caaaacttgc tattattatc gatgatatgg caaatgcaag tcaggttaga ggtttaaaag
     8341 ctttaaattt aaagttaaat ccttcttttt ttccgccaga taaaaaccat agcgaaacgc
     8401 caaaacttgc tttaaaattt gatttttata tggtgcattt acctttagca gcgattaatt
     8461 acaataaacc tgagcttgat actttaaatc caaatgatag caaagaaaga atttttaaaa
     8521 aaatcaagca aattaaaaaa gattttaagg atttaagata catcaataat cacacgggaa
     8581 gtttatttac aagcaatgaa gaagctatga gaaagcttta tgaggtttta aaaaatcaaa
     8641 atatattttt tgtagattct aaaactatag gaaattctaa agcaaataaa atagccaaag
     8701 agttaaatgt tccttatata caaagagatg tgtttttgga taatgaagat gatgttaatt
     8761 atgttaaaaa acaacttgaa agtgcggtaa aacttacaca aaaaaaaggt tttgttatag
     8821 ccataggaca tcctagaaaa aatactttta aagctttaga gcaaagtaaa gatttgttaa
     8881 aaagcgttga tcttgtgtat ttgagtgaaa tttatggcaa gtgaaatttt gcctgatgaa
     8941 tttttagagc tttttcaaga tttaaaaaag cctcctaaaa aattacacta taaaggaaat
     9001 ttatctttat taaaacaaga taaaatcgct attataggtt caaggcgtat gagtgtttat
     9061 acgaaaaatt gtgttttttc cttagcgagt atgcttaaaa atgctcatct ttgcgtggta
     9121 agtggcggtg ctttgggtgt ggatatcacc gcaagtatgg cagctatgcc aaatactata
     9181 ggtatttttg ccaatggttt agatcaaatt tatccaagaa ctaatgaaaa aatcattaaa
     9241 caaatttatg aaaatgcttt agctttaagt gaatacgaag atgattattt gccaaaaaat
     9301 tatgattttt tactaagaaa tcgtttggtt attgctttaa gtaaggccgt tgtggttgca
     9361 caagcagata taaaaagtgg ttctatgcag agtgcaaaac ttgctttaga actcaataaa
     9421 cctttatatg ttttaccaca aagactagaa gaaagcacag gaactaattt tcttttaaag
     9481 gaaaataaag caaagttaat ttgtgatttt aaagaatttg taagtgagtt tgcaagtata
     9541 gatataaatc aagatgagtt tttagagttt tgtaaaaaag gtgtgagtgt tgatgaggct
     9601 ttaaaaattt atggacaaaa agtttatgaa tatgaacttg agggaaaaat ttccatagaa
     9661 gggcttttta taagggtttt agcatgagag ctttggcttt agatgtaggt ttaaaacgca
     9721 taggtgtagc gctttgcata gataaaaaga tcgctttgcc tttagatgca gttttaagaa
     9781 aaaatcgcaa tcaagccgct aatgaaatca aaaatttact taaaatacat gagatttctt
     9841 tactcattgt aggcattcct aagggtggat caagtgaaga agaaatgaca agacgcatta
     9901 agcattttgt ttctttgctt gaatttgata aagaaatttg ctttgtagat gaaagcggaa
     9961 caagcaaaga agctttagga tacggcgtag ccaatacacg caaaaaagat ggtaaattag
    10021 actccttatc cgcttttatc atgataaagg attattttgc tctctagaat agaaaaactt
    10081 tataccaaag atgaaatgca aaatatttta tcttctttta ctcaagaaaa aaatgtttgt
    10141 gtatttgcaa atactttaaa aattagcatt gaagaattag aaaaagaatt tttaaaacaa
    10201 aaattaaaat ttaaaaagat caatgcttat tgttatttgt ttgatgccaa agataaggct
    10261 atcttaagtt ctatgaaagc ttttaatgag gcgcactttt atatacaaaa ttattcttct
    10321 tatttgtgtg ctttaaattt agaagtcaaa gcagggcaaa gggttcttga tatgtgtgca
    10381 gctccgggtg gtaaaagtat caatcttgca aattttatgc aaaatacagg ttatttagct
    10441 tgcaatgaga tgagtaggga tagatttttt attttgcaaa aaaatcttaa aaattacggc
    10501 gtgaatgcta aagtttttat gaaagatggt aaaaatatag gcaatttatg tcctttaaaa
    10561 tttgataaaa tcttacttga tgcaccttgt tcgacttttg ctaaaatagg ttttgatttg
    10621 gaaaaaagtt ataaagaaat caaaaatatt gcaaaaactc aaaaaaaact tctacattct
    10681 gctttaaagg cattaaaaat aggtggagag cttgtatata gtacttgcac ctttaccaaa
    10741 gaagaaaatg aagaagtgat agagaatgct ttaaaaagtg agtttaaatt agagctttta
    10801 gatattgatt tggaaaatgt tgaggctaaa gcagggcaaa gtgaagaatt tgctgaaatt
    10861 tcaaaatgca gacggatttt accaagctta gactatgatg gatttttcat agctaaactt
    10921 aggaaattat gttaattaat aaaattattc acatttaaat acaaattcat aaaaaaactt
    10981 aaaaaacaat aaataatttt ttctttattt taaagcttaa agttctattt ttaagtactt
    11041 tgaaaagaaa atcacagcgt gaaaaggctg tgaataaagt tgaatttttt taaccttaaa
    11101 aagatgaaat tagtctgatt gtattttttg cagttttgga gctattacag cttgacaata
    11161 tccttgatcg ggattattta taaaataatg ttgatgatag ttttcagctt tatagtaagt
    11221 ttgcaatctt gaaattttag taactatttt tttactaaat attttttgct gttcttcaat
    11281 gaaattttga gctaaaattt tatcttcttc attttcgtaa aatattattg agcgatattg
    11341 tatgccaata tcttcacctt gtttatctat acttgttgga tcatgaattt taaaaaagag
    11401 tattaggatt tcaagaagag agatttgttt ttcatcgtaa tttattttga caacttctat
    11461 gttaccatca ccattacaca cgctttcata gctaggattt ggttttcctc cgctatatcc
    11521 aacttcagta ttgattacac cttttagacg ttcaaatacg gcttcaatac accaaaaaca
    11581 accaccacct aaaatgatat ttttcattgc gagttttcct taatcttagc cctttgaaag
    11641 ggctaagatt atttatagtt tttgattgct ttttctaaaa tttcaattgc ggctttttca
    11701 tctttgaagt cttgcacttt aacccattta tttggttcta aaattttata agtttcaaag
    11761 aagtttttga ttttattcaa agttgcctgt ggtaagtctg tataagtttt tatattatca
    11821 tatctcgcat ctatttttga atttggaact gcaagaagtt tttcgtccat tccactttca
    11881 tcttccatga ttaaaacacc gattaagcgg caaggaatca cagctccagc ttggatagga
    11941 tattcattaa gcactaaaat atctacagga tcaccatcat cagccaaagt attagcaata
    12001 aaaccatagt ttgctgggta aaacatcgcg ctagccataa cgcgatctac catgatagca
    12061 ccgctatctt tatcgatttc gtattttata tttgagccat atggaatttc aattacggca
    12121 ttgattttat ttggaatatc tccgattttg attttgttta aattcatttt ttctccttat
    12181 atactttgaa tttttttaat cagttctttc atgtctgcaa cgataggttc gatagcgcgc
    12241 tctccatcga taataaaatg aagttttttc ttttgataaa aatctaaaat ttcatttaaa
    12301 ggttctgtat aaactttcat tctattgtaa aacacttctt cattatcatc tgcgccacga
    12361 tttctgccta aaactctttc tttggcaact tcttcgctta ctcttacttc tatgacgcct
    12421 ttaagacaaa tttcattttg ctcacttaaa accttatcaa attccatcat ttgctctacg
    12481 cttcttggat agccatcgat gatgatagtt ttagttggag cagcttttag agcacaaact
    12541 atagtattta taacaacatc taaaggaaca agattgcctt tggagataaa actatctata
    12601 gtttttccaa gctcgctccc gcttgctact tcagctctta aaagatctcc tgttgaatag
    12661 tgtgtaatat ttgtcgcatc tgcttgtgcg attaaactag catcggtagt ttttccacta
    12721 cctggtgcac ctatgattaa aaacaattct ttcattttat attctccctt aatttgattc
    12781 ctaattctct cattgcttca ttgctagcag gcgatggtgc atctgtcatt aagcattgcg
    12841 ctctttgggt ttttggaaag gctataacct ctcttatgtt gtttgctcct gtaactagca
    12901 tgatgagtct atcaagtcct atagcgatac ctccatgtgg tggagcacca aaacttaaag
    12961 catcaagcaa gaagccaaat ttttcttttt gttgttcttc atcgatattt aaaagtttaa
    13021 atactttttg ttgaatatca tttttatgga ttcttatact acctccacct agctcaacgc
    13081 catttaacac tacatcataa gcaatagatg aaatttcttc taaatcagtc tcatcaatat
    13141 tttttggcat ggtaaaagga tggtgcatcg cagaataact tccgtcatca ttttgctcaa
    13201 acataggaaa atcaacaacc cataagaatt ccaaggcatt tggatctata agttttaact
    13261 cgttggctaa gaaaattcta aatcttccca tataatcaag cacggttttt ttagctcctg
    13321 caccgaaaaa taccacatct cctacttcaa gctcacagcg tttgcttagc tcatttaaat
    13381 cttcttcgct aaagaattta caaagtggac ctttaagccc atctttttta acttgtatga
    13441 aagctaagcc ttgggcgcca aatttacgca caaattcttc aaatctttgc atttgtcttt
    13501 ttgaaaaaat agtatcgcct tttggaacgc gtatggcttt gatgcgattt ttctttgtat
    13561 ctttggcaat atttgcaaaa atttcattat ttgacttagt gaaaatatca atcacatcaa
    13621 taaatttaag atcaaatctt aaatccggct tatcagagcc ataattttcc atagcgtctt
    13681 tgtattgcat ttgtctaaaa ggggtttgaa tttctttgcc gcaagctttg aaaatatctt
    13741 ttaaaaaagt ttcagctacc ttgatcacat ctttttgttc gcaaaagctc atttcaacat
    13801 caatttgtgt gaattcaggt tggcgatcag ctcttaaatc ttcatctcta aaacattttg
    13861 caatttgaaa ataacgatca aaaccgctac acattaaaag ttgtttgaaa agctgagggc
    13921 tttgtggaag agcataaaat tcaccctgat gcacacgaga aggcacgaga taatctcttg
    13981 cgccttcggg agtagctttg gtaagaatag gggtttcaac ttctaaaaat cccatatttg
    14041 ccaaagaatt tctagctgct atacaagctt tagaacgcaa ggcaaaattt tcataaagtt
    14101 taggatttct taaatctaaa aagcgatatt ttaagcgtaa ttcttcattt acactttcat
    14161 cagcgatagc aaaaggaggt acggcacttt cattttctat ggtaagttta gaaacaacta
    14221 cttcgatttc tcctgttttt aacttaggat ttacaagtcc ttcgccacgc ggacgaatag
    14281 taccttctgt aataagtaca aattcatttc ttgcattgga agcgatttca tgagcttctt
    14341 tactatcatt tggatcgcaa acaagttgga taataccgct tctatctctt aaatctataa
    14401 aaataactcc accatgatcg cggtagctat ttacccaacc gcaaagttta acgctttgac
    14461 caacatggga aattcccaag tctgtattat aatgacttcg caaatttatt ccttgaaaaa
    14521 gattttttaa gataatgaac aaaattatag tatttttatt cttttgcttt gctaagattt
    14581 gatataattt tttatgcaaa ataaaataga ttataaaaat attaaaaaaa ttggacttgt
    14641 tacgcgaccc aatgtgagtt tagataagga aattttaaaa cttcaatcga ttttatctat
    14701 atataaagtt gaacttgtat tgtttaaaga aagttctgaa attttagatt tgccaaagta
    14761 tggattggat gatttgttta aaatatctga ttttgttatt tctttaggtg gagatggaac
    14821 tttgatttct ttatgtcgta aagcttgtga atatgataaa gcagttttag gaattcatgc
    14881 tggacattta ggttttttaa cagattttaa agttgatgaa gctgaaaatt tttttcaagc
    14941 tttttttcaa ggagaattta gaatagaaaa gccttatttg ttaagtgttt ttttagaaga
    15001 taagcaagga aaaattttag aaaaattagc ttttaacgat gtggtcatca gtaaaaacaa
    15061 tcaagcttct atggctcata tagaagtttt tagaaaagaa aagaaattta atgaatattt
    15121 tggagatggg cttattgttg caactcctgc gggttcaaca gcttataatt taagtgcaaa
    15181 tggacccata gtttatactt tagctcaagc ttttatctta actcctgttt gttctcattc
    15241 tttaacacaa cgccctattg tcttgccaaa aggttttgaa atagagatta tggcaaagga
    15301 ttgcatgctt tgcattgatg ggcaagaaaa ttataaaat
//
LOCUS       DARGBD010000035        15270 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.035, whole genome shotgun sequence.
ACCESSION   DARGBD010000035 DARGBD010000000
VERSION     DARGBD010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15270
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.035"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(100..483)
                     /gene="queF"
                     /locus_tag="SFZ04_000888"
     CDS             complement(100..483)
                     /gene="queF"
                     /locus_tag="SFZ04_000888"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEG8065177.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPNKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            643..1242
                     /locus_tag="SFZ04_000889"
     CDS             643..1242
                     /locus_tag="SFZ04_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEG8065178.1"
                     /translation="MRKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKAQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGANKSDIKELEDFVIPHELIPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRV"
     gene            complement(1247..2128)
                     /gene="metA"
                     /locus_tag="SFZ04_000890"
     CDS             complement(1247..2128)
                     /gene="metA"
                     /locus_tag="SFZ04_000890"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEG8065179.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGSRRAKHQDIRPQEILIVNLMS
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLEEVKKHKFDGA
                     IVTGAPVEQMDFEKVAYWEELLEIFDFLKQNVTSSMYICWGAMAALKYFYGVDKISLD
                     KKIFGVYKHDKVSPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKILLRNKKI
                     GSALLRDEKNIFILGHLEYFKETLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(2211..3482)
                     /locus_tag="SFZ04_000891"
     CDS             complement(2211..3482)
                     /locus_tag="SFZ04_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEG8065180.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRLSNPTSDVLGQRLANIEGGAFGIPVTSGMAACFYALINLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKINQIAKKHKIVSICDNTVATPFLLQPFKHGVDVIVHSLSKYVSGQGTALGGAL
                     IERKDLNDLLKNNDRYKAFNTPDPSYHGLNLNTLDLPIFSIRVIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEAKDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGITKATIRLSIGLENSDDLIADLKQAIES"
     gene            complement(3908..6424)
                     /gene="flgE"
                     /locus_tag="SFZ04_000892"
     CDS             complement(3908..6424)
                     /gene="flgE"
                     /locus_tag="SFZ04_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG8065181.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTRYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLSVGTAKTPIYGLDSVHGFNKKDGTAKNENDTGITQ
                     FYTTSKNSVEVTEKGVDCAALFNGKGDGLNLRDGQGIWVSYADSKFSTDVPNGVNVFN
                     PNTQATQNGVIFWGDENNAVNLDITLNGVRIQNNSIKSLDQAIEYINTFTAPTDTREG
                     TGVKAVRKADGSGIEFINTNADGTTDNMKNIDLVVNQANTAGERHNLTWQANNNSFQA
                     ASRKQGANSVWIPGNNPVNGTERIQIVTAHKYVYSSTPVQLDPMYNPDGGPAFNQANI
                     NTPGTAENNYRNAVNGSLLNTTVRTFRTTEDLRELLQRDARYGVDYDGSGGFEADGSD
                     VNEGVKVTVGATGEFIISNPNVQSTPPNGIVQNNRRPHDISFNVTAYTDAKGKVSTNM
                     AFTNIFKGFDGVLTVGNSNRQSEQLFLSAFSAGLEIFDSLGSKHTIEVQFVKQSTTQD
                     GGNEWQMIIRVPEPAEINTTGEGPNNIVVGTARFNNDGSLANYSPKTINFSPNNGAAP
                     NQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTN
                     GKTFAVAKMAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGTGGRGEMKTSALEMS
                     NVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ"
     gene            complement(6628..7110)
                     /gene="ruvC"
                     /locus_tag="SFZ04_000893"
     CDS             complement(6628..7110)
                     /gene="ruvC"
                     /locus_tag="SFZ04_000893"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEG8065182.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            7206..8528
                     /gene="dnaA"
                     /locus_tag="SFZ04_000894"
     CDS             7206..8528
                     /gene="dnaA"
                     /locus_tag="SFZ04_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEG8065183.1"
                     /translation="MNPSQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAIIHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            8688..9755
                     /locus_tag="SFZ04_000895"
     CDS             8688..9755
                     /locus_tag="SFZ04_000895"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEG8065184.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELNFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            9784..12093
                     /gene="gyrB"
                     /locus_tag="SFZ04_000896"
     CDS             9784..12093
                     /gene="gyrB"
                     /locus_tag="SFZ04_000896"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEG8065185.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEANYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(12119..12460)
                     /locus_tag="SFZ04_000897"
     CDS             complement(12119..12460)
                     /locus_tag="SFZ04_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HEG8065186.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(12463..13701)
                     /locus_tag="SFZ04_000898"
     CDS             complement(12463..13701)
                     /locus_tag="SFZ04_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HEG8065187.1"
                     /translation="MKQNNQKEDRRNFLKNIGFGLLGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEINGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YISNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
     gene            13906..15213
                     /locus_tag="SFZ04_000899"
     CDS             13906..15213
                     /locus_tag="SFZ04_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HEG8065188.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKSREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT         5194 a         2445 c         2373 g         5258 t
ORIGIN      
        1 tagatctttt tatattatat attcttcaaa gattaaataa gaatttttta taaaatactt
       61 aatctttaca taaaaatatg ttattatttt acttaaatat tattttggca ctaccatatc
      121 gctacgacat tctatcaccg tatgcacatt tccacgcggg ttaaaatccc ccacaacttt
      181 aatccatttt ggttttaatt tatcttttaa agtattataa atttcattga tacttgcttc
      241 atgtgaaaca tttctataca taaaagtatt gatataaagt tttatcgcct taagctcaac
      301 cacaaattta ttaggcatat actcaagata aatcgtcgca aagtcaggat aacccgaacg
      361 cggacaacaa cacataaatt caggcaaagt gattttaatg atatagtcat ttttggcatc
      421 atttggccaa atttccatat tttctacatc aaattctttg atttcttttt caccataacg
      481 catgagcttt ccttattgaa aatttttaga aaattatata aaaaattact tttagagcaa
      541 ttgaaaaata aacattttta gcaaattgca taaaaaagac aaatattata ttaaataaag
      601 ctttttatac tagaataagg caaatctttc aaaaggaaaa aaatgagaaa atcaattgca
      661 attataggcg gtagcatcgc aggacttagc gcggctttat ttttcgcttc agctaaaaat
      721 gaagaacttg actttgatat cactgttttt gatgagggta aagcagattt aaaagcagca
      781 gcaatttaca atgttccttt tttcccaaaa ggtgcaaaag cagatgaaat ttacactcac
      841 ataaaagcac aaattgcttc tatgctcgaa gtaaaataca tcgattcaaa agtagtaagc
      901 ataagcggag aaaaaggaga ttttactgtt aatgatgagc aaggcttggg tataaaagca
      961 gattatatca tcgtagcaac aggggcaaac aaaagcgata tcaaagaact tgaagatttt
     1021 gtaataccgc atgagcttat accaaaacca aacaaatttt gcttcaaaca tcacgggaga
     1081 cagattatca aagaaggaat ttacgcagca ggacttgctt caggtgttac gactatggta
     1141 gcttgcgcga tgggaagtgc caatgaagca gcttgcgcga ttttaagcga tatcaaaggt
     1201 gcagtaagcg tatatcacga tacacctact acaagagttt aaatcatcaa agcacaaaag
     1261 gtgtgctttg atacacatca taattgagcc aatttgcaaa aatggtattt gcatttgaac
     1321 gccaattgta ttttatattg ccctttttat cataataatt tttagctttt tgtatgaaat
     1381 tatctcttac atattcttga tgtaaagtct ctttaaaata ttccaaatgc cctaaaataa
     1441 aaatattctt ttcatctctt aataaagccg aaccgatttt tttatttcta agcaaaattt
     1501 ttaatttccc ttgtttttgt agtgctaaaa tttgctcttc atccatgcta gaatgtcttg
     1561 aatgaggcat taaaaccttt tcatctaaat ttgttaaaag cagatcaggc gaaactttat
     1621 catgcttata gactccaaaa attttcttat ctaaagagat tttatccaca ccataaaagt
     1681 attttaaagc agccatggca ccccaacaaa tatacataga acttgttaca ttttgcttta
     1741 aaaaatcaaa aatttctagc aattcttccc agtaagcaac cttttcaaaa tccatttgtt
     1801 ccacaggagc tcctgtaaca atagcaccat caaatttatg ttttttaacc tcttcaagac
     1861 ccttgtaaaa tttttccaaa tgagtaaaag gagtattttt acccacatag ctagtcgtgg
     1921 ctaaaagtgt gatatttact tgcaaaggag aatttgcaag taagcttaga atttgatttt
     1981 ctgtttcaat tttttttgac ataagattga caatcaaaat ttcttgcggc ctgatatctt
     2041 gatgctttgc tctccttgat cccatgataa aagcatgctc ttttaaaagc tcataagcgg
     2101 gtatattttc tggaataatc agtggcattt tttctccttt atttaataaa ccttatttat
     2161 gataaagcat ggtggaattt ttatctcatt cactcaatgc aaacacactt ttaactttct
     2221 atagcttgtt ttaaatccgc tatcaaatca tcgctatttt caagtcctat gcttaagcgt
     2281 atagtagctt tcgtaatgcc tgctttttgg agttcttctt cgcttagttg cgaatgagta
     2341 gtagaagcag gatggatgat caaagacttg ctatcaccca aatttgcagc aagtaagaaa
     2401 agttgagttt tatcacaaat tcttctagca tgctcataat ctttagcttc aaagcttaaa
     2461 agcccgctag caaaattttt atcaaaatat tttttaaata aattatgata agcattactt
     2521 gctaaagtag gataatttac gcccttgata tcaggatgag aatttaaaaa attcgcaact
     2581 ttttcagcat tttgactgtg tttttctata cgcactgcca aggtttcaag tccttgtaaa
     2641 agtaaccaag cattttgagg tgctaagcta gctcctagat ctctaagcca agtgatgatg
     2701 actctaatac taaaaatcgg caaatcaagt gtatttaaat tcagtccatg ataacttgga
     2761 tcaggagtgt taaaagcttt atatctatcg ttatttttaa gcaagtcgtt taaatctttt
     2821 ctttctataa gtgctccacc caaagcagtg ccttgaccgc ttacatattt acttaaacta
     2881 tgcacgatta catccacgcc atgtttaaaa ggttggagta agaaaggagt agcaacggta
     2941 ttatcacaaa tgctaacgat tttatgtttt tttgctattt ggtttatttt ttctatatca
     3001 gctatggcaa tttgaggatt tgaaagactt tcgaaaaaaa tcgcttttgt gttttgatct
     3061 ataacttttt ccaagctatc taaatcatcg atatcaaatt ccctagcttc tatgccaaaa
     3121 tttttaagtg tgtgagaaat taaagtttga gtcccaccat aaattttgtt cgaatacgcg
     3181 acattatctc ccgaacttgc taaattgata agagcataaa aacaagctgc cataccgcta
     3241 gtaacaggaa ttccaaaagc ccctccttcg atattagcaa gtctttgtcc taaaacatcg
     3301 cttgtaggat tgctaagtct tgagtaaata ttgccaagtt cttgaagatt aaaccttgct
     3361 gcagcttgat ccaaattttc aaaattatac gcagtgtttt gatatatagg cacactaata
     3421 cttctttgag tatcaaaatt ataagctccg tgtaatgcta aagtttcttt attgaaattc
     3481 attttttatc cttattgtgt caatgaaaaa atgttaaaaa gctttttatc ggctttaaat
     3541 taggctattt gaaaatgtaa atttatagaa tatgagtata tacgagtaga ttaagcgtgc
     3601 caagcacgca tacagaaaga agaaagcatt aagttaaaac taatataaga cattttttct
     3661 cctttctaaa aaattattga ttattctatc tttaaaaaat aaaattaaaa ttaaatttta
     3721 aaaaatttat atcacattgc ttaaaatttt attgcaactc acccctagca agagtgagtt
     3781 agcaataaat tgaaggcagt tcaagcctaa gcctagtatt acaagactac caagataggc
     3841 ttgtaaagca aggcttgctc cctttaaggg agcaaaaaac aatattttat agaatactaa
     3901 gcttaaatta ttgtttaagc tggattagag tttgaagcat ttgatcactc gttgaaatgg
     3961 tttttgagtt tgcttgataa cctctttgaa tgatgataag ctctgttaaa gaacgactta
     4021 aatccacatt tgacatttca agagctgagg ttttcatctc accacgacct cctgttcctg
     4081 cttcacctac tactatagcc ccactatttg cagtgacttt aaaaagattt ccgccgattt
     4141 cttcaaggcc tgagttattt gctactgaag ccatcgccat ttttgccaca gcgaaggttt
     4201 taccatttgt aaattcacct aagatatttc ctttatcatc cacacggata gcatcaggct
     4261 ttaagttacc tgaagtataa ccatcagttg cttgtcctgt tagagttgaa gcagaatttg
     4321 agcttacaag gccgtcattg cttccacttg ttccaaagct aagttttatt tgttgatttg
     4381 gtgcggcacc attgtttggt gagaaattta tagtttttgg actataattt gccaaagagc
     4441 catcattgtt aaatcttgcc gttcctacga cgatattgtt tggtccttcg cctgtagtgt
     4501 taatctcagc aggttctggc acacggatga tcatctgcca ttcattacca ccatcttgag
     4561 ttgtgctttg ttttacaaat tgcacttcta tagtgtgttt tgatcctaaa gagtcaaata
     4621 tctcaagtcc agcagaaaat gcacttaaga aaagttgttc gctttggcga tttgaatttc
     4681 ctactgttaa aactccatca aaacctttaa atatatttgt aaatgccata tttgtgctta
     4741 ctttgccttt tgcatctgta taagctgtaa cattaaaact tatatcatga ggtcttctat
     4801 tattttgaac tataccattt ggaggagttg attgaacatt tggatttgat attataaatt
     4861 cacctgttgc accaactgtt acttttacac cttcattaac atcactacca tcagcttcaa
     4921 atccaccact tccatcataa tcaacaccat atctagcatc tctttgtaaa agttctctta
     4981 aatcttcagt agttctaaaa gttcttactg ttgtatttaa taaagaacca ttaacggcat
     5041 tacgatagtt attttcagct gttccaggtg tgtttatatt ggcttgatta aaagcaggac
     5101 caccatctgg attatacata ggatctagtt gaactggagt tgaactgtat acatatttat
     5161 gcgctgttac tatttgtatt ctttcagttc catttacagg attatttcca ggtatccata
     5221 ctgagtttgc accttgtttt ctagatgcag cttgaaaact attattattt gcttgccatg
     5281 taagattgtg tctttctccg gctgtatttg cttgatttac aaccaagtct atatttttca
     5341 tattatctgt agtgccatca gcattagtat ttataaattc tataccgcta ccatcggctt
     5401 ttcttactgc ttttactccc gttccttctc ttgtatctgt aggagctgta aaagtattta
     5461 tgtattctat agcttgatct aaacttttta tagaattatt ttgtattcta actccattta
     5521 atgttatatc aagatttaca gcattgtttt catctcccca aaatataaca ccattttgag
     5581 tagcttgagt atttggatta aatacattta caccatttgg aacatctgtg ctaaatttag
     5641 aatctgcata gcttacccat ataccttgtc catctcttaa atttaaacca tcgcctttac
     5701 cattaaataa agcagcacag tcaacccctt tttctgtaac ttctactgaa ttttttgaag
     5761 ttgtgtaaaa ttgagttata cctgtatcat tttcattttt tgcagttcca tcttttttgt
     5821 taaaaccatg aacagaatca agtccatata taggagtttt tgctgttcct acgcttaaac
     5881 cactatttaa attcgctttg atggctactt cggttgattt tgctgcaggg atatgcatac
     5941 cgggatcgat aaaaatattt tgcggagttc ttgagctatc tatactttga gtatcccagt
     6001 tgatattcca cccttggaca acaaaacctg cattattaac aaaatttcca taagcatcta
     6061 gtttaaaatc cccgctcctt gtaagatagc gagtaagccc cccatcatca ctcaccataa
     6121 aaaaaccatc accatttata gccacatcag tgtttttatc tgtggtttga actgaacctt
     6181 gagaatgaat tctagttgta gaacttactg aaacgccaag accgatttga agtggattag
     6241 atccacctct tccatcagtt ggagctgtag cgattttcac agtttggcta aacatagtcc
     6301 caaaatctgc acgggagtat ttaaaaccag tggtattaac atttgaaatg ttattacctt
     6361 caacatccat cgcaacttga tgtgcttgta gtccgcttac gccagaccaa agtgatctca
     6421 tcatcttaaa tcctttataa aatattgctt taaaaaattt aacgctttgg ctttaaaaaa
     6481 cttttgcgtt tatgtgaagt ttacaagcaa gttctgttcc aacttttgaa attttttatg
     6541 aattttttaa aaatttatag aaaaaattta aaggtatttt gggagtttat gaagctttgg
     6601 tcttttgtgt aatgaaaatt accaaaatca caccctaact cttaaatttg ctgcatgggt
     6661 taaagccact gcgatagcat ctgtgatatc caaaggcttg atatctttac taagtcctaa
     6721 aagccttttt accataaaag caacttgttc tttagttgct ttggcttttc ctgtaacggc
     6781 ttttttcact tgtaagggag tgtattctgc aaagtctcca tgaatttgaa gaatttttaa
     6841 agatagggct ccgcgaaatt gtgcgagttt taaaacggtt tttggattgt aagcaaaaaa
     6901 gatatcttct atagccacct catcaaaaga atgattttta aaaatcaagt ccaaaccctc
     6961 gcaaagctct gtgatttgat actgtaaggt acttggcttt atctttataa gtcctgcttc
     7021 tatgagaatg ttttttcctt tgtcagcttc tatgatagca taaccgcaat ttctcgaacc
     7081 tggatctata cctaaaattt tcaaattcat accttttgaa aaataaaata caaaagcgga
     7141 ttttaacctt tttttataaa atttaagata aaatttatac attatgcaaa atttaaagag
     7201 agattatgaa tccaagccaa atacttgaaa atttaaaaaa agaattaaac gaaaacgaat
     7261 acgaaaacta tttatcaaat ttaaaattca acgaaaaaca aagcaaagca gatcttttag
     7321 tttttaacgc tccaaatgaa ctcatggcta aattcataca aacaaaatac ggcaaaaaaa
     7381 tcgcgcattt ttatgaagtg caaagtggaa ataaagccat cataaacata caagcacaaa
     7441 gtgctaaaca aagcaacaaa agcacaaaaa tcgacatagc tcatataaag gcacaaagca
     7501 cgattttaaa tccttctttt acttttgaaa gttttgttgt gggggattct aacaaatacg
     7561 cttatggagc atgtaaagct ataatacata aagacaagct tggaaaactt tataatccta
     7621 tctttgttta tgggcctaca ggacttggaa aaacacattt acttcaagca gttggaaatg
     7681 caagcttaga aatgggaaaa aaagtaattt atgctaccag tgaaaatttt atcaatgatt
     7741 ttacttcaaa tttaaaaaat ggctctttag ataaatttca tgaaaaatat agaaactgcg
     7801 atgttttact tatagatgat gtgcagtttt taggaaaaac cgataaaatt caagaagaat
     7861 ttttctttat atttaatgaa atcaaaaata acgatggaca aatcatcatg acttcagaca
     7921 atccacccaa catgctaaaa ggtataaccg aacgcttaaa aagtcgtttt gcacatggga
     7981 tcatagctga tataactcca cctcaactag atacaaaaat agccatcata agaaaaaaat
     8041 gtgaatttaa cgatatcaat ctttctaatg atatcataaa ctatatcgct acttctttag
     8101 gggataatat aagagaaatc gaaggtatca tcataagttt aaatgcttat gcaaccatac
     8161 taggacaaga aatcacactc gaacttgcca aaagtgtgat gaaagatcat atcaaagaaa
     8221 agaaagaaaa tatcactata gatgacattt tatctttggt atgtaaagaa tttaacatca
     8281 aaccaagcga tgtgaaatcc aataaaaaaa ctcaaaatat agtcacagca agacgcattg
     8341 tgatttacct agctagggca cttacggctt tgactatgcc acaacttgcg aattattttg
     8401 aaatgaaaga tcatacagct atttcacata atgttaaaaa aatcacagaa atgatagaaa
     8461 atgatggttc tttaaaagca aaaatcgaag aacttaaaaa caaaattctt gttaaaagtc
     8521 aaagttaagt gaaaggatgt gaaaaataaa ttctagagtg tgaaaaaaag aaattaagca
     8581 aagtatgata aaatacaaat ttgattattt tgctttgaag aatttcacaa tttcaacaag
     8641 cttattatta caacgaattt aaaattaaaa taaaccaagg agaaaaaatg aagttaagta
     8701 tcaataaaaa tactttagaa tctgcagtga ttttatgtaa tgcttatgta gaaaaaaaag
     8761 actcaagcac cattacttct catctttttt ttcatgctga tgaagataaa cttcttatta
     8821 gagctagtga ttatgaaata ggtatcaact ataaaataaa aaaaatccgc gtagaatcaa
     8881 gtggttttgc tactgcaaat gcaaaaagta ttgcagatgt tattaaaagc ttaaacaatg
     8941 aagaagttgt tttagaaacc attgataatt tcttatttat aagacaaaaa agcacaaaat
     9001 acaaacttcc tatgtttaat catgaagatt ttccaaattt tccaaataca gaaggaaaaa
     9061 accaatttga cattgattca agtgacttaa gtcgttctct taaaaagata ttaccaagta
     9121 ttgatacaaa caacccaaaa tactccttaa atggtgcatt tttagatata aaaacagata
     9181 aaattaactt cgtaggaact gatacaaaac gccttgcaat ctatacttta gaaaaagcaa
     9241 ataatcaaga atttagtttt agtatcccta aaaaagctat tatggaaatg caaaaacttt
     9301 tctatgaaaa aatagaaatt ttttatgatc aaaatatgct tatcgctaaa aatgaaaact
     9361 ttgaattctt tacaaaactt atcaatgata aatttccaga ttatgaaaaa gttataccaa
     9421 aaactttcaa acaagaactc aacttttcaa ctgaagattt tatagatagt cttaaaaaaa
     9481 tcagcgttgt aactgaaaaa atgaaacttc attttaacaa agataaaatc atctttgaag
     9541 gtataagttt agacaatatg gaagcaaaaa cagagcttga aattcaaaca ggagtaagtg
     9601 aagaatttaa tcttactata aaaatcaaat atttacttga tttcttaact tctatagaag
     9661 aagaaaaatt cactttaagt gtaaatgaac ctaattcagc atttatagtc aaatcccaag
     9721 gactatcaat gattattatg cctatgattt tgtaataaaa caagtaaaag ataaaggaaa
     9781 aatatgcaag aaaattacgg tgcgagtaat attaaagtcc taaaaggcct agaagctgtt
     9841 agaaaacgcc caggtatgta tataggagat acaaacatag gcggacttca tcatatgatt
     9901 tatgaagttg tggataattc tatcgatgaa gctatggcag gacattgtga tactatagat
     9961 gtagaaatca ctactgaagg aagctgtata gttagtgata atggtcgtgg tattcctgtt
    10021 gatatgcacc caactgaaaa tatgccaact ttaactgttg ttttaactgt cctacatgca
    10081 gggggaaaat tcgataaaga tacttacaaa gtttcaggcg gtttgcacgg tgttggggtt
    10141 tcagttgtaa atgcactctc taaaaaactt gtagctacag ttgaaagaaa tggagaaatt
    10201 tatcgtcaag aattttcaga aggtaaagtt atcagtgaat ttggtgtgat aggaaaaagt
    10261 aaaaaaacag gaacaactat agaattttgg cctgatgatc aaatttttga agtgactgaa
    10321 tttgattatg aaattttggc taaaagattt cgtgaacttg catacttaaa tccaaaaatc
    10381 actataaatt ttaaagataa ccgcgtaggc aaacatgaaa gttttcactt tgaaggtgga
    10441 atttctcagt ttgttacaga cttaaataaa aaagaagctt taactaaagc aattttcttt
    10501 agcgtagatg aagaagatgt aaatgttgaa gtagctttgc tttacaatga tacttatagt
    10561 gaaaatttac tctcttttgt aaataatatc aaaactccag atggtggaac acacgaagct
    10621 ggttttagaa tgggtttaac tcgtgtgata agtaactata tagaagcaaa tgcaagtgct
    10681 agagaaaagg ataataaaat cacgggtgat gatgtgcgtg aaggtttgat cgctattgtg
    10741 agtgtaaagg tgcctgaacc acaatttgaa ggacaaacca aaggaaaact tggttcaact
    10801 tatgtgcgtc ctatagtttc aaaagcaagt tttgaatatt tgactaaata ttttgaagaa
    10861 aatcctatcg aagctaaagc tataatgaat aaagctttaa tggcagctag aggaagagaa
    10921 gcagcgaaaa aagctagaga attaacgcgt aaaaaagaaa gtttaagcgt aggaacttta
    10981 ccagggaaat tagctgattg tcaaagtaaa gatccaagtg aaagtgaaat ttatcttgtg
    11041 gaaggggatt ctgcaggagg ttctgcaaaa caaggtagag aaagatcttt tcaagctata
    11101 ctgcctttgc gtggtaaaat tttaaatgtt gaaaaagcaa gattagataa aattttaaaa
    11161 tctgagcaaa ttcaaaatat gattaccgct tttggctgtg gtataggtga agattttgat
    11221 ctttcaaaac ttagatatca taaaatcatc atcatgacag atgcggatgt tgatggatca
    11281 catatacaaa ccttgctttt aactttcttc ttccgtttta tgaatgaact tgtagcaaat
    11341 ggacatattt atctagcaca accaccttta tatctttata aaaaagctaa aaagcaaatt
    11401 tatttaaagg atgaaaaagc tttgagcgaa tacctgatag aaacaggaat agaaggttta
    11461 aactatgaag gtataggaat gaatgattta aaagattatt taaaaatcgt tgcagcttat
    11521 cgtgcgattt taaaagatct tgaaaagcgt tttaatgtga tttctgtgat acgctatatg
    11581 atagaaaatt caaatttagt taaaggaaat aatgaagaat tatttagtgt aatcaaacaa
    11641 tttttagaaa cacaaggaca caatatctta aatcattata tcaacgaaaa tgaaattcga
    11701 gctttcgttc aaactcaaaa tggcttagaa gaacttgtga tcaatgaaga acttttcact
    11761 catccactat atgaagaagc aaattatatt tttgataaga ttaaagatag aggcttggaa
    11821 tttgataaag atattttaga agttcttgaa gatgttgaaa ccaatgctaa aaaaggtgct
    11881 actatacaac gctataaagg tttaggggaa atgaatcctg agcaactttg ggaaactaca
    11941 atggatccaa gcgtaagaag acttttaaaa atcactattg aagatgcaca aagtgcaaat
    12001 gataccttta atctctttat gggtgatgag gttgaaccaa gacgcgatta tatccaagca
    12061 cacgctaaag atgtaaagca tttggatgtg taaatttatc attgaagaaa tcatttcttc
    12121 aatgagtttt gttttgtaag agtatagcta gaggaattct tcttcttgta tcgtattttt
    12181 ctccataata tttttcaaga taatttaaaa ttttttcttc atcttcaggt tctatttccc
    12241 aaagtccttc actatcttgc atccatctta tagctgctaa ccaagctttt ctacttgcat
    12301 gcatattagt aatgagattg gatccatgac aagctaaaca atttgcttcc actaaaggtg
    12361 aatcaggatc gataatcaat cctgtatcag ggttaatttc aagattttga gcccaacttg
    12421 cacttaaaaa caatgctaag atcaatataa tttttttcat acttaaactc cataaacatt
    12481 aactctatgg catgcattat tgatatatcc tcctggattc cactgtgcta aaaccatagg
    12541 ttgactgtta ccttgactat cgatagctct tgcccaaatt tcataatatc cttttgttgg
    12601 tattgatatt tgagcactcc atttttgcca tgctaatcta tttaatggtt tttctacctt
    12661 tgctttagtc catgttacgc cataatcatt gcttatataa acttcactaa cttcaagttc
    12721 tccagcccaa gctttacctc taacttcaaa ttttttattt gcttttattt cagaaccatt
    12781 tttgatatta gtaattacag atcttatagg cattgattct atgattttca tctcgccttt
    12841 atagttaaaa tctcctggtt ttaccggatt tacaggaact ttataagaac cttccatttt
    12901 ttcaccatca tgaattttat ttcttactga aattttataa agccatttac cgcttgtact
    12961 tgcagggtaa ccaccacaaa caagtctaag tggatagcca ttgactaaag gaatatcttt
    13021 gccttcataa gcccaagcta ttagagtttc atcttgtaaa gctttagaaa taggaactcc
    13081 tctactaata ggtgaagttt cttcaccatt taattttgta tctatgccat aatatccgat
    13141 ataaaccgca tcatttttga tgccacaatc ttttaaaata tcttttaaac gcactcctgt
    13201 ccatctaccg caagctactg caccataacc ccattgagtt ccttttgtgc taggtataac
    13261 ttcggatcta ccatttccac cgcattcaac tgttaaggca taagtatagg ttttaaattt
    13321 cttttttaaa tcttctatgg tgtaagattt tttattgata atgctttctc cattgatttc
    13381 taaagtccaa cctttgtgaa gtctttcttt tatcgtttct aggcttggtg gtaagccatt
    13441 atttctaaca aagaaatttt caggtttggt aaaatcagaa tcaagagcat aaatttcagt
    13501 ttctgctgtt aatggttttt cgccatggta gataagatct tttttacctt ctattttaaa
    13561 atcaggcaat tcttttgcca aagccttact tcctaaaaaa ttctcaaaag aaaaatttga
    13621 caatacactg atgccaagca aaccaaatcc tatatttttt aagaaatttc tgcgatcttc
    13681 tttttgattg ttttgtttca ttgaaatatc cttatatttt tatgattttt tttattttat
    13741 tataaatttt aggaatttaa ataattgatt atattaatct ttttgattaa aaaaaataat
    13801 tatttttata attttgcata ttaaaataaa atcatcatat gttcgagttt tattacattt
    13861 taactaagtt ttttctacaa ttaaattttt aaaattattt aaggaataat tttgacttta
    13921 cttactaatc ctattattat cagtgttgtt ttgatgactt tactttgttt gtttcgtttt
    13981 aatgtacttt tgagtctttt gatctcagct cttgttgcag gtgtattttc tcatcttgaa
    14041 ctcgtagata ctatgaatat acttataagc ggaatgaaag aaaatttaaa aacagctctt
    14101 agctatatac ttttaggggc cattgccgca gcgatttcaa agacaaattt aactgcatat
    14161 ttgattaaga tagtaagtca ttttatatct cataaaaaat atttattgct tttgtctata
    14221 gctttgattt cttgtttttc tcaaaattta attcctattc atgtggcttt tatacctttg
    14281 ttgattccac ctcttttaag tctttttaat aaacttaaaa tcgatcgtag agcggttgct
    14341 tgtgctttaa cttttggact tactacgcct tatatggttt tgccagtagg ctttggactt
    14401 acttttcaag atcttttaaa agataattta aatgcaaata atgtaagtgt atctttaaat
    14461 gatgttacaa atactatgta tttcgctgct atttgtatga tagcaggact ttttctagcg
    14521 ctttttgtgt tttatcgtaa gtcaagagag tatcaagaag tagaaattgc taaagtggat
    14581 ttagaaaatc ttgaaatgac gcgtaaagaa tggggtgttt tagctgggct tgttttaact
    14641 ttaattttgc aaattttgac tatgaattta cctttatcag ggcttttggg ttttgtttta
    14701 atggttattt tgggtggagt tgaattttca aaagtcaatg aagtttttga tgatgggctt
    14761 aaaatgatgg gttttatagc ttttgttatc cttgttgctg caggatatgg agaagtttta
    14821 aaagaaagtg gatcagtagt agatcttgta aattcagtcg ttccttggat ggagcaaagt
    14881 aaatttttag cagtattttt catgctttta ataggactta tcatcactat gggtataggt
    14941 acttcttttg gaactatacc tatcatagct acgctttttt gtcctatttg tttggaactt
    15001 ggttttagta cagcacttat tatatttatc ttaggagtag caggagcttt aggagatgca
    15061 ggaagtccag ccagtgaaac aaccatggga actactgtag gattaaatgc tgataaacaa
    15121 cacgatcaca ttaaagatac ttgcatacca acttttattt tttataatgg tccattattg
    15181 attttgggta gtattatcgc catgttttta taatttttgc aaatctatca aaatattttt
    15241 taatttattt atttttaaga taaaaattat
//
LOCUS       DARGBD010000036        13982 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.036, whole genome shotgun sequence.
ACCESSION   DARGBD010000036 DARGBD010000000
VERSION     DARGBD010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13982
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.036"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..81)
                     /locus_tag="SFZ04_000900"
     CDS             complement(<1..81)
                     /locus_tag="SFZ04_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEG8065189.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYK"
     gene            164..721
                     /locus_tag="SFZ04_000901"
     CDS             164..721
                     /locus_tag="SFZ04_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8065190.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISVKKENVVLNFNDEGKAILFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            721..1587
                     /gene="ftsY"
                     /locus_tag="SFZ04_000902"
     CDS             721..1587
                     /gene="ftsY"
                     /locus_tag="SFZ04_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEG8065191.1"
                     /translation="MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            1587..2927
                     /gene="radA"
                     /locus_tag="SFZ04_000903"
     CDS             1587..2927
                     /gene="radA"
                     /locus_tag="SFZ04_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEG8065192.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            2996..3676
                     /locus_tag="SFZ04_000904"
     CDS             2996..3676
                     /locus_tag="SFZ04_000904"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEG8065193.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHSP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3673..3864
                     /locus_tag="SFZ04_000905"
     CDS             3673..3864
                     /locus_tag="SFZ04_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065194.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(3886..4734)
                     /gene="metF"
                     /locus_tag="SFZ04_000906"
     CDS             complement(3886..4734)
                     /gene="metF"
                     /locus_tag="SFZ04_000906"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEG8065195.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEIASLIQEEYQIPSIVHLPCIHSSKEKIIQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4744..7008)
                     /gene="metE"
                     /locus_tag="SFZ04_000907"
     CDS             complement(4744..7008)
                     /gene="metE"
                     /locus_tag="SFZ04_000907"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEG8065196.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     KYGFAKDKILFAGLINGKNIYTNDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSNYLKLFSFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRIKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(7020..7790)
                     /locus_tag="SFZ04_000908"
     CDS             complement(7020..7790)
                     /locus_tag="SFZ04_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG8065197.1"
                     /translation="MTLFTKAFCVATLFTGFAWADEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKYKEFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLNDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7801..8793)
                     /locus_tag="SFZ04_000909"
     CDS             complement(7801..8793)
                     /locus_tag="SFZ04_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HEG8065198.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYIEQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPSNA
                     FDKLYGKNSYEHCKIIHYPKSSKNTTQGVGSHKDGGLITFVFQEKQSGLEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            complement(9106..9600)
                     /gene="luxS"
                     /locus_tag="SFZ04_000910"
     CDS             complement(9106..9600)
                     /gene="luxS"
                     /locus_tag="SFZ04_000910"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEG8065199.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            9715..11133
                     /gene="gatB"
                     /locus_tag="SFZ04_000911"
     CDS             9715..11133
                     /gene="gatB"
                     /locus_tag="SFZ04_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEG8065200.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSIFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKARFIDELGIKESDAEVLISSLEMSRFFKSLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKEKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            11130..12026
                     /locus_tag="SFZ04_000912"
     CDS             11130..12026
                     /locus_tag="SFZ04_000912"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEG8065201.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGTKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILAELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQNLLKQND"
     gene            12036..13214
                     /locus_tag="SFZ04_000913"
     CDS             12036..13214
                     /locus_tag="SFZ04_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG8065202.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDTNGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(13222..>13982)
                     /locus_tag="SFZ04_000914"
     CDS             complement(13222..>13982)
                     /locus_tag="SFZ04_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEG8065203.1"
                     /translation="YRNKMKEFKEQEKDIDIYSILKTHMPIIACIAAAIISAMFLFKG
                     LNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIVKKTELNKTTDRIFSWFQIFTASSF
                     AFSHGANDIANAIGPFAAILDVLKNGTINATSPVPFAALAMFGVALVVGLWFLGKEVI
                     TTVGSKLATIRPTTGFSAELGASIVILLATQFGIPVSSTHILIGAILGIGVYNKNANW
                     IMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI"
BASE COUNT         4627 a         1976 c         2449 g         4930 t
ORIGIN      
        1 tttataatct tgtttgaaat ttagttttga atgtttgaaa aggcgtattt tttgcaatgc
       61 tctaaaatct gttttttcca ttaatatgtc tttaaaaaaa tattatctta tgtatgttat
      121 aattttagca tttttataaa gaagaataaa ggattgataa ataatgaaga ttaaaaaaat
      181 acttttacta gtggcaatat cttgtttgtt tgttgcttgt agcaatgata aagaaaaaca
      241 gcaaaatgat gtaaatttaa gcaccgaggc aagtataaat caaagtgatg atatgaattt
      301 taaacttaat ttgattgatg gaggatcaat ttcagttaaa aaagaaaatg tcgttttaaa
      361 tttcaacgat gaaggtaagg caattttgtt tgtatttttt accacttggt gtaccccttg
      421 cattgctgaa atccctcatc ttaataaatt acaagaaaag tataataatg attttaatat
      481 agttggggtt ttattagaag ataaatctaa cgatgagatt caaaaattta tagaacagca
      541 taaaatatct tataaagtcg ctaatggtga aaataactat cttttagcta aagctttagg
      601 tggggtaaat ggaattccta ccatgtttct ttacaataag cattctaaat tgattaatca
      661 gtatttaggg cttattcctg aagaaatgct agaaatcgat atacaaaagg ctatacttta
      721 atgtttaatt tttttaaaaa aggacttgca aaaactcttg aaaatattgt tgggattaaa
      781 ggagagaata aaaagataac caaagatttg cttgaagaaa ttttgcttga agcagatgta
      841 agttatgaaa tagttgaaga gataatttat tatttaccac ctcaaaatga agtaaaaaaa
      901 gaagatttaa agcgtgttat gggttcttat tttctttatg aaaaaaaaga aaccaatcaa
      961 gaaaaacctt ttgtagagct tattttagga gtaaatggag caggaaaaac aacaagtatt
     1021 gccaaacttg cttatttata taaaaaccaa aatcaaaaag tgattttagg agcgtgtgat
     1081 acttttagag caggtgcgat tgaacaatta aaactttggg cgcaaaaagt ggatgtagat
     1141 atagttttaa ctgcacaagg gcatgatcct tcagcggttg cttttgatac catttctaaa
     1201 gcaaaagcaa aggattttga tagagttatt atcgatacag cagggcgttt gcaaaatcaa
     1261 aaaaatttag cccatgagct tgaaaaaatt gtgagaattt caaacaaagc tttagaaggt
     1321 gcaccccata gaaaaatttt agttttagat ggaacacagg gaaatgctgg aattttacaa
     1381 gctaaagctt ttaatgagct tgtaaaactt gatggtgtga ttatcacaaa gcttgatggg
     1441 acagctaaag ggggtgcact ttttagtata gcaagagagc ttgagcttcc tattttttat
     1501 gtaggcgtgg gtgagcaaat gacggatttg caagaattta atgcaagtgc ttatttagat
     1561 actttattag atcctatttt tgaataatgg caaaaaataa agcacttttt gaatgtcaag
     1621 cttgtggaaa tcaacaaagc aaatggcttg gaaaatgtcc tgattgtgga gcttgggata
     1681 gttttgtaga attaaaagct gagcaaatta aagttttaaa agagcttgcg caagttagta
     1741 tgaaaacaag tgaagctgtt tgtattgaag atgtggaatt agaacatttt acaagataca
     1801 gcacagatga taatgagctt gatttggttt taggcggagg gcttgttgaa ggttctttag
     1861 tgcttatagg cggaagtcca ggtgtgggaa aatctacgct tttgttaaaa attgcttcaa
     1921 atttagccaa acagggtaaa aaagtgcttt atgtcagtgg cgaagaaagt aaagctcaga
     1981 ttaaattaag agctgatcgc cttgaggcta atactccgaa tttattttta cttactgaac
     2041 tttgccttga aaatatttta gaagaattac ataaaaagga ttatagtatt cttatcattg
     2101 attctataca aactctatat tcaaataaag tcacttcagc agcaggaagc atcactcagg
     2161 tgcgtgagat tacttttgaa cttatgcgtg ttagcaaggc ttataatatc agtactttta
     2221 tcatagggca tattactaaa gaaggtgcta tagcagggcc tagggttctt gagcatatgg
     2281 tagatgtggt gctttatttt gaaggagatg ccactaaaga aatcagactt ttaagaggct
     2341 ttaaaaatcg ttttggtgga acgaatgaag taggtatttt tgagatgact gctaagggtt
     2401 tgattagcgc aaaagattta gcaaatcgtt tttttactcg tggaaaggct atttcaggaa
     2461 gtgctttagg tgttgtgatg gaaggatctc gtgccttggt tttagaagtt caagctttag
     2521 tgtgtgaaag ttcttatcca aaacgcagcg ctacaggata tgaaaaaaat cgcttagata
     2581 tgcttttggc tttgcttgaa agaaaacttg aaattccttt agggcattat gatgtatttg
     2641 taaatattag cggcggagta aaagtaagtg aaactgctgc ggatttggct gtggttgcag
     2701 ctattatttc aagttttaaa aatcgccctt tgagcaaaga tagtattttt ataggggagc
     2761 ttagtttaaa tggagaaatt agagaggttt ttagccttga tacgcgttta aaagaagcta
     2821 aaatgcaaaa atttaaaaat gccattgttc cttctaagcc tttggaagat atagggctta
     2881 agtgttttgt tgctaaagaa ctttcacaag ttttagaatg gatgtaaatt ttcattaaaa
     2941 tataagtaag attttgctaa aattccgagt ttagaataaa atttttgagg aaaccatgaa
     3001 agatttattt ttatttagct ctttgcttga tgcaagtcat actttttctt atttttttca
     3061 cataggtttg gtagctttaa ttgctgttat agtggctatg atggctactc gttctatgca
     3121 acttgttcca cgcggtatgc aaaatttagg cgaggctttt ttagagggag ttttatctat
     3181 gggtagagat accatgggaa gtgaaaaagg tgcaagaaaa tatcttcctt tggttgcaac
     3241 tttggggatt atagtgtttt ttagtaatat tataggcata atacctggtt ttcactctcc
     3301 aactgcaagt ttaaatttga ctttgtcctt ggctattata gtttttgtat attatcattt
     3361 tgagggtatt agggcgcaag gttttgtaaa gtattttgct catttcatgg gacctattaa
     3421 acttttagct cctttgatgt ttcctataga gatagtctct catctttctc gtgtggtttc
     3481 tttgtccttc cgtttgtttg gaaatattaa aggtgacgat ttatttttga tggtaatttt
     3541 agctttagtt ccttatatag ctccacttcc tgcttatgtg cttttaactt ttatggcatt
     3601 tttacaagct tttattttta tgattttaac ttatgtatat ttagcgggtg caactgttgt
     3661 tgaggaaggt cattgatcta tattttagaa tttttcaaag gtgcatcttt agctttaatg
     3721 ctttttggtg cacttttctt cttttttaaa tataattctt ttttctatct ttgcttgggt
     3781 attataccag gtttgctttt atctttaatt tttgttttac ttatagaaaa ccataagcta
     3841 aaaaatgaaa ataagttaag ataaaagcaa aaaatagttt attttctaag catgaagctc
     3901 ttctttaagc aaatgcttta cagcttcata aattttaata gccgctttgg atttattcat
     3961 agtataaaga tgaattccat ctacaccact tgtgattaaa tcgacaattt gatcgcaagc
     4021 atacgcgata cctgcatctt ctaaagccaa agtattattt tcatattttt ctaaaatttt
     4081 aacaaattta ggagggattt tagctccgca aagttgagaa atttttaaaa cctgtctttt
     4141 gttagtaata ggcataatac ctgcgtaaat aggtatgtca atacctgcta aagcacaatt
     4201 ttgtttaaaa gtataaaaat cttcattatc gtaaaaaagt tgagtaatga gcttatctgt
     4261 tcctgcattt accttagttt taagatggtg tatatcctcg atgaaatttt tagattcatt
     4321 atgtttttcg ggatagcatg cggcataaat ttcaaagtat tcttgttttt ttataaaaga
     4381 aattaaatca ctagcataag aaaaatcttt gcttttttct aaattctcac atatatcgcc
     4441 tcttagggca agaatttgat taagattttt ttctttgcat ttttgaagta tctgaatgat
     4501 tttttcttta ctagaatgga tgcaaggtaa atgtactatg ctaggaattt gatattcttc
     4561 ctggattaag cttgcaattt ctaaagtgtt ttgtgagtta atagagcctc cagctccaaa
     4621 ggttacgctg ataaaattag ggcttaattg ccctaaatca tctaagatag catgaagatt
     4681 tttgatattt tcatcctttc ttggtggaaa aacttcaaaa gaaaaactac acatgaaaac
     4741 tccttataat tgttctcgta ttttttgcgt agccgtaact aaatttttaa gagaggctat
     4801 aacttcttca taggctcttg ttttaagtcc gcagtctgga ttgatccaaa tttgctcctt
     4861 gggtaatttg tttaaaattt tttctatagt taaacttaat tcttctacgc ttggaactct
     4921 agggctatgt atatcataaa ctcctggtcc cacctcagtt ttaaaacgaa tagcttttag
     4981 ggtatctaaa agacttaagt ttgatcttga agcttcaaaa gaaatcacat cagcatccat
     5041 agcgtcaatt tcttttaaga tatcgctaaa ttcactataa cacatatgag tgtgaatttg
     5101 agttttagct tttaccccac tatgcacaag attaaaagca ggaatagccc aatctaaata
     5161 ctcactatgc caatcacttt tccttaaagg cagtttttca cgcaaagccg cttcatcaat
     5221 ttgtatgatt tttatacctg cattttcaag atctaatact tcatctctta tagctaaggc
     5281 aatttgctca gtgctttctt ttagactaat gtcttctctt ggaaaggacc aattaagtat
     5341 ggttacaggt ccagttagca taccttttac gattttttga cttaaacttt gtgcaaattt
     5401 agaccaagct aaggtgatag gctttatgcg cgatacatca ccccaaatca caggaggttt
     5461 aacgcacctt gtgccatagc tttgcaccca accattttga gtaaataaaa agccctttag
     5521 attctctcca aaatactcca ccatatcatt tctttcaaat tctccatgca ctaaaacatc
     5581 aagtcctatt tcttcttgaa tttgtatgca ttctttgatt ttttgttggt taaattcagt
     5641 gtagttttga gctgaaattt tttcttgctt aaaggcaagg cgattagatc ttacatcagc
     5701 actttgagga aacgaaccta tggttgtggt tggtaaaaga gggagtttta aaaattcttt
     5761 ttggattaag gcgcgttctt taaaactagg cgttctggta aaatcttctt tttttaaagc
     5821 cttaagcctt gctttgactt tttcatctaa acgctctggg atatttttaa aaagctcttg
     5881 attggctcta aagagcggat tttcttcgct agaatttaga atttctttta aatctttaag
     5941 ttcttgaagt ttttctttgg caaaggaaaa aagtttaaga tagtttgaat ctaatttgct
     6001 ttcaaattca gtgctataag gcacatgtaa aagtgagcaa gaagtgttta agatgatatt
     6061 ttgtgtatat ttttgaagct ctttaataag ctttaggctt ttagcataat cattagtata
     6121 gatatttttg ccattaataa gacctgcaaa aaggatttta tctttagcaa agccgtattt
     6181 ttgaactaag gctaagcttt gtttaccttc gataaaatca agacccaaag catcaaattt
     6241 gctttctaaa agtttaggat aaatatctct taagtctcca aaatagcttt gaagtaaaat
     6301 tttaagatct tttttgtgat ttaaaagttc ttggtaaaat tcttcaaaca aagcgatatc
     6361 ttccttgctt aaatcataaa ccaaataagg ctcatcaagt tcaagccatg tcactttaag
     6421 ttcatttagt ttatcaaaaa gctctatgta agcgtttaaa agcttttctt tggcgagttt
     6481 ttgagttttt tcatctttaa aggcaatgag cttaaaaagt gtgaaaatgc ctattaaaac
     6541 aggcttgctt tctatgccaa gctctttagc ttcgagatat tctttaaaaa ttttatcccc
     6601 tgttaaagct ataatatcag cattatcgca ctcaggcacc aaataatgat aatttgtatt
     6661 gaaccatttt ttcattgcta aggctgtaac atctccattt tctccttgat aacctcgact
     6721 ttgagcaaag tattcatcta aagcatctaa atttaaattt ttatactttg tatgaacaat
     6781 gttaaaaagc acagctgcat ctaagacatt atcataaagt gaaaaatcat tactagggat
     6841 aaaatcaatg ccagcttttt gaatttcttg ccagtgtcta atccttaaat ccttagcact
     6901 ctttaaaagc tcctctttag aactttggtt tttaaagtat ttttcaatag caaattttaa
     6961 ttctctattt gcacctattc ttgggtaaga aatgattgaa tttttcatat ttgttctcct
     7021 taaaatgtag ggattaaagc accctgatat ttttcttcta taaatttttt aacttcatcg
     7081 ctttgcaagg cctttactag ggctttgatt ttaggaaggt tttcattacc ttctttaacg
     7141 gcgatgatat tgccatattc actatattta ctttctgtat aaagcccatc ttttacaggg
     7201 tttaaacctg ctaaaatagc aaaattgcta ttaataagag aataatctac atcatttaaa
     7261 ctccttgtaa gttgagcgtc ttttaactct acaaatttaa gcttcttagg atttttagtg
     7321 atatctaaag gagtgatgag ctcattatcc ttaacttcta taagtccttt gcttgctaca
     7381 atgcgtaaag cacggctttc atttgtagga ttattgggta tagaaatgct ttgtccttcc
     7441 tctgggttaa attctttata tttttttgaa tacactgcca taggttctat atggatactg
     7501 gcaactttta caagatgggt gccttgcctt tgattgaatt cttttaaata aggttcatgc
     7561 tgaaaataat tagcatctaa ctcaccattt tcaaccatta cattagggat taccccatca
     7621 ttaaattcat aaatttttaa atcataacct tgtttttgaa gtgctgattt tataaatctt
     7681 aaaatatctg catgaggtgt tatagaagag ccaactttaa gttcttcatc tgcccatgca
     7741 aaaccggtaa aaagagtagc gacgcaaaaa gctttagtaa ataaagtcat tttttctcct
     7801 ttatgcaaaa ctaaattttt ctatcaagtc actatgataa atacttgcta catcaggatg
     7861 agagcgtatc attcttttaa aataattact tgcaacattt cttaaaagtg gatttttagg
     7921 atcagtatcc acacctttgc tttctttggc aagctctgga tttaacttaa aaataggtat
     7981 atccttatca agttgcactc caagaaaata agctatgcta aagcgttctt ttgggcttaa
     8041 attcacgcgg tgaatagtag cttttaaata gccattggta gctagttcta aaaattctcc
     8101 tatattaact acaacgctat tttcaagtgg gggtatacta agccatttac catctataaa
     8161 agcttcaagt ccgctttgtt tttcttgaaa aacaaaagtg ataagcccgc catctttatg
     8221 tgaacccacg ccttgagtag tgttttttga acttttagga taatgtatga ttttacaatg
     8281 ttcataagaa ttttttccat aaagtttatc aaaagcattg ctaggtagat caagagcttg
     8341 agcgaaggct tttaaaagct ttaaacaagc ttttttggtt tgtttgtgcc aagttaagaa
     8401 agttttttta agttctggaa tttcactagg ccaaagatta ggaccttcta gtctttgcca
     8461 taagggtgag tttaaattcc agtttaaagc atctctttct gtgcctatat ccagttgttc
     8521 tatataatcc ttagatcctg ctgtgtattc aaaaccttcg ctagtataac ctctaaattg
     8581 aggagaatgt accatagaaa taagctcttt cgaacttcta gaaagattaa aaaattcttt
     8641 gccaagtttg aataatttct cgtttaaatt tttatctata ctggtattga taagataaaa
     8701 aaaacctatt ttagaagcaa tttctcttaa atttttaaga aaagtgcttt tatctttttc
     8761 ataagcttgt aaatcaagta taggtaagtt catttttgct ccttaaatta aaattaagga
     8821 taagaagata ttttgaatta aaattttatt agagaaattt ttgtaagtta agattttaaa
     8881 tgagtatttt gaaaaaataa acttttttga ctttcttaca cattatatct ccttatccac
     8941 tttttggacc tttggaaaca taatgttaag ccaaaggacg cactagatac tacacatctc
     9001 gcacatcagt ttcatttttt ctccttatta aaataataaa atttcaaaat catatataaa
     9061 aatatattaa ttaaagctta attgtttaaa aaataaagat tctttttaag cattctcgag
     9121 ttttaattct ttgttattca ttatgctaat acctagattt aaaacctttt gggcaatttg
     9181 tttggcttca tctaaagaat gcattgcgca agttccgcat tgatagatat taagttcagg
     9241 aattttgctt tgatcgctta cgcttaaaac atctttcata gctgctttcc aagctttagc
     9301 aacacttttt tcatctggtg ttccaattaa actcatataa aaacccgtgc gacaacccat
     9361 aggtgaaata tcaataattt caactgaatt tgaatttaaa tgatctctca taaatcctgc
     9421 aaataaatgt tctaaggtat gagtaccttt ttcgctcata atgtctttat ttggtatgca
     9481 aaaacgcaaa tcaaacacgc taatatcatc gcccttaggt gttttcataa ctttagctaa
     9541 acgcacagca ggagctggca ttttagtatg gtcaacttta aagctgtcta ataatggcat
     9601 tttaactcct taaatataaa ttgtctaaga attatagcat ttaaagttaa tatttaaagc
     9661 ctttctaaaa gaaaaaaaga taaaataaaa catttaaaaa ttcaaggaaa ttttatgttt
     9721 gaagtagtta taggtcttga agttcatact cagttaaata caaaaacaaa aatcttttgc
     9781 tcatgtgcaa cttcttttgg agaagctcca aataccaatg tttgtcccac ttgtttggcc
     9841 ttaccaggag ctttgcctgt tttaaatgaa gaggctgtaa aaaaagctat agcttttgga
     9901 aaagctgtca atgcaacaat taataaaaaa agtattttta atcgtaagaa ttatttttat
     9961 ccagatttac ctaaagccta tcaaatttca caatttgata tccctatagt agaaaagggt
    10021 gagcttttta tcaatgtaaa gggtgaaaat aaacgcatag gtattacaag agcacactta
    10081 gaagaagatg caggtaaaaa tatccacgaa aataattttt ctaaagtgga cttaaatcgt
    10141 gcaggaactc ctttgcttga gattgtcagc gaacctgagc ttagaagtag cgatgaggca
    10201 gtagcttatc ttaaaaaact tcattctatt atacgctttt tagacatttc agatgcaaat
    10261 atgcaagaag gaagttttag atgcgatgca aatgttagta taagacctaa gggcgataca
    10321 aaactttata ctagagtaga gattaaaaat cttaattctt ttcgttttat ccaaaaagct
    10381 atagaatatg aggtaaaaag acaaagtgag gcttgggaag atggaactta cgaacaagaa
    10441 gtagttcaag aaactagact ttttgatacg acaaatttag ttacaagaag tatgcgtggc
    10501 aaagaagaag cggcagaata tcgctatttt cctgatcctg atttattgcc tgttttatta
    10561 aaagatgagt ttttggatat taaaatccct gaacttcctg atgagaagaa agcacgcttt
    10621 atagacgagc ttggtataaa agaaagtgat gctgaggttt taatcagttc tttagaaatg
    10681 agtcgttttt ttaaaagtct tatttctcaa aatttaaatc ctaaactttg tgtaaattgg
    10741 ttaaatactg aacttatggg acttttaaaa ggagaattga ctatagaaaa ttctcccgta
    10801 gatgctcaaa agcttggagt tttaattaaa cgcatagaag atggcactat cagtgcaaaa
    10861 gcggctaaag atgttttggc ttttgtattt gaaaatacta gcgtggaaat tgatgaagct
    10921 atagaaaagc taggacttaa acaagtaagt gatgactcag ccatagaagc ggtgattgaa
    10981 caaattttaa atgcaaatgc cgataaggtt gcagagtata aaagtggtaa agagaagctt
    11041 tttggattct ttgtaggtca aaccatgaaa gaaggcaaag gagcttttaa tcctgcaaaa
    11101 gtaaatgaaa ttttaaaaac aaagcttggt tgatgcgtat agcggttatt ggtgcgggaa
    11161 aatggggcag tgctttacat ctagccttaa aagaaaatca caattgtttt atcagttctt
    11221 tgcatcagcg tgatttagaa gattttgtta gcataaaaga agctttagaa tgtgaatatc
    11281 ttgtttttgc tttaagttct caagggatgc gtgcttggct taaagaaaat ttcatcaaca
    11341 agggacaaaa aattttaatt gcttcaaaag gcatagaaga tcaaagttgt caatttttag
    11401 atgaaatttt tttagatttt gtaccaaaag aaaatttttg tgttttaagc ggtccttctt
    11461 ttgctgctga agtgatgcaa aaacttccta ctgctttgat gattagcggg ataaatcaag
    11521 agctttgtaa aaaatttgca agttttttcc ctgattttat taaaacttat attgataatg
    11581 atgttcgtgg tgctgaaatt tgtggtgctt ataagaatgt tttagcaatt gcaagtggga
    11641 ttagtgatgg gttaaaactt ggtaataatg caagagcagc actgatttca agaggactta
    11701 tagaaatgca tcgttttggt aaattttttg gcactaaaga agaaactttt ttaggattga
    11761 gtggggcagg ggatttgttt ttaactgcaa cgagtgtttt atcaagaaat tatagagtgg
    11821 gtttaaaact ggcgcaaaat caaaaattag atagtatttt agccgaactt aatgaagtag
    11881 cagaaggtgt aaaaactgct tatgctatag aaaaactagc aaaaatgaaa ggaatttata
    11941 cacctattgt aaatgaagta gtggcaattt ttaagggtaa aagcgtgcaa gaagcaacgc
    12001 agaatttatt aaagcaaaat gattaaggaa aaatcatgat aattaaaaat gcaaaaattt
    12061 atggagattc tttacaagat atagagatta aagaaggaaa aattaccaat attggttcta
    12121 atttacaagg cgaagaaatt ttagatgcta aaggtatgac tttacttcca tcttttgtgg
    12181 atttgtgtgt gagtttaaaa aacgataaat tttctttagc taatttagag cttttagaaa
    12241 atgagtgtct aaaaggagga atttctagta tagttttgcg tgattgcatg gattttgatg
    12301 aagaaagttt tgctttattt ttacaaaatt tagctcaaag aaagatgcaa attttttcaa
    12361 gtgtgcgggt taaggataca aacggcaagc ttaaaaattt agccactctt ttaaataaag
    12421 gtgcttgtgc tctagaactt gacagctctt tagatgcaaa tactttaaaa gtaagttcac
    12481 aatatgcttt tatgaaagac tctccaattt ttgtgcgttg ttatgataag gattttgatg
    12541 ataatggagt gatgaatgat tgtgaaatga gttttgagct agggcttata ggcatgagta
    12601 aaatcgctga aactagccag atagctaaaa tgaaagaatt ggctaaattt tataaaaata
    12661 aagttatttt tgatctttta agtttgaaag attctttagt attattagat gaaaaggatt
    12721 taaaacttgt aagcattcat catcttatca aagatgatag tgcttgtgaa gattttaata
    12781 cggctgcgaa acttatgcca cctttaagaa gcaaagaaga tgttttggct ttaagagagg
    12841 ctttaaaaga aggaaagatt agctttttaa cttccctgca tagtgcaaaa tcaatttctt
    12901 taaaagattt agcttttgat gaagcggctt ttggaattca tagcgtatgc gaatttataa
    12961 gtctttgtta tactttttta atcaaagaag gatttttaaa ttggcaagag ctttgtcgat
    13021 ttacaagtaa aaatcctagt gaatttttag gtttaaatag tggagttata gaagttggca
    13081 aagaagctaa tctagttctt tttgatgaga atgaagaaat ttttgctcca aaaagttctc
    13141 tttattctga ggataaactt tttggaaaga ttaagatgca tataattaaa ggaaaaaata
    13201 ttttagaaaa ataagcttta cttaaattcc taaagatagt ttaaatccta aaaatacaag
    13261 tgctgccata ataccagcgg ctggtaaagt gataatccaa gccaatccta taggcttcat
    13321 cataatccaa tttgcgtttt tattatacac tcctataccc aagatagcac ctatgagtat
    13381 atgggtggag ctaacaggaa ttccaaattg tgtagctaag agtataacta tgcttgcacc
    13441 aagttctgca gaaaatccag tagtaggccg tatggttgca agttttgaac ccactgtagt
    13501 aatcacttct ttacctaaaa accaaagtcc tacaactaga gcaactccaa acatagctaa
    13561 agcagcaaaa ggtacaggag aagtcgcgtt aattgtgccg ttttttaaga catctaaaat
    13621 cgctgcaaaa ggacctatag cattggctat atcattggct ccgtgtgaaa atgcaaaact
    13681 agaggctgta aatatttgaa accatgagaa aattctatca gtagttttat taagttctgt
    13741 ttttttaacg attttgacta tagcaaatgt tacaacataa cttatagttc ctataattcc
    13801 gataatccaa aagttttgta aaatatccaa agtgctaaca ttatttaaac ctttaaataa
    13861 aaacattgcc gaaatgatag cagcagcaat acaagcaatg attggcatat gagtttttaa
    13921 aatagagtaa atatctatat ctttttcttg ttctttaaat tccttcattt tatttctata
    13981 ga
//
LOCUS       DARGBD010000037        13786 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.037, whole genome shotgun sequence.
ACCESSION   DARGBD010000037 DARGBD010000000
VERSION     DARGBD010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13786
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.037"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            37..228
                     /gene="rpmI"
                     /locus_tag="SFZ04_000915"
     CDS             37..228
                     /gene="rpmI"
                     /locus_tag="SFZ04_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEG8065204.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            322..675
                     /gene="rplT"
                     /locus_tag="SFZ04_000916"
     CDS             322..675
                     /gene="rplT"
                     /locus_tag="SFZ04_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEG8065205.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(1244..1809)
                     /locus_tag="SFZ04_000917"
                     /pseudo
     CDS             complement(1244..1809)
                     /locus_tag="SFZ04_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            2291..3148
                     /gene="cheP"
                     /locus_tag="SFZ04_000918"
     CDS             2291..3148
                     /gene="cheP"
                     /locus_tag="SFZ04_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HEG8065206.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMMAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKSENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            3176..3655
                     /gene="cheQ"
                     /locus_tag="SFZ04_000919"
     CDS             3176..3655
                     /gene="cheQ"
                     /locus_tag="SFZ04_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HEG8065207.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(3624..4934)
                     /locus_tag="SFZ04_000920"
     CDS             complement(3624..4934)
                     /locus_tag="SFZ04_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8065208.1"
                     /translation="MNKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVFLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGVIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(4918..5094)
                     /locus_tag="SFZ04_000921"
     CDS             complement(4918..5094)
                     /locus_tag="SFZ04_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG8065209.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYTQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMEIKNEQNP"
     gene            5187..5660
                     /gene="moaC"
                     /locus_tag="SFZ04_000922"
     CDS             5187..5660
                     /gene="moaC"
                     /locus_tag="SFZ04_000922"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEG8065210.1"
                     /translation="MKLSHLDEKNYPKMVDVSDKNITLRIATASGIIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKIETDIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            5638..5901
                     /locus_tag="SFZ04_000923"
     CDS             5638..5901
                     /locus_tag="SFZ04_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HEG8065211.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHIKASEIFEEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            5891..7051
                     /locus_tag="SFZ04_000924"
     CDS             5891..7051
                     /locus_tag="SFZ04_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065212.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVAKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(7070..7828)
                     /gene="xth"
                     /locus_tag="SFZ04_000925"
     CDS             complement(7070..7828)
                     /gene="xth"
                     /locus_tag="SFZ04_000925"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEG8065213.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            7946..9484
                     /gene="eptC"
                     /locus_tag="SFZ04_000926"
     CDS             7946..9484
                     /gene="eptC"
                     /locus_tag="SFZ04_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HEG8065214.1"
                     /translation="MLRLTWLQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFAIVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMIQNVVQTDIK
                     EVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKSHLKIKIINIISGLIVVCAVLI
                     PLNKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDTAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     APFKEKLNHLSDQNILVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDNEALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENDIYLHGMPYAIAPSY
                     QTRIPAIFWSNDEKLMNLAKEHKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKL
                     KANP"
     gene            9481..9837
                     /locus_tag="SFZ04_000927"
     CDS             9481..9837
                     /locus_tag="SFZ04_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEG8065215.1"
                     /translation="MKPKYHFLNNARYALEGIFALFKNEMAFRIELCIIIPAIICSFF
                     LKVSFLEHLLLVSVLMLILIIEALNSAIEACVDLITNEWHEKAKIAKDCASAAVFFSV
                     LLALFVWSFILYSIYL"
     gene            9834..10061
                     /locus_tag="SFZ04_000928"
     CDS             9834..10061
                     /locus_tag="SFZ04_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HEG8065216.1"
                     /translation="MKFENLIQEILGKKRFELLKFLCENADENGFIMIKISELEEKLN
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLKI"
     gene            10070..11065
                     /gene="pyrC"
                     /locus_tag="SFZ04_000929"
     CDS             10070..11065
                     /gene="pyrC"
                     /locus_tag="SFZ04_000929"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEG8065217.1"
                     /translation="MKLKNPLDMHLHLRDESMLALVAPFSAKDFKAGVIMPNLITPLT
                     EIDVLKAYKERILKACKNEDFTPLMTLFFKDYDEQFLEKAKDELFAIKLYPAGITTNS
                     DNGISSFDIEKLKPTLNTMSELNIPLLVHGETNDFVMDREANFAKIYEKLAKNFPKLK
                     IVMEHITTKVLCDLLKDYENLYATITLHHLMITLDDVVGGKMDPHLFCKPIAKRYEDK
                     DALCELAFSGYEKAMFGSDSAPHPLHTKECCGCAAGVFSAPVILPVLVELFEKHSNET
                     NLQKFISDNACKIHNLKFEKDKIVILEKQEWQVAQKYGDVVPFMAGKTLNFKVAN"
     gene            11075..>13786
                     /locus_tag="SFZ04_000930"
     CDS             11075..>13786
                     /locus_tag="SFZ04_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG8065218.1"
                     /translation="MLKAYLENIKDISTNDKEHTHRTALQNLLQAIKDNQDKQNKISI
                     KQEPNNDKEGRGAPDFLITKDFLTLGYIENKRVNANLDNIITSDQILKYTKLSPNIIL
                     TDYLRFILLSLNDKNEIIICKEVKICSLDEIKSVIKNQSLLDTKTQELNELFSIFFSK
                     IPNPINSALDFANHLSLRTRILKDELLLSSKNETLLSLFNTFKETLYKELSYEEFCDS
                     FAQTLTYSLFLAKLNNDTAKEIDLNNAKKFIPKSFPLIRSMSGFLDDSFENLENIKWL
                     LEEIINIINHIDITSIIKELNKTGEKDLFNRPTILSTHKDPYLHFYETFLASYDPKLR
                     EVRGVYYTPAPVVIFIINAIDEILKQDFNHKKGLSEALDKNITLLDFATGTGTFLLEA
                     FRKALEPISKNSVNYNPKVLIDKFCGFEFLIAPYTIAHLKISQSFKEEFNSPLNDDES
                     LKIALTNTLYSKSISKEQNDQNTLFTLIDLTKEFKKAQKIKEEQILIITGNPPYSGAS
                     SNKGLYEDEIKISYGLEPSKANLNNEQKKWISSYFKEKSKQNTSTFKAIYEKHKLENE
                     KNSKVMLDDYVKFIRFAQSKIDSQESGIFAFISNNSFLDNPTFRGMRYSLMQSFDKIY
                     ILNLHGDTRKKEKAPDGSKDDNVFDIMQGVSINIFIKQNSKAKNTNIYYHDLYGKRKD
                     KYEFLYENDLNSIKWTLVKNNEPFYLFLPQNNDLLEEYNKGISVKDIFMLSSVGIASS
                     KDAILISTNNKKLEQQVYNFYNEFDKKYIKEIAYKPFDTQKIYYDIKKVERPRIDIME
                     HFLGYENIGLIYDRGTNLKEISNLFISSKVIDKHLVGANSYVSPLYLYPTTRSKKFLK
                     KENPNFNEENFTSKIENFKESFRTFIDELYKEKFSPEDILGYIYAVLF"
BASE COUNT         5158 a         1856 c         2032 g         4740 t
ORIGIN      
        1 ttgaaaaata aaaatttatc taaataagga aagcgtatgc caaagatgaa aagcgttaaa
       61 agcgcagtta aacgcttcaa agtaggtaaa aataaaatca aaagaggctc agcttttaga
      121 agtcatattt tgactaaaaa acctgcaaaa agaatgcgtg atcttcgcac agctaaatat
      181 gtgcatagca caaatgtaaa agctgttgaa aaaatgctag gaatttaagt ttttgactaa
      241 aagtcattca aactcccctc tgagataaaa tttcaagggc aagctccaaa tttggacgcc
      301 actttatgaa aggaaataaa aatggcaaga gtaaaaacag gtgttgttag acgccgcaga
      361 cataaaaaag ttttaaaatt agcgcgtggt ttttatagtg gacgccgcaa acattttaga
      421 aaggcaaaag aacaattaga aagaagtcta gtctatgctt atcgtgatag acgccgtaaa
      481 aaaagagact tccgtcgtct ttggattgtg cgtatcaatg ctgcttgcag actcaatgat
      541 ttaagttatt caagatttat caatggtctt aaaaaagcag gcattgaact tgatagaaaa
      601 attctagcag atttagctat gaatgatgct gctgcttttg caaaaattgc agaggccgca
      661 aaaaaagcac tttgattttt tagtgtaaga atttcaagat ttttgatttc ttgaaattct
      721 taatttttta gtattaattt agtttagcta gaacatcttc ataacatttg agttgattta
      781 agattatttt attaatctca tttgtcattt ctagtttttg accttttata ttaagataat
      841 agtatttaaa atcactgtat ttttgtatga aagtttttaa atatctaggt ttgaaatcat
      901 taaaattttc aacttcataa aaaatattgc cactaaactt tttgcaattc ccgctccata
      961 aatttctcca aaactagaaa aaccaactat gggaaaatta ttaaaatgga tttgatttaa
     1021 atgttctttg ttgtgaagtc ttcttaagat acaatcatta aaaattgctc ctagtggttt
     1081 tggtttatta agagaaaatt tttcataatc tttttttata gcttcaataa aatttgtttt
     1141 ttaagcaagc ttaattcctg agcgctttct atatcacaat aactaaataa tgttttattt
     1201 gggttgattt tcatagggga aataagatag tcttctccaa tttttaaagc aaaagtatat
     1261 tcttgcattt tatttttaag ttcttcaaaa gtgcagttaa aataattaca taaaacttca
     1321 accgcgttga tggattgaaa ggttttttat taataaattc gcgtacggtt ttatcatata
     1381 agcttacatc aagtatggta aaagtaatgt tgctttgagg attgaaattt tgagacttca
     1441 ttaaattaaa acggtattta ggtttaaatt gaacatgtat gcttaaagct tgatttttaa
     1501 tatttctccg ttataaaata taaatgctcc gctaaagtcc atgtttccgc tagacccacc
     1561 ccctactaaa gcacaaggat aggggttgtg tttgtacaaa agttctaaaa gagaactttc
     1621 gctttgactt aaaccatcat aaattaaata atgcaaagta tttatgcagt gtgcttcaaa
     1681 aggtatattt ataaataaaa cttctttttc tatcagtttt tttctttctg tataatcttt
     1741 tatatcacta aaaagcttga ttttatttgt gcaaagattt tctatcatat cttcactaaa
     1801 aagtatcaag cttattcctt ggatattttg tttataagga ctgttttcaa tgtttgagtt
     1861 agaatcaagg ttgcataata aatcagtagc actgcttaag atgatatcac attgctcatt
     1921 tatagaattt tgaatcttat ttcctatgat cgctagatta agttgattga cacaaagcct
     1981 ataattaatt ttggcttgat gtttattttt tttaattttt cttcaagttc attttattga
     2041 agatatggag cttctaaaac ttttttactt cttctttttt tgttgagctt ttatttttaa
     2101 aattaaaaaa acatcaattt aactccatta aaactatttt ttaattacta gttaactaaa
     2161 tcaagacact ataaattcgg catttatttg taatttttat tataccttaa gtcataaaaa
     2221 atgcaataag taaattaaaa tttagatata attgcaaatt ataataatat taattaagga
     2281 taaattaaat atgattggag atatgaatga gcttttatta aaaagcgttg aagtattgcc
     2341 acctttacct gatactgtaa gtaaattaag aaaatatgtg agcgaggcta attcaaatat
     2401 agaaactatg aaagttgctg aaatcatttc aagcgatccg ttgatgatgg ctaagctttt
     2461 gcaattagca aattctcctt attatggttt tacaagagaa attacaacca taaatcaagt
     2521 gattacttta ttaggcgttg gtaatatcat caatatagtt atggctgact ccattagaga
     2581 taattttaaa atagacgttt caccttatgg tttaaatact caaaattttt taaaaacgtg
     2641 caatgaagag gcaactttta tcgcaaattg gcttaatgat gaagataaaa aactttctca
     2701 tcttttagtt ccttgtgcaa tgcttttaag gcttggtatt gttatttttt caaattttct
     2761 tatacaaaat cataaggata aggatttttt agctttttta aataaaagtg aaaatcttgc
     2821 tttagcggag aatgaatttt taggcgtaga tcatatttct ttcttgggat ttttgttaca
     2881 tcgttggaat tttgatgatg ttttgattga aagtatatgt tttgttcgca ctcctcatgc
     2941 tgctcgcgaa aaagtgaaaa aatccgctta tgctttagca ataacagatc atctttttgc
     3001 tccgcatgat ggctcttctc catttaacgc aaaagctgca gttgctttac ttaaagaggc
     3061 aaaaactcaa ggaattaatt ttgatttaaa caatctttta tctaagcttc ctaacaaagc
     3121 taaggaaaat ttaaacaaag aagattaaag agccttttta aggctctaaa ttgtagtgat
     3181 gaaaagttta atcttacctc ctaatgaatt tttagatcac tatattttaa acgctgaatt
     3241 tcatcgtttt gctggaattt caaaaaatgc ttataaattt tggaaaaatg tagaaatagg
     3301 tagatatcaa ggaacaagaa ttatattttt gcatagaaat tgcattttag aaaaacatca
     3361 gcaagcttta aggcaatgta gtggtttaaa tggttttgta ttggcaagtg ctttttgttc
     3421 ttttactgga ttagccccct ctcatttggt ggaaaaaaat aattcttcta tttacaaact
     3481 tttagagctt aaggagattt gtgggattaa atttgttaat ttaaaaaaat tttatgattt
     3541 tttagggcta aattatcatc agcatattta tatagaaaaa tgccattttt ttagcccagc
     3601 tccttttgaa aagcgtatta aaatcactga gagtatgtgc gttgggtatt attaagataa
     3661 gaaaaaataa atgcacatag caaagctata atagccaaaa agaaaacata aagtcccaaa
     3721 gaaaaacgcc aaaaattact taaattattt aaggcaaaac tatgcaagaa aaaagcaagt
     3781 tgcggagtta aacctccagc tatagcataa gcaatattat atgaaaaaga aagtcctgaa
     3841 aatttaattt ttgcatcaaa tacttcactc attattaaag ggcaaaaatt catcactccg
     3901 ctaaaaaaac atacaagtaa atataagcaa gctactaggt taaaatcagc attttgtcta
     3961 tataaagtat taaaataaag caagcttgca attccaaaaa aaacactaaa aaatacacaa
     4021 gatttaataa cgcctatttt atccgctaaa attccactta taatacaccc taggcaaata
     4081 agcaaaattc cacctatttg aagataggtt tgtatagaag tattaatttg aagtattttt
     4141 gccatataac taggcataag caaaatcatt acaacaatac aacctgtcaa aacccaagta
     4201 atcatcatag aaagaacaat tcccatttta gcttttttaa acacttcttt taaaggaaat
     4261 ttttctaaag ccttgtcttt tttcatttgt tcaaaaacag gagtttctct taaaaatttt
     4321 ctcaaataag cagaaataat cccaaaaatt ccacctaaaa agaatggaat tctccaagcc
     4381 cattcatgaa gttcttcttg ggtataaatt ttattcataa ttaaaaaaac taaactacct
     4441 aataaaattc cacctacaac cgaagcggtt aaaattccca aataagttct tttttgacct
     4501 tgtggtgcgt gttcgtatac aaaaacccaa gctccaggga gttccccgcc tatagctata
     4561 ccttgacaaa tgcgtataaa aactaaaaat acaatgcaaa gaaaacctat gctttcataa
     4621 tttggaataa aagctagagt aaaagttgga ataaccatta acaaaatact aatcataaac
     4681 attcttttac gtccaaattt atctccaaaa tgtgccagta tcacaccccc taagggacgc
     4741 gctaaatatc cagctgcaaa tattccataa gtattaaaca tttgccaaaa actacttaaa
     4801 tcttttggaa aaaagtttgt tgaaatataa tttgcaaaaa atacaaaaat aataaaatca
     4861 taaaattcta aagttccacc taatgatgaa agtcctaaaa cttttatatc tttttggtta
     4921 agggttttgt tcattcttaa tctccatctc ataaaaatca tcatcattgt tatcatcatc
     4981 gtattcataa tcatcatcat cataattata atttttatgg tgattttgtg tatattcttc
     5041 atcttcattt tcataatcat cgtaatttaa atcttcttca tcttcataag ccattgtttt
     5101 ctccttaaat aaaaatacaa agcttatttt atcttaaatt tgtttggttt tgctataatt
     5161 tttataattt tttaaaaggt gaatttatga aattaagtca tttagatgaa aaaaattatc
     5221 ctaaaatggt agatgtaagc gataaaaata ttactttaag aatagccaca gccagtggta
     5281 taatatatat gagtcaagaa gcttttgatg taattaaaaa caataccgca aaaaaaggtc
     5341 ctgttcttca aacggctatt attgcggcta taatgggggc taaaaaaaca agtgaaatta
     5401 ttcctatgtg ccatcctttg atgctttcta agattgaaac agatattgtg gaatttgtta
     5461 aagaatgtgc atttaagctt attgtaacag ttaagtgtga aggtaaaaca ggagttgaaa
     5521 tggaagcttt aagtggagtt agtataggac ttttaactat atatgatatg atcaaggcta
     5581 tagataaatc aatgagaatt acggatatag tgcttgaaag caaagaagga ggtaaaagtg
     5641 gtaaatttgt gcgatcttaa aaaagaacct cagatcaatt atcctacttt ttgggattat
     5701 aaggtgattt ttgaggtgca tattaaggca agtgaaattt ttgaagaaat tttaggtcaa
     5761 agagaatata aatttgaaca ttcgaattca agtgcgagtg gaaaatatca aagttatttg
     5821 ttaaatgttt atgttgatag caaaaaagat cgtttggata tatttgataa attaaaagct
     5881 aaagcaaaat ttgtacttta agaaagaagg aaaaatgaaa aatactttaa ttatttttga
     5941 aaattcttta tcaaatctcg gtaaagatga agcaagtgat ttacttgaag acttgagttt
     6001 taatcttgcg tataagcaaa tttcacataa tcctcatgaa acaaaaaaag ttttaaattc
     6061 tcttttggtt gaatttttaa ctattttgaa aaaacttgat ttttttgatg atgaaaatgt
     6121 tgcaaaggtt atcaaagctt tggttaaggc gagtattgta gatgctcaaa attcacttta
     6181 tgagtatatt agcgaagctg aattattaaa caaacagatt gaaaatcaaa agaatttgat
     6241 taaaaatcaa atcagcgata atttttttga attcgagaat attttacaag aatgttcttt
     6301 ttgtgatgaa tttagtggcg gtttaaatga tgctatttta tttgatatag aaatgcttgg
     6361 aattttaaaa gaaaccgctg aaagtgcttt tttaactaca ttagaaaagg ctgaagatat
     6421 agaacttaca agtagtgaaa tagctaaaaa tctcgtatat aatgccattt gtgaagctca
     6481 ttttgaaaaa gaaagaattt taaaaatttc aagtattatt ttaaataccg cttttgaaat
     6541 agctaatgaa tctatggctt atgcaaaaga tctttgttta ggcgtgatta aaggcacaag
     6601 ggatggtatt gttttggcaa tggaaaaatt taaagcttca ttaacttatg caaattttga
     6661 agaagatgtt agtttaaaaa gcaaagaact aataggtata gaagatgatt ttattgctct
     6721 tttaaaaaaa gagattcaat tacaaaatga tccttgtaag agtatagttg agaatttgct
     6781 agaacatgaa cttgataatc tttttgctaa atttagacgt cttgcaggtg aaagcagaga
     6841 gcaactaata ttagttttaa atgatattaa gaaaaatcca aagattaatg attttaacaa
     6901 acttactcaa agaaaattaa atcgttttaa acaagaaatt tttgaattag aaaaaattgc
     6961 tagtgaaaaa tacaaagatt taaattccaa aaaagctaaa aagctcggtg taagactttg
     7021 ggaaaaagca aaaaaattcg ttaaaaaata atatcccatt tttgggatat taaatatcta
     7081 tttctatacc tacaggtgcg tgatcagagc caaaaatatc atctcttatg aaagcgtttt
     7141 taagtttatc ttttaaaccc tttgaaatga aaaaataatc aatcctccag cctacatttc
     7201 tttctcttgc tttcattcta tagctccacc acgagtattt ttctttgatt tcaccattaa
     7261 tttctctaaa agtatctata aaaccaagtt ttagcaaatc atcaatccaa gctctttcta
     7321 taggtaaaaa acctgaagtg ttggcattgg cttttggatg agtaagatcg atttctttat
     7381 gagcggtatt gacatcacca caaataataa tttcaaatcc atcctttaaa agcttatcca
     7441 aatacactaa aaaatctgca taaaatttca tcttaaaatt taaacgctct tcatcttttt
     7501 gaccatttgg aaaatagata ttaaaaagtg caatattttt aaagcggtgt tctaaaaccc
     7561 taccttcttc atcatcaaaa aattcgcatt tttttacttc gctattaaaa ttacaaagac
     7621 tcattacccc agaatacccc gctcttttag cagaattaaa atacatgtgt ttaaaaggat
     7681 attcataaat ttttttagga aatttatctt catgtgcttt gatttcttga aaacctataa
     7741 aatcaatttg ttcttgtgct atccaatcaa gtgcattttt atcacaaata gctcttaagc
     7801 cattgacatt ccatgaaagt agtttcatta ttttccttaa aattttcatt aaaagtgtaa
     7861 atcataacat aaaaagattt caaactacaa tccatttaaa aaaattcaat aaaattaaaa
     7921 gcttaaattt ggaggtggga tttatatgct tagattaact tggcttcagt ttactttttt
     7981 taattctttg atgattgtat tgttgaattt taatttattt tattttgtgt atgaaaaaaa
     8041 tacacaaaac tggtttataa cttttgtttt tattgtggcc tattttgcca ttgttcacgt
     8101 gatttgctct ttgcttttta taaagttttt tactaaattt ttttctatat tatttataat
     8161 atcatctttt ttaagtgttt actttattag tttttatggg gtgcttatag attctgatat
     8221 gatacaaaat gttgttcaaa cagatatcaa agaagtaaaa gatttgttaa atttaaaatt
     8281 aatcttattt gttgttttgg ctttattgtt ggttttttat gttgttaaag taaaaattga
     8341 ttattatggt agttttaaat cccatctaaa aattaaaatt atcaatataa tatcaggttt
     8401 gattgttgtt tgtgcggttt taatcccttt aaataaaact ttcttgcctt tttttagaaa
     8461 ctataatgaa ataagaatgt ataatacccc tttttatcaa atttatgccg tatatcgcta
     8521 ttatgttcgt tttgtaaaag ctaagccaga atttaaaact atagctaatg atgcttatag
     8581 agaaaacaat cacactaaaa aacttttagt tttggtagtg ggtgaaaccg ctagagcggc
     8641 aaattactct ttgggtggat atgctaaaaa tgataccaat ttttatacca aaaaagataa
     8701 tgtagtgttt tttgataatt tttcatcatg tggaacagca acagcggtaa gtttaccttg
     8761 tatgttttct atttctaagc gtgaaaatta ttcaagttca gaatttcaag aaaatgcgat
     8821 ggatgtgctt tataaaacag gtgtagatac tgcatggttt gataataatt ctggtggttg
     8881 taaaggggtt tgtgatagat tagcttataa gcaaaagctt tctagtgatt tggatgaaaa
     8941 tttactcgct ccttttaaag aaaaattaaa tcatttaagt gatcaaaata tattagttct
     9001 tcatttgcaa ggttctcatg ggccaactta ttataaacgc tatccaagtg aatttaaaaa
     9061 attcactcca acttgtgata ctaatgagct ttcaaaatgt gataacgagg ctttaatcaa
     9121 cacttatgac aatactttac tttatacaga ttatctttta agtgagatta taaaactatt
     9181 aaaagagcaa aaaagctatg aaagttcttt gttttatctt tcagatcatg gtgaaagttt
     9241 gggtgaaaat gatatttatc ttcatggtat gccttatgct atagcgccaa gttatcaaac
     9301 ccgtattcct gctatttttt ggagcaatga tgaaaaatta atgaatttag ctaaagagca
     9361 taaaggttta aaactttctc aagataatct ttttagtact cttttaggat attttgatgt
     9421 aaaaacaagt gtttatgagc cagaatatga tttattaaat cctaaactta aggcaaatcc
     9481 atgaagccta aatatcattt tttaaataat gcaagatatg ctttagaagg gatttttgct
     9541 ttatttaaaa atgaaatggc gtttagaatt gaactttgta ttattatccc agcgataatt
     9601 tgtagttttt tcttaaaagt tagttttttg gagcatttat tgttggtaag tgttttaatg
     9661 cttattttaa ttatcgaggc tttaaattcg gctattgaag cttgtgttga tttgattaca
     9721 aatgaatggc atgaaaaggc aaaaattgct aaagattgtg cgagtgcggc agtgtttttt
     9781 agtgtgcttt tagctctttt tgtttggagt tttattttat atagtattta cttatgaaat
     9841 ttgaaaattt aatacaagaa attttgggaa aaaagcgttt tgaattgtta aaatttttat
     9901 gcgaaaatgc cgatgaaaat ggttttatta tgattaaaat cagtgagctt gaagaaaaat
     9961 taaaccaaag caagcccact atcatcgcta cttttaaatt tttagaagaa aaaaaacttt
    10021 ttaagcgtct taaaaatgga ttttatcagc taaaaatata ggagataaaa tgaaacttaa
    10081 aaaccctttg gatatgcatt tacatttacg cgatgaaagt atgcttgcgc ttgtagctcc
    10141 ttttagtgca aaagacttta aggcaggggt tatcatgcca aatttaatca ccccacttac
    10201 tgaaatagat gtattaaaag cttataaaga acgcatttta aaagcatgta aaaatgaaga
    10261 ttttacgcct ttgatgactt tatttttcaa agactatgat gagcaatttt tagaaaaagc
    10321 taaagacgag ctttttgcta tcaagcttta tcctgcaggc atcactacca actcagataa
    10381 tggaatttca agttttgata tagaaaagtt aaaacctaca ttaaatacta tgagcgaatt
    10441 aaacataccc ttacttgtgc atggagaaac caatgatttt gtcatggata gagaagcaaa
    10501 ttttgccaaa atatatgaaa aattagctaa aaactttcca aaattaaaaa ttgtaatgga
    10561 gcatattacc actaaggttt tgtgtgattt attaaaagat tatgaaaatt tatacgcaac
    10621 tatcactttg catcatttaa tgataacgct tgatgatgta gtgggtggta aaatggatcc
    10681 acatttattt tgcaagccta ttgcaaaacg ctatgaagat aaagacgctt tatgtgagct
    10741 tgcttttagt ggctatgaaa aggctatgtt tggaagcgat agcgcgcctc atccattgca
    10801 cactaaagaa tgttgtggtt gtgcggctgg agtttttagc gcaccggtga ttttacctgt
    10861 attagttgaa ctttttgaaa aacattcaaa tgaaacaaat ttacaaaaat ttatttcaga
    10921 taatgcttgc aaaatccata atcttaaatt tgaaaaagat aaaatcgtca tcttagaaaa
    10981 acaagaatgg caagtagcgc aaaaatacgg cgatgtagtg ccatttatgg cagggaaaac
    11041 tttaaatttc aaagtcgcaa attaaaggaa attaatgcta aaagcttatc tagaaaacat
    11101 aaaagatatt tctacaaacg ataaagaaca tacccataga acagctttgc aaaatttatt
    11161 gcaagctata aaagataatc aagacaagca aaataaaatc tctatcaaac aagaaccaaa
    11221 taacgacaaa gaaggtagag gtgctccgga ttttttgatt acaaaagatt ttttaacact
    11281 aggttacata gaaaacaaaa gagtaaatgc aaatcttgat aacatcataa caagtgatca
    11341 aattttaaaa tacacaaaat taagcccaaa tatcattctc acagattatt taagatttat
    11401 attattaagt ttaaatgata agaatgaaat tatcatttgt aaagaagtaa aaatttgctc
    11461 tcttgatgag ataaaaagcg ttattaaaaa tcaatctttg ctagatacta aaacacaaga
    11521 gttaaacgaa ctttttagca tatttttttc taaaatccca aatcccataa attcagcttt
    11581 agattttgca aaccatctaa gcctaagaac aagaatttta aaagatgagc ttttattatc
    11641 aagcaaaaat gaaactttat taagtttatt taacaccttc aaagaaacac tttataaaga
    11701 attatcctat gaagaatttt gcgattcttt tgcacaaact ttaacttata gcttattctt
    11761 agcaaaatta aataacgata ccgcaaaaga aatagatcta aacaatgcta aaaaattcat
    11821 accaaaatca tttccattga tccgttctat gagtggattt ttagatgata gttttgaaaa
    11881 tttagaaaat ataaaatggc ttttagaaga aatcataaac attataaatc acatagacat
    11941 tacaagcatt attaaagaat taaacaaaac aggcgagaaa gacttattta atcgtcctac
    12001 tattttatct actcacaaag atccttattt gcacttttat gaaacatttt tagcaagtta
    12061 tgatccaaag cttagagaag taaggggagt atattatact cctgcgcctg tagtaatttt
    12121 catcataaat gccatagatg aaattttaaa acaagatttc aatcacaaaa aaggattaag
    12181 tgaagcttta gataaaaata taaccttact tgattttgcc acaggcactg gcaccttttt
    12241 acttgaagct tttagaaaag ctttagaacc tataagcaaa aatagcgtta attacaatcc
    12301 aaaagttttg atagacaaat tttgtggttt tgaattttta atagcccctt acaccatagc
    12361 acatttaaaa atttctcaaa gttttaaaga agaatttaac tctccattaa acgatgatga
    12421 aagtcttaaa atagcactaa caaatacttt atattctaaa agcatatcca aagaacaaaa
    12481 tgatcaaaac acgcttttta ctctcattga tctaacaaaa gaattcaaaa aagcacaaaa
    12541 aataaaagaa gaacaaattc taatcatcac aggcaatccg ccttatagtg gagcaagtag
    12601 caacaaaggc ttatacgaag atgagatcaa aataagctat ggtttagaac caagcaaagc
    12661 aaatcttaat aatgaacaaa aaaagtggat aagctcgtat tttaaagaaa aatccaaaca
    12721 aaacacaagt acttttaaag ccatatatga aaaacacaaa ctagaaaatg aaaaaaattc
    12781 aaaagtaatg cttgatgact atgtaaaatt catacgcttt gcccaaagta aaatcgactc
    12841 tcaagaaagc ggaatttttg cttttatttc aaataatagc tttttagata atcctacctt
    12901 tagaggtatg agatattctt taatgcaaag ctttgataaa atttatatac ttaatttaca
    12961 cggcgatact agaaaaaaag aaaaagctcc tgatggaagc aaagatgata atgtctttga
    13021 tatcatgcaa ggtgtgagca taaatatctt tataaaacaa aattcaaaag ctaaaaatac
    13081 aaacatttat tatcatgatt tatacggcaa aagaaaggat aaatacgaat ttttatatga
    13141 aaatgactta aattctataa aatggacttt ggtaaaaaac aacgagcctt tttatctttt
    13201 cttaccacaa aataatgatt tattagaaga atacaacaag ggcataagcg taaaagatat
    13261 ttttatgctt tcaagcgtag gaattgcaag ctctaaggat gctatattaa tctcaacgaa
    13321 taataaaaaa ttagaacaac aagtttataa tttttataat gaatttgata aaaaatacat
    13381 caaagaaata gcatataaac cttttgatac gcaaaaaatt tattatgata taaaaaaagt
    13441 ggaaagacca agaattgaca taatggaaca ttttttgggg tatgaaaaca taggtttgat
    13501 ttatgataga ggcactaatc taaaagaaat ttcaaattta tttataagct caaaagttat
    13561 agataaacat ttagtcggag caaatagcta tgtttctcca ctttatcttt atcctacaac
    13621 tagaagtaaa aaattcctaa aaaaagaaaa tccaaatttt aacgaagaaa atttcacctc
    13681 aaaaatagaa aatttcaaag aaagctttag aactttcata gatgagcttt ataaagaaaa
    13741 attctcacca gaagacatac taggctatat ttatgcggtg cttttt
//
LOCUS       DARGBD010000038        13698 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.038, whole genome shotgun sequence.
ACCESSION   DARGBD010000038 DARGBD010000000
VERSION     DARGBD010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13698
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.038"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            17..1591
                     /gene="yidC"
                     /locus_tag="SFZ04_000931"
     CDS             17..1591
                     /gene="yidC"
                     /locus_tag="SFZ04_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009293673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEG8065219.1"
                     /translation="MFQQKRILLAVVISFLFFVVYDYFFIPKQPLKIEQNITQQNQQN
                     TSINNTSNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLKDKKYQN
                     EKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQVLKLTQN
                     LSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALVMDNKET
                     IETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANQNPIVFAYSD
                     NEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIGNWGWAI
                     VVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMMELYKKHG
                     ANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILPILMGAT
                     MFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLVQQWVIN
                     KIFAKEHHKKQAEHEK"
     gene            1588..2406
                     /locus_tag="SFZ04_000932"
     CDS             1588..2406
                     /locus_tag="SFZ04_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HEG8065220.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIETKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQNVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAKFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            2399..3727
                     /gene="mnmE"
                     /locus_tag="SFZ04_000933"
     CDS             2399..3727
                     /gene="mnmE"
                     /locus_tag="SFZ04_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEG8065221.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYFNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            3738..5924
                     /gene="purL"
                     /locus_tag="SFZ04_000934"
     CDS             3738..5924
                     /gene="purL"
                     /locus_tag="SFZ04_000934"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEG8065222.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGNIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPIRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVIGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPISEPKYLSEIKDYKFE
                     LKLSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASVIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGKSLGEFGGSMVMKIQDKKVSGSLKELDYKAEIALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKIFAISSVGVNLTSGFDDEKMIFDESASRAIVGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDNIELSKAELDKLYFESFKEQIQ"
     gene            5921..6691
                     /locus_tag="SFZ04_000935"
     CDS             5921..6691
                     /locus_tag="SFZ04_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HEG8065223.1"
                     /translation="MTLVLIILVILVFYWYYKTWGKQDFLNSAARGAKGFAKGFVRGV
                     MEERMDEFKRRMNYYVIVLLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELSNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            6694..8226
                     /gene="purH"
                     /locus_tag="SFZ04_000936"
     CDS             6694..8226
                     /gene="purH"
                     /locus_tag="SFZ04_000936"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEG8065224.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLDFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAMF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDEFKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKVAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            8321..8782
                     /locus_tag="SFZ04_000937"
     CDS             8321..8782
                     /locus_tag="SFZ04_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065225.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     NTVSTSVFQTMRMAMNLGDPEKIKEAIEDVKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENINGVVYLRLIRPLIADESCVTCHEMLMQEV"
     gene            9239..9772
                     /locus_tag="SFZ04_000938"
     CDS             9239..9772
                     /locus_tag="SFZ04_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG8065226.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSIVSQNENELAKKV
                     ENMVNQAGNIQKATQMMDKIADKTKLPSLNAGIEVARAGAFGLGFSVIAEDDRQLAQN
                     SEEFLGNVAQITKELLQSINEVNAELKKNTQSIQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENI"
     gene            9788..9907
                     /locus_tag="SFZ04_000939"
     CDS             9788..9907
                     /locus_tag="SFZ04_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HEG8065227.1"
                     /translation="MQENVEVSEKNEEISKILLQVVDELKIVCHNLESELNQF"
     gene            9923..10357
                     /locus_tag="SFZ04_000940"
     CDS             9923..10357
                     /locus_tag="SFZ04_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HEG8065228.1"
                     /translation="MKKTLQIALAATFFAGCASTSVTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGIFKISNENGKLVLSNDEMKIFFK"
     gene            10456..11433
                     /locus_tag="SFZ04_000941"
     CDS             10456..11433
                     /locus_tag="SFZ04_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEG8065229.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVS
                     EFQKVLLIAPKQSDFENFKDIKKVEYFKCDTNDTWIRDFGAIDIIENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDIKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLVELPIPNPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPSHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            11430..12317
                     /locus_tag="SFZ04_000942"
     CDS             11430..12317
                     /locus_tag="SFZ04_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEG8065230.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            12314..13186
                     /locus_tag="SFZ04_000943"
     CDS             12314..13186
                     /locus_tag="SFZ04_000943"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HEG8065231.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEVSKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGIEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(13198..>13698)
                     /locus_tag="SFZ04_000944"
     CDS             complement(13198..>13698)
                     /locus_tag="SFZ04_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEG8065232.1"
                     /translation="NLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNS
                     AAQKNSFNHFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNI
                     WGLRKDATQRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYL
                     ENIQNK"
BASE COUNT         4931 a         1681 c         2621 g         4465 t
ORIGIN      
        1 gaataattca aataatattt ttcagcaaaa gcgtatactt ttagctgttg tgatctcttt
       61 tttatttttt gttgtttacg attatttttt cattccaaaa caacctttaa aaatagaaca
      121 aaacattaca caacaaaatc aacaaaacac aagcataaat aacacttcta atatacaaaa
      181 taccaccaca aatactccaa gtgcagcttt agtttcacaa gatagtgtga tatctaaggt
      241 tcaaagcaag cattttgaag cacaaattga ctcttttggt agaatttctg ctttttattt
      301 aaaagataaa aaataccaaa atgagaaagg agaatttata aatcttgtta gcaaggaaaa
      361 tagtccttat cctttagaaa tgcgttttag tgatccaagt attaactcag aggcttttaa
      421 aattccttat gttgctaacg ctagcaatct ttttgttgat gaaaatggaa gtcaagtttt
      481 aaaactcact caaaatcttt ctggattgaa aatcgaaaaa gatattactt tttatccaaa
      541 aggaaattat gagatagaag ttaaactcag caagaatgca aattatttta taagtccagg
      601 atatcgtcca aatattgccg tagatagtta tacagttcat ggtgctttgg taatggataa
      661 taaagaaacc atcgaaactt ataaagatgg agatgtagaa aaggatgaaa gtgctaataa
      721 tgtcgtaatg acttcggctt ttgatagata ctatgcaact ttcttttata attttgataa
      781 acctttaaat gtggcaatca gcaaggatgc taatcaaaac cctatagttt ttgcttatag
      841 tgataatgaa tttaaagcag ggggctatat aggctctaaa gaacatgtga ttttaagaag
      901 tatagatcca cgccttgaag cagttgttga atatggttgg tttactttta ttgctaagcc
      961 tatgtttgag tttttgaatt tcttgcatca gtatatagga aattggggtt gggctatcgt
     1021 tgtgatgact ttaattgtgc gtattatttt attcccgcta acttataagt ctatgatttc
     1081 tatgaataaa cttaaagatc ttgctcctaa aatgaaagat attagagagc gttataaagg
     1141 cgatccacaa aaaatgaata tgcacatgat ggagctttat aaaaaacatg gtgcaaatcc
     1201 tatgagtggt tgtttgccta tacttttaca aattcctatt ttctttgcta tttatcgcgt
     1261 tttgcttaat gctattgaac taaaagcagc tccttgggcg ttttggatac atgatttatc
     1321 ggtaatggat ccttatttca ttttgcctat tttaatgggt gcaacgatgt ttttacaaca
     1381 acttattaca cctatgacta tacaagatcc tatgcaagct aagattatga aatttttacc
     1441 agtgattttt acttttttct ttatcacttt cccagcagga cttacgcttt attggtttgt
     1501 aaataacctt tgttctttgg ttcaacaatg ggttatcaat aaaatatttg ctaaagaaca
     1561 tcacaaaaaa caagcggagc atgaaaaatg aaaatcgaag ccattgatct tcaaagtgcc
     1621 ttaacagaag cttcaagaag tttagaatgt tccgtgatgg acttagaata tgagattatt
     1681 cagcatccaa gaaaaggttt ttttggattt ggaagaaaaa aggcaattat agaggctaaa
     1741 gcaaaaaaaa ggattttgaa aaaaaatcct aaaaaagaat ttacaagttc aaaaaatcac
     1801 aaaccagaaa cacatgagcc aaaacaagaa aacaagattg aaacaaaaaa tgaaaaaaat
     1861 aaaagccaaa aagaaaaata tacagtaaaa agtgatgaaa tttttgatag ttttcatcga
     1921 gaaagcaaag gagtgcgtaa tactcaggat attttagatg agattcgcat tcagcttgta
     1981 aaacttttag aaagctccca gtttaaaata gagcttagtg aacttagaat gtatgatgaa
     2041 gattgcgttt tgattcgatt ggatggagaa gatgctgctt tgatgatagg taaagaagca
     2101 catcgttaca aggctatttc ttatctttta cataattgga tcaatttaaa atataatctt
     2161 ttagtgcgcc ttgagatcgc tcaattttta gaaaatcaaa ttcaaggtat gcagctttat
     2221 ttacaaaacg tgattgaaaa aattaaaatt catggacgcg gacaaaccaa acctttggat
     2281 ggggttttga taaaaatcgc tttagagcag ttaagagcta aatttccaga taagtatgta
     2341 ggaattaagc aaaataatga tcaaagattt gttgtaataa acgacttttt caaaaaagat
     2401 gagtgatact atagcggcta ttgccacagc tcatggtgtg ggttcgattt ctattgtaag
     2461 attaagcggt gaaagggctt tagaatttgc cttaaagctt agccacaaaa ccaaacttac
     2521 cccacgccat gctactttta caaaactttt taatcaaaat aatgaaatta tcgatgaagc
     2581 tataatgata tattttaaag ccccttatag ttttacaggg gaagatatag tagagtttca
     2641 aactcatgga ggatttagtg tgagtgaagt tttactcgaa gaacttgtga gtttaggagc
     2701 aagacttgct ttagcagggg aatttagcaa aagagcgtgt ttaaatggca aaatgactcc
     2761 tttaaaagct ttaaatatac aagatctcat actttcaaaa tctgcacttg cagctaaaat
     2821 tatagcacgt aacatgcaag gaaacttagg agaactttta gaaaaaattc gcacagattt
     2881 ggttaaaact ttagcttttg tagaaactag tattgattat gctgatgatg atttaccttc
     2941 tgatttatta gaacaaattt ctactatgtg tgaagaaaat tctaaaattt taaaagaaat
     3001 ttatacgctt tctcaaagca aaaaaggact catagaaggt tttaaaatcg ctattgtagg
     3061 taagccaaat gtaggcaaat cttcgctttt aaatgccttg ctttcttatg aaagagctat
     3121 tgtttcagat atagcaggca ccactcgtga tactatagaa gagagcttta aattaggaac
     3181 gcatttatta cgcattatag atacagcggg tattagggaa agtaaagatg ttatagaaca
     3241 aatcggcgta gctttaagta aaaaaagttt agaagatgca gatattattt tggcagtctt
     3301 tgatgcttca agagtgcaag ataaagaaga tgagaaaatt tttgacttat tagcaaatac
     3361 tgataaaaaa atcttttgga ttttaaataa aagtgattta gaaaatgttt tcaaaaatac
     3421 tcaaaataaa aattttatca agcttagtgc tcaaaaagac atcactttat taaaagaaga
     3481 attgcaaaat tattttaatt cttttgatag cgaaggtatt atggtaagtt ctttagatct
     3541 tattaatgct tgtaaaattt caagtgaagc gatttttaga gctaaagggc ttttagagga
     3601 aagttcttta gaactttttg cttttgagct taatttagcg attaatgaac ttgcaagatt
     3661 taccaaagat tttcaaagag atgaaatttt agacgaaatg tttggtaatt tttgtttagg
     3721 aaaatgaaag gataaaaatg gacaaagaaa ccataaaagc acataaaatc agtgatgaag
     3781 aatatgcaca aattttagaa attttaggac gcgagccaaa tttattagaa cttggggtta
     3841 tttctgcgat gtggagcgag cattgctctt ataaatccag taaaaaatat cttaatggtt
     3901 ttccaactaa agcaccttgg gtgattcaag gcccaggaga aaacgcaggg gttattgata
     3961 ttgggcaagg tatggcagca gtttttaagg tagaaagtca caatcatcct agctttatcg
     4021 agccttttgc aggtgcggct acgggagtag ggggaatttt gcgtgatgtt tttactatgg
     4081 gtgcaagagt ggttgcaggg ctaaattctt taaaatttgg caatattcat gatgaaaaat
     4141 gcggcaaaca tcaaaaatac cttgttaaag gtgtggtaaa tggaatttct cattatggaa
     4201 attgcatggg tgtgccaact ataggtggag aatgtgcttt tgatgagtgt tttaatggaa
     4261 atatcttagt taatgccttt gctttagggg tttgtaaaag tgaagatatc ttttatgcta
     4321 aggctgaagg tgtaggaaat cctgtgattt atgtgggttc aaaaacaggg cgtgatggac
     4381 ttggtggagc ggttatggca agtgatagct tcaatgaaga aagcaaatct ttgcgtccta
     4441 cagtgcaaat tggcgatcct ttcagtgaaa aacttcttat ggaagcttgt ttagagcttt
     4501 ttaaaactga ttatattgtg ggtattcaag atatgggtgc tgcagggctt acttcaagtt
     4561 cttttgaaat ggcaggaaga agtggcagtg gcatgaaact ttacttagat aaaactccta
     4621 tacgtgaaag cggtatgact ccttatgagt taatgcttag cgagtctcaa gaaagaatgc
     4681 ttatttgtgc gaaaaaaggc tatgaagata aggttataga aattttcaaa aaatgggatt
     4741 tagatgctgt ggttataggt gaagttacca atacaggaaa aatggagctt ttttggcatg
     4801 atgagcttgt agggcttatt cctatcgagc ctctaagtga aaaagcgccg attttaagtc
     4861 gtcctataag tgagccaaaa tatttaagtg aaattaaaga ttataaattt gagctaaaat
     4921 taagcattca agagcttttt atacaaatgc ttcaaaatga aaatattaac aacaaagctt
     4981 ttatttatga tcaatttgat tcaagtgtgc aaaccaatac tataaaagct gatggaagat
     5041 taggtgctag tgttattcgt atcaaagaaa atggtgcaag tgtggctatg gctatagaat
     5101 gtaactcacg cttaaattat gtaaatccta aaataggagc agctttagca gtagcttcag
     5161 caggaagaaa agttgcttgc acgggggcta agcctttggc aataagtgat tgtttaaatt
     5221 atggaaatcc gcaaaatcct gaagtgatgt ggcaatttgc gcaaggttgc gaaggcatta
     5281 aagaagcttg taaagagtta aataccccag tagtaagcgg caatgtttca ctttataatg
     5341 aaactgaagg cgtaagtatt tatccaagtc ctactatagt aagcgtaggg gttttagaag
     5401 atgcaaataa aaccttaaaa gctagttttg aaaaagaaaa tttaagtgtt tatcttttgg
     5461 gtaaaagttt aggggaattt ggcggatcta tggtaatgaa aatccaagat aaaaaagtat
     5521 caggaagtct taaagagctt gattataaag ctgaaattgc actttgggat ttgctttata
     5581 aagccaatca aaattcttta cttgagtgtg ccaatagcgt aggaataggg ggtattgcta
     5641 tgactttggc aaaaatattt gctatttcta gtgtgggtgt aaatttaaca agtggttttg
     5701 atgatgaaaa aatgattttt gatgagagtg caagtcgtgc tatagtaggg cttagcaaag
     5761 aaaatgaaga agctttttta aatttagcca aagaatttgg agtaaaagct tataaattag
     5821 gtgtgagtac aagccaaaaa cattttaaac ttgataacat tgagttaagc aaggctgaac
     5881 ttgacaagct ttattttgaa agttttaaag agcaaatcca atgactttag ttttaattat
     5941 actcgttatt ttggtgtttt actggtatta taaaacttgg ggaaaacagg attttttaaa
     6001 ctcagctgca agaggagcca aaggctttgc taagggtttt gttcgtgggg ttatggaaga
     6061 aagaatggat gagtttaaaa ggcgtatgaa ttactatgtt atcgtacttt tggcaaaaat
     6121 tgcaaaaagt gatggtaggg taagtgaaaa tgaagctgaa atgatcaaag atcttttaga
     6181 tgcaaatgct aaagatgaaa aagaaagagc ttttttaaaa gcaagtttta atgaacataa
     6241 agaaaattta agtgatgctt tttatgtggc aaaagatttt ttaaaagaag tgcctttgcc
     6301 taaaaatgag cgttttaatg tcttgcgtgt gcttgttttt atggctttaa tcgatgcaga
     6361 ttttaatgct aaaaagcgtg aaattttaga gcaaatcgct aaagcctttg atatagcaaa
     6421 aagcgaatta gacgctttta tagcaagtct ttcaaattta aaaagtacta aaaaagaatt
     6481 aagccttgat gaagcttttg ctattttaga actttcaaat aatgcggatt taaatgcggt
     6541 aaaaaaacaa taccgcaatt tagcaaaaaa atatcatcct gatattttaa atgcaaacaa
     6601 tgttagtgaa gaagagctta aaatcggtgt agagaaattt caaaaaatca acgaagctta
     6661 cgaaaaagtt aaaaaacatt tagaaaggta aaaatgagag cattacttag tgtgagtgat
     6721 aaagaaggca tagtagaatt tggcaaagag cttgaaaatt tagactttga gattctttca
     6781 acaggcggga cttttaagct tttaaaagaa aatggaataa aagttataga agtgagtgat
     6841 tttacaaaga gtcctgagct ttttgaaggg cgtgtgaaga ctttgcatcc taagattcac
     6901 ggtgggattt tacacaaaag aagcgatgaa aatcatatca aacaagcaaa agaaaatgaa
     6961 attttaggca ttgatctagt ttgtgtgaat ttatatcctt ttaaaaaaac caccatcatg
     7021 agcgatgatt ttgatgaaat tatagaaaat atcgacatag gtgggcctgc gatgataaga
     7081 agtgcagcaa agaactataa agatgtgatg gtactttgcg atccgcttga ttatgaaaaa
     7141 gtgattgaga ctttaaaaaa aggtcaaaat gatgagaatt ttcgtttaaa tttgatgata
     7201 aaagcttatg agcatacggc aaattatgat gcttatattg caaattatat gaatgaacgc
     7261 tttaacggag gttttggagc gagtaaattt atagtagggc aaaaagtatt tgatacaaaa
     7321 tatggagaaa atccacatca aaaaggggct ttatatgagt ttgatgcctt ttttagtgca
     7381 aattttaaag ctcttaaagg cgaagcaagt tttaataatc taaccgatat taatgcagct
     7441 ttaaacttag ctagtagctt tgataaagct ccggctattg ctatagtaaa acatggaaat
     7501 ccttgcggtt ttgctataaa agaaaattta gtacaaagct atatacatgc tttaaaatgc
     7561 gatagcgtta gtgcttatgg aggagtggtt gcaatcaatg gaactcttga tgaggcttta
     7621 gcaaataaaa tcaatgaaat ttatgtagaa gtaatcatcg cagccaatgt agatgaaaaa
     7681 gctttagcta tgtttgaagg taaaaaacgc attaaaattt tcactcaaga aagtccattt
     7741 ttaatccgca gttttgataa atatgatttt aaacatattg atgggggttt tgtatatcaa
     7801 aacagcgatg aagttggcga agatgagttt aaaaatgcaa agcttatgag tcaaagagag
     7861 gcaagtaagg aagaattaaa agatcttgaa atcgccatga aaatagcagc atttaccaaa
     7921 tcaaacaatg ttgtttatgt aaaaaatggc gctatggtgg ctataggcat gggtatgaca
     7981 agcagaatcg atgcagcaaa ggtagcaatc gctaaagcta aagaaatggg gcttgatttg
     8041 caaggttgcg ttttagcaag tgaagccttt tttcctttta gagatagcat agatgaagca
     8101 agtaaagtag gggttaaagc tatagtagaa ccaggcggaa gtataaggga tgatgaagtg
     8161 gtaaaagcag ctgatgagta tggtatggcg ctttatttca caggagtaag acatttctta
     8221 cattaagttt aatagaatgt tatgtttttt acacataatt taataaaaat taaattatgt
     8281 gtaaaatatt tccgaaaaat tttattttta gaaaactatg atgtttaaaa ctataggatt
     8341 taaggtttct gctgcaattt ttgtggtgtt gcttataagt ttcattgtaa tgcaagtgat
     8401 tttaaatttg gattttaaaa atactgccaa taaaatgagc agggcaaatt taaataccgt
     8461 aagtacttct gtttttcaaa caatgagaat ggctatgaat ttaggagatc ctgaaaaaat
     8521 taaagaagcc attgaagatg taaaaagtat agagggtatt agtgatatta aaatttatcc
     8581 ttcaaaagat actatagatc tttttgagat gaaagcccct caaatttcaa atgataagcg
     8641 tattatagaa caattttcaa atcctaaaat tcaagctttg gaagaaaata taaatggtgt
     8701 tgtgtattta agattgatac gccctttgat tgcagatgaa agttgtgtta cttgtcatga
     8761 aatgctaatg caggaagtgt gattggggtt atggatatat cacattcttt agaaggtgtt
     8821 taaaaagata taagcaaaac cggtcaatct tatattataa tatttactat tgctttgatt
     8881 tttacccttt gtggtggttc ttttaatgct taaagttgtt gttagaaagc ccgttttaga
     8941 gcttttaaat catgctaaag aattagctca aggaagcggc aattttaaaa gctcgtattt
     9001 cagttaaagg tcaagatgaa attgctttag cttgtggata tatcaatcaa tttatcgaaa
     9061 aaactcacaa ggcagttagc agtgcaagtc ataatttaaa aaatgtagaa aaacaaagca
     9121 atcttttaaa ttcaaatgct attttttaag tgatatcagt tcacaaagtc ataagcaaat
     9181 agatcaaagt tttaaacttg gtgcaaatgt tggcaatgaa cttagagaac ttgctagttt
     9241 gtcaaataag gcaaatagtg ccaatgaaaa atccttttta ttattagagc aaatgcttaa
     9301 atctttgttt aatgttgcta ataaagtatc aatagtatcc caaaatgaaa atgaattggc
     9361 taaaaaagtt gaaaacatgg tcaatcaagc aggtaatata caaaaagcaa ctcaaatgat
     9421 ggataagatc gcagataaaa caaaattacc atccctaaat gctggcatag aagtagctag
     9481 ggctggtgca tttggactag gtttttctgt aattgctgag gatgataggc agttggctca
     9541 gaacagtgaa gaatttttgg gaaatgtagc tcaaattaca aaagagcttt tacaaagtat
     9601 taatgaggtt aacgcagaat taaagaaaaa tactcaaagt atacaagctt taaatgatga
     9661 caccgcttta ttggttgatg atgctaatga ggttaaatta tgcaacgaag atgctagggc
     9721 tttggtaact caatgtactg aaaaaataaa aatttcccaa gagaatatat aaaatttact
     9781 ttctcgtatg caagaaaatg ttgaagtaag tgaaaagaat gaagaaattt ctaaaattct
     9841 acttcaagtt gtagatgagt taaaaatagt gtgtcataat ctcgaaagcg aacttaacca
     9901 attttaaatt taaaggaata aaatgaaaaa aacgcttcaa attgctttag ctgcaacttt
     9961 ttttgcaggt tgtgctagta cttctgttac ttcatctact tctaaaggta ataatgaact
    10021 tgtacaaaat cagcttttca aaatagaaaa aattatagtt aatggtaaaa cttttgatcc
    10081 aaaaaacgca gaggaaagtc caaatattag ttttgaaaat aataaatttt atggttattc
    10141 agggtgtaat cgtttttttg gttcttatca aactaaggcg gatactttgc aaatcgaagg
    10201 tgatcgcgta gcttcaactc aaatgctttg tcatccaatg gatgtaatgg attttgaaaa
    10261 ttctttcctt tcaaatttca aaggaatttt taaaatttca aatgaaaatg gaaaacttgt
    10321 tttaagtaat gatgaaatga agatcttttt taaataatat cctaaagcct cgaaatatcg
    10381 aggtaatctt cttaaatttg acaaaagtct aaaaaatgat acaattataa ttttattatc
    10441 aaaaaaggta gttaaatgat aaaatcaatt cctgaatgga gtgagcaaga atacctcatg
    10501 ctttctttac cccatgaaaa aagcgattgg aatccctatt tagaggaaat tttgcaaagt
    10561 tataaagaat ttgtaaaagc agtgagtgaa tttcaaaaag ttttacttat agctcctaaa
    10621 cagagtgatt ttgaaaattt taaagatata aaaaaagtag agtattttaa atgtgatacc
    10681 aatgatactt ggatacgtga ttttggagct atagatataa tagaaaatgg tcgtttaaag
    10741 gctcttgatt ttacttttaa tgcttgggga aataaatttc aaagtgagct tgataatgct
    10801 gtaaattcta agctttttaa agagaaattt aaagaggaac ttaaaaaggt tgattttatt
    10861 ttagaaggag gaagtattga ctttaatgga gagggtgtga tgcttacaag ctctcattgt
    10921 cttttaaatg aaaatagaaa ttctcatcta aacaaaaccc aaattgatat aaaattaaaa
    10981 gaaatttttg gtttaaagca aattatttgg ctagaaaatg gtttcataaa aggtgatgat
    11041 acagatcatc atatcgatac cttagcaaga tttatagata aaaataccat agcacattgt
    11101 atttgtgaag atgaagagga tgaacattat ttgcctttgc aaaaaatgaa agaagagctt
    11161 aaaaaaacag gctttgattt agtagaactt cctataccta atcctttata ctatgaagga
    11221 agaagattag gcgcaactta tgcgaatttt gtttttataa ataatgcttt aattgtgcct
    11281 ttttataagg ataaaaatga tgaaatcata gctaaaagac tttctaaagc tttacctagt
    11341 cataaaatta taggagtaga tgcaagagtg tttttacgac aaaacggttc tttgcattgt
    11401 tcttgtcaaa atcgtttcaa aggtttaaga tgagtttgca aaaaaaagca actcttgtag
    11461 caagtttatg tgccattgtt ttagccttgg ttaaatttat agtaggctta acaagtggtt
    11521 ctgttgcagt actttcaagt gcgattgatt ctttaatgga ttttgctatt tctgctttta
    11581 attttttggc tcttaaaaaa agctcacaaa aggcgaatga aaattataat tttggttttt
    11641 ctaaaattga agctttaatg ggtttgttag aaggtgtttt tatagttggc gtggggattt
    11701 ttatttttta tgagagtatt ttaaagattt attataaaga agaaattaaa gatttaaatt
    11761 caagcatcta tgtgatgatt tttgctttaa ttatgacttt ttttcttgta ctttttttaa
    11821 attatgtagc taaaaaaacc aaaagtttaa ttatagaaag tgatgctttg cattacaaaa
    11881 cagattgctt aaccaatgct tgtactttag gggctttggt tttgatttat tttacaaatt
    11941 tacatattat tgatgctatt tttgggatag tgatcagtct ttatacggca ttttctgctt
    12001 ttaaaatcat taaaaaagct ttagcttttt taatggatga ggctttacct aaggaacaag
    12061 tggataaaat ttgtactttg atttctaata atcctgaaat aatttcctat catgaattaa
    12121 agacgcgtaa aactccaagt tgtaattatt taagcgtgca tttggttttt tgccctataa
    12181 tttcgctttt aaatgcgcat aaaatttcag atgaaataga agaaggtgtg cgtaagatgt
    12241 ttgaaaatga aaaatgggat atacaaattc atttagatcc ttatgatgat gcagaacaag
    12301 aaaggcaaag acaatgaaaa tcgctttaat acaacaaaaa tttcatttaa ataaagaaca
    12361 aactataaaa aaaacttgcg aatttataga agaagtctct aaacaaggag ctgagcttgt
    12421 ttgcttagga gaacttcatc aaagtgagta tttttgtcaa agtgaaaatg tggatttttt
    12481 tgactatgct aatgattatg aaaaagatgt gaaattttgg gcaaatatag ctagaaaaaa
    12541 tcaaatagtg cttattgctt cattgtttga aaaacgaagt gccggacttt atcataatac
    12601 tgcagtggtt tttgaaaaag atggttctat agcaggcaaa tatcgcaaaa tgcacatacc
    12661 cgatgatcct tgtttttatg aaaaatttta ttttactcct ggagatttgg gttttgaacc
    12721 tataaataca agtttaggta agcttggagt gcttatttgt tgggatcagt ggtatcctga
    12781 agcagcaaga attatggctt taaaaggagc tgagattctt atttatccca cggcaattgg
    12841 ttggtttgat aaggataaag atgaagaaaa acaaagacag ctcaatgctt ggcttggcgt
    12901 acaaaaagga catgctatag ctaatggttt atatgtagta gctatcaata gagtaggttt
    12961 tgaaaaagat gtaagcggga tagaagaggg cattagattt tggggaaatt cttttgtttt
    13021 tggccctcaa ggtgaagaac tttgtctttt agattctcaa aacgaatgtg taaaaatcat
    13081 agaaatagat aaaaaaagaa gtgaaaatgt gcgtcgttgg tggccttttt tgcgagatag
    13141 acgcatagaa tattttgcag atttaactaa aagatttatt gattaaatca ataaatctta
    13201 tttgttttgt atattttcaa gatagctttt tatttgctct ttttcttgtt catttaaatt
    13261 tataaaactt atttctttaa gtcttgataa aagcaaatta tcttctaaaa tttcattttt
    13321 tcctatttct aaagaagtga tgacgctaga acttatgaga agtctttggg ttgcatcttt
    13381 tcttaagccc catatattat gtatggcaat attattatct gtaatttgtc ctgcataaag
    13441 cataatatgt ccaggtaaat aaagtaagct taaataagct tttccaaagc ggtttaaaaa
    13501 atcttttttt tgagaattgc taagagtgct tatatcaaaa tgattaaaag aatttttttg
    13561 tgcagctgaa tttcttggta gataaagtcc aaaagctgaa aagatatcac gagttagtaa
    13621 agaacaatct ctttcaaaat tataaccgcc ccagccataa ggcaaattta aaacttgtga
    13681 aagttgattt tttaaatt
//
LOCUS       DARGBD010000039        13424 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.039, whole genome shotgun sequence.
ACCESSION   DARGBD010000039 DARGBD010000000
VERSION     DARGBD010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13424
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.039"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..894
                     /locus_tag="SFZ04_000945"
     CDS             <1..894
                     /locus_tag="SFZ04_000945"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEG8065233.1"
                     /translation="NGATSNPAIFKNAILNSPIYKDKILKLKEKKTKDIYEELAISDI
                     QKAADKLAPLFYQKNDGFISIEIDPRLHDNTTLSLGEAKRLYSAIGKENIMIKIPATK
                     ASYEVMYELMKNGISVNATLIFSLEQSQKCFEALNAGLVEFRKNNIALKEQNTRTPQA
                     VISIFVSRFDRLLNPKAKEQNRIGILNANLAYNNIYSKNEPNIRALFASTGVKGDDLP
                     KDYYIKELLFENSVNTAPLDAIEAFKGKMHFKKPLMNFEIYTELNQIISQSEREKACN
                     DLLSDGLEQFCIAFEDILKAL"
     gene            complement(895..1317)
                     /locus_tag="SFZ04_000946"
     CDS             complement(895..1317)
                     /locus_tag="SFZ04_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HEG8065234.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(1314..4583)
                     /gene="carB"
                     /locus_tag="SFZ04_000947"
     CDS             complement(1314..4583)
                     /gene="carB"
                     /locus_tag="SFZ04_000947"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEG8065235.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDKI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDTKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVFKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNHELYMIEVNPRASRTVPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(4844..5593)
                     /gene="mreC"
                     /locus_tag="SFZ04_000948"
     CDS             complement(4844..5593)
                     /gene="mreC"
                     /locus_tag="SFZ04_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEG8065236.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGKKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(5583..6623)
                     /locus_tag="SFZ04_000949"
     CDS             complement(5583..6623)
                     /locus_tag="SFZ04_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEG8065237.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVKESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGFDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(6634..7857)
                     /gene="clpX"
                     /locus_tag="SFZ04_000950"
     CDS             complement(6634..7857)
                     /gene="clpX"
                     /locus_tag="SFZ04_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEG8065238.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSYNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(7850..8641)
                     /gene="lpxA"
                     /locus_tag="SFZ04_000951"
     CDS             complement(7850..8641)
                     /gene="lpxA"
                     /locus_tag="SFZ04_000951"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEG8065239.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVVEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGTRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(8641..9081)
                     /gene="fabZ"
                     /locus_tag="SFZ04_000952"
     CDS             complement(8641..9081)
                     /gene="fabZ"
                     /locus_tag="SFZ04_000952"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEG8065240.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            complement(9176..10267)
                     /locus_tag="SFZ04_000953"
     CDS             complement(9176..10267)
                     /locus_tag="SFZ04_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEG8065241.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEG
                     FYRSTKDEIVLVEFWRFNAFFKNKWKNFEDFLKRPLSVQAEIKWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQEVLVKI"
     gene            complement(10267..10722)
                     /gene="bcp"
                     /locus_tag="SFZ04_000954"
     CDS             complement(10267..10722)
                     /gene="bcp"
                     /locus_tag="SFZ04_000954"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEG8065242.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GAWGLKKNYGKEYEGLIRSTFVIDEIGRIAQIYSNVRVKDHALKVLESL"
     gene            complement(10719..10925)
                     /locus_tag="SFZ04_000955"
     CDS             complement(10719..10925)
                     /locus_tag="SFZ04_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEG8065243.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITKLLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKAIK"
     gene            11101..12015
                     /gene="ilvE"
                     /locus_tag="SFZ04_000956"
     CDS             11101..12015
                     /gene="ilvE"
                     /locus_tag="SFZ04_000956"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HEG8065244.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            12028..13116
                     /locus_tag="SFZ04_000957"
     CDS             12028..13116
                     /locus_tag="SFZ04_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEG8065245.1"
                     /translation="MPADLNDYFNKKNRNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FIYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSSANIN"
     gene            13129..>13424
                     /locus_tag="SFZ04_000958"
     CDS             13129..>13424
                     /locus_tag="SFZ04_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEG8065246.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNIT"
BASE COUNT         4505 a         2538 c         1715 g         4666 t
ORIGIN      
        1 aatggcgcta cttcaaatcc tgctattttt aaaaatgcta ttttaaattc tccaatttat
       61 aaagataaaa ttcttaaatt aaaagaaaaa aaaacaaaag atatttatga agaattggca
      121 atttctgata ttcaaaaagc agctgataaa ttagctcctc ttttttatca aaaaaatgat
      181 ggatttataa gtattgaaat agatccaaga cttcatgata acacaactct tagtttaggt
      241 gaagctaaaa gactttatag tgctattggc aaagaaaata taatgattaa aattccagct
      301 acaaaagctt cttatgaagt aatgtatgaa cttatgaaaa atggtattag cgtcaatgct
      361 accttaattt tttctcttga acaaagtcaa aaatgttttg aagctttaaa tgcaggttta
      421 gtcgaattta gaaaaaacaa tatagcctta aaagaacaaa acactagaac accacaagct
      481 gttataagta tttttgtaag tcgttttgat agacttttaa atcctaaggc taaggagcaa
      541 aatcgtattg gaattttaaa tgcaaattta gcttataaca atatctactc aaaaaatgaa
      601 cctaatattc gcgccttgtt tgcaagcacc ggagttaaag gagatgatct gccaaaagac
      661 tattatatca aagaacttct ttttgagaat tctgttaata ctgctcctct tgatgcaata
      721 gaggcattta aaggaaaaat gcattttaaa aaacctttaa tgaattttga aatttataca
      781 gaacttaatc aaatcatttc tcaaagtgaa cgagaaaaag cttgcaatga tttattaagt
      841 gatggcctag agcaattttg tattgctttt gaagatattt taaaagctct ttaattaacg
      901 tatttttatc attttattct ttgaaagttt taatattttt gatgggatat tttcgaaaaa
      961 tttctcatca agtattatat cggcaacact tctagcccat tcttcatcaa attcttttcc
     1021 atgcttgttt gccgaagatg aataaaaata gccattttta cttaaaaaat tcgcatgttt
     1081 acactctttc acaatacgaa tggcctgatt attgggataa ataaaagttg tttttttaga
     1141 acgacgtact aaatttttaa aagattttgg aattcttgct aaacttttta actcgcaaaa
     1201 tttcgcagaa gtgattaagc aaggctgatt tttatctcta ccttttaaag cattaatctc
     1261 ttctaaattt ttacttaaaa atcctaccgt agtatctgtt tgagctaaat aaatcaagat
     1321 ttaagccact cttgcaaact ctttacatct aggcaagatt tactctgtat agctttaatc
     1381 gattttgcac ctgctaaagc tgatcgtaaa tttgtaaaat aaggtatttt aaaacgaata
     1441 atattttcac gaattttttt cgtatcgcct ttaaaactgt gactatcgct tgtattgata
     1501 actaagtgaa tttccccatt tttcaattta tcttcaacat tggggcgtcc ttctgaaatt
     1561 ttatgtacaa gttcgcactc aaaaccactt tctaaaattt ccttgcaagt tccccctgtt
     1621 gccataagct taaagccaag ctttacatat tctgcagcga tttttttggt atatttttta
     1681 tccttatctt ttaaggagat aaataccacg ccttgctctg gaagatgatt aaacgatgca
     1741 atttgacttt tcgcataaga atttgcaaaa tccttgctta tacccataac ttcacccgtt
     1801 gaacgcattt cagggcctaa ttctaaatca cttccactaa gttttgcaaa tggaaatact
     1861 gcttctttca cgctcatata ttttggagtt ttagggcgta aaattttagt atcaaaatta
     1921 accactttaa aagtatcata aaattttaaa gcttctttta aatttccttg ccacatcaca
     1981 cgcgttgcca cttttgctaa aggaataccc gtagctttac taacaaaagg tacggtacga
     2041 ctagctctag gatttacctc tatcatataa agctcatgat tatgtaaagc aaattgtata
     2101 tttaaaagcc ctacaactcc caaatttaaa gcaatatctg cggttttttg tgcaataaat
     2161 tcttgcattt tttcatcgat attgcaaggc ggcaaagaac aagcactgtc acctgaatga
     2221 attcctgctt cttctatgtg ctccataatt cctgcaacat aaacatcttt gccatcacaa
     2281 atcgcatcaa catcaatttc tgtagcattg tctaaaaact gatcgatcaa aacagggctt
     2341 ttatcgctta catccacagc ttcttgcata tagagtctca gttcagcctc atcatttacc
     2401 acgcgcatcg cacgcccacc taaaacataa cttggtctta caagcacagg ataccctata
     2461 tcactagcct taaaaaccgc ttcttctacg cttgttgcag tagaattttt tggctgattg
     2521 atacctagct ttgtaataaa ttcggcaaat ttctttctat cttctgccat atcaattact
     2581 cttgagctag tacctataat cttagctcca aaagcactta aacgcttagc aaatttcaaa
     2641 ggagtttgtc caccaaaatg cacaatcact ccatcaggtt tttcacgctc aatcaccgct
     2701 cttaaatgtt cgaaatcaat aggctcgaaa tacaaaatat cacttgtatc atagtcagtc
     2761 gaaacggttt caggattaca attatacata atagttttaa tacccatatc tttaagcgca
     2821 aaagaagcat gtacgcaagc atagtcaaat tctatacctt gtcctatgcg gtttggcccc
     2881 ccacctataa tcatcacttt tttttctttt ttatccttag tatcgttttt actttgagtg
     2941 agttcgctta cattgatact tgaataaaga taaggagtta aagcttcaaa ttcacccgca
     3001 caagtatcca cttcactaaa ttctgcgatg attttttgct tcattcttgc ataataaata
     3061 tcattttggc ttaattctaa attatctttc aaatttacaa gcaaagctat cattttgtct
     3121 gaaaagccca tagtttttgc ttttctcaaa agagctttat tgtttaaaat atccatatca
     3181 atttgctctt caaaatctac aatttcttta atctgtgtta aaaaccaagg atctatttta
     3241 caaagctcat aaagttcttc tacgctaaaa ccttccctaa aagcttgagc aacataaagt
     3301 aaacgctttt cattggcatt gcgaatttta aaaacaagat catttctatc ttcaaatttt
     3361 actctatcaa aaccacttaa agaacgctca agcgaacaaa gtgctttttg tatactttct
     3421 ttaaaagtgc gtcctatagc catcacctca cccacacttt tcatagctgt acctaaagtt
     3481 gtgtttgctc ctggaaattt ttcaaaggta aagcgaggaa tttttgttac aatataatca
     3541 atcacaggct caaaagatgc aggagttcct gtaatatcat ttttaatctc atctaaacta
     3601 aagcctactg ccaaaagtgt tgcaaccttt gctataggat agcccgttgc cttagaagct
     3661 aaagcacttg atcttgaaac tcttggattc atttctataa ctatcattct tccatttttt
     3721 gggttgatag caaactgcac attacttccg cctgtatcta cgccaatttc acgcaaaata
     3781 gcaaaagaag cattacgcat aacttgatat tctttatccg tcaaagttaa tgctggagct
     3841 attgtaatac tatctcctgt atgaactccc ataggatcga tattttctat gctacaaact
     3901 atgatacaat tatccgctct atcgcgtata acttccattt catattcttt ccaacctaac
     3961 aaactttctt caatcaaaat ttcatggata ggtgataaag ctaaagcagt attggcaagt
     4021 tctttaaatt cgtccatatt gtaaaccacg ccacttccag caccccctaa agtataagaa
     4081 gcacggatca tcaaaggaaa gccaatttta tctacagctt ttaaagcttc atcataatta
     4141 tacgcataca tcgattttgg caaatccatg ccaatttttt tcatacattc tttaaaaacc
     4201 tgacgatctt cgcctttttt aatcgcctca ggatttgcgc ctaaaaattt cacatctcct
     4261 aaaagtccgc tttcataaac ttccatagca acatttaacg ctacttgtcc acccatagtt
     4321 ggcaaaattg catcaatttt ttctttttta ataatactta aaatactttc ttttgttatg
     4381 ggttctatat aagtcgcatc tgcaaattcg ggatctgtca tgatggttgc aggatttgag
     4441 ttgattaata ctacacgata tcctaattct tttaaagtct ttgcggcttg agttccagaa
     4501 taatcaaatt cacaagcttg tcctatcaca ataggaccac ttcctataag taaaatgctt
     4561 ttaatatctg ttcgttttgg cataaatttt cctaagagca taaatttggg ctgattataa
     4621 caaaaattag ttttataaac tttgaaatta tcgatataat tttaaaaaat aaacactctg
     4681 cttttgatct aggaaataat acataaagaa atttaagatt ttttataaaa ttctcattca
     4741 attataaaca tttatttgat aatttaacaa aatttttagc attaaacaaa gttataataa
     4801 ttagcaaaaa tatagaaaat ttttaaaaag tctaatcctt gacttataaa ttatctacta
     4861 catataaata agcaggaata ctaatcttaa cataaggctt tacttctaca ctttgataca
     4921 tatcttcatc attaactcta ttcacaatac caacaggtat atctgaaaag aaaatattat
     4981 caagtccact tgttaaaatt tcatctccgg tattaatttt tgcccatttt ggaataaatt
     5041 taaccacaat cctgccatct tcaccctgga ttaaacctgg agctttggat tttcctatat
     5101 aaacagaaaa aacacactga tcatcacctt gtaagagagc cattgctcta ccatttttat
     5161 taatagctat acctgcagta tatccttgat atattaaacc acgattttta ccaactggaa
     5221 ttttgctcca atctaaccat aattttttat aatcattcaa ttgaacgtaa gaaataactc
     5281 tagttaaaga aacttgaggt aaatattttg tagaattttg atcctctaaa atacgattta
     5341 attgatttgc aaaactagtt acctttacag caatatcttc taattcttta tttctagctt
     5401 ttagttgctg aatttgattt gcttgattaa agtgttctga aatttttttt cccaaataat
     5461 ctttaatatt ataaaaatta cctataacaa aatcattaac acggagaaca ttttgcttga
     5521 taagtcctcc ataataaaaa gatataaaaa ccaaaaaggc taagacaaga acataaaaaa
     5581 tcttattctt cattggttaa ttgttgcaat aatgaaattt cctctaaagc tttacccgtt
     5641 ccttttgcta cagctaaaag cggttcatct gcgatataaa ctggcaaacg tacaatttca
     5701 cttaagtatt tatcaaaacc acgaatcaat gctccaccac ctgttaaaac tacaccattt
     5761 tctactatat cacttgctaa atcaggcggc atcatttcaa gaaccatttt taaagcatca
     5821 gcaatttctt ttaaatactc acgcattgct tctcttacat cttcacttgt aagttcaata
     5881 cgacttaaaa gtccacttac ttgatcgcgt ccttttacca ccatagaaag ttcttttgga
     5941 agttgtattg ctgaacctat ggtgattttg atctcttcgc ctgttctttc acctatgata
     6001 agattgtatt tttcttttac ataattaact atactcatat caagcttatc tccagctgta
     6061 cgaatagact ttgaaatcac aagtccaccc aaagaaatca ctccgatctc agtagttcca
     6121 ccccctatat ctactaccaa atttccttta ggttcttgta taggtaaact tgcaccaata
     6181 gctgctgcca taggctcttc gatcaaaaat acctctcttg cacctgcact taaagcactt
     6241 tcttttaccg cttttctttc tacttgagtt aaaccataag gaacagaaat aataattcta
     6301 gggcgtaaaa aactttttct acgatgtgtt ttttctataa aatagcggat cattttttca
     6361 gtcatatcaa aatctgcaat cacgccatct ttcataggac gaatagcttc gatgttacct
     6421 ggagtttttc ccaccatatc tttagcttct ttacctacgg ctaaaatttt tgctttggaa
     6481 ccataccttt ctctttcaac tgccacaaca gaaggctcgt ttatcactat acccttatct
     6541 tttaccaaaa ctagcgtatt agctgttcct aaatcaatcc ccatatcact agaaaaaaat
     6601 cctataagtt gatctaatat catttctatc cttttaactt atttttcttt ttattaataa
     6661 tgcctttgca ttgtctttaa caacttcttt ggttattaca atatcatagt ttttatactc
     6721 tggtaactca aacattaaat ctaccatcat ttcttctata atacttctaa gccccctagc
     6781 ccctgttttt ctctccaatg caagctgtgc gatagctctt agagcatctt cttcaaattt
     6841 taaatttacc ccatcaatag caaaaagctt ttgatattgc ttaataatgg catttttagg
     6901 ttcagttaaa attcttacca tatcttcttc attaagctca tttaaagatg caatcacatg
     6961 caaacgacct ataagctcag gaatcaaacc aaaatgcacc aaatcatcag gttcaatttt
     7021 ctcaagtaaa gctttatttt cttcttttgc atcatcaaaa aaacctacaa ctttatctcc
     7081 aagttttctt tttaagatag tttccaaacc atcaaaagct ccaccacaaa caaataaaat
     7141 atttgaagtg tcaatttgta taaactcttg atttggatgt tttctccccc cctttggtgg
     7201 aatatttacc aaacttcctt cgataatctt aagtaaagct tgttgcacac cctctccact
     7261 tacatcacga gtaatagaac gattttcact cattctggca attttatcaa tctcatcaat
     7321 aaaaactata cctttttgag ctctttgcac atctccatct gcagcttgta aaagacgtgt
     7381 taaaatattt tctacatcct cacctacata tcctgcttca gttaaagaag ttgcatcaca
     7441 aattgctata ggtacatcta aaaatttagc taaagtttgc gccaataaag tttttccact
     7501 tcctgttggc ccaacaagta aaatatttga cttaaaaagc tctgtatcat catcttgaag
     7561 ttcagcttta aaaagtcttt tataatgatt gtatactcca acactaaaaa cttttttagc
     7621 tctatcttgt cctatgacat aacgatctaa ataagctttt aattcttttg gagtgatatc
     7681 tttaaattct gtattataac tttgtttagg ttctttaaat tctttttctt ctccataaat
     7741 aatactataa gcaccttcaa cgcaatattc acaaataaaa gcatcatcat tttcatttgc
     7801 taaaattctt ctttgtggat tctccacttc attgcaaaaa ctacattttc taggcattat
     7861 ttttacccct atagacagga attccacgct ttgtttctaa tataaaatgg cacatttttt
     7921 taacattttc actttcttga ttttcaagca aatttttagc attttctttt aaatctcctt
     7981 gtctaaataa agttttaaaa gctctactaa gtctatctac ttcatcttta tcaaaacgac
     8041 gacgagtacc tactaaattt aaacttctaa tacttgcacg atttccttct gctaaacaaa
     8101 acggtactat atcctgagaa agtgcacttg ctcctgctat catacaaccc tcacctactt
     8161 tgacaaattg atgaataggt gtaagcccgc ctacaaccgt aaaatctcca agctctacat
     8221 gtcctgccaa agttgcatta ttagctaaaa taatattatt acctaaaaga caatcatgag
     8281 caatatgaca ataagccata ataaaagcat tatcgcctat acgagtaaaa ccatctcctt
     8341 tagctgtacc tgaatttatc gttgcaaatt ctctaatagt tgcatttttc cctataacaa
     8401 caccgctttt ttgctcttct ttataagata tgtcctgagg aatatcgcct actatagcat
     8461 aagaaaatac acgagaatga tcacctatag ttgtatctga aagaattcga gcaccttgtt
     8521 tgatgacaac attattacct attttagcat ctttgcttac ataagcataa gcttctacta
     8581 caacatcgtc accaagttgt gcaccctctt caatcaccgc acttggatga atttttttca
     8641 ttatttatcc actatcatag ctttaagctc ggcctctgca actaaatttc catctacaaa
     8701 agcttgccct ttaaaaatcc acatattacc acgattttta accacgctca tttcataatc
     8761 aagcctatct ccaggacgca caggatttct aaattttgct ccatctatgc ctgtgaaata
     8821 aactacttta ctttttggat ccactttatc ttccatactt tcaaaagcta aaactccacc
     8881 tgtttgagcc ataccttcta aaatcaaaac tccaggataa ataggatgcc ctggaaaatg
     8941 tcccataaaa acatgatcac ttatactgat gtttttatat cctcgcacca cttctttaac
     9001 ttttaattct gtaattttat ctactagtaa aaaaggataa cggtgtggta aaatttcttg
     9061 aatttgcatt acatctatca ttattaaatt aaccttgaaa acaattaaaa attttattat
     9121 ataaaaaaat cattaaaaat tatattaaca aaaaaagttt ttcttaataa atttcttaaa
     9181 tttttacaag cacctcttga ttatcatgat aaatttcact ttttgctatc acttcatatc
     9241 ttgaaggtaa aatattttcg aggatgataa taggactaag attataagtt ccaaacaatt
     9301 tattacgcca tttaatttct gcttgaacac ttaaaggtct ttttaaaaaa tcttcaaaat
     9361 ttttccattt gtttttaaaa aatgcattaa aacgccaaaa ttccactaaa actatttcat
     9421 ctttagtact tctataaaag ccttctttta aattttgttt taaattttcc tcatccaaag
     9481 aaaatcttgt ataagcgttt ttaaaatgcg aataaaataa aatatgagat ttaacgggct
     9541 ttttatctaa ttttatcaaa gcacttaaaa gacgataatt taaaaatttc tctcttaaaa
     9601 tttcaaattt tatacctttt ttttcccata aaactacttt tttataaaga gctattcttg
     9661 cttctatact tgcaggtaaa atttgcttat ttacaggaga cattaattca tcaataaaat
     9721 tcttatcttg tttttgtttt ttaagcccat aaatgcagcc gcaatagttt tgatgataaa
     9781 gcatttcctt ttttgctaaa gcaaactgtc tttgagtacc gccattttta cgaaaatcag
     9841 gagctaaaaa ctctactcca taaggctcac attctttttg taaagcattt tttaactgtt
     9901 ctaaatcttt tttagggctg gttaaaagcg tagtagtaag ctttttttct cctattttag
     9961 cagcaaattt aacactagat cccattctta catcaaagca aatttcacac cttgcaccct
    10021 tttcaggctc atcttcataa ccacgcacag cattaagcca tttttcatac tcatactcac
    10081 ctttataaag cttaatacca agtttatcac aagatctttt tacatctaaa aatcttagtt
    10141 cgtattcgct taagggatgg atatttggat cataaaagta tcctataatt ttttcatcag
    10201 gataagtctt tctaagttct tcaataaaat aatgactatc cacactgcaa caaatatgca
    10261 ccaacattaa agactttcaa gcacttttaa agcatgatct tttacacgaa cattactata
    10321 aatttgagca atcctaccta tttcatcaat aacaaaagta gagcgaataa gaccttcgta
    10381 ttcttttccg taattttttt taagccccca agctccataa gctttagcaa cttctttttc
    10441 actatcgcta agtaaaatat gttttaaatc aaatttagag ataaattttt catgacttgc
    10501 cacgctatca ggactgatac caataatcac tgcattttta ccaccaaatt tatcataatt
    10561 tgcgctaaaa tcacaagcct ctgtagtgca acctggagta ttatcttttg gataaaaata
    10621 caaaatcacc tttttgccaa taaaatcttt taatgctatt tttaccccat cttgatttaa
    10681 aagctcaaac tgaggtgctt tatctcctat gtttaaactc atttaattgc ctttgctttg
    10741 atagcttcaa cgctttctcc gccaaagcct atgtcataat tttctacatc ttctaaaacc
    10801 accacaactc tttctttact tttattatat ttcgtgctta aaagtttggt aatatcagct
    10861 ataagctccg ctttttgttc cttgcttaaa gacggctttg ctaatttaat atttactaat
    10921 ggcataattt ctccttttta acgataattt ttcataatta tttcaaaaaa tacctaatat
    10981 tttttttaac aaaaaacctt aatttaataa aagcttattg ttagtatatt tttgataaaa
    11041 tcccgattta ttcttaaaat aatatttttt aagaaataaa caactataaa aggtaaaaaa
    11101 atgatctcag cagataaaat ttggatggat ggaaaattag ttgattttaa agatgcaact
    11161 ttgcactttt taacccattc tttgcattat ggcaatgctg tttttgaagg aactagagcc
    11221 tataaaacag ataaaggctt agcaattttc agacttgaag atcacaccaa aagactttta
    11281 gagtctgcaa aaattactct tttaaattgt cctttttctc aaaaagagct tgaaaatgca
    11341 caaattgaac tcttaaaagc aaacaatttt aaaagcaatg tctatatccg ccctttgatt
    11401 ttcttaggcg atggagttat gggactttat catataaaag ctcctgtaag agttggaatt
    11461 gcggcttggg aatggggtgc ttaccttgga gaagaaggtt tagaaaaagg cataaaagta
    11521 aaaatttcgt cttttgcaag aaatagtgtt aaatcatgca tgggaaaagc taaagcaagc
    11581 gcgaattacc ttaactctca aattgcaaaa tttgaagcta ttgaagcagg ctatgaagaa
    11641 gctttaatgc ttgatgaaga aggttttatc gcagaaggaa caggagaatg tttctttatt
    11701 gtaaaagatg gggttttaat cacacctcca aatgattttt ctttaaaaag cattactcaa
    11761 gatacagtgc ttaaaatcgc tcacgatctt ggtatcaccg tgcttcgcca aagaatttca
    11821 agagatgaag tttatactgc tgatgaagca ttttttaccg gaacagccgc tgaaatcaca
    11881 cctattaaca acattgatgc aagaataata ggaaatggtt taagaggatc tgtaactaaa
    11941 aaacttcaag atgcttattt tgatgtagtt tatggacgca atgaaaaata cgcatctatg
    12001 ctaacttata tttaaaaaag gaaataaatg ccagctgatt taaatgatta tttcaataaa
    12061 aaaaatagaa attctaacaa taacggaaac aacaaccgtc aaaatttcaa tttcaaagca
    12121 ccagaattta attttaaagg ttttggaaaa ttctctccat ttatttatgg ggtgattatt
    12181 attatcttat ttttaatcgt tgcaaaacct tttatggtga taaattctgg ggaaatggga
    12241 attaaatcaa caacaggtaa atatgaccca aatccattag aaccaggact tcactttttc
    12301 ttaccttttg tacaaaaaat aaccataatc gatactagag taagacaaat caactatgct
    12361 tctatagagg gaagtaatga aaatttatct tcaggttcag gtgttattaa taaaaatagt
    12421 atttctgtgc ttgactctcg tggattgcct gtatctattg atgttacagt acaataccgc
    12481 ttaaatcctc tgcaagttcc tcaaactata gctacttgga gcttaaattg ggaaaataaa
    12541 attatcgatc cagttgttcg tgatgtagtg cgaagtgttg taggaaaata tacagccgaa
    12601 gaacttccta ctaatcgtaa tacaatagcc gctcaaatag aagaaggtat aagaaaaacc
    12661 atagaagccc aaccaaacga acctgtagaa cttcgcgctg tacaacttag agaaattatt
    12721 ttaccttcaa aagtaaaaga acaaatcgaa cgcgtacaaa ttgcaaaaca agaggctgaa
    12781 agaactaaat atgaagtaga aagagctaat caagaagcct taaaaaaagc tgctttagct
    12841 gaaggggaag caaatgcaac cataatcagc gccaaaggta aagctatggc tgttaagata
    12901 gaagcagatg cacaagctta ttctaataaa gaaatcgcaa acagcttaaa cacccctttg
    12961 ctaaatttaa aacaaattga aactcaaaaa gaatttaatg aagccttaaa agtcaatcaa
    13021 gatgctaaaa ttttcttaac tccaggtgga gcagtgccaa acatttgggt tgataccaaa
    13081 gatgctaaaa agcaaagttc tgccaacata aactaaaagg atacgcaagt ggagaaacta
    13141 agagaaattg tgctttttta cactactcat ttatatttag tagattatat gctgatttta
    13201 ttagtttttt ttctcttcac ttgtgtttta cttctttgcg tatttttacg ccatagacct
    13261 atagcagcac tttttattat tgcatttgat attattattt gttttttagt ttatatctat
    13321 gggtataaac taatagacaa tgaagtaaga actcgaaaaa tcgctattac agatcaaaaa
    13381 atgatacaaa gctcaaatga tttaattgtt gattttaaca ttac
//
LOCUS       DARGBD010000040        13355 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.040, whole genome shotgun sequence.
ACCESSION   DARGBD010000040 DARGBD010000000
VERSION     DARGBD010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13355
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.040"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            42..707
                     /gene="dccR"
                     /locus_tag="SFZ04_000959"
     CDS             42..707
                     /gene="dccR"
                     /locus_tag="SFZ04_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HEG8065247.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            700..1890
                     /gene="dccS"
                     /locus_tag="SFZ04_000960"
     CDS             700..1890
                     /gene="dccS"
                     /locus_tag="SFZ04_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HEG8065248.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGTTL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     SFAIMAFCILGLISYILVKIALKPLEDKISILNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNTKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(1933..3570)
                     /gene="groL"
                     /locus_tag="SFZ04_000961"
     CDS             complement(1933..3570)
                     /gene="groL"
                     /locus_tag="SFZ04_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEG8065249.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(3592..3852)
                     /gene="groES"
                     /locus_tag="SFZ04_000962"
     CDS             complement(3592..3852)
                     /gene="groES"
                     /locus_tag="SFZ04_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEG8065250.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            4014..6554
                     /locus_tag="SFZ04_000963"
     CDS             4014..6554
                     /locus_tag="SFZ04_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065251.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLQGALSPFKLGFDLDYLISLKQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGRGYLLGSNVLLNVRMYNYSPIALNLDAKNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDMSKNILSTDFNLNIPSLAKLEK
                     LTKTRLNGSLGVIGETSVVNNALSSLNAQVIGLGGEVKASLKHNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIELPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLNAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGVVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGKLQSTFKDNLLLADLNGVDLSSLAQGLD
                     FMDIYQGKADMKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITDDVYRTA
                     NAKALIKKENIKLDLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKNTGNKVDKAVNKLLNKIF"
     gene            6563..7174
                     /locus_tag="SFZ04_000964"
     CDS             6563..7174
                     /locus_tag="SFZ04_000964"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEG8065252.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLTAKHRPNLGDSIAVNGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGILEKI
                     QKDENGVDFHITLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            7138..7818
                     /locus_tag="SFZ04_000965"
     CDS             7138..7818
                     /locus_tag="SFZ04_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HEG8065253.1"
                     /translation="MGRSGKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNTALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDNKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            7820..8023
                     /locus_tag="SFZ04_000966"
     CDS             7820..8023
                     /locus_tag="SFZ04_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065254.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEISEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(8020..9180)
                     /locus_tag="SFZ04_000967"
     CDS             complement(8020..9180)
                     /locus_tag="SFZ04_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG8065255.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            9302..10027
                     /locus_tag="SFZ04_000968"
     CDS             9302..10027
                     /locus_tag="SFZ04_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HEG8065256.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDLR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPISVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            10030..11412
                     /locus_tag="SFZ04_000969"
     CDS             10030..11412
                     /locus_tag="SFZ04_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG8065257.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            11416..12222
                     /locus_tag="SFZ04_000970"
     CDS             11416..12222
                     /locus_tag="SFZ04_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEG8065258.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(12166..13350)
                     /locus_tag="SFZ04_000971"
     CDS             complement(12166..13350)
                     /locus_tag="SFZ04_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEG8065259.1"
                     /translation="MFNILLEYNNFLNFKNQKHYLIDNALLTHQYIKYNKKNKKYWVL
                     KLQTENFTFYTTSFKDLNLSKNQFLSLRIITHNINFKDYLSKSFYAPSYDFEKLKEKE
                     YNPIISYFLNQHTNEKIKEFYGALFFALPISLELRNDVNYYGIAHLIAISGYHIGLLF
                     SLIFFILAPIYSFFQKRYFPYRNLRLDLSILIFALLLAYACLIGFVPSFVRSLIMAFW
                     IFYLLCKNIKIINFVTLFCSILLCISLYPRLLFSIGFLFSILGVFYIFLYMHHFANKF
                     NNLINIILLNIWTFFAMVLPVLYFFPLISYQQILGIILSGIFVIFYPLVLFLHLINYG
                     DLLNFILDEFFKFKIYGTNIHIPFWIFISYLIASLISVRFKYLAFLCIFANFIPFIMI
                     VI"
BASE COUNT         4649 a         1771 c         2193 g         4742 t
ORIGIN      
        1 gatatatatt taagagattt gaagttagaa agatttaaat tatggctgct aaaattttac
       61 ttttagaaga tgatttgagc ttgagtgaga tcattgaaga gtttttaaac gatgagggat
      121 atgaagtatt tttatgcgat aatgcgcaag aagctttaga tatggcttat gaaagatatt
      181 ttgatctttg gattttagat gtaaaagttc ctttaggaga tggattttca ttacttaaag
      241 aattaagaaa aagcggaaag caaactccag caattttcat gacttcttta aacacaacaa
      301 acgatttaaa acaaggcttt gacgcaggtt gtgatgatta tataaaaaaa ccttttgaac
      361 ttgccgagtt atctatcagg gttaaagctt tgcttaaaag agctttttca cataaaaatg
      421 aagattttga agatttagga gatggattta gatttgaatt tactacacaa attctttacc
      481 ataataataa agccttgact ttaccgagta aagaaattaa gcttttgtct ttattactta
      541 aaaataaaaa caacttttta agtacagaga gaatttttga agaactctgg gattatgatg
      601 aggagcctag tgagctaagt ttaagggctt atgtgaaaaa tttacgtaaa attttaggaa
      661 aagaaaaaat tataaatcaa agaggcaggg gatattgcta tggctaaaaa agtcattagg
      721 caaattttat taatctacct aacaactaca ggtatttttt taacgatttt ttttgcatta
      781 tggtatcaaa aattatatga agaattagtt gttttaaagg gtaccacttt gagagaaaat
      841 catagaaaca ttgttataag catcttaaat tctcgtttta cccctataga tataagtgca
      901 aaaaatattg ctcaaagcac agcactaaaa tttgctatat ttgatgctaa aaagattgtt
      961 tttagtaata tagattttga tttaagaaag gcaaagatag agcttaaagg tagaggtatt
     1021 tgtgataata aggttttttt ccttgctcct atgagtgcag atcattattt tttaagacat
     1081 gctagcaatg aagaagtaaa tactaacgat ggtttgcaaa ttttaataca gggtgaagat
     1141 gttggcaaag atcttttttg gattagaacg aaagttttta gttttgctat tatggctttt
     1201 tgcatattgg gtttaatatc ttatatttta gtaaaaattg ctctaaagcc tttggaggat
     1261 aaaatcagca tactaaatcg ttttattaaa gattcaactc atgaactcaa taccccatta
     1321 agtgttattt tgatgagtat agaacaactt gagcatcaaa atttaggaga taatactaaa
     1381 tttacaagga ttaagcttgc tgcaaaaagt ttgtctcaag tgtactctga tcttgttttt
     1441 tataatttcc ctaatacctt agaaacagaa aaacaaaaat ttgatttaag aatactactt
     1501 gaagaaagat tggaatattt taaagtattt tttgagcaaa aaaaaattac actaaagctt
     1561 gatttaaatc aagcaaatat ttttgctcct aaaagtcaaa tttctaaatt gattgataat
     1621 cttataagca atgctattaa atacaataaa aaaggtggag taatttctat aattttaaaa
     1681 gccaattttt taagtattgc ggatacaggt tgtggaattt caaagtcaaa tttaaatcat
     1741 atttttgata gatatacaag atttaatacc gatcaaggag gatttggtat agggctttct
     1801 ttggtaaaaa aagtttgtga tgataatgat attaagatta tttgcgaatc tgtagaaaat
     1861 caagggagtg tttttaaatt aaattggtaa tcagcaagga aaatccttgc tgataagagg
     1921 ttagagtaga tattacatca ttccgcccat gccacccatt cctcccatac cgctcatatc
     1981 tggcatagta ggtttatctt ctttaatttc actaattgtt gcttctgtgg ttaaaagcat
     2041 actagctaca gaaactgcat tgagtaaagc tactctttct actttaacag gatcgataat
     2101 tccactttca agcatattaa catattcacc ttttgcagca tcaaatcctg tgttttcatc
     2161 tttagcattt tctacgctat ttacaaccac acctgcatca aatcctgcat tttcagcaat
     2221 ttgtcttaaa ggtgctctta aagctctttc aacgatagct gcgccaattg cttcatcacc
     2281 ctgtaaatca agtttgattt tagcttttgc tttgataagc gctgcaccac caccgattac
     2341 tataccttct tcaactgctg ctttagtagc gcttaaagca tcgtcaacgc gatctttttt
     2401 ctctttcatt tcagtttcag ttgctgcacc tactttaata actgcaacac caccacttaa
     2461 ttttgcaagt ctttcttgta atttttctct gtcataatct gaagttgttt cagcaatttg
     2521 tgctttgatt tgattgactc tcgcatcaat atttgctttt tcgcctgcac catttactat
     2581 ggttgtattg tctttatcga tgattacact agaagcttgt ccaagatctt gtatagtcgc
     2641 actttcaaga gttcttccaa gttcttcaga aatcacttct ccacctgtta aaatcgctat
     2701 atcttcaagc atagcttttc ttctatcgcc aaaacctgga gctttcactg ctgaaatatt
     2761 aagaacaccg cgaagtttat ttacaaccaa agttgcaagc gcttcacctt caatatcttc
     2821 agcgataatt aaaagtggtt tgcctgtttt ttgaatttgt tctaaaaccg gtaataaatc
     2881 ttttaaattt gtaatttttt tatcaaaaag caggatataa gggcttgaaa gctctactgt
     2941 cattttttct gcattagtga taaaataagg gcttaaataa cctctgtcaa attgcatacc
     3001 ttcaactaca tttaattcat cattgattga ttttgcctct tcaacagtga taacaccatc
     3061 tttgcccact ttttccatag catcagcgat taaatttccg attttttcat cagagttggc
     3121 tgaaattgta gcaacttgtg caatttcttt tttatctttt acttcgcgag aaagtttttt
     3181 aagttctgct actatagctt cgcaagcttt atccataccg cgttttactt cgataggatt
     3241 tgcacctgct gtgatatttc ttaaaccttc tttgaaaatt gcatgagcta aaaccgttgc
     3301 agtagttgtt ccatcgcctg cttgatcagc tgttttactc gctacttctc ttacgagtga
     3361 agcacccata ttttcaagac tatctttaag ctctacttct ttagcaacac ttacgccatc
     3421 tttagtaatg cttggagcac caaagctttt ttggattaaa acattgcgtc ctcttggccc
     3481 catagttact tttaccgcgt cattaagttt tttaacgccc tcataaagtt tatttcttgc
     3541 ttcatctgaa aaaataattt cttttgccat tttttatcct tattttataa attattttaa
     3601 aattcctaag atatcatcta aatttaaaac taaatattca ttattatcaa gtttaatttc
     3661 tgttccaccg tatttagcaa acacgatttt atcaccattt gcaatatcag tgatttcttt
     3721 acttactgct actacttcac ccattaaagg cttttcttta gcattatctg gtataattat
     3781 gcctgaggct gttgttttag tttcttctac gcgtttgact agaacacgct ttcctaaagg
     3841 ttgaaaattc atttttgtcc atccttaaaa atattgattt tagcactctt ttatttagag
     3901 tgataatatc atactataaa aaatgaattt tgtcaatact ttaaattaaa atatttataa
     3961 aagtttagtt ttatagacta aagttatttt ataaaataaa ctaaaggata aaaatgaaaa
     4021 agatttttta tggagttata gcttttgttg ttgtgctttt gattgctatt tataccatac
     4081 ttttcacaag ttttggtaat aatatagtgg caaatatagc gcaaaaaaag atcaaagaaa
     4141 gtgcgggatt agatgtaaat atcacgcatt ttaatttacg tttttcaagc cttgaattgc
     4201 aagcaaatat cgcaaatatg gcagatttta atcttcaggg agctttgagt ccttttaagc
     4261 ttggatttga tcttgactat cttatttctt taaagcaaaa ttatgctaaa aatttaggtt
     4321 taaatttaaa tcaaaacctt tcttttggcg gtaaaattca aggcaaggca agtgatttta
     4381 ctttagatgg aaggggttac ttactaggtt caaatgtact tttaaatgtg agaatgtata
     4441 attacagccc tatcgcttta aatttagatg caaaaaatct taagatagaa gaaatacttc
     4501 atcttttatc ttatcctagt tatgctaaag gttttttaaa tgctcaggca aaaatttcag
     4561 cacagaattt aaaacctgat ggaaatatta tcataaaact tgatacaagc tatataaact
     4621 acgaggcgat aaaaaaagat ttttctttag acttgccttt aaattctaat cctaaagcag
     4681 aaattttagc caatgttaaa gaagataaga tttatgctgt aagtaaaatt tacaatgatt
     4741 atcttaactt acaaacccaa aaaactcttt atgatatgag taagaatatt ttaagtactg
     4801 attttaattt aaatattcct tctcttgcaa agcttgaaaa acttacaaaa actagattaa
     4861 atggtagttt gggcgtgata ggcgaaacaa gtgttgtaaa taatgcctta tcaagtttaa
     4921 atgctcaagt tatcggactt ggtggagagg taaaggcaag tttgaaacat aataaaattt
     4981 ttgcagatat taatgaagca agtttggaaa aattattagc tcttgcagga tatggagctt
     5041 tagtttctgg aaatttaaat gctaaacttt taaatgcgga tttggatttt tctaatttcg
     5101 atcttgaggc aaaaataaac aatgcaaaga ttaacaccaa tgagcttaaa aaaattgcta
     5161 aaatagaact tccaaataca atttttagtc ttgatgctaa agcaaatgca aaaaatagta
     5221 atatttctta caatgcttta cttgcttcaa atttacttaa tatcaaaaaa cttcaaggaa
     5281 cttataattt aaaaaatagt gagttaaata cagatttaaa tgcttttatt gatgatttgt
     5341 ctcagtttag tgctatagcg ggacaaaaat tacaaggtaa ggcagatctt aatgcaaaag
     5401 ctcatattat aggtactcaa atacaaaatt taaatgcaaa tgcaaatttg gcagatggcg
     5461 taatcaaagc tgattcaaat ggtaaaaaac ttgatttgaa cattgataaa cttgatttat
     5521 ctaaactttt tgttatagca ggtatgccaa attatgccag tggggttgtt aatgcaaaag
     5581 ttaatttaga taatatcgat tttaacaacc ttaatggtaa agcaaattta gaggctaaag
     5641 gcattttaaa tgctgcaact ttaagtaaaa ttttaaataa aaattttcca aacaatacaa
     5701 gttatgattt aaataccaaa attaatttta aaaacaatat cgctcaattt gattctgttt
     5761 taaattcatc tttagctgat cttacaaaac tacaaggaag ttttgatata agtaagatgc
     5821 ttttaaattc ggattttaat ttaaagataa atgatttttc aaaactaggc tttttgttag
     5881 atagaaaact taaaggtaag gcagaattta atggaaaggt aggttttgat aagagtttaa
     5941 attttgttgt aaatagtcca aatttatttg aaggaaaact tcaaagcaca tttaaagata
     6001 accttttact tgctgattta aacggagtgg atttaagtag tctagctcag ggtttggatt
     6061 ttatggatat ttatcaaggt aaggcggaca tgaaggcaaa ttacaatctt ttaagcgaag
     6121 aaggcgaggt taatttggat atgaaagagg gtaaattaaa accaaatctt attaccaatg
     6181 ctttaaaaat tttaacatta aaagatatta cagatgatgt ttatcgtact gctaatgcta
     6241 aagctttgat taaaaaagaa aatatcaagc ttgatcttaa tatgcaagca gatcgttctt
     6301 atattttagt acaatcagga gctttaaatt ctaaaagtgg agctttaaat ttgccttttg
     6361 atattaaact cgatagagct aattttaaag gaagtattac aggaactaca gaaaatccta
     6421 aagtaaattt aaatgcagga agtgttttaa attctattaa aaatgtagta ggtggcggcg
     6481 tgagtgatgg tgctaaaaat acaggcaata aagtggataa agcggtaaat aaattattaa
     6541 ataagatttt ctaaggtaaa aaatgtttaa tggactcata agagaaattg ccaaagttca
     6601 atcttatcaa aacaatactt taagtttaac agctaagcat cgtccaaatc ttggcgatag
     6661 tatagctgta aatggagctt gtttgagtgt gacaaaactt tatgagggag gttttgaagt
     6721 ggaactttct cgcgaaagtc gcactcatat agctatagag aatttaaaag ataaagttca
     6781 tatagaacct gctttaagat atggcgatag aatcgatgga catcttatgc aagggcatat
     6841 tgattttatt ggtatacttg aaaagattca aaaggatgaa aatggagtgg attttcatat
     6901 aactttacct aaagaagcta tgaaatttat ggcagaaaaa ggaagtatag ctgttgatgg
     6961 ggtaagcctt actatcaatg aaattttaaa aaatggtatt aggcttacta ttattcctat
     7021 tacttttaaa gaaacgcttt ttaaggacta tcaagtaggt agaaaaataa atatagaaag
     7081 cgatttgctt gctcgttata tttatgcaca attacaaggt aaaaacaaag gattatcatg
     7141 ggaagaagtg gaaagaattt cttatcttta ttagaaaatg ataaagtcgg tattttttgt
     7201 gcttttgata aggattataa tgtttttagg gctaaaattc ataatgagaa tttattttct
     7261 catttaggtt ttaaagatat tgaaaaatgt gtttttatgg atcaaattca ctctcataaa
     7321 gttatcattt atgatgaaaa tttaaaaaat ctcagttgtg atggacttat aagtaaagaa
     7381 aaaaatactg ctctttgtgt cttaagtgcg gattgtctgc ctttgatctt atatcatgaa
     7441 agtggcatta tagcagcttt gcattcaggt agaaaaggaa gctttgaaaa tatcctaaaa
     7501 gaatgcgttg atcaaattac tatgcaaaat tcacatttag ataagaataa atttcatctt
     7561 tttattttac ctggaatttg tgctaaaaat tatgaaatag atggagaaat tttagaattt
     7621 gctaaaaaag aatttaaaga atttgttcaa gataataaac ttgatttaaa agccttggta
     7681 aaatttcaag ctcaaaattt aggcattgaa aatattaaag attgtggaat ttgtagtttt
     7741 gatgatgaga gttttttttc ttatcgtcgc gataaaacgc ctaagcgttt tgtgagcgtg
     7801 gtttatttaa aggattaaaa tgtatgaaag aaaagattta agagtgttaa aaatcattca
     7861 aaaagctaga gaatttggcg atggggattt gttaaatgaa gctttggtga aacaattaat
     7921 tgatgcagat ttttgtgaaa ttagtgaaaa agaaaaagaa gagcttgcaa ctcttctaaa
     7981 ttctttaatc aatgcaaaag ataaagcgtt gttgagtaat taaaattcta tatagttttc
     8041 aaaatcttct tcttttgggg gattaggttg attcgaggct agggcttctt taacaacctg
     8101 ctcgtatcca gctatgatat gtttaaaatt ctcttttgct tttccactaa gttctgattt
     8161 ggcgattttt acaacagatg caggatttat agctttatta tttaaatata ctccaaaatg
     8221 caaatgaggc cctgtgctca tacctgttga accaacatat gcaattactt gtccttgatt
     8281 taccttttgt ccgtttttaa tttttgcaaa acgactaaga tgagcatata aagtcatata
     8341 acctgagtca tgcttgattt gaattacatt tccataacca ccttttgtgc ctataaaggt
     8401 tactactcct ttgccagcac ttttcacagg agttccagta ggtgcagcat agtctatacc
     8461 aagatgggca cgatagcgtt ttaatatagg atgatatctt gctgttgtaa aaggagaaga
     8521 aattctagtg taattcacag gttttgtaag taaaaaagat tctaattctt tgccatcacg
     8581 atcatagaat atatcattat aagaaaagac ttctctagcg cttttattga tttctaccat
     8641 tgccattttt atatttatat caccccaaag tttacccatg cgtctttttt gttcataata
     8701 tagggttact tcatcacctt tttggatatt gcgaaaattt atacttcctc gaaaagcacg
     8761 aaccatagca cgagctaaag tactgctacc actttcttca tagacatctt gataagcaga
     8821 gcttttaatg gttaaatgta aaattctatc ttctttttga taagatacag gagtaaaagc
     8881 aagagtgtat tgtccatctt tatctttata gatatgaatt tgtaaatcat cgctaattgg
     8941 aattaaaact tgttctatgt tgttgttttc atcttttaaa acttgatatt ttattttata
     9001 ggctatatca gaagcaagtt cttgatcttc tctatcaagt ccataataaa gcgacatagg
     9061 tatggaattt ctttgtaaga atttaagcaa ggtatctcca ttatcccaag ttagctcttc
     9121 aacacttaaa gctgcaaaac tttgaacaac aaaaataaat aaaagcaata attttttcat
     9181 gagataacct taatttttaa aagaattttg aaatttgaaa gctatatttt actttatttt
     9241 tcttacaatt gcttaacaaa aaaggattat aattctataa atttttattt aaggagcaaa
     9301 tttgtttaaa actatagtgt gttttttagc tttaaacctt agcctctttg cggttggatt
     9361 tgatttaaaa cctataaaaa gtgaacttgt aaaagttgat gatatttatg gttatattaa
     9421 agatagtgat gatataaaac tttattcaag tggcgtagta gtgcaacatt ttagcaattc
     9481 gcaaagtatc atcgctagag caagtgttat agataaaaaa aatggtttgg caaaattaga
     9541 atttagtgtt ttttcagctc ttaagcaaga tgctttgcct ttaccaaatg ttttacctaa
     9601 agtaggtgat gaggttgttt taaattttct ttatgataga ggattggtaa ttgctcctga
     9661 tgaacaaact tataatgaac ttgttagaga atttccgcag atatatttta cccatattga
     9721 tatttttgga gcacaattaa ttagaacggc tactctttct cctaagcgtt cagatcttag
     9781 gcaattttgt gatgataatg cggttggtat tttggttgta gctttggaaa atcaagcaga
     9841 agttgtggat tgtcaagatt ttaataagct ttatgaagtg cctataagca aaccaattag
     9901 cgttcaggtt cctttttatt ctcgtatagg tggatataaa agtaattttt ttgattttaa
     9961 ctctcaagaa ataggaaatt attatagata ttatgatgct ttgattaatc ttcctaaggt
    10021 gcaataaaca tgaaaaaaga atttgaacaa tattttaaac gatttttagg agaagaaaac
    10081 gcttattttg atgaaattca caaaagagct tatagctatg atgcgacaaa aaaacattat
    10141 ttacccgatg gggttctttt tccaagaaat gaagaagata ttgctcaaat tttaaaattt
    10201 tgcaatgaaa ataatatcat agtcatacct cgaggctcag gatctggttt tacaggagga
    10261 gctttagctg ttaatggcgg ggtggtgctt gcttttgaaa agcatatgaa taaaatttta
    10321 gaaattgatc ttgaaaattt agtggctgtt gtgcaacctg gggttattaa tatacattta
    10381 caaaaagaag tggctaaata tggacttttt tacccacctg accctgctag catggagtat
    10441 tcaagcttag ggggtaatgt aagcgaaaat gctgggggaa tgagagctgc aaaatatggc
    10501 attacaaaag attatgtgat ggctttaagg gctgttttgc ctagcggaga aatcattcgt
    10561 gcagggaaac gcactattaa agatgtagca ggttataatt tggcaggaat tttaatcgct
    10621 agtgaaggtt ctttggcagt tttaagtgag cttactttaa aattaatacc tttgcctaaa
    10681 tttaaaaaaa ctgcttttgc tatttttcca agtgtaaaaa gtgctatgaa tgcggtttac
    10741 aaaagtcttg ctagcggtgt aagtcctgta tctatggaat ttttagacaa tcttagcatt
    10801 agagcggttg agagcaaatt taataaaggt ttgcctatag aagctggagc tattttgatt
    10861 gctgatgtgg atggtaatgt taaagaggct attgatgagg atttaagaaa tttagaatat
    10921 tattttttag aagctggcgc tagcgaattt aaaatagcaa aagatgaaca agaaaccgca
    10981 gatatttggt ttgctagaag aaattgttct caaagcattg ccatgtatgg aactttaaaa
    11041 cttaatgaag atattacagt tccgcgttct aaactaccta ctttgcttga aggtatagat
    11101 gagatttcta aaaaatatgg ttttaaaatt ccttgttttg gacatacagg ggatggaaat
    11161 gtgcatacta atgttatggt tcctgataaa aatgataaag agcaggtgaa aaaaggctat
    11221 gaagctgtgg aagagatttt taaattaaca gtgaaacttg gaggaacttt aagcggagag
    11281 catggtatcg gactctctaa ggcacctttt atgaatttag ctttttctga agccgaaatg
    11341 aatttaatga gaaatattaa aaaagctttt gatccaaata atatactaaa tccttttaaa
    11401 atgggacttt agaaggtgaa aaattttttt actattttac taaatttgcg tgataaggaa
    11461 attttaaatt atgcagcagc gcttagtttt tatactgtat tatctttaat acctatttta
    11521 tttgtatgtt tttctgtttt tacgcaaatt tccagtttta aagcttatta tgaaaaagca
    11581 aagcaagtaa tttttgcttt tttaatacca acgcaacaag atgttgttgc tacctacatc
    11641 gatacttttt taaaaaatag tgtaaatttg ggtattgtag gtcttattgc tatggcattt
    11701 acttctttag cttttttttc aggctatgat tttgtaatca atcgcattac taaaaatgaa
    11761 cctaaaggac tttggcaaag tattagttct tattggactc ttttaactct tgttcctttg
    11821 gggcttgggc ttagttttta tatttcaggt tttatccaac aaactttaga tgattataaa
    11881 atagggttta atttttttga aattttaccc tttgtaatta tttggggttt attttttata
    11941 tcttattcaa gttctgttca taagggaact cttaaaagtt tagctttagt atcttttgga
    12001 gcgggtacta tttggtatat aggaaaaaat ttatttgtat attacgtggt atataataaa
    12061 acatacgcta gcgtttatgg atctttttct actattttat tcttttttat ttggatttat
    12121 atttcttgga ttatttatct ttttgggctt aaactctatt attttctaaa tcacaatcat
    12181 aatgaaggga ataaaattcg caaaaataca aagaaaagct agatatttaa atcgcacaga
    12241 gattaaagaa gcaataagat aacttataaa aatccaaaat gggatatgga tattagttcc
    12301 ataaatttta aatttaaaaa attcatctaa gataaaattg agcaaatctc catagtttat
    12361 aagatgcaaa aataatacta aaggataaaa tattacaaaa attccactca aaataatacc
    12421 taaaatttgt tggtagctta taagtggaaa aaaataaagc acaggtaaaa ccatagcaaa
    12481 aaaagtccaa atattaagca aaataatatt tataagatta ttaaatttat ttgcaaaatg
    12541 atgcatatat aaaaaaatat aaaaaacacc taaaatagaa aataaaaatc caatactaaa
    12601 taaaagtcta gggtaaagag aaatgcacaa taaaatacta caaaaaagcg taacgaaatt
    12661 aatgattttt atatttttac acaatagata aaaaatccaa aaagccataa tcaaggagcg
    12721 cacaaaagaa gggacaaatc ctattaaaca agcataagct aaaagtagtg caaaaattaa
    12781 aatacttaaa tctaaacgta aatttctata aggaaaatat cttttttgga aaaaactata
    12841 aattggagct aaaataaaga aaattaaact aaaaagtaag cctatgtgat aaccgctaat
    12901 tgctataagg tgtgctatac cgtagtaatt tacatcgttt ctaagctcta aagatatggg
    12961 cagtgcaaaa aataaagcac cataaaattc tttaatcttt tcatttgtat gttgatttaa
    13021 gaagtaagat ataatgggat tgtattcttt ttcttttaat ttttcaaaat cataagaagg
    13081 tgcgtaaaaa cttttactca gatagtcttt aaagttaata ttatgggtga taattctaag
    13141 gcttaaaaat tgattcttgc ttaaatttaa atccttaaaa cttgtagtat aaaaagtgaa
    13201 gttttcagtt tgtaacttta aaacccagta ttttttattt tttttattat attttatata
    13261 ttggtgcgtt aatagagcgt tgtctataag gtaatgtttt tggtttttaa agtttaaaaa
    13321 attattatat tctaaaagga tattaaaaat aaaaa
//
LOCUS       DARGBD010000041        13213 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.041, whole genome shotgun sequence.
ACCESSION   DARGBD010000041 DARGBD010000000
VERSION     DARGBD010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13213
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.041"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            39..815
                     /gene="surE"
                     /locus_tag="SFZ04_000972"
     CDS             39..815
                     /gene="surE"
                     /locus_tag="SFZ04_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEG8065260.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            805..1458
                     /locus_tag="SFZ04_000973"
     CDS             805..1458
                     /locus_tag="SFZ04_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEG8065261.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFQNLTLIDADKFEITNQNRQIHSENLGEEKAKVFARIYNAKGIVSKIDNEFLANFD
                     LSEFDLIIDAIDDIPAKVALANLIDFKRQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAR"
     gene            complement(1533..1913)
                     /locus_tag="SFZ04_000974"
     CDS             complement(1533..1913)
                     /locus_tag="SFZ04_000974"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEG8065262.1"
                     /translation="MNITLLKSKIHRANITEARLDYVGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(1910..2758)
                     /locus_tag="SFZ04_000975"
     CDS             complement(1910..2758)
                     /locus_tag="SFZ04_000975"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEG8065263.1"
                     /translation="MEVITSIKEAKQIVKNWKSHNLSIGYVPTMGFLHDGHLSLVKNA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDAAQMYLKNF
                     STYVDMNTITDKLCGAKRLGHFRGVCTVLAKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSEEERKASLAISQSIFLAEKLVQEGEKD
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIKNIADNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(2769..3593)
                     /gene="panB"
                     /locus_tag="SFZ04_000976"
     CDS             complement(2769..3593)
                     /gene="panB"
                     /locus_tag="SFZ04_000976"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEG8065264.1"
                     /translation="MRKSILSFLEKKGKNEKITMVSAYDYHSAKILDNCDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSEEHSFDYLDDELLDKLY"
     gene            complement(3747..4637)
                     /locus_tag="SFZ04_000977"
     CDS             complement(3747..4637)
                     /locus_tag="SFZ04_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG8065265.1"
                     /translation="MIKIDIKLPINTAKGKKQLELNTCLKANEITAIFGESGAGKTTL
                     LKIIAGLIKPEFGRIEVGDELWLDTQKNINLAIQKRKIGFVFQDYALFPNMSVKENIS
                     YAATSKQKVEELLSLMNLENLAKIYPKNLSGGQAQRVALARALAREPQILLLDEPLSA
                     LDFKMRSFLQDELVKILQHFKITTLLVSHDLAEIYKLSHRILELSDGKIIKDARTNEF
                     FTSSNLSAKLRLSATLLEIKKSDILMIFTLLLNQDIVKITLSEEEFLRTYKNVKIGDT
                     LLLSIKAFNPIIVGKLDKQK"
     gene            complement(4647..5315)
                     /gene="modB"
                     /locus_tag="SFZ04_000978"
     CDS             complement(4647..5315)
                     /gene="modB"
                     /locus_tag="SFZ04_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEG8065266.1"
                     /translation="MDNDFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVKFPFKSL
                     VQTFVALPLVLPPSVLGFYLLISFSQNSFLGQFLKEYFNLSLVFSFEGLVFASLIFSL
                     PFMVNPLQSAFSSINQNLLDASYALGKGKIYTLFRVILPNSKVGIFSACAMSFAHTIG
                     EFGVVMMIGGHKKGETLVASIAIYDELEVLNYTLAHQYAFTLFAISFAILLSLYFVNK
                     KIAL"
     gene            complement(5308..5709)
                     /locus_tag="SFZ04_000979"
     CDS             complement(5308..5709)
                     /locus_tag="SFZ04_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HEG8065267.1"
                     /translation="MNILNGKIIELLNEGEIVIVKISIKEHIFKVLMLDLHSLQDLKI
                     GTKIQVLFKEHELGFALPHSILSVENSFLARIKSIKKGKILYHIFFDFEGDEISSIIA
                     KEKALELKLEEGQEWLCFVKENDIILKAIYG"
     gene            complement(5706..6455)
                     /gene="modA"
                     /locus_tag="SFZ04_000980"
     CDS             complement(5706..6455)
                     /gene="modA"
                     /locus_tag="SFZ04_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8065268.1"
                     /translation="MKKLVLIFIVLFLSLNLNAQNLSVFVASSASKAMEEVKNEFLKS
                     HPNDNIDLVFGASGKYYQLLKQGREFDLFFSADTKYAQAIYEDQNALDKPKVYVLGIL
                     ALYSLDESLLEGGIEKLKDKANKIHHLSLANPKVAPYGVAAKEVLENLKLDKLFEDKI
                     VLGENISVPVLHVDSNNADLGIVAYSLVSSINHPKGKAILIDQKYFTPLKQSYVITRY
                     AKDKKLAFEFSDFISSQKAKEIFKKYGFDTP"
     gene            complement(6509..7195)
                     /gene="bioC"
                     /locus_tag="SFZ04_000981"
     CDS             complement(6509..7195)
                     /gene="bioC"
                     /locus_tag="SFZ04_000981"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HEG8065269.1"
                     /translation="MNFLKAKDYQKHAKVQDLMGLKLCEILKNLEISHFKKVFEFGCG
                     RGEFSDKLSKIITFDEYLKNDILDYPDNLNVEIFDMNTLATQILSKQKFDLITSNASL
                     QWLDLKQVLPTLANMLNEKGILLLSTFGKMNLKEIKQSTGLGLKYFSTKELEQIFKPY
                     FSDIKITEEIVNLEFQNALEVFKHLKLSGVNSLGFYRLNKQFLKEFEEKFQNKLTYHP
                     IFILCKKDTK"
     gene            complement(7192..7803)
                     /locus_tag="SFZ04_000982"
     CDS             complement(7192..7803)
                     /locus_tag="SFZ04_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HEG8065270.1"
                     /translation="MKISNLIQNENSQELILVFGGFASHPSHFAHLKSDKNVVLVYDY
                     ENLDFKFDLKSFSKITLIAFSMGVCVASRVLKDIEFSQKIAINGTPFGIDKLKGIHPA
                     IFAKQIKKFDLTAFKKSLFKERKNEAKNFIFKDEKDLKTELEKLFEFASKECNENFIW
                     DKIYSSNNDEIFPQNALKNTFSKLIFLNEPHFAFFHFKTWDEI"
     gene            complement(7800..8942)
                     /locus_tag="SFZ04_000983"
     CDS             complement(7800..8942)
                     /locus_tag="SFZ04_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEG8065271.1"
                     /translation="MSLENILEALEKNHNLRKLTSLKHEGNFVFKEGKKLLNLAGNDY
                     LNLSSCKSLKDEFLDNVKEQDLFFSSSSSRSLSGNFTIYEELESFLKSKFKEKEILHF
                     NSGYHLNISCIAALVSIPNTLFLADKFIHASMIDGLKLGGAKFFRFHHNDMNHLENLI
                     QKHYDHYENIIILSEALFSMDGDFSDFNTLIAFKEKYPKIKLYIDEAHSVGCFDEEGL
                     GLVKALNLEEKVDFIVFTFGKALASMGACIICNNLYKSFFINKARAFIYSTALPPINI
                     AWTKFIFEKMSELKEKREKLQIIGNFFKNQLIEKNHQILGDAYIISLVLGKNQKTIEL
                     AKKLETNGIFAPAIKEPTVPKNTARIRFSLHAGLSKEDLKKVIELL"
     gene            9009..10292
                     /locus_tag="SFZ04_000984"
     CDS             9009..10292
                     /locus_tag="SFZ04_000984"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEG8065272.1"
                     /translation="MQNQILKNLDLEHIWHPCTQMKDHENLPLIPIKRAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKPLLLECLSTPVPQSKDYTQELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHQFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYILESLEQIFKEF"
     gene            complement(10279..10884)
                     /locus_tag="SFZ04_000985"
     CDS             complement(10279..10884)
                     /locus_tag="SFZ04_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HEG8065273.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(10894..11208)
                     /locus_tag="SFZ04_000986"
     CDS             complement(10894..11208)
                     /locus_tag="SFZ04_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8065274.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLITVIIACTVGLKF
                     LS"
     gene            complement(11211..11549)
                     /locus_tag="SFZ04_000987"
     CDS             complement(11211..11549)
                     /locus_tag="SFZ04_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG8065275.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWQYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            11683..12219
                     /locus_tag="SFZ04_000988"
     CDS             11683..12219
                     /locus_tag="SFZ04_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEG8065276.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            12216..12761
                     /locus_tag="SFZ04_000989"
     CDS             12216..12761
                     /locus_tag="SFZ04_000989"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEG8065277.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSIYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHTKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            12763..>13213
                     /locus_tag="SFZ04_000990"
     CDS             12763..>13213
                     /locus_tag="SFZ04_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8065278.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNF"
BASE COUNT         4502 a         2039 c         2053 g         4619 t
ORIGIN      
        1 tgttaaaatc cagattttta tcttttgcaa ggaagacaat gaaagaaatt cttatcacta
       61 atgacgatgg ttatgaaagc gaaggactta aaaaactcat taagatgtta acaaaagaat
      121 ttaaagccaa gatcaccata gtagctcctg ctagtgaaaa atcagcttgt tcgcactcta
      181 taaccctaac caaacctttg cgttttgtta aagtgggaaa aagattttac aaacttgatg
      241 atggcactcc agcagattgt gtttatcttg ctttgcatgc tttatacaaa aagcgtttgc
      301 ctgatcttgt aataagtggg attaataaag gtgctaatgt aggcgaggat attacctact
      361 caggaacttg cgcaggagct atggaggcgg ttttacaagg aattcctgct atcgctcttt
      421 ctcaatttta taaaaaaagc gaaaaagaac tagactataa aaatgcttta caaattacca
      481 aaaaaatcat tcaaaatatt tttgataaag gttttccttt ggaaaaaaaa gaatttttaa
      541 atatcaattt tcctgcaaaa tcaaaaatca aaggcattaa aatttgtaaa gcaggcaaaa
      601 gggtttataa ttttgaagcc cattcaaatg tcaatccgag aggagtagag tactattggc
      661 ttgcagcggc gaatttagac tttgaagatg agaaaaatag cgatattgcc ttacttaaaa
      721 aaggttacgc tacaataaca cctataatgc tggatcttac agcttatgaa agaatgaaaa
      781 aagttaaaaa atggttaaag gcaaatgatg aatgatagat ttacacgtat aaaatggcta
      841 gttggagaag aaaaatttca aaaaatttca caaacaaaag ttttggtttg cggacttggt
      901 ggagtgggtg gaatttgcgt tgatgcgctt tatcgtagcg gttttcaaaa tcttacttta
      961 atcgatgcgg ataaatttga aatcaccaat caaaaccgcc aaattcatag tgaaaattta
     1021 ggcgaagaaa aagctaaggt ttttgctaga atttacaatg ctaagggtat agtaagtaaa
     1081 atagacaatg aatttttagc aaattttgat ttaagtgaat ttgatttaat catcgatgca
     1141 attgatgata tccctgcaaa agtagcactt gccaatttga tcgattttaa gcgtcaaatt
     1201 tttatctctt ctacaggtgg ggctagaaag cttgatccta cgcgtataaa aactacaagt
     1261 atatttaaaa cccacggaga tgctttagca aaaaaatttc gttacgagct tagaaaatca
     1321 ggttttaaag gaaattttga tgtggttttt tcagatgagg aagcgcattg taaagatctt
     1381 ggatctttca tgggtgtgac tgcatctttt ggtttagctt tagcaagttt agcattaaga
     1441 aaagttcttg ctagataaga ttgaaattta aatatttatc ttagataaat tcatttatct
     1501 aagatagaaa aaattacaaa aatagttaga tattagaaaa tagctccgtg tttttcataa
     1561 tttgttattt ttgtagcagt gttattttca tctacaaaga caacttttgg tttaaatgtt
     1621 tttgcttctt cttcgttaaa atcagcataa gacataatga tcactttatc tcctacttca
     1681 gcaagacgag ccgcagcgcc atttaagcat acaacccctt cttcttgtgt agcgatggtg
     1741 taggtttcaa atctagcgcc attattgaca ttgactactt gaactttttc gtattctaaa
     1801 attccactcg cttgcaataa tttttcatct atgcttatgc ttcctacata atcaagccta
     1861 gcttctgtta tgtttgcacg gtgtattttt gatttgagta aagtaatgtt cattttaatc
     1921 cttgtactaa aaaattatca atgagtcttg tttttccaac aaaagcagcc actgctccta
     1981 aaacattatc ggcgatattt ttaatatttt ccatagtgtt aaaatcaact aattctatat
     2041 aatcgatttt gattaatttt tctttttcta aaatatcttt catagcttgg ataattttgg
     2101 aagtatcttt ttctccttct tggactaatt tttcagctaa aaaaatgctt tgagatatag
     2161 ctagtgacgc ttttctttct tcttcgctaa gatatacatt tctagagctt ttagctaagc
     2221 catcttcttc tctaatgata ggacaaattt gaatttttaa atcaaaattt aaatcatcaa
     2281 ccatatgtct aacgactacg cattgctgcg cgtctttttg ccccatatag actatatcag
     2341 ggtttaggat attaaaaaat ttagccaaaa ctgtgcaaac gcctctaaaa tgccccagtc
     2401 ttttagctcc acaaagctta tccgtgatcg tgttcatatc cacataggtg ctaaaattct
     2461 taagatacat ttgagctgca tcggggataa aaaccatatc aacgccatta tcttgacaca
     2521 ttttaatgtc gcgttctaaa tctcttggat aactagaaaa atcttcatta gggccaaatt
     2581 gcataggatt tacaaagata cttactatga ctttatcttg tgttttggca tttttgacta
     2641 aacttaaatg cccatcgtgt aaaaagccca tggttggaac atagcctatg ctaaggttat
     2701 gtgatttcca attttttaca atttgttttg cttctttgat agaagtaatg acttccatat
     2761 ttgtatcctt agtataattt atctaataat tcatcatcta aataatcaaa gctgtgctct
     2821 tcggaaggaa aaataccgct tttaacttca tctctatatt tttcaactcc tacttgaggg
     2881 tcaattttat caaaatgctt tacaaatttt gctttaaaat ctttatttaa acctaaaaga
     2941 tcatgataaa ctaaaacttg tccatcgcag tatttacctg aacctatgcc gattgttgga
     3001 atttctaaaa tagagcttat tttttgtgct aattttacag gtacgcattc taaaaccaac
     3061 atacaagcac ccgcatcttg cacagctttt gcatcatcta tgattttttg agccgattgt
     3121 aaatctttac cttgaactct atatccacct agcatattta cagcttgtgg ggttagtcct
     3181 aggtgagcaa cgacgggtat tcctgattgg gaaattaatt taatcttgct tgcgatttct
     3241 ataccccctt ccacttttac cccatttgca tggctttctt tgataaatct tgaggcattt
     3301 aagatagcgt cacgatccga gctttgataa gacatgaaag gcatatccgc aagtacgaaa
     3361 gactttttag ctccgcgaga aacagctttg gtaaagatca acatttcatc catggtcaca
     3421 cttaaagtat cttgcatgcc aagcactgtc atagctaatg aatctccaac caatatgata
     3481 tctatatcgc aattatctag aatttttgca ctatggtagt cataggcact taccatggtt
     3541 attttttcat ttttaccttt tttttccaaa aaactaagaa tactttttct catttaaaat
     3601 acctcgttta gctataaaat agtaagcaaa aaactagcat ataaattttc ataaatagta
     3661 aataaacgat aaaacaaaat atatttaatt aatggattgt tttaatggtt acaattttgg
     3721 aaaatttctg tagaaaaatt aaatttttac ttttgtttat caagttttcc tacgatgata
     3781 gggttaaagg cttttatgga tagtaaaagc gtatcgccga tttttacatt tttataagtt
     3841 cttaaaaatt cttcttcgct aagtgtgatt ttaacgatat cttgatttaa aagtagggta
     3901 aaaatcatca aaatatcact ttttttaatc tcaagcaaag ttgcacttaa acgcagtttc
     3961 gcacttaaat ttgatgaggt aaaaaattca tttgttcttg catctttgat gatttttcca
     4021 tcactaagct ctaaaattct atgacttaat ttgtaaattt cagccaaatc gtgacttacc
     4081 aataaagtag tgattttaaa atgttgtaaa attttcacaa gctcatcttg caaaaaagat
     4141 cgcattttaa agtctaatgc actcaaaggc tcatctaaaa gtaaaatttg cggttctctc
     4201 gctaaagccc ttgctaaagc cactctttgt gcttgtccac cgcttaaatt tttgggataa
     4261 attttggcta aattttctaa attcattaag cttaaaagct cttctacttt ttgttttgaa
     4321 gtcgcagcgt aagaaatgtt ttcttttacg ctcatatttg gaaaaagagc ataatcttga
     4381 aaaacaaagc cgatttttct tttttgtatg gctaaattga tatttttttg ggtatcaagc
     4441 caaagctcat ctcctacttc tatgcgccca aattcaggtt ttataagtcc tgcaatgatt
     4501 ttaagtaaag tcgtttttcc cgcaccgctt tctccaaaaa tagcagtgat ttcatttgct
     4561 tttaggcaag tgtttaattc tagttgcttc ttgccttttg ctgtgttaat gggaagtttt
     4621 atatcgattt ttatcataaa attggcctat agagcgattt ttttgttcac aaaataaaga
     4681 cttaagagta tagcaaaaga aatcgcaaat aaagtaaaag cgtattgatg tgctaaggta
     4741 tagtttaaaa cttcaagctc atcataaata gcaatacttg cgaccaaagt ttcacctttt
     4801 ttgtgtccac ctatcatcat caccactcca aattcaccaa tggtgtgtgc aaaactcatc
     4861 gcgcaagcac taaaaatccc tactttagaa ttgggtaaaa tcactctaaa aagtgtataa
     4921 attttaccct ttcctagagc ataagaagca tcaagtaggt tttgattgat tgatgaaaaa
     4981 gcactttgta aaggatttac cataaagggc agagaaaaaa tcaaagaagc aaatactaaa
     5041 ccttcaaagc taaaaaccaa agaaaggtta aaatattctt ttaaaaattg tcctaaaaag
     5101 ctgttttgtg aaaagcttat gagtaaataa aatcccaaaa cacttggagg caaaaccaag
     5161 ggcaaagcta caaaggtttg caccaagctt ttaaaaggaa atttcacaaa gcttaaaaga
     5221 taggctaaaa atactccgat gaaaaagagt ataaaggtag tgataaatgc aagtttaaag
     5281 gtaagataaa gggtttgtaa aaaatcatta tccataaata gcctttaaaa tgatatcgtt
     5341 ttccttgaca aagcaaagcc attcttgtcc ttcttcgagc ttaagctcta aggctttttc
     5401 tttagcgata atgctagaaa tttcatcacc ctcaaaatca aaaaagatat gatatagaat
     5461 tttgcccttt ttaatacttt taatccttgc tagaaatgaa ttttccacac ttaaaataga
     5521 atgaggcaag gcaaagccaa gttcgtgttc tttaaaaagc acttgaattt ttgtacctat
     5581 tttaagatct tgcaaagaat gaagatcaag cattaaaact ttaaaaatat gctctttaat
     5641 actgatctta acgatgacaa tctcaccctc atttaaaagc tctataatct tgccatttaa
     5701 gatattcaag gtgtgtcaaa tccgtatttt ttaaagattt cttttgcttt ttgtgagctg
     5761 ataaaatcgc taaattcaaa ggctaatttt ttatctttag cgtatcttgt gatgacatag
     5821 ctttgtttta aaggggtgaa gtatttttga tcgattaaaa tagctttgcc cttaggatga
     5881 ttgatagaag atactaaaga ataagccaca atacccaaat ccgcattatt gctatcgaca
     5941 tgtaaaacgg gcacggagat attttcacct aaaacaattt tatcttcaaa gagtttgtct
     6001 aattttaaat tttcaagtac ttctttagca gctactccat aaggagcaac ttttggattt
     6061 gcaaggctta ggtgatgaat tttatttgct ttatctttta gcttttctat cccaccttca
     6121 agtaagcttt catctaagct atataaggct aagataccta aaacataaac ttttggttta
     6181 tctaaagcgt tttgatcctc ataaattgct tgcgcgtatt ttgtatcggc tgaaaaaaat
     6241 agatcaaatt ctctcccttg tttcaaaagt tgataatact ttcccgaagc accaaaaaca
     6301 agatctatat tgtcattagg gtgtgatttt aaaaattcat ttttgacttc ttccatagct
     6361 tttgaagctg aagaagctac gaaaacactt aaattttgtg catttaaatt taaagataaa
     6421 aacaacacta taaaaattaa cacaagcttt ttcactgcac tttcctttgt agataatctt
     6481 gattttttgt attataacat aagaaatttt attttgtatc ttttttgcat aaaataaaaa
     6541 taggatgata agtgagttta ttttggaatt tttcttcaaa ttcttttaag aattgcttgt
     6601 ttaagcgata aaatcccaaa gaatttaccc cgcttaattt caaatgctta aaaacctcta
     6661 aagcgttttg aaattccaaa tttacaattt cttcagtgat tttaatatca gaaaaatagg
     6721 gtttaaaaat ttgttcaagt tcttttgtgc taaaatattt taaacccaag cctgtgcttt
     6781 gtttgatctc ttttaaattc atttttccaa aagtagaaag aagtaaaatt cctttttcat
     6841 ttaacatatt tgctagtgtg ggcaaaacct gctttaaatc aagccattgc aaactcgcat
     6901 tagaagtgat aagatcaaat ttttgcttgc ttaaaatctg tgtagctagg gtattcatat
     6961 caaaaatttc tacattaaga ttgtcaggat aatccaaaat atcatttttt agatattcat
     7021 caaaagtgat aatttttgaa agtttgtcgc taaattcgcc cctaccacaa ccaaattcaa
     7081 acactttttt aaaatgcgaa atttctaaat tttttaaaat ttcacaaagt tttaaaccca
     7141 ttaaatcttg cacttttgcg tgtttttgat aatcttttgc ttttaaaaaa ttcaaatttc
     7201 atcccaagtt ttaaaatgaa aaaaagcaaa atgtggctca tttaggaaaa taagctttga
     7261 aaaagtgttt tttaaagcat tttgaggaaa aatttcatca ttattgcttg agtaaatttt
     7321 gtcccaaata aagttttcat tacactcttt tgaggcaaat tcgaaaagtt tttcaagctc
     7381 ggtttttaaa tctttttcat ctttaaaaat aaagtttttt gcttcatttt tgcgctcttt
     7441 aaataaagat tttttaaaag ccgtgagatc aaatttttta atttgcttag caaaaattgc
     7501 aggatgaatt ccttttaatt tatctatgcc aaaaggagtg ccattgatag ctattttttg
     7561 cgaaaactct atatctttta aaactctact tgctacgcaa actcccatag aaaaagctat
     7621 gagagtgatt ttagaaaaag actttaaatc aaatttaaag tctaaatttt cataatcata
     7681 aaccaaaact acatttttat cgctttttaa atgtgcaaaa tggctaggat gtgaagcaaa
     7741 accgccaaat actaagataa gttcttgtga gttttcattt tgaattaaat tgcttatttt
     7801 cataaaagtt ctatcacttt ctttaaatct tctttactaa gtcctgcatg caaagaaaaa
     7861 cgaattctag ctgtattttt aggcaccgta ggttctttta tagcgggtgc aaaaatgcca
     7921 tttgtttcaa gtttttttgc taattctata gtcttttgat tttttcccaa aaccaaggag
     7981 atgatgtaag catcgcctaa aatttgatga tttttttcta tgagttgatt tttaaaaaag
     8041 ttgcctatga tttgtaattt ttctcttttt tcttttagct cgctcatttt ttcaaaaata
     8101 aattttgtcc aagctatatt gataggaggc agcgctgtag aataaataaa agctctagct
     8161 ttgttgataa aaaagctttt ataaagatta ttacaaatta tgcaagcacc catagaagca
     8221 agagccttgc caaaggtaaa aactataaaa tcaacctttt cttccaaatt taaagcttta
     8281 acaagtccca agccctcctc atcaaagcaa cccacgctgt gcgcttcatc gatataaagt
     8341 ttgattttag ggtatttttc tttaaaggcg atgagtgtat taaaatcaga aaaatcacca
     8401 tccatgctaa ataatgcttc gcttaaaatg atgatatttt cataatgatc ataatgtttt
     8461 tgaattaaat tttctaaatg attcatatcg ttatgatgaa agcgaaaaaa ttttgctccg
     8521 ccaagtttta gtccatcaat catacttgca tggatgaatt tatctgctaa aaaaagtgta
     8581 tttggaatgc tcacaagtgc agctatacaa gagatattaa gatgataacc gctgttaaaa
     8641 tgtaagattt ctttttcttt aaatttggat tttaaaaagc tttctaattc ctcataaatt
     8701 gtaaaatttc cactcaagct ccttgaactt gagcttgaaa aaaataagtc ttgttctttg
     8761 acattatcta aaaattcatc ttttaaagat ttgcaagagc ttaaatttaa ataatcattc
     8821 cccgctaaat ttaaaagctt tttaccctct ttaaaaacaa aatttccttc atgtttgagg
     8881 cttgtaagtt ttctaagatt gtgatttttt tcaagggctt ctaagatatt ttcaaggctc
     8941 atttttttcc taaaattcag aaatttaaag tattattttg ccaaaatata tttaaaaaag
     9001 aagttataat gcaaaatcaa atcttaaaaa atctcgattt agagcatatt tggcaccctt
     9061 gtacgcaaat gaaagatcat gaaaatttgc cactcattcc tataaaaaga gctaaaggag
     9121 tgtggcttta tgattttgat gataaggctt atatggactg tgtgagctcg tggtgggtaa
     9181 atctttttgg gcattgtaat gaaaaaatcg caaatgccat taaaaaacaa gttgatgagc
     9241 tagagcatgt gattttagca ggttttacac atgagcccat catcaagctt tctgcaagac
     9301 tttgcgaaaa agtaggcagg aattttaaca aatgttttta cgcagataat ggttcaagcg
     9361 ctattgaagt cgcacttaag atgagctttc attatcattt aaataaggga gtgaaaaaaa
     9421 gtaaattttt atctttaagt aattcttatc atggtgaaac cttaggagcc ttaagtgtag
     9481 gagatgtagc actttataaa gatacttata agcctttact tttagagtgt ttaagcacgc
     9541 ctgtgccaca aagtaaagat tacactcaag agcttgaaat tttaaaagat attttagaaa
     9601 aaaatgcaag tgaaatttgc gcttttatac ttgaaccttt ggtgcaatgt gcgggaaata
     9661 tgcatatgta tgaagcaggg ttcattgatg aggccataaa gctttgccat caatttggag
     9721 tgcaagtgat ttttgatgaa attgcagtgg gctttggacg cacaggaact ttgtttgcct
     9781 tacatcaatg caaacaaagc cccgatttta tctgtctttc aaaagggata acgggtggat
     9841 ttatgccact ttctgtagtg cttacaagag atgaaattta taatgctttt tatgatactt
     9901 atgaaagcca aaaggctttt ttacattctc atagctatac gggaaatacc ttagcttgcg
     9961 cggcagcaaa tgcggtttta gatatctttg aggatgaaaa tattttagta aaaaatcaaa
    10021 ttttaagcga gtttatcaaa aaagaatttt caagacttga aaaatttgac tttttgggta
    10081 attttagaac ttgcgggatg atcagtgctt ttgatatttt aagcaccaag tataaacgcg
    10141 taggactttt tgtatttcaa aaagccttag aaaaaggttt gcttttaaga cctttagcaa
    10201 atacgattta ttttatgcct ccttacatca tcacaaaaga acaaatcgtt tatatactag
    10261 agagtttaga gcagattttt aaggaatttt aagttgtaaa atttcttgca tttgctcttt
    10321 aaaatcttta tttaaaatgc tattttcatc aaaaaaatca agattgatta taggaatttt
    10381 tgcataattt tttataaaat catcttgtaa gatatctttt ttacccatca ttacaagggc
    10441 taaaagattg atatttcttt gctttaaagc ttcaatgcta agcaagatat gattaatgct
    10501 tccaagatag tattttgcta ccaaaatcgt agggtgtttg aaaatattca caaaatcaat
    10561 catagtgtaa ttttcatcca taggagaaaa aagcccaccc gcaagctcaa taagtaggtt
    10621 tttgcttttt ggtaaaatga tatctaaggc tttataatca agcttttctt tgatttttcc
    10681 aagatgagga gaagctggag tttgcaaaaa aataccttct ttaaaaatct ttgtttttgg
    10741 gctaaatttt gcaataaact cgctatctgt tggagttcct gcttgaatga gtttaaaata
    10801 atcatagtta aaattcgcac aaaaagctgc actaaaatgt gtttttccta catcagtatg
    10861 tattccactc acataaattt gcacaaaaaa tccttaagaa agaaatttta aacctactgt
    10921 acaagcaata atcacagtga ttaaaaaaag ttttaaaaaa cttttacttt ctttataaaa
    10981 aagcactcct atcattaccc caccagcggt tccagctcct gtccatatag cataagcaac
    11041 gctcatagcg atattttgca tacttaagct taaaaaagta aaagaaaatc caaaacacac
    11101 tatcaaagct aaaaggtaaa gcttgttttt agtgcttaca agttctttca tgatcaccac
    11161 gccaaaaatt tcacaggcag tagctaaaaa caaataaaac cattccataa ctaagcttcc
    11221 ttgcttaccc atttaagggc tataatactt aaaagtaaaa ttgctataag cacaagttta
    11281 attatagaaa cagcttcgtt aaaaataaac atttcgttta aaaccacccc aatagtgcca
    11341 atgcctacaa aaacactata agtaatactt acttcaagtc tttcacaagc ttttaaaaag
    11401 caagtaaaag aaatacaaac cccaatggct gttaaaatat actgccaaat ttctgtagaa
    11461 tatttaagtc cacttaccca aaagcattct ataattccac ctaagattat taaaaaccaa
    11521 gctatattaa tattgaattt ttcattcaca tgaagcctta aattaacata atatttgtaa
    11581 aacaaattat atcttaaaga aattaaaaga agctataaat ttacttttcc ataagccaaa
    11641 attagatata atcaaagctc attttttaag aaaggacaaa agatgttaga aggcatcgtt
    11701 agagagagta tcggtagaaa agctgctaaa gctttaaaaa gagatggtta tctaatcgca
    11761 aacatctatg gaaaaggatt agaaaacatc aatgccgctt ttaaagtaaa tgagtttatt
    11821 aaggaagttc gtaaaaaaac tactttaatt tttgatgtaa aagtaggttc tcaaacttta
    11881 agcgttgtag ttgtagatta tcaaaaagat cctgtaactg cagaacttaa acatgtggat
    11941 ttaaaagttg cacaaaaagg tgtgatttct aaatacatgg tcccagttaa aatcacagga
    12001 acagctatag gtcttaaaaa taaaggtgtt ttaatccaat caaaaagaag attaaaagta
    12061 aaatgtgcag ctgaaaattt accaaatttc ttcgaacttg atgtaagtaa acttgatgtg
    12121 ggtgatgctt tacttgttcg tgatattgta gttcctgcgg gagtaactat gattgatgct
    12181 gatagagtag cggttgtagg tgtagaaaaa gctagatgat tttagtcgta gggcttggca
    12241 atataggcgt agagtatgaa aatacccgtc ataatgtcgg ttttatgcta attgacttac
    12301 ttttaaaaga aagcaatttt acaaatctta caaactctaa atttaaagga gagcttttta
    12361 aaataggttc ttctttactt cttcttaaac ctagtattta tatgaataat tcaggactta
    12421 gcgtaaaagc agtgaatgat ttttataaat gcgaaagaat gatagttatc catgatgata
    12481 tagatataaa tttaggagcc ttgcgcttta aaaaaggcgg ttcaagtggt ggacataatg
    12541 ggcttaaaag catagatact ttatgtggaa atgactatga aagagtgcgt ataggagtgg
    12601 gaaagggtga aaatgtgatt tcccatgttt taggtaaatt taaatccgaa gaagaaataa
    12661 ctttaagcaa agttttagag catacaaaaa aagctttgct tgagcttatt gaaaatgatg
    12721 atttgtctgc tatatcatcc aaatacagcc taaaggctta agatgtggat attttttcgt
    12781 tttatttcag ggatttattt aaaaaatttt tttattatat ttttttcttt acttggtttt
    12841 tattgcggta ttgatttact cttaaatttt aaagatctac caaaagccgc aaatcttgat
    12901 ttgctttatg ttatgttttt atctttttcg gcagtgcctt atgtattacc catttctttg
    12961 atttttgctt tggtagtttc tttgatttct atgatcagag caaatgaatt tgtaagtctt
    13021 tatgcgttag gactgagtag aaattatgtt attttatttc cttttttatg ggctttattt
    13081 ttttgttgta tttatatagg attgaatttt acttcttttg cttatgcaaa tgattataag
    13141 agaaatattt tgaaaaatgg cactattatg aatcaaagtg gagaagtgtt tttgaaattt
    13201 aacaataatt ttg
//
LOCUS       DARGBD010000042        13038 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.042, whole genome shotgun sequence.
ACCESSION   DARGBD010000042 DARGBD010000000
VERSION     DARGBD010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13038
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.042"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1312)
                     /locus_tag="SFZ04_000991"
     CDS             complement(<1..1312)
                     /locus_tag="SFZ04_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEG8065279.1"
                     /translation="MFKKIFDFVKSRLFITAFLLCCIFLLSILFWFWGSLVAFNDIYI
                     FSSSFLRFSIILIIWLIVFLFFLLKPIINFISSLKSEKRLKFKVLKKEADEFIYKSKR
                     NFFLSLKDAKETWKNDLKTKNLPLIIIIGNEGAGKSTFINYSDIEYPLSDSLESYKKF
                     HKSTRNFALYVSKKGALLDTEGNYFSQEEFFKPTSSDEIPEDDIDKNRDFLIKKNIWK
                     KFLTFLNKNFFHSKLNGIILVVDTVIFLNNPKEYSKNLIRYLTKRVNECEKTLNLKLP
                     IYIVFSKLDLIEGMKEYFDIFDKKISDKILGLSFDKILSEEFLNNEFKELSDSLLCSL
                     MSKNSHIYNIENKNKSYLFLKQLDNLFALAKTFILEVQEENKLKNNSYLRGVYFVSAY
                     QENIPRNFLLDAICEKYNCKKVLSKSNIIHNKQSYFVKSLLEDLI"
     gene            1430..1945
                     /locus_tag="SFZ04_000992"
     CDS             1430..1945
                     /locus_tag="SFZ04_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001142947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hcp family type VI secretion system effector"
                     /protein_id="HEG8065280.1"
                     /translation="MAEPAFIKIEGSTQGLISSGASTEASIGNRYKSGHEDEIMAQEV
                     SHIVTVPVDQQSGQPSGQRVHKPFSFTCSLNKSVPLLYNALTKGERLPTVEVHWFRTA
                     TSGGSEHFFTTKLEDAIITNIELIMPNAQESSNHDKTELLKVSMSYRKVVWEHTAAGT
                     SGSDDWREGKA"
     gene            complement(2195..2968)
                     /gene="icmH"
                     /locus_tag="SFZ04_000993"
     CDS             complement(2195..2968)
                     /gene="icmH"
                     /locus_tag="SFZ04_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system protein IcmH/DotU"
                     /protein_id="HEG8065281.1"
                     /translation="MKEINEEKKALSLLLDSDFDGLKNNKIIDYSLELLLLSYRLSKI
                     SSMDTSNINQLRETLINKILDITAKLSMCKEYDEKEIIKFKYCLCVFIDESLMKNELF
                     INFWAHNTLTVRLFDETLGGNNFYDIASSWINNPFKFKDFLEFIYACLILGYKGKYNE
                     TKDRDEKIIHFCNNIATSLKPVYKIEEELAFNKAYKTGLKENIWQKFIRLYFKKLIIV
                     VPVLIILGVLSYAIFNLETNNLKVDNNISVLIKNLTHIE"
     gene            complement(2965..4362)
                     /gene="tssK"
                     /locus_tag="SFZ04_000994"
     CDS             complement(2965..4362)
                     /gene="tssK"
                     /locus_tag="SFZ04_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HEG8065282.1"
                     /translation="MANKLKVAWFDGLNIGQTHFEQQERFFNRNIDLKTINIYSNLYG
                     IIDLEFSQEMLLQGKIALSKISGIAQDGSIFNAPEQDLLPEPIEINYESLIDSVVVLK
                     IPIGVTDIADLSLRNTFPNSKFICLRNSIALRNYDDSKSNVMDKIEDEYELENLTFTQ
                     EKKDLLLASLRLKLGILGNSTPDELELPIAKIKNIDINKKIELESDFIPTCLNISKIS
                     TIRSFLEEIIFSINQHKKVLSNVFKGIDQTKNTLDFSTFLSLNLLKKWYLIFSHLSKK
                     DKIHPEFLYEKFLEFQGELAAFSNEESFLDFIPYKHDNLYNTFLNMMNNLRLLFSKIT
                     SPKYFIAKTSINGNGFYDFIFDNSGILEESEIYFAIRADVTTEYLLNNFKIQSKIHTQ
                     SKIKNIVATQLEGLNVDQVPNVPSSIPYLNGYVYYKLDKRDQLFKDFKNESIISMYLT
                     NNIKNPDIIMWAVFQ"
     gene            complement(4372..4818)
                     /gene="tssJ"
                     /locus_tag="SFZ04_000995"
     CDS             complement(4372..4818)
                     /gene="tssJ"
                     /locus_tag="SFZ04_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system lipoprotein TssJ"
                     /protein_id="HEG8065283.1"
                     /translation="MFCKKSLFFLLPLFFCACSSVVSVKINNVENSNLNNRHDDVPVT
                     AIVYQLKDIKKFEEASDIDLATREEGVLGKDKLDSIKTQIAPKDNIIAVKVDEEEVPY
                     VGILVLFANNTKKTTKIWAKTEDANGFGKNKYLKFEISKEGIKRIK"
     gene            4944..6191
                     /locus_tag="SFZ04_000996"
     CDS             4944..6191
                     /locus_tag="SFZ04_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system domain-containing
                     protein"
                     /protein_id="HEG8065284.1"
                     /translation="MYFCDQLKNNLDELQEFQLLEDEMSKYKTLNHENISWDKVYQYS
                     QFILLNHSLDFKICNYFLLSCFNLNNEECFEKLLLLFQHLKKLIDENNAYILAQKRKI
                     QNFIQNFIQEYNKTKVLISSEIVNQFITLFSEFENLLSCNFAKIEIAQVAPQLPKSPV
                     TQVSVNIRSDNINSLNEREYKNFYQKLAFELLEEDENNLNIYALFTQAMWGKIRCLPE
                     CNNEKITKIRKPDADIIRILLSDKENDIEHIKCFMHELILNPFWIEGVQLFCDFLEKK
                     KKNKQLDILIILTSDFISKFDTIELLRFQNGDFICKEEVYKYFVKSKENKKSFFSSKK
                     TDKEHTLQDFEQMLMNIDKENFNNSIMNNINSLLDMVKIFESKGMKKNSKILNIYLVE
                     LMEKTLLKDYLAEEYENAKSKIK"
     gene            6260..6745
                     /gene="tssB"
                     /locus_tag="SFZ04_000997"
     CDS             6260..6745
                     /gene="tssB"
                     /locus_tag="SFZ04_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     small subunit"
                     /protein_id="HEG8065285.1"
                     /translation="MSDGSYAPKERINITYKAKTNGQNEDVELPLKLMVMANLKGKNE
                     TPLEEREILQINKINFDQVMRKLNITTSFSVKNTLGTGAEELDVKLNIASMKDFSPDS
                     LAKQIPELNKLLQLREALMALKGPMGNIPDFRKAVLEALKNEKTKEKLLLEIKQEEQG
                     N"
     gene            6747..8201
                     /gene="tssC"
                     /locus_tag="SFZ04_000998"
     CDS             6747..8201
                     /gene="tssC"
                     /locus_tag="SFZ04_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     large subunit"
                     /protein_id="HEG8065286.1"
                     /translation="MANTKAVDMPIIEQIMEKSKYSKTDESYSIAKRGVAEFISEIVK
                     SDNAEEKINKFALDEMIAHIDYLLSKQMDEVLHNEEFQKLESTWRGLRFLVERTDFNE
                     NIKIDLFDIRKEEALEDFENNPDITQSVVYKNIYSSEYGQFGGEPVGAIIGDYQLGSA
                     SPDMTFLNKMASIAAMSHSPFLTSFGPKFFGLDDYSELANIQDLQGLLEGPQYTRWRT
                     FRENEDSKYTGLLVTRFLARSPYDPEENPIKSFNYKENVHASHNHLLWANSSYTFCTR
                     LTESFAKYRWCGNIIGPKSGGTVKDLPTYLYENFGTIQSKIPTEVLITDRREYELAEA
                     GFITLTLRRDSNNAAFFSANSPLKPKLFQNTPEGKEAETNYRLGTQLPYIFLISRLAH
                     YLKVLQREEIGSWKERSDIENGLNEWIRQYISDQENPPSEVRSRRPFRAAQVKVSDIP
                     GEPGWYKIGLSVRPHFKYMGGNFELSLVGKLDKE"
     gene            8204..8596
                     /gene="tssE"
                     /locus_tag="SFZ04_000999"
     CDS             8204..8596
                     /gene="tssE"
                     /locus_tag="SFZ04_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HEG8065287.1"
                     /translation="MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNAKINDCY
                     AVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYEKRICVVSITYDNNLSPWQLSFI
                     VKCFFQDDRFKEFNIEIIFKNNRYCEVK"
     gene            8593..10314
                     /gene="tssF"
                     /locus_tag="SFZ04_001000"
     CDS             8593..10314
                     /gene="tssF"
                     /locus_tag="SFZ04_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HEG8065288.1"
                     /translation="MKDNIFYYQKELEYLYEKREYFIKNYPKLTPFLAYDSKDPDIER
                     IIENLAILSSKIHQELDENIPHIAESLINIVSPNYTNPLPSLCMQEFKFEQNSKENNL
                     IIPKGTLIKSKPIDKCVCEFKTVYDVYLYSISISEVFISSKNQDYTFNLTLQVNKAET
                     KICDLGLEKINLYLGNDTYMSSTLLLYMHSYLKELKIQSLDTDEEFFLNTYNIEKIGL
                     NPDESSLSYNDLGFEAFSLLREYFFMPHKFNFLRINGLDILNNCQGKTINIEFKFSKP
                     FPANCIFRKELLSLSMTPIINIFTKSAEPLINNHKKDSYRIFVDRSQPKAYEIIQTLQ
                     VKAHNSEGGKRLLKNYKSFERFEFLKDNQKDFYSVNTKKNSKGEVFSEISFFSSYIMD
                     ETISIDLLCSNGDLPSKLKIGDINTCDLKGVDTKNVEIPSETRRCSVDGNLLWKLVSV
                     LSFSYQTILSKKAFFGVLESYSFLDNQSNWKIYKLLQESIIDIQSKSTYLIDENITKK
                     GTLAIFSIKDSKFYTLGEVYLLGLIISKFLASFASINSFCELKIRCLDSKEILHYPAS
                     FGKKALI"
     gene            10311..11219
                     /gene="tssG"
                     /locus_tag="SFZ04_001001"
     CDS             10311..11219
                     /gene="tssG"
                     /locus_tag="SFZ04_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HEG8065289.1"
                     /translation="MNNLTSYSFFKLIKKLEKDYGRKNIFLRTNKSLKHPNKDIEKII
                     FSEHEQSVIELFINFMGLHGVSSQLPSFMLDKLSRNEDGDQGWTLFFDFFNHYLLWIF
                     FDVISLKNYPRSFNENFKDSISKILFSMLGIKEYDIAKKYLPFAPLLLSLRRPKTHIE
                     RVLQVNFKLKDKLSIIENLPHQILISNSQKNNLGIKNNILGNNFILGDKFISYQNKIA
                     IYIKDISYQEAVKFMPNGTKHDDLKNSIMFLTNNEFCVDLYLKINYSSEMKFVLGEEN
                     TAKLGWAKILGNTQKKYTIVYMKLCE"
     gene            11370..12785
                     /locus_tag="SFZ04_001002"
                     /pseudo
     CDS             11370..12785
                     /locus_tag="SFZ04_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049860.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4996 a         1702 c         1721 g         4619 t
ORIGIN      
        1 aaattaaatc ttcgagcagt gatttaacaa aatagctttg tttattatgt ataatattgg
       61 attttgataa tacttttttg cagttatatt tctcacatat ggcatcgagt aagaaatttc
      121 taggaatatt ttcttgatag gcactaacaa aataaactcc tctaagataa gaattatttt
      181 taagcttatt ttcttcttgc acttccaaaa taaaagtctt tgctaatgca aataaattat
      241 caagttgttt taaaaataag tagcttttat ttttattttc tatattataa atatgggagt
      301 ttttactcat caaggaacat aataatgaat cacttaattc tttaaattca ttatttaaaa
      361 attcttcact taagatttta tcaaaagata atcctaaaat tttatctgaa atttttttat
      421 cgaaaatatc aaaatactct ttcatgcctt cgatcaagtc gagttttgaa aaaactatat
      481 aaataggcag ttttaaattt aaagtttttt cacattcatt tactcttttt gttagatatc
      541 taataagatt tttggaatac tccttaggat tatttaagaa aattacagtg tcaacaacta
      601 aaataattcc atttagtttg ctatgaaaaa aatttttatt gagaaaagta aggaattttt
      661 tccatatatt ttttttaatt aaaaaatctc tatttttatc tatatcatct tcgggtattt
      721 catcgctact tgtaggctta aaaaattctt cttgtgaaaa atagtttcct tctgtatcta
      781 acaaagcacc tttttttgat acataaagtg caaaatttct agtagactta tggaattttt
      841 tataagactc taaactatca ctaagtgggt attcgatgtc agaataatta ataaaagtgc
      901 tttttccagc tccttcattt cctatgatga taattaaggg taaatttttt gtttttaaat
      961 cattcttcca tgtttctttg gcatctttaa gagataaaaa gaagtttctt ttagatttgt
     1021 aaatgaactc atcagcttct ttttttagga ctttaaattt taatcttttt tcacttttta
     1081 aagaagatat aaaatttata ataggcttta ataaaaaaaa caaaaaaaca ataagccaaa
     1141 ttatcaaaat aatactaaat cttaaaaatg aactactaaa aatatatatg tcattaaaag
     1201 ctactaaaga accccaaaac caaaataaaa tactcaaaag aaaaatacaa caaagcaaaa
     1261 aagcagttat aaataatctt gatttcacaa aatcaaatat ttttttaaac atcattattc
     1321 cttagtaaag taaaaacaaa ttaatatgca aatattttgc aaaaatttaa tagattaaga
     1381 ttaaaatgat acaattttga atgttaaaaa aaattaaagg agttttttta tggctgaacc
     1441 agcgtttata aaaattgaag gttccacaca aggtttgatt tcaagcggtg catctactga
     1501 agcgagtatt ggcaatagat ataaatcggg tcatgaagat gaaatcatgg ctcaagaggt
     1561 atctcatatt gtaaccgtac ctgttgatca gcaaagcgga caaccttctg gacaaagagt
     1621 tcataagcct ttttctttta cttgctcatt aaataaatct gtgcctttgc tatataatgc
     1681 acttaccaaa ggagaaagac ttccaacagt cgaagttcat tggtttagaa ccgcaacaag
     1741 tggcggatct gaacattttt ttactacaaa attggaagat gcaattatta caaatattga
     1801 attaataatg ccaaatgcgc aagagtcaag taatcatgat aaaaccgagc ttttaaaagt
     1861 ttcaatgagc tatagaaaag tagtttggga acatactgct gctggaacta gcggaagtga
     1921 tgattggaga gagggcaaag cttaattata atttatctta aataatcctg actaaaatac
     1981 ataattatag ttgggattgt atcgtgaatt atatccatgg cataattatg atacgacctt
     2041 atacttattt gtactaataa tttgcataat taaagcttgt ttttatatta tttttatcct
     2101 ttagatttgc atttgatttt tattctagct gtaaaataat ttttatttaa ttttactcat
     2161 aacaaataaa ttgatattta aaaatttagt atatttattc tatatgtgtt aaatttttta
     2221 tcaatacaga tatattatta tccactttaa gattatttgt ttctaaattg aaaattgcat
     2281 agcttaatac tcctaatata atcaatactg gcacaacgat aataagtttt ttaaaataca
     2341 atcttataaa tttttgccaa atattttctt tcaaaccagt tttatatgct ttattaaaag
     2401 ctaactcttc ttctatctta taaaccggtt ttaaagatgt ggcaatatta ttgcaaaaat
     2461 ggattatttt ttcatctcta tccttagtct cattatattt tcctttataa ccaagaatca
     2521 aacaagcata aataaattcc aaaaaatctt taaacttaaa agggttatta atccaagatg
     2581 atgcaatatc ataaaaatta tttccaccta aggtttcatc aaataatctt acagttagag
     2641 tattgtgagc ccaaaaatta ataaaaagtt catttttcat taagctttca tctataaaga
     2701 cacaaagaca atatttgaat ttaataattt ctttttcatc atattcttta cacatactta
     2761 gtttagcggt tatatctaaa attttattaa tcaatgtttc tctaagttga ttaatattac
     2821 ttgtatccat agagcttatt tttgaaagtc tataagaaag caaaagcaac tccaaagaat
     2881 aatcaataat tttattgttt tttaaaccat caaaatctga atcaagaagt aagcttaatg
     2941 cctttttttc ttcatttatt tctttcattg aaataccgcc cacattataa tatcagggtt
     3001 ttttatattg ttggtcaagt acatactaat gatactttca tttttaaaat ctttaaacag
     3061 ttgatctctt ttatctaatt tataataaac ataaccattt aaataaggaa tgctagatgg
     3121 aacattaggt acttgatcta catttaagcc ctcaagctga gttgcgacta tatttttaat
     3181 tttactttga gtatgtatct tgctttgaat tttaaaatta ttaagtagat attctgtagt
     3241 aacatctgca cggattgcga aataaatttc actttcttct aaaattcccg aattatcaaa
     3301 aataaaatca taaaaaccat tgccgttaat actggtctta gctataaaat atttagggct
     3361 tgtgatttta gaaaataaca atcttagatt attcatcata tttaaaaaag tattataaag
     3421 attatcgtgt ttataaggaa taaaatctaa aaaagattct tcgttgctaa aagctgcaag
     3481 ctctccttga aattctaaaa atttttcgta taaaaattca ggatgtattt tatctttttt
     3541 tgatagatgt gaaaatatta aataccattt ttttaaaaga ttaagggata aaaaagtgct
     3601 aaaatccaat gtattttttg tttgatcgat tcctttaaaa acattagata gaactttttt
     3661 atgttgattg attgaaaaaa taatttcttc caaaaaggat cttatggtag atattttgct
     3721 gatatttaag caagtgggta taaaatcact ttctaattca atttttttat tgatatcaat
     3781 atttttaatt tttgcaattg gtaattcaag ttcatcagga gttgaattac ctaaaatgcc
     3841 aagttttaat cttaaactag caagaagtaa atcttttttc tcttgtgtaa aagtcagatt
     3901 ttcaagttcg tactcatctt caattttgtc cattacatta gattttgaat catcataatt
     3961 tcttaaagca atactatttc taagacatat aaactttgaa tttggaaaag tatttcttaa
     4021 agataaatca gcaatatcag taactccgat aggaattttt aataccacaa ctgaatcaat
     4081 taaagattca taattgattt caataggctc aggcaacaaa tcttgctcag gtgcattaaa
     4141 aatgcttcca tcttgtgcga tacctgaaat tttagaaagt gcaatttttc cttgcaataa
     4201 catctcttga gaaaattcca agtctattat tccatataaa ttactatata tatttatagt
     4261 tttaagatct atatttctat taaaaaatct ttcttgctgc tcaaaatggg tttgtccaat
     4321 attaagtcca tcaaaccaag caacttttaa tttatttgcc atatattatt cctatttaat
     4381 tcttttgata ccttctttgg atatttcaaa ttttaaatac ttattcttcc caaacccatt
     4441 tgcatcttcg gtctttgccc atatttttgt tgtttttttt gtattatttg caaataatac
     4501 aagaatgcct acataaggaa cctcttcttc atctacttta accgcgataa tattgtcttt
     4561 aggtgcaatt tgcgttttaa tagaatcaag tttatccttg cctagtaccc cctcttctct
     4621 agtagccaaa tctatatcac ttgcttcttc aaatttttta atatccttaa gttgatatac
     4681 aatagccgta acaggaacat catcatgtct attattaaga ttggaattct ctacattatt
     4741 tatcttaaca ctaacaacac ttgagcaagc gcaaaagaat agtggcaata aaaaaaataa
     4801 gcttttttta caaaacatga aactaaagta tcctttctat cttagaatat ataatttatg
     4861 attaattgag taaatttttt aaaaaattaa cataatattt tttaaaattt aattataatg
     4921 aggcaaattt ttggaggaat taaatgtatt tttgtgatca attgaaaaat aatttagatg
     4981 aactacaaga atttcagtta cttgaagatg agatgtcaaa atataagact ttaaaccatg
     5041 aaaatatttc ttgggataaa gtttatcaat attctcagtt tatattatta aatcattctt
     5101 tagattttaa aatttgcaac tattttcttt tatcgtgttt taatttaaac aatgaagaat
     5161 gctttgaaaa gcttttgctt ctttttcaac atttaaaaaa acttatagat gaaaataatg
     5221 cttatatatt agctcaaaag cgaaaaattc aaaattttat tcaaaatttt attcaagaat
     5281 acaataaaac aaaagtgctt atatcatctg agattgttaa tcaatttatt actttatttt
     5341 ccgaatttga aaatttacta tcttgcaatt ttgcaaaaat tgaaattgct caagttgcac
     5401 cacaacttcc aaaatctcct gtaactcaag tatctgtaaa cattagaagc gataatatta
     5461 actctttaaa cgagagagaa tataaaaatt tttatcaaaa acttgcattt gagcttttgg
     5521 aagaggatga aaataatctc aatatctacg ctttattcac ccaagcaatg tggggaaaaa
     5581 tcaggtgttt gcctgaatgt aataatgaaa aaattactaa aataagaaaa cctgatgcag
     5641 atataattcg catattactt tctgataaag aaaatgatat agaacatatt aaatgtttta
     5701 tgcatgaact tattttaaat cctttttgga tagagggtgt acaactcttt tgtgattttt
     5761 tagaaaaaaa gaaaaaaaat aaacaattag acattcttat aatattaaca agtgatttta
     5821 tttctaaatt tgatactatt gaacttctcc gttttcaaaa tggtgatttt atctgcaaag
     5881 aagaagttta taaatatttt gttaaatcca aagaaaataa aaaaagtttt ttttcaagta
     5941 aaaaaactga caaagaacat acactacaag attttgagca aatgctgatg aatattgata
     6001 aagaaaattt taataattct attatgaata atattaattc cttgctagat atggtaaaaa
     6061 tttttgagtc aaaaggaatg aaaaagaact ctaaaatttt aaatatatac ttagtagagt
     6121 taatggagaa aactctacta aaagattatc tagccgaaga atacgaaaac gcaaaaagta
     6181 aaattaagtg atacaagatt aaatttagta aattttaata taattattaa actaaaaatt
     6241 ttgtttttaa ggattttaaa tgtcagatgg atcttatgct ccaaaagagc gaattaatat
     6301 tacatataaa gctaaaacta atggacaaaa tgaggatgtg gagttgccgt taaaattaat
     6361 ggtaatggca aatttaaaag gaaaaaacga aactccttta gaggaaagag aaattttgca
     6421 aattaataag attaattttg atcaagtcat gagaaaactc aatataacaa caagttttag
     6481 cgtaaaaaac actcttggaa caggagctga agaacttgat gttaagctca atattgctag
     6541 tatgaaggat ttttctccag atagcttagc taaacaaata cccgagctaa acaaattatt
     6601 gcagctaaga gaagcattaa tggctttaaa aggtcctatg ggtaatattc ctgattttag
     6661 aaaagctgtt ttagaagcgt taaaaaatga aaaaactaaa gaaaaattac ttttagaaat
     6721 taaacaagaa gagcaaggaa attaagatgg caaatactaa agcagttgat atgccaatta
     6781 ttgaacaaat tatggagaaa agcaaatact ctaaaaccga tgaaagttat agtattgcta
     6841 aaagaggtgt tgctgaattt atttcagaaa ttgtaaaaag cgacaatgct gaagaaaaaa
     6901 tcaataaatt tgcacttgat gaaatgatag cccatattga ttatttactc tcaaaacaaa
     6961 tggatgaagt tttacataat gaagaatttc aaaaacttga atctacttgg cgtggactta
     7021 gatttctagt tgaaagaact gattttaatg aaaatataaa aattgaccta tttgatataa
     7081 gaaaagaaga agctttagag gattttgaaa acaatccaga tataacacaa agcgttgttt
     7141 ataaaaatat atattcttca gaatatggac aatttggagg agagcctgta ggagcaatca
     7201 ttggagatta tcaacttgga tcagcaagtc ctgatatgac ttttttaaat aaaatggcta
     7261 gtattgcggc tatgagtcat tctccctttt taacatcttt tggaccaaaa ttttttgggc
     7321 ttgatgatta ttctgaactt gcaaatattc aagatttgca aggtttgcta gaaggtcctc
     7381 aatatacaag gtggagaact tttagagaaa atgaagactc taaatataca ggcttactag
     7441 tgacaagatt tttagcaaga agcccttatg atcctgaaga aaaccctatt aaaagcttta
     7501 actataaaga aaatgttcat gcttcgcata atcatttatt gtgggctaat tcttcgtata
     7561 ctttttgtac aagattaaca gaaagctttg ctaaatatag atggtgtgga aatattatag
     7621 gaccaaaaag tggagggact gttaaggatc tgcctactta tctttatgaa aattttggaa
     7681 ctatacaatc aaaaatacct acagaagttt tgattacaga taggagagag tatgaacttg
     7741 ctgaagcagg ttttataacc ttaacattaa gaagagatag taataatgca gcattttttt
     7801 cagcaaattc tccgttaaaa ccaaaattat ttcaaaatac cccagaaggt aaagaagctg
     7861 aaacaaatta cagattagga actcaacttc catatatctt tttaatttca agattggcgc
     7921 actatttaaa ggttttacaa cgagaagaaa tagggagctg gaaagaaaga agcgatattg
     7981 aaaatggact taatgaatgg attagacaat atatttccga tcaagaaaat ccaccttctg
     8041 aagtaagaag tcgtcgtcca tttagagcag cacaagtgaa agttagtgat ataccaggag
     8101 agccaggatg gtataaaata gggctaagtg tccgacctca ttttaaatat atgggtggta
     8161 attttgaact ttctttagta ggaaaattag ataaagaata ataatgtcct tgctagataa
     8221 actaatccat aatttagatg agcaaaacat tcatattcca ttctatcaaa atgattttga
     8281 ggatgtaaaa aacaatataa aggttttgct caatgcaaaa attaatgatt gttatgctgt
     8341 aaaaaattta ggaatgccta atatggctga tattaatctt aactctaatg aattatgcgt
     8401 atcaatggcc aaggaaataa gaaaactaat tgataactat gaaaaaagaa tatgtgtagt
     8461 ttctatcact tatgataata atttaagtcc ttggcaactt tcttttattg taaaatgttt
     8521 ttttcaggat gatcgtttta aagaatttaa tatagaaatc atctttaaaa acaatagata
     8581 ttgcgaggtt aaatgaagga taatattttt tattatcaaa aagagcttga atatctatat
     8641 gaaaaaagag agtattttat aaaaaattat ccaaagttaa caccattttt ggcatatgat
     8701 agcaaagatc ctgatataga aagaattatt gaaaatttag ctattttaag ctctaaaatc
     8761 catcaagagc ttgatgaaaa tataccacac attgcagaat ctttgattaa tattgtttct
     8821 ccaaattata caaatccttt accttcttta tgcatgcaag aatttaaatt tgaacaaaat
     8881 agtaaagaaa ataacttaat tattcccaaa ggaactctta ttaaatcaaa accaatagac
     8941 aaatgtgttt gtgaatttaa aacagtatat gatgtttatc tttattctat ctccatcagc
     9001 gaagttttta tatctagtaa aaatcaagat tatactttca atttaacttt gcaagtcaat
     9061 aaggcagaaa caaaaatatg tgatttgggt ttggaaaaaa ttaatttata tctaggcaat
     9121 gatacctata tgtctagtac tttattatta tacatgcatt cttatttaaa agaattaaaa
     9181 attcaaagtt tagatactga tgaagaattt tttcttaata cctataatat tgaaaaaata
     9241 ggattgaatc cagatgaaag tagtttatct tataatgatt taggttttga agcattttcc
     9301 ttactaagag aatatttttt catgccacat aaatttaatt ttttaagaat caatggtttg
     9361 gatattttaa ataattgtca aggaaagaca attaatattg aatttaaatt ctctaaacca
     9421 tttcctgcaa attgtatttt tagaaaagaa ttactttctt taagcatgac acctattatc
     9481 aatatcttta caaaaagtgc agaacctctt ataaataatc acaaaaaaga tagttataga
     9541 atttttgtgg atagaagcca acctaaagct tacgaaatca tacagacact acaggttaaa
     9601 gcacataata gtgaaggcgg caaaaggtta ttaaaaaact ataaaagttt tgaacgcttt
     9661 gaatttttaa aagataatca aaaggatttt tatagcgtaa atactaaaaa gaattccaaa
     9721 ggagaagtat ttagcgaaat ttctttcttt tcctcttata taatggatga aactataagt
     9781 attgatcttt tgtgctccaa tggagattta ccttcaaaat taaaaatagg tgatattaat
     9841 acctgcgatc taaaaggtgt cgataccaaa aatgtggaaa ttccaagcga aacaagaaga
     9901 tgtagtgttg atggtaattt attatggaag cttgtttctg tgttatcttt ttcatatcaa
     9961 acaatattga gcaaaaaagc tttttttggt gtgttggaaa gctatagctt tttagataat
    10021 caatcaaatt ggaagattta taagcttttg caagaatcta taatcgatat tcaaagtaaa
    10081 agcacttatt taatagatga aaatatcaca aaaaaaggga ccttagctat ttttagtatt
    10141 aaagattcga agttttacac tttaggcgag gtatatttat tgggattgat tatatctaaa
    10201 tttttagctt cttttgctag tattaactcc ttttgtgagt taaaaataag atgcctcgac
    10261 tcaaaagaaa ttttacatta ccctgcttct tttggaaaaa aagctttaat atgaataatc
    10321 ttacttcata tagttttttt aaattaataa aaaaattaga aaaagactat ggaagaaaga
    10381 atatattttt aagaacaaat aaaagtttaa aacatccaaa taaagatata gaaaaaatca
    10441 ttttttcaga acacgaacaa tcagttatag aattgtttat aaatttcatg gggctacatg
    10501 gagtctcttc acaacttcct tcatttatgc tagataaact gtcaagaaat gaagatggcg
    10561 accaaggttg gactctattc tttgatttct ttaatcatta tttgctttgg atattttttg
    10621 atgtaataag cttaaaaaat tatccacgat cttttaatga aaattttaaa gattctattt
    10681 caaaaatttt atttagcatg ttgggaatta aagaatacga tattgcaaaa aaatatttac
    10741 catttgcacc tttactacta agtttaagac gacctaaaac acacattgaa agagttttac
    10801 aggtcaattt taaacttaag gataaattat caattattga aaatttaccc catcaaattt
    10861 taatttcaaa ttcgcaaaaa aataacttag gaataaagaa caatatttta ggaaataatt
    10921 ttatattggg cgataaattt atctcttatc aaaacaaaat agcgatctat ataaaggata
    10981 tttcatatca agaagcggtt aaatttatgc ccaatggaac caaacacgat gatttaaaaa
    11041 atagcataat gtttttaaca aataatgaat tttgtgttga tttatatctt aaaatcaact
    11101 attcttcaga aatgaagttt gtgttaggag aagaaaatac tgccaaactt ggttgggcaa
    11161 aaattttagg taatacgcaa aaaaaatata caatagtata tatgaaacta tgtgaataag
    11221 ctgacacaaa aatatgttta aaaaaatcac aacctctctt cacccataaa ccatacccta
    11281 aaataaactt tattttaccc actttatgct aaaataaatc acataagctt ataggctatt
    11341 aatcatcaac aaacccaaaa ggatcatcaa tgtcccttaa ttcttacatg agtcttaata
    11401 tatcaaattc tacttcaaat cccctaccct ttaaaatcac taaagccctc atcaaagaaa
    11461 gtcttgaaga gcttttttct atagaatgtg aaggcttttt tgaaagttta gaacaagatt
    11521 tattttcttt aaatacttta accaatgctt catctcatcc aagcacccct acaactttta
    11581 attttcatcc taatgtttta atcgatcaag aagctatttt aagtatccat aatccttatg
    11641 agaataatac cttaaacttt gataacaatg aagtaaaaaa ctataaggga attatcactt
    11701 atataaaata tctaggtatt aatcatgaaa gtgctttaaa tattaatgat agcacttcaa
    11761 atactaagca aatacaatac aagcattttt tttcttttaa gcttcaatca gtcttgataa
    11821 gactttcttt aaataaagcc aatcgtattt atactcatac taatattata gaagtgatta
    11881 aacaaaccct tggtttttat caagatatct tacataaaga aattgattat tctaatatac
    11941 attttaatta tgaagaacaa gaactcatct ctcaatacaa tgaaagtgat ttagacttta
    12001 ttacaagatt aagccataat aatggaatct ttttttatga agatgagaac actatttatt
    12061 tttgtgatgt gtataaaaat gtaaaaaata aaaaaattga gtataatcct aatattaata
    12121 atattttaaa tcaagcttgt atttcttcta tttataaaga gcaaagctta agaactaatt
    12181 cttttacaca ttctagtatt aatgccaata ctcctttaaa tcttttatct ttacactcta
    12241 gtaaagttcc ttatgaacaa gaacttaata acaaagcttg ttataatgaa catttttatg
    12301 agagtgaata ttcttttaca aaaagcattg atttaaagac taagccttct cttaaagaaa
    12361 aaagagcctt agtattaaat gaaagcttac tagcaaaaag taatatttat catcttagct
    12421 taggagattt tatcacttta aattataagg agtttaatca tcaagaagaa ataaaaaatc
    12481 aagatgaaga aaaacaagat aaagcttctt tgcttaaaga ctttattatt atcgctaata
    12541 ctcaaatctt aattgatgat gccatcttag ctaattctat taatactaat gatcatttaa
    12601 atttaaaaga tttaaattta aataaatctt attctaatac tttaacttta ctaaaaaaga
    12661 atattatctt tactccaagt tttaaagcta aacctaaagc tcctaatagc actcaaggta
    12721 ttgttatagg agagagtaag gatatagaaa gtgagagaaa tactatttat actgatgagc
    12781 atggaagggt taaggtaagg attaatcttt atgccaatca agaagaatta gataatgata
    12841 cttttattgc aaatgatata gatacaaatt cttctaattt atcaagcaat acttataaat
    12901 cttatcatca cactcctttt ttaagagtag cttctcatat agcaagtaat cattcaggtt
    12961 tttttcatac tccaagaata ggagatgaag tgattatttc ttttttagat gatgatatag
    13021 ataaacctta tgtaagtg
//
LOCUS       DARGBD010000043        12883 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.043, whole genome shotgun sequence.
ACCESSION   DARGBD010000043 DARGBD010000000
VERSION     DARGBD010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12883
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.043"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..219
                     /locus_tag="SFZ04_001003"
     CDS             <1..219
                     /locus_tag="SFZ04_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065290.1"
                     /translation="LKSEQEQILLWMNNFNFLKDNNLSLIQKEKDLFEKDLKDLREIF
                     KKNAFEIGIWWFSKEKEDLEKRINESLK"
     gene            216..977
                     /locus_tag="SFZ04_001004"
     CDS             216..977
                     /locus_tag="SFZ04_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEG8065291.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLANELKLDLLSEIYVSRAALKLKKFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGSNQLHPSLRANEKIILHENTDLRAFKSEEKFELVT
                     CDVSFISLINLLYYVDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKECAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            943..1797
                     /locus_tag="SFZ04_001005"
     CDS             943..1797
                     /locus_tag="SFZ04_001005"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEG8065292.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKYLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFTSLKFIVVGYDF
                     SFGKNRAYSAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSRANLQKAKEFLGRN
                     YSIKGKVIKGQGLGSKELFATINLDCEGYFLPQNGVYATLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFTQGEFFELEFISFLRENQKFQDLKKLKNQITKDIEQARE
                     LLRKNDER"
     gene            1784..2494
                     /gene="cmoA"
                     /locus_tag="SFZ04_001006"
     CDS             1784..2494
                     /gene="cmoA"
                     /locus_tag="SFZ04_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HEG8065293.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(2484..2705)
                     /locus_tag="SFZ04_001007"
     CDS             complement(2484..2705)
                     /locus_tag="SFZ04_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG8065294.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(2702..3136)
                     /locus_tag="SFZ04_001008"
     CDS             complement(2702..3136)
                     /locus_tag="SFZ04_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG8065295.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKECKKS
                     GTLSEDCINALKVGVKPTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            complement(3194..3826)
                     /locus_tag="SFZ04_001009"
     CDS             complement(3194..3826)
                     /locus_tag="SFZ04_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEG8065296.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNRGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            complement(3837..4487)
                     /locus_tag="SFZ04_001010"
     CDS             complement(3837..4487)
                     /locus_tag="SFZ04_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEG8065297.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF"
     gene            complement(4484..5110)
                     /gene="nth"
                     /locus_tag="SFZ04_001011"
     CDS             complement(4484..5110)
                     /gene="nth"
                     /locus_tag="SFZ04_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEG8065298.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            5191..6012
                     /gene="peb4"
                     /locus_tag="SFZ04_001012"
     CDS             5191..6012
                     /gene="peb4"
                     /locus_tag="SFZ04_001012"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HEG8065299.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            6012..7076
                     /gene="fbaA"
                     /locus_tag="SFZ04_001013"
     CDS             6012..7076
                     /gene="fbaA"
                     /locus_tag="SFZ04_001013"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEG8065300.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            7171..8613
                     /locus_tag="SFZ04_001014"
     CDS             7171..8613
                     /locus_tag="SFZ04_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG8065301.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            8610..9563
                     /locus_tag="SFZ04_001015"
     CDS             8610..9563
                     /locus_tag="SFZ04_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEG8065302.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            9550..10425
                     /locus_tag="SFZ04_001016"
     CDS             9550..10425
                     /locus_tag="SFZ04_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HEG8065303.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKLV"
     gene            complement(10417..11760)
                     /locus_tag="SFZ04_001017"
     CDS             complement(10417..11760)
                     /locus_tag="SFZ04_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG8065304.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFILTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(11811..12479)
                     /locus_tag="SFZ04_001018"
     CDS             complement(11811..12479)
                     /locus_tag="SFZ04_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEG8065305.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQFS
                     NAILQVSEPRKPCVKISKIHNNPNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            complement(12476..>12883)
                     /locus_tag="SFZ04_001019"
     CDS             complement(12476..>12883)
                     /locus_tag="SFZ04_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin fold domain-containing protein"
                     /protein_id="HEG8065306.1"
                     /translation="GGLFGAKNFLNPLNFNTISASKHALSYDYINNFEQLKQEIQTNT
                     KPIMLDFTASWCENCKLLDELTFSDERIIQKMQNYKLIKVDVSENNNEQIKTMKEFNV
                     FGPPVLIFFENGKEKLKITGFISADDLLKKIEP"
BASE COUNT         4666 a         1628 c         2166 g         4423 t
ORIGIN      
        1 ttaaaatccg aacaagagca aatactttta tggatgaata attttaattt tttaaaagat
       61 aataacttaa gtttaattca aaaagaaaaa gatctttttg aaaaagatct taaagatctt
      121 agagaaattt ttaaaaaaaa tgcttttgaa ataggtattt ggtggttttc taaagaaaaa
      181 gaagacttag aaaaaagaat aaatgagagt ttaaaatgag atttgatttt tttgtttcaa
      241 agcgtttaaa tatcagtaga aataaagcct tagagcttat agaaaatgaa gagattttac
      301 ttaatggtaa gagttttaaa gcttcttttg atgtgaaaaa ttttttagaa aatttaaaaa
      361 aaacgcaaga tttaaatcct gaagatatac ttttagccaa tgagttaaaa ttggatcttt
      421 taagtgaaat ttatgtttca agagcagctt tgaaattaaa aaaattttta gaagaaaatg
      481 atattgaaat aaaacataaa aattgtcttg atataggatc tagtacgggc ggttttgttc
      541 aaattttact tgaaaatcag gctttaaaaa tcactgctct tgatgtgggt agtaatcaac
      601 tccatccaag tttaagagca aatgaaaaaa ttatcttgca tgaaaataca gatcttagag
      661 cctttaaaag tgaagaaaaa tttgaacttg ttacttgtga tgtgagtttt atttctctta
      721 ttaatttact ttattatgtc gataatttag ctttaaagga aattatttta ctttttaaac
      781 ctcagtttga agtgggaaaa aatatcaaaa gagataaaaa aggtgtttta aaagatgaca
      841 aggcaatctt aaaagcaaga atggattttg aaaaagaatg tgctaagtta ggttggcttt
      901 taaaaaatac gcaaaaatca agcattaaag gaaaggaagg taatgttgaa tatttttact
      961 actatatcaa aaattaatat tacttcttta gccataggtt gttttgatgg tatgcattta
     1021 ggacatctaa aacttgtaaa atatttagat gagaatgggg ctttgctagt tattaataaa
     1081 tttaaaggtc aatttctttg ttcaaatcgt caaaaagaag aaatttcagg aaaaaaagtt
     1141 atagaagtgg attttgaaag tataaaatct ttagatggta aagatttttt aagctttttg
     1201 aaaaaagaat ttaccagttt aaaatttata gtcgtgggtt atgatttttc ttttgggaaa
     1261 aatagggctt atagtgctaa agatattgag tttttaagtg ggataaaaac tataatagtt
     1321 gatgaattta gcataggtgg aataggtgtt catgcaagtt taattaagga ttttttatca
     1381 agagcaaatt tgcaaaaagc aaaagaattt ttagggagaa attatagcat caaaggaaag
     1441 gtaattaaag gacaaggctt aggttctaaa gaactttttg caactataaa tttagattgc
     1501 gaaggttatt ttttgcctca aaatggtgtt tacgctactt tgttaaaaag tcaaagaaaa
     1561 acttataaaa gtgtgagttt tttaggtgta agatcaagcg atgaaaattt tgctatagaa
     1621 agtcatattt tagaagaatt gggtgaaaat ttcacgcaag gagagttttt tgaactcgag
     1681 tttatatctt ttctaagaga gaatcaaaaa tttcaagatc taaaaaaact taaaaatcaa
     1741 attactaaag atatagaaca ggctagagaa ttattaagga aaaatgatga aagatgaact
     1801 ttttaaacaa agccctaaaa aacaatttga atttgataaa agcgtggcta gtgtttttga
     1861 tgatatgatc aatcgttctg taccatttta tagagaaaat ttagaacttt gtggcaattt
     1921 attggctaaa attttaccta caaatgcaag tgtttgcgat ttgggctgct caagtgctaa
     1981 ttttttgatt tttttggcaa atctaagaaa ggattttaaa ctttttggcg tggataattc
     2041 tgcttccatg cttgaagttg caaaatcaaa agctaaagct tatgggcttg atataagttt
     2101 ttttgaagct aatttatgcg aatttgattt ttttacttgc gatgtttttg tagcaaatta
     2161 taccatgcag tttattcgtc ctcctaaaag acaagaattg cttgatcaaa tttataaaaa
     2221 tttaaactct aaaggcattt tgattatgag tgaaaaaatc ctttatgaag atgctttttt
     2281 gtctaaaaat atcatagaac tttatgctga ttataaagaa aaacaaggct attctaagtt
     2341 tgaaatcgca gctaaaagag aagctttgga aaatgtttta attccttata gtcaaaaaga
     2401 aaatttaaat atgctagaaa aggcaggttt taagaaaata gaaagtattt ttaaatgggc
     2461 aaattttgaa actttcatag cttttaagga ttagaaatat tttcatcttc ccattcatct
     2521 tttggaaaac ctatcttata tgcattaaca caatcttgac taatgatagc tttgtgtctg
     2581 cattctaaac ttcttttttt tgcttcctcg gggtgatttt gataatattc tacacttttg
     2641 gtttgttcgc atgctgcaaa aaatatacca ataaggctta aaaaaagagt tattttcatg
     2701 gtcatttttc ctgtgtcata ttaacatcat cgctaaagat agaactttga ttgttttctg
     2761 ttgttttgga aggataaatt tcagaaggtg tttctgctat aggtggtatt ataatacttt
     2821 cattattttc tgaactttgg ttaatatctt ttgtggtttt ttcttttttt aaatcatttt
     2881 gttttaaagc ttctaatatt tgattatcag attttttcgg tgtgtttgga ctgtatttac
     2941 cctcttcatt tgttggttta acaccaactt ttaatgcatt aatacaatct tcgctaagag
     3001 ttccgctttt tttgcattct ttcgcttttt cttttgcttc gctaggaaga tttttgtagt
     3061 aattttctgt tttactatca caagctgtta tattaataac tattaaaatt gcaagtaaaa
     3121 tacttagtct tcgcatttat caatctccta aaatttttaa tatcttagca aacttgtata
     3181 aagcaacgat aaattatttt tcttcattgt aagaaaaaat aggtaaagac cattgatatt
     3241 tgatagctaa aagccttgca aaaactccta taaaaagagt taaaagtgtg caaactaggg
     3301 cattaagctc aagccaaatt attagagaat aatagattgc tcctgcaatt atggcaattc
     3361 ctgcataaat ttctttttga aacaccaagg ggattctcat acataaaata tctcttaaaa
     3421 ttccaccaaa aacaccggta attacagcag cagcaacggc tatgataaag ccacggtttt
     3481 gatctatggc tatttgagct ccaagtatgc taaaaacaac aagtcctata gcatcaagag
     3541 ttagaaataa agtttcaagt ttggttacta cgcgcggaat ttttgtggct acaagggcgc
     3601 aaaaacagat taaaataata tattcaggat gtttaaccca agttaaagga taatgtccta
     3661 aaagcacatc tcttatgctt ccgcctccaa ttgctgttac gagagcaata aaaataactc
     3721 caaaaagatc cattttatgg cgtcctgcag ctaaagcccc tgtcattcct tctgcggaaa
     3781 tacctatgat ataaagagtg gttatcgtaa gagcatttat ctccataatt tataccttaa
     3841 aatttatcac aatttatttg atactgttta atattttcat catttacttc atggtttggt
     3901 acttgatagc attctttaaa tttcggagtt ttaataattt ttacataaaa acttggtata
     3961 gcaatacggc ttttaatgta ttgtggttct ttatcgtaaa gtactaaatt taaaacttcg
     4021 atactttgaa attctaaagc taaatttctt tctctttgtt cgatttcatt ccaaatttta
     4081 ttatttattt gtgcattttg tggggtaata ttactcatta aaaatactga attttgagca
     4141 gctttactaa agctaaaaga agcattgggt gcagtgtgtc ctcgtgtgta accactgttt
     4201 ttataattac tccaagtagt gcggtatttt ttaggaatat ttgtatcatc ttcaaagcga
     4261 gggcgttttt tgatttgtct atctttcaaa tttgaagctt ctaccttata agcaacagct
     4321 tttgtgcctt tgagtttata atcatagcaa tttagataaa aaaacttatc taagatttgc
     4381 gagcaattta tattgttaaa ataagaagaa aaatcagcac taggcttgta aggttctaag
     4441 gcaaaaatat taagagatat agtgagtaaa aagatgaaaa ttttcattta agttccttat
     4501 ctttactttt gcaaagatga tttaaaaagc attctttaca taaaggtttt ttagctttac
     4561 aggtgtaacg tccaaaaaga accatggctt gatgaagata gttaagatta tctttaaatg
     4621 tgcgtgttaa atcttcttct gtagcttctg gagtttttgc tttgctaagt cctaagcggt
     4681 gagaaactct aaaaacatga gtatctacag ccatgaaatt tgctccgcac cattctatta
     4741 aaactacatg agcggttttt tgtcctacgc ctgctaagga ttttaaattt tgttcatcaa
     4801 ggggaatttc tccgtcaaaa ttttcacaaa ctgcttttgc catttttata agattttgtg
     4861 ctttattatt aaaaaatgaa caagtttgta tataggtttt aagacttgat aaatttgcat
     4921 ttgcaaggga tttaatatca ggataagctt taaaaagatc aggagtgatg agattaactc
     4981 ttttatcagt gcattgggct gaaagcatta cgcagactaa aagctcatat aaatttgaaa
     5041 atttaagctc tgttacaggc ttgtcaaaat gttttaaaaa aagttctttg atttctaaat
     5101 ttcttttcat tttttaattt tagttaatta gctttaaacc aagtttagat ataattgatt
     5161 ttatatacat tttattaaaa aggaaaccta atgaaaaaat tttctttagt cgcagcaact
     5221 ttgattgcag gtgtagtttt aaatgtaaat gcagctacag tagctactgt taatggcaag
     5281 agcattagcg atacagaagt aagtgaattt tttgccccta tgcttagagg acaggatttt
     5341 aaaactttgc cagataatca aaaaaaagct cttattcagc aatatattat gcaagattta
     5401 attttgcaag atgctaaaaa acaaaattta gaaaaagacc ctttatacac aaaagaactt
     5461 gatcgtgcaa aagatgcaat acttgttaat gtttatcaag agaaaatttt aaatactatt
     5521 aaaattgatg cggctaaagt taaagctttt tatgatcaaa ataaagacaa atatgtaaaa
     5581 cctgcaagag tgcaagcaaa acatatctta gtagcgacag aaaaagaagc taaggatatt
     5641 attaacgaac ttaaaggttt aaaaggtaaa gaactagatg ctaaatttag cgagcttgct
     5701 aaagagaaat caattgatcc aggttcaaaa aaccaaggtg gtgagcttgg ttggtttgat
     5761 caatcaacta tggtaaagcc ttttacagat gctgctttcg cgcttaaaaa tggtactatt
     5821 actacaactc cggtaaaaac gaattttggt tatcatgtaa tcttaaaaga aaattcgcaa
     5881 gctaaaggtc aaatcaaatt tgatgaagta aaacaaggta ttgaaaacgg acttaaattt
     5941 gaagaattta aaaaagttat caatcaaaaa ggccaagatc tcttaaatag tgctaaagtg
     6001 gaatataaat aatgggtgtt ttagacattg taaaagcagg ggtgattagc ggagatgagc
     6061 ttaataaaat ttatgactat gctaaagcag agggttttgc tatccctgct gttaatgttg
     6121 taggaactga ttctattaat gcagttttag aagctgcaaa aaaagttaac tctccagtta
     6181 ttatccagtt ttcaaatggt ggggcaaaat tttatgcagg gaaaaattgt cctaatggag
     6241 aagttttagg tgcaattagt ggggctaaac atgtacattt acttgctaaa gcttatggtg
     6301 tacctgtgat tttacacact gatcatgctg caagaaaact tttgccttgg attgatgggc
     6361 ttattgaggc aaatgcacaa tataaaaaaa cccatggaca agctttattt agttctcata
     6421 tgcttgatct tagcgaagaa agtttagaag aaaatcttag cacttgtgaa gtttatcttc
     6481 aaaaacttga tgctttaggt gtcgcgcttg aaatagaatt aggttgtaca ggtggcgaag
     6541 aagatggagt ggataataca ggtattgata attccaagct ttatacccaa ccagaagatg
     6601 tagctcttgc atatgaaaga cttggaaaaa ttagtgataa attttcaatc gcagcaagct
     6661 ttggaaatgt acatggagtt tacaagccag gaaatgttag cttacaacct gaaattttaa
     6721 aaaattcgca aaaatttgta aaagataaat ttgctttaaa tagcgataag cctataaatt
     6781 ttgtatttca tggcggtagc ggtagtgagc taaaagatat taaaaatgca gtaagctatg
     6841 gcgtaattaa gatgaatatt gacacagata ctcaatgggc tttttgggat ggggtgcgtg
     6901 aatatgaact taaaaatagg gcttatttgc aaggacaaat tggaaatcca gaaggtgatg
     6961 acaagccaaa taaaaaatac tatgatccgc gtgtttggtt aagaagcggt gaagaaagca
     7021 tgataaaacg tcttgaaatc gcttttgaag atttaaactg tataaacaaa aactaagcat
     7081 tttaaaagct tagttttatt ttgttttaaa aatttttatc aaattaagta gcaatcttta
     7141 aaataaaatt tttaatgagg tattggtttc atggatatta aatcagatga aatttcagaa
     7201 cttgttttgc ctgaaggcaa agatgcaaga ggttctttgg tttattttaa aattattttt
     7261 attccagctt ttctttatat tttgatttta ttgggttatt ttaatgtaat tgactttaag
     7321 gtcgaattac atacggttat tatgacaggt gtgatttttt ttacagcatt gatttttgct
     7381 agacatagtg ctgagtatgc gtatagtatt tttgaacaac aaaaagatga atttaaacag
     7441 gctttaaaaa gacatattat gaggcatttt cttgccatag ggaaagacac gaaatcaaat
     7501 gccaattttg atgactttgc ttatacatat attaagggtg caagaaatga gaattttgct
     7561 agtataggtt cggcaatttt tccaatgatg ggaattttag gaacttttat cagtatagct
     7621 ttttcaatgc caaattttag ttctagtgat acagccgctt tagaacaaga aattgcagat
     7681 ttgttaagtg gagtgggaac tgctttttat gtttcaattt atggaatttt tcttgcatta
     7741 tggtggatgt tttttgaaaa atatggtaaa agcaaaatag atcgtttgct aaatcgtcaa
     7801 aaaaacgcta caagtggatt tttttggaca aaagaagagc ttgatcaaag atatttaact
     7861 gaaagtttgc aacattttga aaaaattgga gcaattttta aacaagttag taatgatgat
     7921 ttttttgcag agcttgatca tgctattgat agaaaatttg gtattttcca agatatgcta
     7981 aatgtagaag aaaaggctat tagattaagt agtgaacata tcaaacaaac catgggtgag
     8041 cttagtaaag cacaaagaga tcaacgcgat cttggaaagc tttatagtga aatgttaaat
     8101 ggtataggtt tgctcaatca aaatttaaaa gaaatcaata caagaatgtc agaacaatat
     8161 aatcgcttgc ttgatatcag tagtgataaa attcatcatc ttgataagac actaagtgca
     8221 ttcgatgaaa aaatagagcg ttttggtaaa aattttgaac tttatgaaaa agcaatgttg
     8281 gaaagtcaag aaaaggtttt tgagggattt aaagcaagct tgtttgaagg tatgcataaa
     8341 tttaaagaag tatatgaaga agaaaaaagt attgatgcta aaatcaaaat gatggatgag
     8401 cttaaaaaag aaatgaaagc acttgatgaa gaaacaagtc aaatgatgag caagctttct
     8461 ggggatgaaa atcagaataa agaaaatgaa accaaacaaa tagaagattt ttcagagtct
     8521 aagactgaag aaaatcaaga tgaaattcaa gcagaaatat ctaagcaaga aagcaatgat
     8581 gagctaaaaa atgaagataa agaaaataaa tgaaaaatga gtcaaaagaa gatagcaatt
     8641 tttggatagc ttatgctgat ttaatggcag gattgctgtt tgtttttatt ttgctaatag
     8701 gtgctattgt tgtaaaatat gttttaactc aaagtgattt aaaagaaatc aaagataatc
     8761 tcaataaaca agaggcacgc ttagaggaga gtaaagaaga gcttagaaat aaagaagcca
     8821 tagtgtttaa actaagttct gatttaaaca atgcttctag tgctttaaat cttgctaatt
     8881 ctcaaaaagc agaattagag gctaatatta caaattacaa gcagttaagt aaagatttaa
     8941 actcaacttt agataataaa gataagcaaa ttttgatttt actaggtcaa ctagagaaaa
     9001 aagatgaaga gcttaaaaat ttacaagaag attttcaaaa agctaaagaa aaggtgcaaa
     9061 atcttggttt gattcgtgaa aatttaagca aggaattaca aagtaagctt gataataata
     9121 tcactataga tgaaaagaca ggatctattt ctttgcctgc tgaagtactt tttgataaag
     9181 attcttatgt gttaaaaaat gaggcaaagg caagtttgag aaaaatctta agcgaatatt
     9241 ttgatgctat tcttgaagat ccaaaaattt tttctaacat tgaaaatatc attattgaag
     9301 gacatactga tagtgatgga tcttatattt ataatttaga tttgtcgcaa aaaagagctt
     9361 atgaggtgat gaattttatc tatacttttt ataagagtga taagcttcaa aagcttttaa
     9421 tggcaagtgg acgttctttt tcagatcctg tgtttgtcaa cggagttgaa gataaggata
     9481 agagtcgtcg catagaaata aaatttagca ttaaaaatga taatgcttta aaggatgtag
     9541 aaaaattctt tgaatttcat taaaacaatt agtcctatac aaaaaatcaa ttttaacgga
     9601 tttgaatttt atattaaaag agatgattta ttaggggaaa ttaatggaaa taaagctagg
     9661 aaacttgctt tttatatcca tcaaagatat cctaaaaatc aatcttttgt aagttatgga
     9721 ggaagccaaa gtaatgcttt ggcggcatta agtatttttg ctaaacaaag atcatataag
     9781 cttgtttttg cttgtgaaaa aatttctact tttcttaaga ataatccttg tggaaactat
     9841 gctttagctt tagaaaatgg tgttgatttt gtagaaaata tccattcttt atccttaaag
     9901 caatttgctt tgtctttgtg taaaaaagat gatgttttta tagaacaagg tatagctaat
     9961 ttagaagctc aatatggcta tatggaactt gctcaagaaa ttcaaatgca aagtcaaagt
    10021 ttaaagcttg attttgatat ttttttacct tcgggtacag gcacttcggc agcttttttg
    10081 gcaaagtatt ctaaatttaa agtatttact tgcgcttgtg taggtgatat taaatatctt
    10141 aaaaaacaaa ttttaacatt agatccaagc tatgattttt caaatttaga atttttaaca
    10201 agtgataaaa aatatcactt tgctaagccg tataaagaat tttatgagct ttatatggat
    10261 ttaaagttaa agtgcaatat agaatttgac ttgttgtatg atattttagg attaagtata
    10321 gcattaaaac aagagtggaa aaaaccattg ctttatatac atcaaggtgg aattttagga
    10381 aattccacta tgctagagag atataaattt aaaaaactag tttaaaattc catagataaa
    10441 aatgattaaa ataatcaaag gcactatata ttttacataa taaaaccaaa ttccaaacca
    10501 tgaactttta agtgtattgt tattgctaag ttcttttaga ctttcttgtt tacctaaaat
    10561 ccaacctaca taaatgcagc aaaaaaatgc agttaaaata aacaaaatat ttccactaat
    10621 gaaatcaaaa ctatcaaaaa tgttttttcc tttgatgata acaatatcac gccaaggccc
    10681 ataagttaga atacagggaa gattgccaag tatgaagata aaccctagag ttaggttaat
    10741 agaaagattt ttagaatatt taaatttttc ttctaatacg ctaataataa cttgataaat
    10801 tggcaagctt gtggttaaag ctgcaatcaa gagtaagaca aaaaataaaa tacacacaat
    10861 agtgccaaaa tggatatgag aaaatgctat aggtaaagtt tcaaaaacca aagaaggccc
    10921 gctatctgga gcaagtcccg ctgagaaaag tgctggaaaa atcataaaac cagccaaaac
    10981 agctatgata gtatttaaaa cccctgtata aatagcggtt tttgccatat tttcattttt
    11041 attaagatga gatgaaagtg ttatcattac cccaaaacct agggataaag caaaaaagac
    11101 ttgtcctaaa acatcgatta aaagttttgg tgataaaatt ttactaaaat caggttcaag
    11161 ataaaattta actccagcca tagctccatc aagggttaaa ttgcgtccta caacaataat
    11221 aagacagata aataataaag gcattaaaaa ttttacggat ttttctatac catctataat
    11281 gcctcttttt aaaataatat aattaataat tacaaaaaca gtggtaaaaa taccaactcc
    11341 taaaggattg aaggctattt tgtcgttaaa aaactgatga gtaaattctt tgcttactac
    11401 attggcaaga ctaaaattcc ctagggttaa ttcccaaata taaactaaaa cccatcctcc
    11461 aagtaccatg tagtaagcca ttatgccaaa gcttcctaaa agtcccatat atccaatact
    11521 ttgccatttt tgtttgaaag catctacgct atttgtcatc gcttttctgc ctatgacatt
    11581 ttcaactaaa ataacaggaa tgcctatgat aatcatggct atacaaaaaa ctaatacata
    11641 agcaccgcca ccattttctc ctacaagata gggaaaacgc caagttgctc caaatcctat
    11701 ggttgctcca gcaactgtta gaatataagt tagtgtgcta ctccatgttt gtctttgcat
    11761 gattatcctt tcgaaaaaga attattttac ctaaaaataa ctttaaaaac ttataagcta
    11821 tccatatagc ttatatcgta agtatttttt aagcgtttgt gtatcgtttc gtgccaattt
    11881 tgagatatga gagagtttaa tttttctaat ttatctaata aattcggatt ttgcttaaga
    11941 atttgatgcg gggagtaaaa aagttgattg agttcaaata cactaagtga agtagaattt
    12001 ttttctaaaa ttttaatgtt ttcatgcttt cgtatttgtc caacttgtaa aactttataa
    12061 taccatccac tcaagcccgt tttaaaaatt tcatgtgtaa aatttggatt attgtgaatt
    12121 ttagaaattt ttacacaagg ttttctaggt tcgcttactt gcagtattgc atttgaaaat
    12181 tgatgtatat cacctatgca aacattttgt tcacaaagcc catcgatgct caaattttca
    12241 cccattgagc caaaatttag ctttttatta agaaatcttt cccatatagg atagttttga
    12301 caagagttgg caaaaatagc cttatggtag cctccatgat gaattttatc agctatttga
    12361 tcatctaaaa cacctagaaa atcaatttgt gtttcttcta ggtaagtatc tttaataaat
    12421 gcgctttgga aatttttata gtttttaatt ttccctattt gcaaactttg aattttcatg
    12481 gttctatttt ttttaataaa tcatcagcac tgataaaacc cgtgattttt aatttttctt
    12541 ttccattttc aaagaaaatt aaaacaggtg ggccaaaaac attaaattct ttcatggttt
    12601 taatttgttc attattattt tcgcttacat caactttgat aagtttgtaa ttttgcattt
    12661 tttgtatgat tctttcatcg ctaaaggtta attcatctaa aagtttgcaa ttttcacacc
    12721 aagatgcagt aaaatcaagc attataggct ttgtatttgt ttgtatttct tgctttaatt
    12781 gttcaaaatt gttgatataa tcatagctta aagcatgttt tgaggcagat atagtattga
    12841 aatttaaagg atttaagaaa tttttagccc caaaaagtcc tcc
//
LOCUS       DARGBD010000044        12798 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.044, whole genome shotgun sequence.
ACCESSION   DARGBD010000044 DARGBD010000000
VERSION     DARGBD010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12798
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.044"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..909
                     /gene="flhF"
                     /locus_tag="SFZ04_001020"
     CDS             <1..909
                     /gene="flhF"
                     /locus_tag="SFZ04_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEG8065307.1"
                     /translation="KQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPPEFASIYKQ
                     AKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVESDIKKQKI
                     MMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPI
                     IDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAEIDVNLVVS
                     ANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSFFSIGQEVP
                     DDLEVANSDFLVHCILEGFNKGKNNE"
     gene            902..1768
                     /gene="flhG"
                     /locus_tag="SFZ04_001021"
     CDS             902..1768
                     /gene="flhG"
                     /locus_tag="SFZ04_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HEG8065308.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            1787..2143
                     /locus_tag="SFZ04_001022"
     CDS             1787..2143
                     /locus_tag="SFZ04_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065309.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            2124..2816
                     /locus_tag="SFZ04_001023"
     CDS             2124..2816
                     /locus_tag="SFZ04_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HEG8065310.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            2816..3895
                     /gene="fliM"
                     /locus_tag="SFZ04_001024"
     CDS             2816..3895
                     /gene="fliM"
                     /locus_tag="SFZ04_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEG8065311.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            3892..4734
                     /gene="fliY"
                     /locus_tag="SFZ04_001025"
     CDS             3892..4734
                     /gene="fliY"
                     /locus_tag="SFZ04_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HEG8065312.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(4783..5382)
                     /locus_tag="SFZ04_001026"
     CDS             complement(4783..5382)
                     /locus_tag="SFZ04_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEG8065313.1"
                     /translation="MEKILKILLFLPILTLSTKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDQKKFDELELLKIMSGQELYTDMVSFADLSDAVKKLGYESNSYQI
                     NRENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKSQFFSIW
                     DRYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(5367..6221)
                     /locus_tag="SFZ04_001027"
     CDS             complement(5367..6221)
                     /locus_tag="SFZ04_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065314.1"
                     /translation="MKKIFLTFMVLVNCVFASDELNIDSLFKKQIGLRSITSFSLLST
                     GNANSYSLYPNITIGGDPTIWNDTKQVFLTQTFIYTLTPKFDILISGGGSYARQEYTN
                     FFTNAYSHKDRIGFDNLWLGFIYTGDSIADLIPQITFQTAVVQREKAINQTKNFYLKS
                     QSLQASLRGYSDPVVYSIYTGFGYNQSRKFKTLKIEYGNSIYVGGDLSIILSPKITLD
                     LGAEQRFQMKQKINGYQNSEVRSIPTLSLGSTYSINSDTAVSVNASFGGSSASPDSIF
                     GISLWKKF"
     gene            6655..7150
                     /locus_tag="SFZ04_001028"
                     /pseudo
     CDS             6655..7150
                     /locus_tag="SFZ04_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779308.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            7164..7952
                     /locus_tag="SFZ04_001029"
     CDS             7164..7952
                     /locus_tag="SFZ04_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065315.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNPKIFGLDESISKKDMQEFNNFMKSNALKDPNKIEKSPLKDFNPAYTKWDP
                     TTEKMMLGFFVSYSKMFHLGYDIIKKADEFYKEFDALISKDLSLNEFKTKYIDFKQRY
                     DEFVKEYEMAMGDKMLLSSDDEIITQQSEKPFKAIQGESKNKETYKDDSTRNELVKKL
                     LEGKFSTSKELELLFGMKFSDDDAGEFNKILSLNSTPKSIDIKA"
     gene            8073..8678
                     /locus_tag="SFZ04_001030"
     CDS             8073..8678
                     /locus_tag="SFZ04_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEG8065316.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            8678..9694
                     /gene="mnmA"
                     /locus_tag="SFZ04_001031"
     CDS             8678..9694
                     /gene="mnmA"
                     /locus_tag="SFZ04_001031"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEG8065317.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(9722..9967)
                     /locus_tag="SFZ04_001032"
     CDS             complement(9722..9967)
                     /locus_tag="SFZ04_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8065318.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYAIGTASVIFGT
                     GCVTLKKWWSIGFVISIVDIVVMIAVGLFWWKILGFY"
     gene            complement(10090..10353)
                     /locus_tag="SFZ04_001033"
     CDS             complement(10090..10353)
                     /locus_tag="SFZ04_001033"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8065319.1"
                     /translation="MKKSCSVFLSRFYFYGLELWACFFGISLDATSVALLGLSLVLIS
                     GVLTFGEVLAEKAAWNTLVWFSALVMMATLFGKLGVTQFLAEA"
     gene            complement(10268..10492)
                     /locus_tag="SFZ04_001034"
     CDS             complement(10268..10492)
                     /locus_tag="SFZ04_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8065320.1"
                     /translation="MFLPGIAAMLLMPLMLYFLSPLEIKSTPNASTFAKDKLKELVKM
                     KNSEKIMLSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(10546..10944)
                     /locus_tag="SFZ04_001035"
     CDS             complement(10546..10944)
                     /locus_tag="SFZ04_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8065321.1"
                     /translation="MKDALSGFSNSLIWFIVISIIVARGVIKTGLGEHLAYHFISILG
                     KKTLGIAYSIAFCETILAPVTPSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTY
                     LSLVNYQEPILFHQLCLLQLQLQILWWLIL"
     gene            complement(11105..11240)
                     /locus_tag="SFZ04_001036"
                     /pseudo
     CDS             complement(11105..11240)
                     /locus_tag="SFZ04_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
     gene            complement(11477..11574)
                     /gene="ffs"
                     /locus_tag="SFZ04_001037"
     ncRNA           complement(11477..11574)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="SFZ04_001037"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            11754..12479
                     /locus_tag="SFZ04_001038"
     CDS             11754..12479
                     /locus_tag="SFZ04_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002916395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8065322.1"
                     /translation="MEVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSNDI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGDR"
     gene            12476..>12798
                     /locus_tag="SFZ04_001039"
     CDS             12476..>12798
                     /locus_tag="SFZ04_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8065323.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLT"
BASE COUNT         4883 a         1843 c         2098 g         3974 t
ORIGIN      
        1 aagcaatttg aaaaacaaat caacaagctt aatgataaaa tagatcttct tgcagatatg
       61 atgtgggacg ataaagctga agctagaaaa aatcttatga tacctcctga atttgcaagt
      121 atttataaac aagccaaaga aagtggaatg cttgaaaatc atctagaagc gattatgaaa
      181 gcaactatag aaaatatgcc agctgctatg aaaaccaaca aagatgcggt tcaaagatat
      241 tttcactcac ttttaagaaa tatcttgcct tgtcgtgttg aaagcgatat aaaaaaacaa
      301 aaaatcatga tgctagtagg cccaacagga gtcggaaaaa caacaacctt agctaagtta
      361 gcttttcgct atgcttatgg agataagcgt tataaaacag gtattattac gcttgatact
      421 tatagaatcg gtgcagttga gcaacttttt cagtatgcaa aaatgatgaa acttcctatt
      481 attgatagca tagaaccaaa ggatttagat gaagcgataa aaagcttaaa taattgcgaa
      541 gtaattttag ttgatactat aggaaattca caatacgatc aaagcaaact tgctaaaact
      601 aaagaatttt taatgcactc aaatgcagaa attgatgtaa atttagtggt ttctgcaaac
      661 accaaacatg aagatttaat ggaaatttat aaaaattttt cattcttaaa tattgatact
      721 ttgattatta ctaaatttga tgaaacaaag gtttttggaa atatcttctc tcttgtttat
      781 gaaacaaata ttcctctaag ctttttctct ataggacaag aagtgccaga tgatttagaa
      841 gtagccaata gtgattttct agttcattgt attttagaag ggtttaacaa aggaaaaaat
      901 aatgaataac caagcaaata aacttcgcaa tctcatgagt caaaatggaa ccaaaaaatc
      961 ccaaaacact cattttatag ctattacaag tggaaaaggt ggcgttggaa aaagtacgat
     1021 tagcgcgaat ctagccaatg ttttagcaaa taatggctat aaagttgggc tttttgatgc
     1081 tgatattggc ttggcaaatt tggatgtcat tttaaatgta cgcatacaaa aaaatctctt
     1141 gcatgtttta cgcggagaat gctccttgga agacatttta atagaagtta agccaaattt
     1201 atggctcatc ccaggcgaaa gtggagatga gattttaaaa tataatgata aaaatattta
     1261 cgagagattt ttaaatcaag caagtatttt agatgaactt gattttctta ttatcgacac
     1321 aggcgcgggt attggtggaa atattttaaa ttttttagaa atggctgatg aagttatagt
     1381 agtaactgtt cctgatcctg cagcaatcac tgatgcgtat gcaaccataa aaacaacttc
     1441 taagacaaaa gaaaatttac taatgctctt taatgttgta aaaaatgaaa atgaagcttt
     1501 aaaagttttt gaaaatatta aaaaagttgc agatgcaaac attaaaaatc ctttaaattt
     1561 agaattctta ggtcatttaa gcgcttctaa agatgtaagt ggtagtatta aaaaaagaac
     1621 tttatttagc gatgaaaaca cagcctcaag tgatgagatt aaagccctag cttccaagct
     1681 tttatataga ttggaacgga aagtgcttga taatgtttca aatcgtagtt tttcaagttt
     1741 ttttagaaaa attattgaaa gattttagca ataaagagaa gagattatga ggccagaaaa
     1801 ttacgtagca tttttcactg tttgtggatt ttttatagga cttgcattta gcattattag
     1861 tatagatgaa gcctttgata tactgatttt tacttgtttt attactttta tgttttatgt
     1921 ttttgttcat attgctatta tgaattttat agatgtaaag aaaattagtg gcagaatctt
     1981 taataaacac gattatgaaa aaactagcaa taatattatc aacgatttag ttattcgtga
     2041 aaagaaaatg gatataattt tagaaaagct caatgaagaa agagaagagc taaagaaaaa
     2101 tgaattcaaa gaaagacgaa gaaatgctaa aagagccgcc taaagcttat gcacaaatgc
     2161 taaagaaaga gcaagatgag cttgtgcttt cttacatgcc agctctgcgt gctatggctt
     2221 ttagactaaa agaacgcttg ccttcaagta tagatgttaa tgatcttatt agcataggcg
     2281 ttgaagaaat gataaagctt tcacgccgtt acgataaaga acaaaatgat aacttctggg
     2341 gttttgcaag aaaaagagtt aatggctcta tgcttgatta tcttagaagt cttgatgtaa
     2401 tgagtcgaaa taatcgtaaa attattaaag atattgatgc aatcatggat gaatattttt
     2461 tagaacatga atgcgaacct gatgatgagt atctagccaa aaaacttgat ttagatgtag
     2521 aaaaaatcaa agaagtaaga acagctcatg ctattagcta taccctgccc attgatgagc
     2581 aaatcgaact ttataatgaa gacaatactt tagaaaaaat tgaaaaagaa gaacttttag
     2641 aaaaaattca cgaagtgcta gatgatctta aagagcgcga tcagttaatt attcagcttt
     2701 attattatga agaattaagc ctaaaagaaa tcagtgaaat tttacaaatc agtgaaagca
     2761 gaatttcaca aattcacaaa aaacttctta aaaaacttag agaaaggcta gtgtaatggc
     2821 tgagatactc tcccaagaag aaattgatgc tctacttgaa gttgtcgatg ataacaccga
     2881 cacacccata gcctcaaatt caaaagatga aaaagatgaa agaaatatcg ttgtatatga
     2941 ttttaagcgt cccaacagag tttcaaaaga acaacttagg acgattaaag gcatacatga
     3001 taaattagca agaaatttag cctctcaaat ttcatcgatg atgagaagta ttgttgaaac
     3061 taaacttcat tcagtcgatc agatgactta tggagagttt ttaatgtctt tgccaagccc
     3121 aacaagtttt aatgtttttt ctatcaaacc tttagatgga aactgtgttt tagaaatcaa
     3181 tccaagcata gcttttccta tgatagacag gcttttaggt ggtcaaggcg atagctatga
     3241 agcttcgcgt gagcttacgg atattgagct taatttactt gattctattt tgcgtatcat
     3301 tatgcaaaga cttaaagaaa gctgggctac cgtaactgaa atttatccta gtatagaagc
     3361 taaagaatca agtccaaatg ttgtgcaaat cgtatctcaa aatgagattg ttatcatggt
     3421 agtaatggaa atcatcatag gaaattcaag cggaatggta aatatctgct atcctgtagt
     3481 acatttagaa agtatattaa gccgtttagc aaaccgtgat attatgatgg gtgaaacctc
     3541 agccaaaaaa tcacgtaaca aagagcttaa aactttaatc ggtcgtgctg aagtggtata
     3601 tgaggcaatt ttaggaaaaa ccttaattaa tgttcatgaa tttttagaac ttaaacaagg
     3661 cgatatttta aggcttgata gagaagcaga cgataaagct atagtaagta tcgataaaaa
     3721 agatgttttc ttagcacaaa ttggattgca tcgttttaga aaatctatta aaattttaga
     3781 acttatacgc acagataaag atgaaatcaa agaaattttg gaaaaatacg aagaagagcg
     3841 taaagctaaa gccagtgttt atgatgagcc tgaagaggag gatgaagaaa tatgatcaat
     3901 gattttttaa aaatgtttac aaatgaatgc atcagcacca ttgaaggttt aacaggaaaa
     3961 agtgctgaat ttagcgaata taaagaattt gatgtcaata caagcgatac tttaaaagca
     4021 cctttagtgt atgctatatt taatatagca aatggtggaa aaataggaat tttagctggt
     4081 gctgttttaa tgagtgctat tggtgaatgg atgatgggtg aagaagagat caccaaaaac
     4141 gataaactag gtcctgatga aatggatgca gctaaagaag ccatccaaaa tatcatttca
     4201 gcattttcta caaccttagg agcccaaaaa gacattccaa aaatggattt tagcatagaa
     4261 tcttgtgaat ttgtgcctga aagcgtagat tttaaagatt ttaaaaaatt atttttatat
     4321 gatgtaaaaa taggcgattt agaagaacaa gtttctttag ccatggatca aacactccat
     4381 aacatcctaa gcgggaaacc tgctgaaaca ggaaatacaa gcactgattc taatcacaat
     4441 actgaagaaa aagcgataat gcttagcgaa gagcttaaaa atatcaatct tatcatggat
     4501 gtgcgtttgc ctgttcgtgt gcgtataggc aataaaaaaa tgcttttaaa agatgtttta
     4561 actatggata taggttcagt tgtggagctt aatcaacttg caaacgatcc gcttgaaatt
     4621 ttaattgggg ataaaagaat tgcttatggc gaggtagtaa ttgtcgatgg taacttcggc
     4681 gttcaaatta cagaaattgg ttctaaaaaa gaaagattag aacaactaag ataaaaagtt
     4741 ttagcctaca aattaagaat aataaatata aacgaattaa aactaaaaca aactaaaagg
     4801 gctgaaatca aaatgtaaag attttggagt atttaactta aaaggtttta gctctttttt
     4861 aggagcaaca attaaagcat aaccaccttt attatatcta tcccaaatac taaaaaattg
     4921 acttttagaa cttatatatt ctccatgact tggatcaagc acttgtaaat aattaccttt
     4981 atgattgata attataacaa aatgtggaaa gcgtggatca tcttcaattt ttacaagcat
     5041 tggaatattt acaagtttat ccaagttttc tctattgatt tgatatgaat tgctttcata
     5101 gcctagtttt ttaactgcat cgcttaaatc tgcaaagctt accatatccg tataaagttc
     5161 ttgtccgctc ataatcttta aaagttcaag ttcatcaaac tttttttgat catcaagtat
     5221 attaagtaaa gttgctaaag atgaagcacc acaagattgc tcataagttt gtcttattac
     5281 tctttcgttt ttaatttctt gataagactt aactacccat tcggcttttg tactcaaagt
     5341 aagaatgggt aaaaataata aaatttttag aattttttcc ataagcttat cccaaatatg
     5401 ctatcaggag aagcagagct tcctccaaaa ctagcattaa cagaaactgc ggtatctgaa
     5461 ttaatgctat aagtagaacc taaacttaaa gttggaatag aacgcacttc agaattttga
     5521 tagccattga ttttttgttt catttgaaat ctttgctctg ctcctaaatc taaagtaatt
     5581 ttaggactta gaataataga taaatcccca cccacataaa tactatttcc atactctatt
     5641 ttaagggttt taaattttct tgattgatta taaccaaacc ctgtataaat actataaact
     5701 acaggatcgc tatatcccct taaactagct tgtaagcttt gtgattttag ataaaagttt
     5761 ttggtttgat tgattgcttt ttctctttga acaactgcag tttgaaaggt aatttgtgga
     5821 attaaatctg caatactatc gcctgtataa ataaaaccta gccatagatt atcaaatcct
     5881 atgcgatctt tatgggaata tgcatttgtg aaaaaatttg tatattcttg tcttgcataa
     5941 cttccgcccc ctgaaataag tatgtcaaac ttaggtgtta gggtataaat gaaagtttga
     6001 gttaaaaaca cctgctttgt atcattccaa attgtaggat ctccgcctat tgttatatta
     6061 ggataaagag aatacgagtt tgcatttcct gtgctaagta aagaaaagct tgtaatgctt
     6121 cttaagccta tttgcttttt aaataaactg tctatattta gctcatcact agcaaaaaca
     6181 caattaacta aaaccataaa tgttaagaaa atttttttca ttgtcaatcc ttacatttta
     6241 aataatcagc tcaagttaat tttaaaattt aatccttgat attgaaaagt ttattattct
     6301 aagataaaat attttaaaat ctttaaatat ttttacttgc ttaatataat ttaagataaa
     6361 aatgaaaatt tgttacaaaa gcaaacaaac cgagaataaa atttttaagt atttaaagaa
     6421 aattcactta actttcaaag caagattaaa cttttgctag aataagtcga tagtagtttt
     6481 aaagaactta caaaaagaat ttatgaaagg attttcaatg aaaaagattt ttgctttatt
     6541 agctttaact tctttactga ctagttctgt tttgctgagg attttttagc taaactcaca
     6601 aaaggtgcct taagcgatac aagcccgggt gtcaaagaac tcagccttga agagatgaaa
     6661 gaagtgaagg gtgggtatat aacctattta aaacgactta gtgataatga agttatagcc
     6721 tttgccaaac ctgattggaa tttggaatta actttatttc aagatagtaa cggagatcaa
     6781 tattattgga atagagaagg acttgttcga tttggtggaa tgtgcggtat agaaactaca
     6841 aattgtttgg ttaatggtaa gcattcctat atcaatcaaa aaagactttg ggaaactatg
     6901 agtatagtgg gcgatgaccc ttatcgtaac tttcttggat atactgtgaa aagaaatatt
     6961 ggtatttcta atttagggaa aagatttgtg tatttttctt atggagtggc tgtaatcaac
     7021 gaacaatcag gttcttggta tagagtaaaa tcaagtcctg tctttgaata attacagagt
     7081 agttaaggaa atcagttcaa actataaaga ctttttagaa agatatcttg gtgggtattc
     7141 tatcaagtaa agaggaaaaa ctaatgataa atagtctaaa ctcaaattta aactatgatt
     7201 ataacacttc aaattttaaa caagataaaa atattgattt taaaatcaac aaacacggag
     7261 tagccgttat aacaggagaa ggtgctttgc cttatcgtgg aaaaaaattt gagtataatc
     7321 ctaaaatatt cggacttgat gaaagtatta gcaaaaaaga tatgcaagaa tttaacaact
     7381 ttatgaagtc aaatgcttta aaagacccca ataaaataga aaaatcccct ttaaaagatt
     7441 ttaatcctgc ttatacaaaa tgggacccaa ctacggagaa aatgatgtta ggtttttttg
     7501 tttcttattc taagatgttt catttgggct acgacatcat caaaaaagcc gatgaatttt
     7561 ataaagaatt tgacgcactt ataagtaaag atttaagctt aaatgagttt aaaactaaat
     7621 acatagattt taagcaaaga tacgatgaat ttgtgaaaga atacgaaatg gctatgggtg
     7681 ataaaatgtt gctttctagt gatgatgaaa ttatcactca acaaagtgaa aaacccttca
     7741 aagccattca aggcgaaagt aaaaacaaag aaacttacaa agatgatagc acaagaaacg
     7801 aacttgtaaa aaaactatta gaaggtaaat ttagcactag taaagaatta gaacttcttt
     7861 ttggtatgaa atttagtgat gatgatgcag gagaatttaa taaaatcctt tctttaaatt
     7921 ctacaccaaa aagtatagat attaaagctt aaggatttaa aagtctttaa attcctaatc
     7981 ttaataaaat aaacctatta aaacttatat aataaagaac ttattataaa tttttagcta
     8041 gaatggaatt tattttaact aaaggttgaa aaatgaatga aaaaataagc caagatttag
     8101 aaaaatttgc taacatacca aacctaaaaa atgccgtaac tttttttggt tcagcaagac
     8161 ttaaagaaga taatttttat tatcagcagg ctaaaatttt ggcacaaaaa tgtgctcaaa
     8221 atggtttttg tgtgataagt ggtggaggtg gtggtattat gcgtgcagcc aacgaaggtg
     8281 ctttttcaca aaaaaataat acaaattcaa tgagttctgt agggtttaat atatttttac
     8341 ctcacgagca aaaacttaat gattttgtag aatataatat tacttttgag agcttagcca
     8401 tacgcaaaat ggctcttatt gaaaagagtc tagcttttgt gatcttccca ggcggctttg
     8461 gaacacttga tgaattgtgt gaaattctta cattaaaaca attagaattt aaaaaagatg
     8521 ttcctattat tttgtttggg agtgaatttt ggcgaggttt tgatgagttc gtcagaaatt
     8581 ctttactcaa acttgaagtg atttctaaag gagatgagtt aaagtataaa atcactgacg
     8641 acttggattt tataattaat actttaaagg aaatttaatg aaaattctag tcgctatgag
     8701 cggtggagtt gatagtacag tcactgctta taaacttaaa aatttaggtc atgaagttat
     8761 aggttgttat atgaaacttc atggcaaacc aaattatcac gaagaaaata tcaaaaaagt
     8821 agaaaaagtt gcaaactttt tgcaaattcc ttatcatatt ttagacttac aagaagattt
     8881 taaaaacaaa gtttacatgc cttttgtgga tacttataaa gagggtaaaa caccaaatcc
     8941 ttgcgcttta tgtaaccgtt ttatcaaact tggaaaactt ttagaatttg ctaaaagttt
     9001 aggttgtgaa aaacttgcca cagggcatta tgcaagactt gaaaacaact taataaaaac
     9061 cgcagtagat gaaagcaagg atcaaagcta ttttttggcc agtgcagata aagaagcttt
     9121 aaaatatctt atttttccgc taggcgaaat gaaaaaagaa gatgtgaaaa aatttgcttc
     9181 cactatagag gttttaaaat cttttgccac ccaaaaggaa agttctgaaa tttgctttgt
     9241 tgaagatact tatgtgcaag ttttagatca gtttatggat acaaaaattc ctggagaagt
     9301 attagatagt agcggaaaag tagtaggcaa acatgagggc tatatgcact ataccatagg
     9361 caaaagaaga ggctttgaag tgcgtggagc gcatgagccg cattttgttt taaaaatcaa
     9421 tcctaagcaa aaccaaatca tcgtaggaac caaagaagaa cttaaaatca gtgaatttaa
     9481 cctaaaaaat atcaatcttt ttatagacgc taaagagctt gattgcgaag taaaaatccg
     9541 ctatcgttca aaatccacac cttgcaaggt agaaatttat gaagataaaa gtgcaaaaat
     9601 catcctaaaa gatcctgttt atgggcttgc tagcggacaa atggcagtct tttatgatca
     9661 tgataaagtc atagcaagtg gttttataga ataatttcta ggaattaatt cctagaaatt
     9721 attaataaaa tcctaaaatt ttccaccaaa aaagcccaac agctatcatc accactatat
     9781 caactatgga aatcacaaaa cctatactcc accatttttt aagagttaca cagcctgttc
     9841 caaaaataac agaagccgtt cctattgcat agtgagttaa tgccatcata acattacctg
     9901 aagctatcat aataaaagca taaaaaagtg gtggtgctcc taaggcaagc tgcactataa
     9961 aaaacaaaaa acattgctga tatatgagct gtaatggaag caaagaaata gtgtgtatat
    10021 aaaaaaagca aggcttaaaa atatcataat agaaatttcc ccaagtccca tagcagaagc
    10081 aaattcacct taagcttcag ctaaaaactg tgtaacgcca agtttgccaa ataaagttgc
    10141 catcattaca agagctgaaa accatactaa agtattccaa gcagcttttt cagccaaaac
    10201 ttccccaaaa gttaaaactc cactaatcaa caccaaagac aacccaagca aagccacact
    10261 agtcgcatca agagaaattc caaaaaaaca agcccaaagc tccagcccat aaaagtaaaa
    10321 gcgagacaaa aacactgagc atgatttttt cactattttt catttttaca agttctttta
    10381 atttatcttt agcaaaagta gaagcattag gcgtggattt aatttctagc ggagagagaa
    10441 aataaagcat caaaggcatc aaaagcatag cagctatacc aggtaaaaac atccctaaag
    10501 cctattaccc ccaagttaaa tacacttcta aatttgtagc ttgtgctata agatcaacca
    10561 ccaaaggatt tggagctgta gctgtaataa acatagctga tgaaatagga ttggctcttg
    10621 ataatttacc aaagaaagat aagtgcctat tttattttgt gttccatctt caggagtgga
    10681 tttaaaactt cttgcaataa cttgaactat aggatttatg atagcccctg ctcttgcagt
    10741 atttgaagga gtaactggag ctaaaatagt ttcacaaaaa gctatagaat aagcaatacc
    10801 taaggttttt ttaccaagaa tactgataaa atgataagcc aaatgctctc caagtcctgt
    10861 tttaataact ccacgagcca caataataga aatcactata aaccaaataa gagaatttga
    10921 aaaaccactt aaagcatctt ttatgcccgt tttagatttt aaatttgata tagcagtatt
    10981 taccttttca tcttatgctc ttttgatata aaaaatcaag tgctgaagta tttaaaggaa
    11041 attttagtct catcaataag ttgttgcgta gaagttttcg aagtagcttt ggtgtaaatt
    11101 ttacttagat tttcaattgg gtagtggtaa tacccactaa gagctactat ggcaatagct
    11161 ataaaaggca ttacttgtaa aatcactgcc ataatcacag caataaaaag cccaagaaaa
    11221 tgccaagaat tatcttccaa acctacagga gtaggtacaa gccaaaacac agctgcaatt
    11281 aaaatacaca gcaccaacaa gggaattttc tttctatcca ttgtttatcc tttgatattg
    11341 gtaatgtaat ttacaatgct taaattctag ttaactaata ttttaataaa tcttaaaatt
    11401 ataattttta aataaatttt taatttataa aaaagctagc ctaattgaaa aatgggaatt
    11461 ttaaaatgaa taaaaccctt ccccagataa ctgcggcaca cactaaaatc aagtgctctg
    11521 ctgtgttccc accctgaagc ggtgcttaaa aatagcattg cacaggtcta agaaaaggct
    11581 taaaaattat atcataatat acttaaaaag ccttgagttg ttaagattca atatataaat
    11641 ttgcaatcaa tccattgttt ttataagaat tttaaaaatt catttgtcaa attattattt
    11701 tattttcaaa aaatacgata taaaaataat tattacatcc aaaaaggaaa aatatggaag
    11761 ttaaatggag tagagatttt agcattaaaa atatgcaatt agacaaacaa cacgaactaa
    11821 tttttgaaat taccaatctt gcaaatgatt tagctctaaa cattcaagat aataatacac
    11881 aacacaaaaa tgatttaaaa caaattcttg taaagctatt tcaatacatc aaaattcatt
    11941 ttaaagatga agaaaaattt atggaaagca ttgattttcc tttgattgaa gaacataaaa
    12001 aatctcatca aatattagta gaaaaaacta aagagctttt agaacactca aatgatattg
    12061 taaaaatgtc tcaagaactt tccatattaa ccaaagattg gattttagat cattttgcta
    12121 atgaagattt atggatagct aattttacaa aaaaaaccct acaccttcaa gaaatccatt
    12181 ataccttaga acaatacata aaactaaaat caatcaaaca agacctaaga gctgaaaaaa
    12241 ctcatgatta tatttgcaat tgttctttgc gtatccatgc agttccacag actatacatc
    12301 aagagcttgt tagcaaagaa aataccttaa agtgcgaaaa atgtgggcaa attttagttc
    12361 atttggatta ttttgatttg aatcaaaatt tcgaaaaatt caatgctatt tttgaagatg
    12421 cactacaaaa tcaccatttc acgactcaaa aaaatgatat gggggggggg gatagatgaa
    12481 ttttcaagta aaaaccttag aaactttcaa tccttttgaa agtttaaatc atgaacaagc
    12541 aaacacagaa caaattcttg attttagagt tatagatttt aaacttctgt gttctagtgt
    12601 aaaaccagca aaaacaaaaa cttatgaaag aaaggatttt gacttatttt atgcagatga
    12661 tttttttgta aaaaactaca ataccatagt gcaaaaattt cttatagaaa tttacccaaa
    12721 aacccaaagt tttcctttta cagtcaaact tagatccaac tccaacctaa cccatctaaa
    12781 agccagtatc aaccttac
//
LOCUS       DARGBD010000045        12653 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.045, whole genome shotgun sequence.
ACCESSION   DARGBD010000045 DARGBD010000000
VERSION     DARGBD010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12653
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.045"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            11..1706
                     /gene="kdpA"
                     /locus_tag="SFZ04_001040"
                     /pseudo
     CDS             11..1706
                     /gene="kdpA"
                     /locus_tag="SFZ04_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            1716..3591
                     /gene="kdpB"
                     /locus_tag="SFZ04_001041"
                     /pseudo
     CDS             1716..3591
                     /gene="kdpB"
                     /locus_tag="SFZ04_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
     gene            3593..4201
                     /gene="kdpC"
                     /locus_tag="SFZ04_001042"
     CDS             3593..4201
                     /gene="kdpC"
                     /locus_tag="SFZ04_001042"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HEG8065324.1"
                     /translation="MLRTLLSFFVVMLILCTLIYPFALNTVAKFIFPYQSSGSLVGKE
                     GRPTLDISKAVGSKLLGQDFNKPYFLHSRASVSNYNTSDTNESSVSSGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIAKAMKKE"
     gene            4204..6133
                     /locus_tag="SFZ04_001043"
                     /pseudo
     CDS             4204..6133
                     /locus_tag="SFZ04_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
     gene            complement(6128..8101)
                     /gene="uvrB"
                     /locus_tag="SFZ04_001044"
     CDS             complement(6128..8101)
                     /gene="uvrB"
                     /locus_tag="SFZ04_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEG8065325.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNILENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDIPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            8255..8485
                     /locus_tag="SFZ04_001045"
     CDS             8255..8485
                     /locus_tag="SFZ04_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065326.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            8475..8717
                     /locus_tag="SFZ04_001046"
     CDS             8475..8717
                     /locus_tag="SFZ04_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065327.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            8714..9151
                     /locus_tag="SFZ04_001047"
     CDS             8714..9151
                     /locus_tag="SFZ04_001047"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG8065328.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            9133..10986
                     /locus_tag="SFZ04_001048"
     CDS             9133..10986
                     /locus_tag="SFZ04_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEG8065329.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKSKKN
                     LKAIVLKECQKPDFKTIEIKEITKYFLTPLQLELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLECFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNILKCHYCNYTSLIEQNCPSCKGEMLEARKIG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKNFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(10996..11202)
                     /locus_tag="SFZ04_001049"
                     /pseudo
     CDS             complement(10996..11202)
                     /locus_tag="SFZ04_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
     gene            complement(11302..11817)
                     /locus_tag="SFZ04_001050"
     CDS             complement(11302..11817)
                     /locus_tag="SFZ04_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065330.1"
                     /translation="MQKTINENISTGNAIIQASNIEPKFKIDPIQFKECVFYEIWTIK
                     NPQNTSYTLSAERCQTAFLNNKELIKYADPSFVMGNFIKDNQENILGIKAVKEELSKP
                     SYVTDVKSYKFISDKYKILENGNYIYILQNFKAKSEILGEYTQNAHIIFNNKGNVIKI
                     ELNQNKEFGSY"
     gene            complement(11981..12604)
                     /locus_tag="SFZ04_001051"
     CDS             complement(11981..12604)
                     /locus_tag="SFZ04_001051"
                     /inference="COORDINATES: protein motif:HMM:NF012920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HEG8065331.1"
                     /translation="MEEKEQLLQEMIEFYSVKDKFELAEYLGLSRESAHNWPKRISKK
                     QILIYEKDKKIKISSKNTEKIISDDEDIVLVPFYKDNSVSAGFGSKNYEGLVQHIPFN
                     KQDLRLMFNIQGFLKIGIIPVIGDSMAPTIKEGEMIVFQDDGSMIEGGIYVIEYQSEV
                     FVKRLRKRPLSLISDNKDYPPIVMNEDEEIKIIGRVVGTYDLNYRRL"
BASE COUNT         4252 a         1710 c         2115 g         4576 t
ORIGIN      
        1 aaggaaaaat attctagaaa ttttaataac actgattata gcttttatat tggctttaat
       61 ttttggaaat tatctttata aaattgcaag ctgtaaaaaa aactattttt gattttattt
      121 ttaatccaat tgataactta atttataaaa tttgtgcaat tgatagaaaa aatatgactt
      181 ggcaaaaatt attctttgca tttaattgct tttaatgcct tagtggctat tttttctttc
      241 gtgatttttt atttacaaga taaacttttt taaatcctaa ttcgataaat tctatgaaag
      301 gggatttgaa tttaaatact gtaattagtt ttattacaaa tacaaacctt cagcattgta
      361 gtggagagag tgctttaagt ttgctttcgc aaaatacagg cattttactt gctatgtttg
      421 tttcaagtgc gagtggatat tctgcttgta tggctttttg tcgtgcttta tgtagtatgc
      481 aaatgggaaa tttttatgaa gattttacgc gtattattac gcgtttgatg ttgcctttaa
      541 gttttatttt ggctgtaatt tttatctctg aaggcgtggt gtaaaattat cacgcaaatt
      601 ttagcgtgct tactttagaa aataaatttc aaagcattgc cacaggtcct gttgcagctc
      661 ttgagtctat aaaacattta gggacaaatg gggggggggt ggtttttttg gtgctaattc
      721 aagcatgcct tttgaaaatc ctgctttact tacaaatttt ttgcaaattt tatccatgat
      781 gcttattcct agtgcctgtg ttgtagcttt tggattgatg gtttatcata gaaaagaaag
      841 acaaggtttt gctcttatgg gaaaagaagg ggagttattt ttggtgcaat ggggattatt
      901 tttatcattt ctttgctttt aatttatttt agcgaaaaaa tgtcaaatcc aaatttggat
      961 tctttgggtt taaatgcaaa tttgggaaat ttggaaggta aagaaataag atttggcaca
     1021 gatggttcga gtttatttag tgctgtaact actgctttta ctacaggaag cgtcaataat
     1081 atgcacgata gtttaaatcc attaagtatc agtgctactt tgctaaatat gatgctaaat
     1141 gtagctttcg gtggcgaagg agtagggctt atgaatatga ttatttatgt gcttttaacc
     1201 gtgtttattt gtgcattaat gataggtaga actccagaat tcttgggtaa aaaaatagaa
     1261 agcgcacaaa tgaagcttat agctttggta attcttatcc atcctttatt aatccttgtt
     1321 ttaagtgcat tagctcttgt ttttgcaaaa gatagtataa gcaatcctag ctttcatggc
     1381 ttggctcaaa ttttgtatga atttagttct tcggcagcaa ataatggttc aggacttgaa
     1441 ggtttaaaag atgataattt attttggaat ttaagcacag cttttgctat gttttgtggg
     1501 cgttatttgg tttaatagct cagcttgcta tagctggatc gcttttggct aaaaatacac
     1561 aagaaaatac tgcaaattct ttaaaaacgg ataatttaac ttttatgttt gtgcttgttt
     1621 gtattatata tatttttgct gcacttactt tttttccagt gcttacttta tcaagcgttg
     1681 cagaatattt atctttatgg cattaaggag agtcaatgtc taaaaaacaa aataaactca
     1741 ttataaaaga aattttaaat aatgccataa aaggagcatt tttaaaattt gatccacgct
     1801 ttatggtaaa aaatcctgtt atgtttatgg tggaagttgg attgattctt actttgattt
     1861 taagtatttt tcctactttg tttaatggaa attctgatga aagaatttat aacatcttaa
     1921 tcacttttat tttatttgta accttgcttt ttgcaagttt tgcagaaagt attgcagaag
     1981 gaaggggtaa agcccaagca gctaccttaa gacaaagcaa aaaggattct aaagctagac
     2041 gcataaaaag tgatggcagt gaagaaatgc ttaattctag cgagttaaaa ataggtgata
     2101 tagttttagt taaagcaggt gaacttatac ctaatgatgg agaaattata gaaggtgctg
     2161 cgcgtcaaaa aactccaaat gaaattgctc ttaatactct tttaattgta cttagtttga
     2221 gttttttggt ggtggttgta agtttatatc cttttatgca atttttaggc gcgagtttgc
     2281 ctatttcatg gttagtagca ttgcttgtat gtcttattcc tacaactata ggggggcttt
     2341 tatcagctat aggaatagca ggtatggaca gggtaacgcg ttttaatgtg atcgcacttt
     2401 caggcaaggc tgttgaaagt tgtggtgatg ttgatactat gattttagat aaaacaggaa
     2461 cgattacttt tggaaaccgt ttggcaaatg aattttatga agttcaaggt ataagtaaag
     2521 aagaaatgat taaagcttgt gttttatcct ctttaaaaga tgaaactcca gaaggtaaaa
     2581 gcatagttgc attggctcaa aaaatgggtt atgaattaga aggtaatgat attaaagaat
     2641 ttatcgaatt tagcgctcaa aatagaatga gtggtgtgga tttgcaagat aatataaaaa
     2701 ttcgcaaagg tgcttttgat gctataagag cttatataag cgaaatgaat ggaaaaattc
     2761 ctagcgattt agaaactaag gtaatggaaa tttcaaatct tggtggtact cctttggtag
     2821 tgtgtaaaaa tgaaaaaatt ttaggagtga tttatctaaa ggatacagta aaacacagta
     2881 aaaccaggac ttaaagagcg ctttgatgag cttagaaaaa taggcataaa aactttaatg
     2941 tgtaccggag ataatccttt aacagcagct actatagcca aagaagcagg gcttgatcga
     3001 tttatagcag aatgcaagcc tgaagataaa atagaagcta ttaaaaaaga acaagcccaa
     3061 ggtaagatag tagccatgac aggagatgga accaatgatg ctccagctct tgcacaagct
     3121 gatgtaggta tagctatgaa ctcaggaact caagcagcta aagaagcagc caatatgata
     3181 gatcttgatt ctaatcctac taaaatttta gaagtagttg aaataggaaa aggtttgctt
     3241 attactagag gcagtcttac aacttttagt atggcaaatg atattgctaa gtattttgct
     3301 attttacctg ctatgtttag tgtggtttta cctcaaatgc aaattttaaa tattatgcat
     3361 ttagctaccc cgcaaagcgc tattttatca gcacttattt ttaatgctat tattatactt
     3421 ttgctcatac ctattgctat gcgtggagtt aaatttaagc ctatgaaaag tgagcatttg
     3481 cttttaagaa atttgagtat ttatggttta ggtggtatga tagcaccttt tatagggata
     3541 aaaataattg atattcctac agcttggata cttagaattt taggagtgtg atatgcttag
     3601 aactttgctt agtttttttg tggtaatgct aatattgtgt actcttattt atccttttgc
     3661 tttaaataca gttgcaaaat ttatttttcc ttatcaatca agtggaagtt tagtgggtaa
     3721 agaaggtcgt ccgactttgg atataagcaa agcggtaggt tcaaaacttt tgggtcaaga
     3781 ttttaataag ccttattttc tacattcaag agcatctgta tcaaattaca atacaagtga
     3841 tacaaatgaa agcagtgtaa gttcaggtgg atttaattat gctatgtcaa atcctgcttt
     3901 aaaagagcgt gtgcaaaaag atttgcaaaa atttttagat gaaaatccgc aaattacaaa
     3961 agaacaaatt cctttggatt tattaagtgc ttcaggatca ggtcttgatc ctcatatcag
     4021 tcttcaagca gccctagtac aaattcctag gataagtcaa tcttcaaaaa tcaccaaaga
     4081 agaactagaa aaaatcattc aagaaaatac cgagtctaaa tttttaggga tttttgggga
     4141 agaaaaggtt aatgttttag ctgttaatat agctattgct aaagccatga aaaaagaata
     4201 aacatgcaaa gacaaagtcc tgaacaaatt cttaaaaaac ttgaggttaa agctaaggaa
     4261 gaagaaaaaa acaaacttgc aaaattaaaa attttcttag gttatgctgc aggttctgga
     4321 aaaacttatg ctatgttaag tgaagccaga actttaaggg ataatggagt tgatgttgtt
     4381 ttaggctata tagagcctca cgatagacct gaaacaatgg ctttaacaca aggttttgaa
     4441 agtatagcta atcttgaaat tccttataaa aatatagtat taaaagaatt tgatttagac
     4501 gctaccctta agagaaagcc tgctttggtt ttagtagatg agcttgcaca ctaatgctaa
     4561 aggcttgcgt aatgaaaagc gttttcaaga tatagaagaa cttctaaaag cagggattga
     4621 tgtttatact actttaaata tacaacattt agaaagctta aatgatttag tcgctaatat
     4681 cagtaagata gaagttaaag agcgtattcc tgatcgtatt tttgatgagg ctgatcaggt
     4741 tgaacttgtt gatattgaac ctaataagct tttaaaaaga atgcaagatg gtaaaattta
     4801 taaggaaaaa caagctaaac tagcacttga aaatttcttt cgccaagaaa gacttatagc
     4861 tttgcgtgag attgccttaa gaagacttgc ttcaagagtg aatttaagag caagtgaaca
     4921 aaggcttatt aatgatgatt tagcttatca tactggagag catattttag tttgtattaa
     4981 tgcttcaaat gcaaaggtta ttcgtgcagc tgcaagactt gctttagctt ttcatgctaa
     5041 attgagtgcg ctttatatga aaaatcccaa tattaaagaa gaaaaagcct tagaagaaaa
     5101 tatagaacta gctaaaagtt ttgatgctga aatcattagc gtatatgatg atatagcaag
     5161 acaaattgca gagtattcaa gtcttagcaa tgtttctaaa attgttttag gtaaaaataa
     5221 agataaaaaa gtttaaagaa gagatttttg aagctgttgc taaaaaagca cccaatattg
     5281 atttatatat tgttaatgaa aatcaaattt ctactcctaa aatacgaagt aaaaaaagtt
     5341 ttgatttttt aggtttttta aaaatcacag gagttttgct tttagcaact tttatagctt
     5401 ttgtatttca taaatttaat actcagccaa gtaatatggt tatgattttt attttagcag
     5461 tttttgcttc ttcttttatt tctgataata aaattttcgc cttttattct tctttggtaa
     5521 gtgttttgat ttataatttt ttctttttta gaacctattt ttagtcttaa agttcatgat
     5581 agtggaaata ttattacttt tacaaccatg tttatagttg gatttttaac agctgttttt
     5641 actagaagat taaaattgca atctaaaaac tcactaaaag agcttataga acagctattt
     5701 tgcttgaaaa tagtgaaaat ttagcaagag tgaaaagcaa acaagagctt tgggaacaac
     5761 ttggaaatca agctttaaaa ttattaaatt tgcctattat tatttatcct ataaataaaa
     5821 acaatatttt atcgaaacct ttgttgtttt ttaacgatga taagcaaatg ttaaaaaatt
     5881 gttttagtgc tgatgagatt gctattgctc aatgggttgc aacaaataaa gaaagagcag
     5941 gtgtttgtac aaataccctg cctaatgcta atgctaatgc tatgtattta cctatagaag
     6001 atgggaaaaa actaaagggg ttataggtat agttttaaaa gaaaaacgtc ccttgcaaga
     6061 ctttcagtat gaaattttaa gtgctttact taatgaggca ggagttagaa caagggatat
     6121 atttttatta taaatccctt aatttattaa tctcatctct aatagcagca gctttttcaa
     6181 actcaagtgc tttagctgct tcaagcattt gttttcttaa ctctttgaca agtttagctc
     6241 tttcgctagc aggcattttt tctagttttt tacctttgcg ataaatttcg cctaaatcct
     6301 cttcattttt taaactctct tcaatatggc gtttaactga agttggcgtg atattgtatt
     6361 ttttattata agccatttga agtttgcggc gttcatttgt ggtatccata gcttcttgca
     6421 tggattttgt gatttttttg caaaaaagca aaaccttacc attgacattt ctagctgctc
     6481 ttcccatggt ttggattaaa cttgtagtgc ttcttaaaaa tccttcctta tctgcatcca
     6541 taatggcaat gagtgaaact tcaggtagat ctagtccttc tctaagtaag ttaatgccaa
     6601 ttagcatatc aaaagcaccg cttcttaaac ctcttatgat ttcattacgt tctatagcat
     6661 cgatgtctga gtgcatgtat ttgactttta taccaagctc taaataatac cttgtaagtt
     6721 cttcagcgag ttttttagtt agcacagtca ctaaaacacg ttcattcctt tgtatgactt
     6781 ttttagcctc atcaaataaa atttcaacct gattatcact atcttttaac tctattaaag
     6841 gatcaagcag tcccgtagga cgcatgattt gatgaaagat gttttcttta ctcagttcaa
     6901 gttctaaagg tgcaggtgtg gctgaaacaa aaagaaattg acaattttta tggataaatt
     6961 catcaaacat caaaggacgg ttatccaagg ctgaaggcaa acgaaaacca taatccacca
     7021 aggtttgttt tctgcttcta tctcctgcaa acatacctct aaattgtggt aaagatacat
     7081 ggctttcatc gactataaca agaaattttc tatctttaat cgcaaaataa tcaaaaagcg
     7141 tataaggaat atcaccttct ttaagccctg ttaaatgtct tgcataattt tcaacgcctt
     7201 tacacattcc tgtgcttgta agcatttcaa gatcaaattc aaccctttgt ttaaggcgtt
     7261 gatattctac gagtttattt tcatgttcaa aataagcaag gcgttcgtta agttctgctt
     7321 ttatgtcttt tatcgcttgt tttagccttg tttcacctac actaaactgg cttgtaggat
     7381 agagtatgaa gcgttttaaa tctttgcctt ttttattttc taaaatattg taatgataca
     7441 tagcatcaag ctcatcgcca aaaaattcaa gtcttactac ttcatcttca taataagctg
     7501 gataaatgtc tataatatct ccttgaactc taaaatctgc acgatcaaaa aaattatcat
     7561 ttcttttata acccatatct acaagttttt ttaaaagttc tttttgtgaa atttgcatac
     7621 ctagttcaaa gattaaaacc atgcctatgt attcatttgg attaccaagt ccataatttg
     7681 ccgaaacact agctatgcaa actacatctt cataacttaa aagagaagca gtagcactca
     7741 gtcttaaacg ctctaagtct tcattagtgg agctgtcttt ttctatgaaa acatcagtgc
     7801 gtggaatata ggcttcaggt tgataataat cataataaga tataaaatat tccacatgat
     7861 ttttagaaaa aaagccttta aattcgctat aaagttgtgc acaaaggctt ttgttgtgac
     7921 tcatgataag agtgggcata ttaagttctt taatgacatt tgccatggta aaggtttttc
     7981 cacttcctgt aacgcctagt aaggtttgat atttgttgcc tttttttata ctttttacta
     8041 taccttttat ggcttcttgt tgatcaggac taggtttaaa ttcgctggta agttctaaca
     8101 tttttctact ttatttttat ttttgaaaaa attttaaaag aaaatgcttt aattaaaaat
     8161 taattgacaa taaaaaccta aatttaaatt tttttctgct acaatatcaa ataatatttt
     8221 ccataaatta caaatttttt aagaaggcaa aaacatgttt gatgaaaaaa taatcaatac
     8281 tatgacagat aaagtaaatg aattaattga aaagtataac gaagtttgcg aagccaatga
     8341 ggctttaaga aatgagcttg taagcgttaa agcacaaaat gaagcaaaaa gtaatcaaat
     8401 tatgcgtttg gaagaagaac ttaaatctcg caatatagaa agcgaagata tttataagaa
     8461 aatagaggct gttcttggca gataatctaa aacaagtcat tgttaatgtt aatgcaaaag
     8521 atttcattgt taagtgcagt gaagaatttg caaatttttt agaagatgat atcgctttga
     8581 tttcaggggg tactaaaaaa atagaactta aacgctttgt agatgcgttt gttaaaaaaa
     8641 gttatgaaaa ttatattcta gaaagagaac ttaagaaact aataaaagca atcaatgaag
     8701 aactcccgac aaaatgaaca aagcttttac tctgcttgag cttgtttttg tgattttgat
     8761 tttgggaatt ttgtcaagct tatctttatc ttttatcaat actacaaaag atgaggttaa
     8821 aattttaaaa ttaaaaatgg actatgaaat gctaagctca gctcttgctt taatgcgtag
     8881 tcaaatgaga cttaaaaatt taaattttcc agaaatttta gataatgcgc aaaacaatca
     8941 agccaaagaa aaactctttt attgtttaaa tgattgtgat tattctttgc ttgatacacc
     9001 tatttattct gattttaaat cttggataaa aataggtaaa aatcactata gatttgcatt
     9061 aaatgctaaa gagatggttg aatttattta tgattctaaa gaaggtttgt taaaatgtat
     9121 aggaagttct agatgcaaag atctgatata agatattatg aacttgcaat ttgtggtttg
     9181 tatttggata atttaacttt tcatagtttt gatgaaatca aacctttaac acaagtatta
     9241 gtggatttaa aatctaaaaa aaatcttaaa gccatcgtac ttaaagaatg tcaaaaacct
     9301 gattttaaaa ctatagaaat taaagaaatt acaaagtatt ttctaactcc tttgcaactt
     9361 gaattggcaa attttattgt ttattattat gcttcaaaac ttggttttgt tttgggtttt
     9421 tttgaaacta gtcctaagta tgaatgtcaa aaaatgtttt ttaaagatac ccctaagcta
     9481 agcaatcaac aacaaaatgc cttaagtttt cttcaaaaag aaaataattc tttgcttttt
     9541 gctgatacag gtagtggtaa gactgaaatt tatatttctt taataaaaga gtgtttagaa
     9601 cagggtaagc aagctttact tttgatgcca gaaatcgcac ttactccaca aatgcaaaag
     9661 cgtttagaag tatattttaa ggataatttt ttcctgtggc attctaaaat ttcaaagaaa
     9721 aaaaagcaag aatatttaga gtgtttttgc aagggagaag tgcttttagt agcgggtgca
     9781 agatcggctt tgtttttacc ttttagaaat ttaggactta ttgtagtaga tgaagaacac
     9841 gataattctt ataaggcttc taaccagcct tttatcaatg caagagattt agcacttttt
     9901 ttgggtcaaa aaaataatat taaagtggtt ttaggttctg caaccccatc tttaacgagc
     9961 ttttataaac aaaaaagttt tagactaaaa ggaacttttt ttgagagtaa aaaacatttt
    10021 ttatatgatg aaaatgagct cggtataaca cctatgcttt taagcgaatt agaaaaaagt
    10081 ttaaaacatc aaaaacaagc tatagtgttt ttacctacaa gggctaattt taggcaaatc
    10141 atttgcaagg attgtggaga aacgataaaa tgtccttttt gttctattgc tatgagtatg
    10201 cataaaaaga aaaatatttt aaaatgtcat tattgtaatt atacttcttt aatagagcaa
    10261 aattgtccaa gttgcaaagg agaaatgtta gaagctagaa aaattgggac tgctgaactt
    10321 ttagagcttt tgcaaaatgc tttgccttta gcaaaaatag caaaatttga tagcgatgaa
    10381 atcacaagcg ttaaaaagct taatactatt ttaaaaaact ttaatgaaaa taagatcgat
    10441 atacttattg gcacttctat gcttgctaaa ggacatgatt atcatagtgt ggatttgagt
    10501 gtgattttag ggcttgatga atatttgttg cgtcctagtt ttagagcgag tgaagaaact
    10561 ttagctttag ctatgcaagt tgcaggcagg gcagggcgta aaggcgaagc aagagtactt
    10621 ttgcaaacaa aaaatagagc tttttttgaa aggtatatag agaattatga tgctttttta
    10681 aaagatgagt tagaaaatag aaaagatctt taccccccat ttaaacgcct tttaagagtt
    10741 cttatagaag ataaagatca aaaaagtgca caaaaacttt gtgaaaaatt tgcttctcaa
    10801 tttagaaata tcaaacaggt agaattggta ggctatggaa tttgtggagt tgaaatgctg
    10861 tatggaaaat atcgttttta tttgttgctt agaagtgaaa atcataaagc tttagtggca
    10921 attgaaaatt atattttgca atttaaaaat gcaagtgcgg atattgatcc tattgatttt
    10981 gtgtaagtga tatgattatt tatctttgta tattttttca aattctttat aatatttcca
    11041 agaatcaata atatgaggat gtgtttgttt taaatgattt agttcatttt caaaaatatt
    11101 aaaaaaagtg taaataagtg atttattttt tataaaataa tctattacat ctttttcttt
    11161 catcattttt gattctgttt catctatggt tattttaatt ttgtcggcgg aaaaataaaa
    11221 tgtcgcaaaa gaaaaataaa atgtcgtatt tttgcgacaa attatctttc tttcaacctt
    11281 aaacttaaat tgtaatttta atcaatatga gccaaattct ttattttggt ttaattcaat
    11341 ttttatcaca ttgcctttat tattaaaaat aatgtgggca ttttgagtgt attctcccaa
    11401 aatttcactt tttgctttga agttttgtaa aatataaata tagtttccat tctctaaaat
    11461 tttgtattta tcgctaataa atttatagct tttgacatct gttacatagg atggtttaga
    11521 taattcttct ttaactgctt taatgcccaa tatattttct tgattgtctt tgataaaatt
    11581 acccattaca aagcttggat ccgcatattt aattaactct ttattgttga gaaaggcggt
    11641 ttggcatctt tctgcactaa gcgtataaga agtattttga ggatttttta tagtccatat
    11701 ttcataaaac acgcattctt taaattgtat aggatcaatt ttaaattttg gttctatgtt
    11761 tgaagcttgt ataatagcgt ttcccgtact tatattttcg ttaatggttt tttgcatttt
    11821 ttcataaaac tttgctttat ctgaataagt tttattataa aaagctttat ggatatcatt
    11881 ttgaatatct agcacattag tgtttgtgtt atactcaccg ttttcgcaac ctgttagtag
    11941 taaaagtcct aatcctaaaa tatattttaa ttttttcatt tcacaacctc ctatagttta
    12001 aatcataagt acctaccact ctacctataa ttttaatttc ttcgtcttca ttcataacga
    12061 taggcggata gtctttatta tcgctaatta atgataaagg tcgctttctc agtctcttta
    12121 caaagacttc actttgatat tctatcacat aaatccctcc ctcaatcata gaaccatcat
    12181 cttgaaaaac tatcatctca ccctctttta tagtgggtgc catactatcc cctatcactg
    12241 ggataatgcc tatttttaaa aatccttgaa tgttaaacat aagtcttaaa tcttgtttgt
    12301 taaatggaat atgctgaact aagccttcgt aatttttaga accaaatcca gcagaaacag
    12361 aattgtcttt gtaaaatgga actaaaacaa tatcttcatc atccgatatg attttttcag
    12421 tatttttact tgaaatttta atttttttgt ctttttcgta aattaaaatt tgttttttgc
    12481 taattctttt aggccagttg tgtgcagatt ctcttgaaag acctaaatat tcagccaatt
    12541 caaatttatc tttaacgcta taaaactcta tcatttcttg gagtaattgt tctttttctt
    12601 ccattttaaa tcctaaaaca tatgtatatt tatgtaaaaa tacttgactt ttt
//
LOCUS       DARGBD010000046        12637 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.046, whole genome shotgun sequence.
ACCESSION   DARGBD010000046 DARGBD010000000
VERSION     DARGBD010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12637
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.046"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..742)
                     /locus_tag="SFZ04_001052"
     CDS             complement(<1..742)
                     /locus_tag="SFZ04_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEG8065332.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYKKLRDFLK"
     gene            complement(778..2772)
                     /locus_tag="SFZ04_001053"
     CDS             complement(778..2772)
                     /locus_tag="SFZ04_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEG8065333.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(2741..3541)
                     /gene="rsmA"
                     /locus_tag="SFZ04_001054"
     CDS             complement(2741..3541)
                     /gene="rsmA"
                     /locus_tag="SFZ04_001054"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEG8065334.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            3621..4157
                     /locus_tag="SFZ04_001055"
     CDS             3621..4157
                     /locus_tag="SFZ04_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEG8065335.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLSQLYFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            4181..5251
                     /gene="rlmN"
                     /locus_tag="SFZ04_001056"
     CDS             4181..5251
                     /gene="rlmN"
                     /locus_tag="SFZ04_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEG8065336.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     NLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            5248..5346
                     /locus_tag="SFZ04_001057"
     CDS             5248..5346
                     /locus_tag="SFZ04_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065337.1"
                     /translation="MTMLDIFEIIFITTVVIIGFGGIVFVVTKEKK"
     gene            complement(5360..5436)
                     /locus_tag="SFZ04_001058"
     tRNA            complement(5360..5436)
                     /locus_tag="SFZ04_001058"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5400..5402),aa:Met,seq:cat)
     gene            5571..5658
                     /locus_tag="SFZ04_001059"
     tRNA            5571..5658
                     /locus_tag="SFZ04_001059"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5605..5607,aa:Ser,seq:gga)
     gene            5705..5780
                     /locus_tag="SFZ04_001060"
     tRNA            5705..5780
                     /locus_tag="SFZ04_001060"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5738..5740,aa:Ala,seq:ggc)
     gene            5784..5859
                     /locus_tag="SFZ04_001061"
     tRNA            5784..5859
                     /locus_tag="SFZ04_001061"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5817..5819,aa:Val,seq:gac)
     gene            5887..6417
                     /locus_tag="SFZ04_001062"
     CDS             5887..6417
                     /locus_tag="SFZ04_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8065338.1"
                     /translation="MQNTIIQKAIHKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKVSLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(6397..6999)
                     /gene="leuD"
                     /locus_tag="SFZ04_001063"
     CDS             complement(6397..6999)
                     /gene="leuD"
                     /locus_tag="SFZ04_001063"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEG8065339.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(7001..8413)
                     /gene="leuC"
                     /locus_tag="SFZ04_001064"
     CDS             complement(7001..8413)
                     /gene="leuC"
                     /locus_tag="SFZ04_001064"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEG8065340.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIKNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(8400..9476)
                     /gene="leuB"
                     /locus_tag="SFZ04_001065"
     CDS             complement(8400..9476)
                     /gene="leuB"
                     /locus_tag="SFZ04_001065"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEG8065341.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENNNG"
     gene            complement(9463..11010)
                     /gene="leuA"
                     /locus_tag="SFZ04_001066"
     CDS             complement(9463..11010)
                     /gene="leuA"
                     /locus_tag="SFZ04_001066"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEG8065342.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGVATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENE
                     FVIEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPVLKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMWHENL"
     gene            11330..11959
                     /locus_tag="SFZ04_001067"
     CDS             11330..11959
                     /locus_tag="SFZ04_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065343.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(11995..12600)
                     /locus_tag="SFZ04_001068"
     CDS             complement(11995..12600)
                     /locus_tag="SFZ04_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEG8065344.1"
                     /translation="MFSNLALADENSGFFIGADAAWMHAQVKSELKHKNTKQNFNGDI
                     SGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGDFTTHKFLTGYDFT
                     PKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIGALYDLTPHNEIEL
                     GFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
BASE COUNT         4097 a         2267 c         1858 g         4415 t
ORIGIN      
        1 attttaaaaa atctcttaat tttttatatt cgccattttc taaataacga tgttttcccg
       61 ccttcaacat accaagatct aaagccccaa aagcaacacg cttaagatcc atgacttcaa
      121 gatcaaaatg tccaaaaaag cgtctaagct ctctattttt accttcattt ataaccactc
      181 taagcttagt atagcctcca cttgatccaa aaatttcaaa gtctataaaa ggagcaaaac
      241 tcatagaggt aattttagtt tttgcatgtg cgcctttttt ttcattttta atctcaagtc
      301 cattttgcat ggcttcgatg acttgtttgc tcaccgtgcc tttaacttta aggtagtatt
      361 ctctttctaa atcgctatgc attaaagcat cggcaatcac aggagaatct gtaagcaaaa
      421 gtaagccttc acttgcataa tccagcctac ctacgctaag ccaagtacta aattgtcttg
      481 gcaaggtatc atatatagtt tttcttccac gatcgtcttt tttactgaca atttcacctt
      541 tttgtttatg gtagattatc acgctaaatt gcgttctttt ttgtactctt ttacctttaa
      601 caaaaacttt atcatcaaat ttaacttcat cgcttaaaag ggcaattttg ttgtttattt
      661 ttactaagcc ttgtttgata agttcatcgg cttcacggcg tgaatagcgg gtgttatggg
      721 atataaattt attaattctc atttgatctt ccttaaaaag ggcgtttttg ccctttttta
      781 cattacaaaa atagttggaa ctatggttgg gtatttttta atctttctaa agatgtgttt
      841 tcttaaaact tggcggattt gattttctaa aaatcttgga tcattgagta cttcatcttt
      901 aacattgatg aaaaattgtc ctaaaacttc agccatatct ttgctaaaag catgatcgtg
      961 tttgtcagct actagcccat agctaaatac tcttggtttg ttgatcagtg tttttgtagc
     1021 tttgtcaatt tgtgcgataa taactactat accactatct gcaagttttt gacgatctat
     1081 aactacatca tcggcgattt gtttattgat ttgattatct acaaaaactt tacctgtttt
     1141 tacggttttt atgcgtttga catatttttg gcaaagttct acttgatcgc catcactcat
     1201 aagataaata tttctttcag ggataccgca cttcatcgct gtttctttgt gtttggtgat
     1261 gtgattgtat tctccatgaa ctggtaggaa aaatttaggc ttagtaaggg ttagcataag
     1321 cttttgctct tctatactag cgtgtccgct tacatgaatt tcactaaatt cttgatacgc
     1381 tactttagct cctgctttta aaagatagtc aagcaccgca gaaacacttg cttcatttcc
     1441 tggtatggct ttagctgaaa taatcacttg atctgtaggt ttgattttta taaatttatg
     1501 ctcatcagtt gccattctat aaagcgcact catggtttcg ccttgacttc ctgtagttac
     1561 gataagcact tcattgtctt tatatttgct tacttcatca gcatcgatga aaatttttct
     1621 atcaagtttg atgtagccta attccatagt ggtataaaga tttctttcca tagaacgacc
     1681 gatcacacaa acttttctac cgtattttaa accataagtg atagcttgat aaacgcggtg
     1741 gatattagaa ctaaaagtac tcatgatcac cctgcctttg gtacgtgcaa agatttgatc
     1801 aaaagttggc cctacggagc tttcactttt tgtataacct tctttgtacg aatttgtact
     1861 atcgcttaaa agacataaaa ccccttcttc tccataatgt gccaaacgtc ctaagtctgt
     1921 tggatagcca tcgattggag tttgatcaat tttaaaatca cctgtgtgga taatcgttcc
     1981 tgcttttgtt ttgatcgcaa gtgctgaagc atcaatgata gaatgcgtga tgtggatcca
     2041 ctctatatca aattcgccta tctcataaac acggcgtttt tctacagggc gaaaccattt
     2101 gcgttctgct tttaagccat gttcttcaaa tttgtttgaa atcattccta aagccaaagg
     2161 tgtagcgtag ataggaaatt ggaattcttt aaagaaataa ggcactgcac cgatatgatc
     2221 ttcgtgtgca tgagtgatca ctataccacg aattttatct ttaatttttc ttacatagtc
     2281 aaaatcaggg atgataatat ctaccccatg catagttcca tcaggaaaac tcatacctat
     2341 atctactata attgcatctt tattggtttc aaaaacactg atatttccac caatttctcc
     2401 taaacctcct aaaggagtga tgcggatttt atgctcgcta gaattattat attttaaagg
     2461 gtgtaagcgg ttttcatgtg aaacacggtt agcttctatg cattctgcaa gagcgatttg
     2521 ccaatcttca ttacctgtga gttttgaagg aagattgcga tttttcttct tttttttctc
     2581 agttttattt tctgagtttt cagaattttc cttgttggaa ttttgatcaa tttttggagt
     2641 atcattttca ttttgcaaag aatcagctaa tttttttcta cgatttttat atttatagcg
     2701 tttattgttt tttgaatttg agttcggatt ttgttcgttt ttatttatct ctttgttttc
     2761 gtccatattc atcctttaat ttgtcataaa ttttaaggta taaatcaacg caaatttcat
     2821 gtggtctgat gttttctttt aagccaagag tgcttaaaac ttctaaaact tttgctttat
     2881 atgtttttaa atttcctaag agttgttttc taggagcttt aaaacaatct tttagaaaat
     2941 ttttgaaatt ttctatttcg caaagttcat caaaatcctt agttttaatc aaactcatca
     3001 ccgctgacat aacttttggt ggaggattaa aacattgtgg atcaacatca aaaagtattt
     3061 ttctttcgca aatcattgca cttaaaacac ctaaggaaga aaactcacta tttccttctt
     3121 tagcgcagaa tttttcagcc atttcccttt gtaccattac aataagccct agacaatttt
     3181 tatcttctaa agcttttaat ataatgtgac ttgcaacata ataaggcaaa tttgcaacca
     3241 aaaaatatgg tttttcatca agactaggat taaaagcttc gcttgcgtct tgatggatca
     3301 agttaaattt tccacattca agttcttttt gaaatttctt ttttaaaata ggtatgagat
     3361 cattatcgat ttcataagct tttacttgag aaatttttaa aagttcttgc gttaaatcac
     3421 ctaagccagg cccaatctca atgatattgt tcatctcttt gggtatggct tggatgattt
     3481 ttgctaatac gcttttatcg attaaaaaat tttgtccgta ttgttttttt gctttaacca
     3541 taagaaataa ttttatctaa aaattcttaa ttaagtcttt ttaggtagaa ttatttttgt
     3601 aaaatttcat aaggatcaaa atgattgttt gtgcgggtgg aaatgaaaat ttttcttttg
     3661 caaaagccat aggcataggt ttggttgagt cagcttttca tttgagtcaa ctttacttca
     3721 aagaaaaacc atcaaaactt atatttatag gaacttgtgg gctttatgat aaaggagaga
     3781 ttttagaaat ttatagaagt tcgcacgctt ttaatgtaga attttctaaa atttcacatg
     3841 cattttatac tcctgcaaaa tatgaaattt gcttagaaaa agaaaatgtt tctcgtgaaa
     3901 caataaaaat caattcttca aattatattt gtcaaaattc aaaagcagca aaagaatttt
     3961 caaaattagg tttttttgca gaaaatatgg aagccttttc tgttttgagc gtagctaaaa
     4021 atttaaatat tgatgcagag tgtattttgt gtgcaacaaa tttttgcaat gaaaacgctc
     4081 acgaagattt tataaaaaat catcaaaagg caaaagaaaa attagaagaa tacttaaaaa
     4141 aatatcatta tatttaaaaa ttcaaaaaag gaaaataatt ttgaaagagc ttgttaatat
     4201 tttagatttt ttacctgaag aattaggaga aaaaatcaaa ccgatgtttc gcgtgaaaca
     4261 aatttatcaa tggatttatc aaaaatacgc caataatttt tccgatatgt caaatttacc
     4321 aaaagatcta cgtttagaac ttgcgcaaaa ttttcatttc tctcctgtaa aatgtgttaa
     4381 aaatgagcaa agtaaagatg gaagtataaa atatcttttt gaactcgttg atggtttaag
     4441 gatagaaagt gtgcttttgc ctatgaaaga agaaaaaata gacgcagaag gcaaaagaat
     4501 ttctcatgcg agatatacta tctgtgtttc ttctcaagta ggttgtaaaa gtggatgtag
     4561 tttttgtctt actgccaagg gtggtttgaa aagaaattta agtgcaggtg agatagtcgg
     4621 acaaatttta tggatcaaaa aacaaaacaa tatcccttat gaacgccgtg taaatatagt
     4681 atatatgggt atgggcgagc ctttggataa tcttaaaaat gtttctaaag cggtaaaaat
     4741 tttagcgcaa aatgagggac ttgctataag tcctcgccgt caaaccatca gtactagcgg
     4801 tttggcaaaa caaatcaaag aattaggtca aatgaattta ggtgttttac ttgctatatc
     4861 attgcatgcg gttaatgatg agcttcgaac cgaacttatg cctatcaata aagcttataa
     4921 tatcgctgcg attatggatg cggtgcgtga atttcctata gatcaaagaa aaagggtaat
     4981 gtttgaatat cttttaattg atggtatcaa tgataagctt gaacacgcta aagaattagt
     5041 caagctttta aatggcatta aagctaaagt gaatttaata ctctttaatc cacatgaagg
     5101 aagtttatat aaacgcccta gtttagaaaa tgcgattaaa ttccaagatt tactaagtaa
     5161 taaaggtgta acttgtacta taagagaaag taaaggactt gatatctcag ctgcttgtgg
     5221 acagcttaaa gaaagggcaa aagaacaatg acaatgctag atattttcga aatcattttt
     5281 ataacaactg ttgtaattat aggttttggt ggaattgttt ttgtagtaac aaaagaaaaa
     5341 aaataattat tacacttaat ggtgtcaagg gggagacttg aactcccgac ctccggctta
     5401 tgagaccagc gctctaacca gctgagctac cctgactaaa aataaaaata taattatact
     5461 actttttact aaaaattttc tgatttttaa aaaaataatt ttattttcaa tatttaaaaa
     5521 atttctttat ttttaaagct tttatagata taatgaacgc tttatttcat agacaggtgt
     5581 ccgagcggtt gaaggagcac gcctggaacg cgtgtaaagt gcaagctttc gagggttcga
     5641 atcccttcct gtctgccatc aaataaactt taaggcaaac taagttataa tacaaacttc
     5701 atttggggca ttagctcagc tgggagagca caacgctggc agcgttgggg tcagcggttc
     5761 gaacccgcta tgctccacca tatggttccg tagctcagct ggtagagcac taccttgaca
     5821 tggtagtggc cgttggttca agtccaatcg gagccaccat cacccttcct tatacaaagg
     5881 attatcatgc aaaacactat catacaaaaa gccatccata aagatttaaa ttctatactt
     5941 gaaatcacaa aagatgcttt aaatgctatg aaaactatga attttcacca atgggatgag
     6001 aattatccca atgaaatagt ttttcaagaa gatatacaag cacaagaact ttatgtgttt
     6061 aaagaaaatg atgaaatttt aggctttatc tgtatcaatg aaaaatttga acctgaattt
     6121 tacaaacaag ttatttttaa caaaaattat gatgataaag ccttttatct acaccgttta
     6181 gctgtcaaac aaaatgcaaa aggcaaaggc gtagcacaaa aacttttaaa tttttgcgaa
     6241 aattttgcct tggaaaatca caaggtaagt ttaagagcag atactcatag taaaaatttt
     6301 cctatgaatt cgctttttaa aaagcttgat tttaattttt gtggaaactt tgacatacct
     6361 aattaccaag atcctttttt agcttatgaa aaaattctaa accaaaaagc tttttgagtt
     6421 tttttcatag gctttgattt gtgcttcatg ttttaaagtt aaagctatat tatcaagccc
     6481 ttccaaaaga caaattctgt gaaaatcatc taaatcaaaa gaaaaaatct tatctttaaa
     6541 aaatactctt ttttccaaca aagaaatttc tatattttta tcttgggatt tttttaactc
     6601 atcaactatt tccaaaacct catctttagc aagttctata gtgagcaaac cgtttcctaa
     6661 ggcattgttt ttaaaaatat ccgcaaaaga aggtgcgata atagctctaa taccataatc
     6721 aaccaaagcc caaggcgcat gctctcttga agagccacta ccaaaatttt caaaactcac
     6781 caaaatagag ctattttgat attctttttt attgagatta aaatccatat ttaaaacact
     6841 ttctttatca tctaaataac gcaaatcatg gaacaaatgc ttgccaaaac cttgcttaga
     6901 cactgcaagt aaaaattgct taggtataat ttgatctgtg tctatattgg catattctaa
     6961 aggacaagct atacctttat gtataataaa tttttgcata ttaaactcct aaatactttc
     7021 tattatcaca aataacacct tctatggcac aagctgccgc acttgcagga ctcatcaaat
     7081 gagtgataga acctttacct tgtctgccta caaagttacg atttgaagtt gaagcaactc
     7141 tttgacctga atttgctttg tcatcattca taccaagaca catagaacac cctgcatatc
     7201 tccactcaca ccctgcctcg ataaaaatct tatcgagtcc taaattttca gcttcttttc
     7261 ttacttgcat tgaaccaggc acgattaaag ctttaacatt tttatgaatt ttgcgccctt
     7321 ttaagatatc agcggctatt ttaagatctt ctaaacgccc atttgtgcaa gatcctataa
     7381 atacaatgtc gatttttacc ccttctataa cttgatcttg ctctaaattt acataagata
     7441 aagcatcaag caaagatttt tgctcacttt gatttttaaa atcacttatt tttggaattt
     7501 tttcatctat accaatcact tgcgaaggat ttgttccata gctaatttgt ggttttatct
     7561 tgcttacatc tagagtaata ctctcatcat attttgctcc ttcatcgctt cttaaactct
     7621 tccaatactc gcaatacttt tgaaattctt ctcctttagg tgcaaattcc tttcccttaa
     7681 tatactcaaa agtgatctca tcaggagcta tcatacctac tttagctcca aattctatag
     7741 ccatattaca aagagtcatt ctagcttcca tgcttaaatt ttttataagt tctccacaaa
     7801 attctatagc ataacctgtg ccttttgctg tgccgtattg tgcgatcaaa tacaaaatca
     7861 aatccttagc ataaacgcct ttttgaaact gccctttaca ttcgattttc atagttttaa
     7921 gtttggcttg ttttaaagtt tgcgttgcca tgacatgctc tacttcactc gtgcctatac
     7981 caaaggctaa agctccaaaa gccccatgtg ttgccgtatg agaatcccca caaactaaag
     8041 taaccccagg taaagtaaag ccaagctcag gacctactat atgaactatg ccttgatttt
     8101 tatctccaag tcctaaaagc cttactccaa attccttagt attttgcatc aaagttgtaa
     8161 tttgctcttt tgccatatca gaacaagcat ttaaatccac acttttagtt gaaacatcat
     8221 gatctatggt agccaaagtt aaatccgctc ttgccattct acgcttagcc attttaagcc
     8281 ctgaaaatgc ttgagggctt gttacttcat ggattaaatg tctatcgata taaagtatag
     8341 gaagttcgtt tttgccttca taaaccacat gagcatcaaa gactttctca tataaagttt
     8401 tagccattat tattctcctt taaaatttct aaaatacaat cccccatttc atcggtattt
     8461 aaatacgact tagcatttaa atccttagtc atttttcctt gtgccaatgc caaagatata
     8521 gcattttcta tatcctgtgc ggcttgttct tctttgaaac tatactttaa catcaaagcc
     8581 gcacttaaaa tttgagctat gggattagct atatttaaat gagctatatc aggtgcactt
     8641 ccacctgctg gctcataaag tccaaaacct ttatcgttta aacttgctga acttaacaaa
     8701 cccaaagatc cattaatggc agctaactca tcgctcaaaa tatcaccaaa aagatttgaa
     8761 caaagcataa catcaaaaat gctaggattt tttacaatct gcatcgcagc attatccaca
     8821 tacatgtact ctaagtttat atcttgataa tcttttgcaa catttgccac cacttctcgc
     8881 cacaaaatag aacttgctaa aacattcgcc ttgtcgatta aatgcacttt tttctttctt
     8941 attcttgcac tttcaaaagc gatatgggct atcctttcta tctctttttt agtgtaaatt
     9001 tcagtatcat acgcactttc cttgcctaaa tcttgcttgc caaaataaat cccacctgta
     9061 agctctctaa cacataaaat atccactcct ttttggataa tctcattttt taaaggtgaa
     9121 gcatgagtta aactttcata aattttacaa ggacgcaaat ttgcaaacaa attaaaatgc
     9181 tttcttaaag gcaaaagcga ggctctttca ggtctttgat ctatgggcaa attatcccac
     9241 ttaggcccac ccacagagcc aaataaaatc gcatcacttt gctcacaaag ctttaaagtt
     9301 tcatcactta aagccactcc ataagcatct atacttgcac cgcctatttt agcttcatta
     9361 aattcaaaac taaaattgta tttttgcgcg ataaaagtta aaatttttaa agcctctttc
     9421 attaccaaag gccctatacc atctcctgct aagacagcta ctttataagt tttcatgcca
     9481 cattttcctt tcttctactt ttaaagagcg ataaatcgca ttgtaagcac tcacaaaagc
     9541 ttgtgctgaa gcttctataa catctgttga aagtcctttt ccatggaatt ttctcccttt
     9601 aaattccaaa tccacatcca cttgcccttg agcatctact cctgaacttt ttgcattgat
     9661 actataagct tttaacacag gctttaaatt tgttatccta gcaatgcagt taaaaactgc
     9721 ttcaacagga ccatttcctg tgcaagcttc agtttttagc tcttctttga tacgcataca
     9781 aacacaagcg gttgggatat tgccactaat cacgcttaat ttttcaatca caaattcatt
     9841 ttcttcttca ttttcatagc ttaaaaacat caaagcttcc aaatcataat catatacttg
     9901 acccttttta tccgcaaggc gtaaaaaacg ctcataaaca tcatctaaat tataagtatt
     9961 ttcatcatag cctaaatttt caaggcaagt ttttatcata gcccttccac ttcttgccgt
    10021 cattaacata cgattttcat gaattcctat ggcactaggg cttatgatct cgtaagtttg
    10081 cctattttta agcactccat cttgatgaat gcctgaacta tgagaaaacg cattgctacc
    10141 cactatagct ttatgcgaag gtatgctttc attagtgata gctgaaacta attttgaagt
    10201 tttaaagata ttttcacatt taatatcagt ataaaaacct tttaaataat ctttcctagt
    10261 ttttatcgcc ataaccactt cttctaaagc acaattgccc gccctttcgc caagtccatt
    10321 tatagtgcac tctatctgtc ttgcaccttg taaaatagca cttaagctat tgcccgttgc
    10381 cacacctaag tcattgtgac aatgcacaga aatgatagct ttgtctatat ttggcacttt
    10441 gttaaataaa attttgatga tattagcaaa ttcacttggc aaggtatagc ctactgtatc
    10501 tgggatattt atagttttag cgcctgcttt tatcgcattt tccaccataa aacaaaggtt
    10561 atctatcgga gttcttcctg catcttcgca tgagaattct acatcatcag tataagatct
    10621 tgctcttata atcgctcttt ttgccataga caaaatttca tcaaaatctt tttttaattt
    10681 atcttgcata tgcaaagtcg aagtggctat aaaagtatga attctaaaat gctttgccac
    10741 ttttaaagct tcataagcca tatctatatc tttatccaat gctctagaaa gtgcacaaat
    10801 agttgagttt ttcaccttag aagcgatctt ttgcaccgct ttaaaatccc cttgtgaaga
    10861 taccggaaaa cctgcttcta taacgtctac gcctaaattt tcaagcgcta aagcgatttg
    10921 taatttttga ttgataccca aagaactgcc taaagcttgt tctccatcac gcaaagtggt
    10981 atcaaagatt atgattttat tatctttcat gatttaatcc tttaaaacca aacagactga
    11041 atgaattaaa aattcaaaaa cttaacaaca atgataaaaa attaaaaatg taaaaaatga
    11101 ttaaaaataa aattgagttt tagagtgaga gttgcagtag cagattaaaa gtattgtctt
    11161 tacttttttg ttggactgaa tttgaaattt caaaaatttg tttcatcttt tcctcctttg
    11221 ttaaaattaa tacttaatgt atcatatttt tagtaaatgt gtttgtaaaa ttcttaaatt
    11281 aagaaaatta ttgatataat tgtaatttta agtaacaaaa aggaagttga tgttaaaaga
    11341 actcttagag attaaaaaag aaatggaacc tgttatccac gaagccaatg tgaaattaaa
    11401 tgtcctagct cgtgaagtca tagtccgaaa aaaagaatac gaaatttatg ggcctatggt
    11461 agatcgtgtt tatcttgata atgccattta tgttaaagtt atgtcaagtg gacgcgatgt
    11521 aaaaacagac aatgtgacta taaaaaatgg tttttatatg gtttttgttg cccctgaaaa
    11581 agaaagtaca aaagatatca aaaataaact caaagtagct tatgaaggac ttgataacaa
    11641 atttatcgct acacttatac gatcttgcca acgctttaaa gagatcataa acaaaaccca
    11701 agctacactt gctaaagctt ctaaaatgaa tgtggtagta aaaacgaatt taggtgaagc
    11761 aagtgctgct ctaaaattta acatcactat agaatatact aaagagaatc aaaaactcac
    11821 tcgtgaaaat tcaaaatcag caggaagttt cagagatact aaaacttata tcaatcttgt
    11881 agtagaaaaa aatacagatt ctcaaatttg tgaaaaacta cttgatgatg ttgaaaaata
    11941 ctttatcggt ggaggttgat ttcattaatg caagttataa aaacttgcat tagattaaaa
    12001 tttataatta tatcctaaat atacaccata atttgtttgt ttaggatcgt aaaagtttga
    12061 acccacttta ttttgataaa aatttctaga attataatga atttgctctg ctttaaagcc
    12121 taattctatt tcattatgtg gtgtcaaatc atataaagca cctattttcg ctccataaaa
    12181 ataaccgtca aaattttgcg acaaagataa aaagcttgtt tttaaggtaa gatctgttct
    12241 tgcatatcct ccatacacac ctaaaacagc tctggttttt tcaaaaagct taggagtaaa
    12301 atcataacct gttaaaaatt tatgtgtagt aaaatcacct tcgatttgaa ttttaggagt
    12361 tttgataaaa tcactaaatt catcagaata attataacca gcataaattc tatgattttc
    12421 atttaaacga tatccaagtt ttagaccaaa cgatggtata ttacctgaaa tatctccatt
    12481 aaaattttgc tttgtattct tatgttttaa ctcacttttt acttgagcat gcatccaagc
    12541 tgcatcagca cctataaaaa aaccagaatt ctcatctgct aaagccaaat ttgaaaacaa
    12601 agtagcactt gcgataatgc ttaataattt tttattc
//
LOCUS       DARGBD010000047        12562 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.047, whole genome shotgun sequence.
ACCESSION   DARGBD010000047 DARGBD010000000
VERSION     DARGBD010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12562
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.047"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(104..1042)
                     /gene="accA"
                     /locus_tag="SFZ04_001069"
     CDS             complement(104..1042)
                     /gene="accA"
                     /locus_tag="SFZ04_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HEG8065345.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(1044..2258)
                     /locus_tag="SFZ04_001070"
     CDS             complement(1044..2258)
                     /locus_tag="SFZ04_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEG8065346.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMALRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(2285..2518)
                     /gene="acpP"
                     /locus_tag="SFZ04_001071"
     CDS             complement(2285..2518)
                     /gene="acpP"
                     /locus_tag="SFZ04_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8065347.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            2628..3296
                     /gene="tenA"
                     /locus_tag="SFZ04_001072"
     CDS             2628..3296
                     /gene="tenA"
                     /locus_tag="SFZ04_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEG8065348.1"
                     /translation="MMLFSNLIKENQKIWDAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(3320..4177)
                     /locus_tag="SFZ04_001073"
     CDS             complement(3320..4177)
                     /locus_tag="SFZ04_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HEG8065349.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLAKAKNTLDKGAKERIN
                     TFLAKGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDTF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKETVGLDY
                     NIIDASKIA"
     gene            complement(4181..5146)
                     /locus_tag="SFZ04_001074"
     CDS             complement(4181..5146)
                     /locus_tag="SFZ04_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEG8065350.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKDCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGSDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEWHKDLVKMIKAAQEAAVKE"
     gene            complement(5143..6978)
                     /locus_tag="SFZ04_001075"
     CDS             complement(5143..6978)
                     /locus_tag="SFZ04_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG8065351.1"
                     /translation="MGEFSRRDFIKTACISVGALVASSSGVYALDDSSKMDKDANLPS
                     CDVLVIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FEKGAKTHELAQKWQARFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKNLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLSARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDIVVTEFSLDGRRVQ"
     gene            complement(7315..7725)
                     /locus_tag="SFZ04_001076"
     CDS             complement(7315..7725)
                     /locus_tag="SFZ04_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEG8065352.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            complement(7732..8475)
                     /gene="fabG"
                     /locus_tag="SFZ04_001077"
     CDS             complement(7732..8475)
                     /gene="fabG"
                     /locus_tag="SFZ04_001077"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEG8065353.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSGVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            complement(8547..10025)
                     /locus_tag="SFZ04_001078"
     CDS             complement(8547..10025)
                     /locus_tag="SFZ04_001078"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEG8065354.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGGGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDASPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLIEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDKKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            10105..11166
                     /locus_tag="SFZ04_001079"
     CDS             10105..11166
                     /locus_tag="SFZ04_001079"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEG8065355.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAVI
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWMENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            11166..12374
                     /locus_tag="SFZ04_001080"
     CDS             11166..12374
                     /locus_tag="SFZ04_001080"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEG8065356.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQEAKNLQSEYDFFYDVMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYEKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVTILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYEPLNSFVMEKNKLEEIKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
BASE COUNT         4127 a         2451 c         1672 g         4312 t
ORIGIN      
        1 atttaaaatc atttttgaag tataaaaaaa gaatactttt aattaactta attttgataa
       61 caattataaa taataaaatt atttaaaaaa gcgaagtaaa agcctaagcc tcttgatagg
      121 ctccaagctt taaaattttc tgcatacgat ttgcagaaag ttctcgtaca tcaatatttt
      181 caagttcatt tagagatttt tttacataat cagcaatagc tactgctgca gcctctttat
      241 tgcgatgtgc accatttgta ggctcatcta taacatcatc aattaaacct tgagatttta
      301 aatcatcagc cgttaccttc atagccttgg ttgcagcttc actttttgca ggatcattcc
      361 aaagtattgc agcacaacct tcaggagaaa ttactgaaaa aacagaattt ttcatcattg
      421 caagtttatc tgcaacccct atagctaacg ccccgccact accgccttct ccgataacta
      481 tagcaatggt cggtattttc aaatcactta attcatataa atttctagcg atagcttcac
      541 tttgtcctct ttcttcagca cctattccag gataagcacc tggagtatct atcaaaaata
      601 aaataggaat ttgaaatttc tctgcaagtc ttgctactct taaggctttg cgatatcctt
      661 caggatgtgg catcccaaaa tttctagcga ttttatcttt tgttccacgt cctttttgct
      721 caccaattac aattattttt ttctctccta aataacccat aaaacaaaca atagcaggat
      781 catctctaaa ggcacgatca ccatgtattt cgtgagcgtc atttaaaata agttcaatat
      841 agtcaagagc ataagggcga tctggatgac gcgctaattg caaacgctga aaatcactta
      901 aattcttata agttttagaa atttcttttt caagattttt ctttaaaatc gatacagctt
      961 cagtatctcc tttaatctga gcattgataa tgtcctcgtc aatttgctga atattttttt
     1021 caaaatctaa ataagaagcc atattaatct acttttttaa atacaacaca gccatttgtg
     1081 ccaccaaaac caaaagaatt actcatcacc acttttaaat ctacttttct tgatatattt
     1141 ggaatataat caagatcaca ttcatcatct tttacaagct gattgattgt aggtggaact
     1201 accccatctc ttaaagccat aacactaaca actgcttcaa ttgcacctgc agcacccaag
     1261 caatgacctg tttgtccttt ggtggaactt ataagcggga tattattgcc aaaaagctct
     1321 ttaattgctg ctgtttcatt tttgtcattt acaggggttg aagttccatg tgcattgata
     1381 taatctacct ttggattccc tgccatattt aaagcttttt tcatagctct taaaggccca
     1441 tctaaagttg gtgaagtaat atgatgcgca tctgcacttt ctccaaatcc aattaattca
     1501 gcataaatcg tagcaccgcg ttttttagcc tcttcatatt cctcaaaaac taaagctcca
     1561 gcaccttctc ccatgacaaa accatctctt tctttgtcaa atggtcttga agcatgctgt
     1621 ggatcttcat ttctagttga taaagctttc attgaagcaa aaccacctat acctacagga
     1681 caaatcgcag cttctgcacc tatgactaac atctttttag catttcccaa agctatactt
     1741 ttataagctt ctcctatagc atgagttcct gctgcacaag ctgtaacaca agaaatattt
     1801 ggccctttaa gtccatgctc tatagaaatc aaacctccta acatatttac aagtgctgaa
     1861 ggtatgaaaa aaggggaaat tttacgcgga cctcgctcgg aacaaataat ggaatttttt
     1921 tctatgttag gcaaacctcc aataccagaa gccgaaacaa tgccaaattc ttctttatct
     1981 aattcttcac taaatccagc atcctgcatt gcttctcttg ctgctttaat tccaagttgt
     2041 atgaaacggt caattttttt tacttctttg ccatcaacaa cctctaatgg atcaaaattt
     2101 ttaacttcag ctgcaatttg aacaggaaag tccgtagcat caaaaagagt aattttattt
     2161 actccgcttt ctccattgca aattgcttta aatgaacttt ctttatctaa accaagggca
     2221 ttgatcatac caatacctgt aactacaact cttttcaaga ataagctcct tgcaagaaaa
     2281 aaaattattt ttttagattg tcaatataat ttacaacatc ttcaatttta attaattttt
     2341 cagcatcact atctggaatt tctacttcaa atttttcttc taaagccata ataagctcta
     2401 caacatctaa agaatcagca cctaaatctt caataatttt tgattccatt ttaactgcat
     2461 ctgcatcaat acttaattgc tctactacta ctgcttttac atcatcaaat gttgccattt
     2521 gttctccttc aaaaaattaa aataaagcgt attttactat aaaaagctta aaatatttat
     2581 agtttttcat tatacttgaa aataaaatat taaaacataa aggaaaaatg atgcttttct
     2641 ctaatttaat caaagaaaat caaaaaattt gggatgctta tctacatcat gattttgtta
     2701 aaaaattaga agataaaagc ctaaagcaag aaaattttct tttttatctc aagcaagatt
     2761 atatttattt gcttaattac gcaaaatgct acgcaaggtt agcacttaac tcaaatactg
     2821 caaaagaact tcgttttgct atgaaatttc aaaattatat agttgaagga gaaatggagc
     2881 ttcatcgtgc aattttatct cttggcatta atgcagatga actcgatata aaagatgaaa
     2941 gtttagtcaa tatagcctat tcgcgttata tgttaagcgt aggtgaaaat ggagattttt
     3001 tagatatgtt agttgctctt agtgcttgcg ctataggcta tgcaaaaata ggtgctgaaa
     3061 ttataaatcg tttaaaaaat gaaaatttaa aagatcatcc ttacaaggaa tggattttga
     3121 cctatggaag tgaaaatttt caaaatgaag ctaaagaatt tgaagatttt gttaattctt
     3181 atacttcaag tgttagtgca caaaaattcc aaaaactcag cgaaattttt catactgtaa
     3241 cacgcttgga agtggctttt tgggagcatt ctttaagaat ggaattaaat ctttaaacat
     3301 gggctttttg cccatgtttt tatgcaattt tacttgcatc aataatatta taatctaaac
     3361 caaccgtttc tttagaaagt cctaatgcaa gtcctactaa ttgtgataaa tgaataatag
     3421 gcaatcttgc tttagaatta gtataatctt gaaatctttc ttgatagata tcaagctgca
     3481 tttgacaaag tggacaaggt gttacaacac aatcagcttg attttcactt gcattattga
     3541 caatttgact agacattttt ttcacagatt tttctgcagg ataagaagca tgaaaaccac
     3601 aacaatcaag gcgtttttca aaaggaacta ttttagcccc taaaacttct actacacttt
     3661 caaaactttt tggattggtt gaactttctt ttttaccgaa agtatcttca ggtcttaaac
     3721 tatggcaacc ataaaataaa gctactttta aatttgaaag cggctttttc accttgcttt
     3781 ttaaattatc caaatcctca taaagctccc acaaaagact tgtaataggc gttgaacctt
     3841 gatatttcat tccacctttt gctaaaaaag tattgatgcg ttcttttgca cccttatcaa
     3901 gagtattttt tgctttagct aaagttagca tacaagtact acaagttgta agcattggca
     3961 ttttcatctc ttctgctaaa gcaatatttc ttgcattagc taccaaagtc gcaataggat
     4021 caacacactg cgcttgagaa gccccacaac aactccaccc cttaatttca ttcaacttcc
     4081 aacccaaaat aggtgcaata gcttcaagtg aaattttaga ttcttttgca gcttgagata
     4141 aaacacaacc tggaaaaaaa gcgtattctt tttgcatatt ttactcctta acagcagctt
     4201 cttgtgccgc ctttatcatt ttaaccaaat ctttatgcca ttctatttca tcctcgccaa
     4261 aaacatgcat aggattcatt tttcctgcac gcataagttt aaaagctata tctgttttac
     4321 ccatagaacc tataacaccc tcagaacgca aagcaagata aatttcattc aagcgtcctg
     4381 aaccttcaac taaatcttta taaaaagctt cagcatgatc agaccctaag ccttcattta
     4441 aacctttttt aatcgccatc actcttaaat ttgctatatc acttactgaa cttataccct
     4501 ttggacaacg atcagcgcac tcttgacaat gaacacaaag ccaaagtcca ttcattacgc
     4561 tgggttttac atgcaacata ggatccttac ctcgagagtc cgccgctgca cgccaagcat
     4621 gagtaaaaac aaaaggttgc atataatcgc tactatctgc ttctaattta ttacactctg
     4681 aagcacagct accacataaa atacaatccc attgcttgct aatacgatca aattcttctt
     4741 gactttgttt acagtccttt tccgctgaaa attcattttt tgccaccatg gcaggacgaa
     4801 tttttcttaa attttctata gaaggctccc aatccacaat taaatcagaa attactctaa
     4861 aatttccaag cggagaaatg cgtatacttg aaggattatc atattctttt aacaaatctt
     4921 gcattttagt atcacaagca agataagaat gcccattcac acgaactgca caagccccac
     4981 aaattgcaga ttgacaagag gcggtaaaat ttaaagtaat atcttttgtt tttttgataa
     5041 aaagcaaaag agagagcaga gtttttcctt gtatatcctt atcatcaata tcataacttt
     5101 gttcatattt ttccttgcca ttaaaacgat ctatgataat tttcattgta ctcttcttcc
     5161 atcaagtgaa aactcagtta ccacgatatc tttataacta agttttaatt catcattttc
     5221 taaatttaca atgctatgtt ttaagaaatt tttatcatct cgctttggat aatcttctct
     5281 agtatgagcc ccacggcttt caagtctatt tctagctgat aaacaagcac agcgagaaag
     5341 taaaatcaaa ttaccaagct ctacataatc tgtaaaagca gtattcatca cttcattagg
     5401 atttggaata cgaatttttt catatcttgc ttgtatatct tctaaatttt ttgctagaag
     5461 atcgagtttt tcttgagttc taaaaatccc catattatcc caattttgac ttcccaactc
     5521 ttctcgcaat tcatacattt cttgaccatt tccgccatta tttgtaattt ctttaaatct
     5581 agcctgccat ttttgagcaa gttcatgagt ttttgcccct ttttcaaaac ttgcatcttt
     5641 ggcataattt gtcgcaccaa tgcctgctaa atgccccgtt acaactgcat cggctaaaga
     5701 atttccccct agtctattag ctccatgtat agaaatacaa gaagcttctc cacctacata
     5761 aattccagca attttagtac tcatatcttc aaatttagcc acttcaattc cacccataga
     5821 ataatgcgcc gttggacgga taggtacagg agtatctact aaatcaatat tttcaaaaag
     5881 cattgcagtg tgacgaattt ttggtaaatc ttttaaaatt ttttcttttc ctaagtggcg
     5941 tacatcgcac aaaacataag ctccaagtcc ctcgccataa cctctacctt cacgaatttc
     6001 tgtttctata gcacgcgcaa ccacatctcg cggtgcaagc tccatttttt catggtaatt
     6061 tttcataaaa cgctcaccac gattatttaa aagatatccc ccttcaccgc gcgccgcttc
     6121 tgtaataaga gttccaccat ttgcaactcc tgttgggtga aattgtatca tctcaggatc
     6181 ttcaaaacca agtcctgctc taagagcagc tgccacacca tctcctgtgg caataaaagg
     6241 agttgaagtt ctattataaa atatccttgt gtatccccct gtagcaatca ccaaagcttt
     6301 gcataacaca ggataaattc caccgctttg tatatctctt aaaacgacac cctcgcattt
     6361 tccatccaca acacctatat ccaaaagttc atgatccatt aaaaatttca caccactact
     6421 aatagcatca tctaaacaag aatgcattaa aatatgacct gttttatctg cagaatagtt
     6481 acagcgtttc ttagaagctc ctcccattaa acgctgagct actccacctt gctcatttct
     6541 tgaaaacaag gttcctataa aatccatatt aaaaatagcc tttccagcta attcgcaaaa
     6601 ttttaaagcc gcgtcttgat ctaccaaata agctccgcct ttaatagtat cataagcatg
     6661 taatttatag gaatctccat tagaaaaatc agtaactcca ttaattccac cctctgccat
     6721 acaagttgcg ttacgcgatg gcatcatctt tgtagctact acaacgctta attttggatt
     6781 ttcttttctc actgcggctg cagcacgcaa acctgctcca cctgatccaa ttaccaaaac
     6841 atcgcaagaa ggtaaatttg catctttatc catcttagat gaatcatcta aagcataaac
     6901 tccacttgaa cttgcaacta aagctcctac actaatacag gctgttttta taaaatctct
     6961 tctagaaaat tcacccatat cattctcctt atttaaaaaa attaataata atttttaatg
     7021 taagtcaatc ttacataacc gcatgccaaa aatccaaaaa caaactctcc tttcaatata
     7081 aaatggatta aaaacaaatt tataatttag taaatataaa aaagcataag ataaataatc
     7141 aaagaagata gatgaatata ataaaataaa tattaaaaaa tgtttgcaat atatcataat
     7201 ctattccttg caaattaaac ggaatgatta taccttaaaa aataacaaaa agttaatatt
     7261 aattaagata atatttatct taattaatat atagttaata aaattatcaa atcattaagc
     7321 cttaaaaagc ttaaattctc cattcataaa ttgcattcta gcgcttaaat gatcaagata
     7381 aaaaacttca aattttggat tttgcggagt ttcataaaga tttacaagat aaggatattt
     7441 tttaaacatc atttttttaa cttctaaatt tggttcaaaa accgcattag ctctaagtct
     7501 taaaaaagtc ccatcttttg cacaagaaca aaattcaata ccattataat tttttatatg
     7561 cttaaaaagt ccttttgtat ttgctgtgca aaaataaatt ttatctccca caagcaatgg
     7621 actttgtata ggacgcactc taggatttcc acaagttcct aaagtggcta aaaatgctgg
     7681 tgcattatca tctaaaaatt gtgctatttc ttttaaatcc atcatttctc cttacatata
     7741 taaaccacca ttgatcttaa gcacatcgcc tgtcacataa gaggcataat cactaagtaa
     7801 aaacgctaca caattagcca cttcttcagg ttctgcaaag cgttttaaag ggatattgtc
     7861 ttgataggtt tgtttgattt catcacttaa aacttcagtc atatcgcttt ttatgaaacc
     7921 tggagtcaca cagttaaagc gtaaatttct acttgctcct tctttagcaa aagatttagt
     7981 catagctatc attccacctt tactagcaga ataatttact tgtccagcat tacccatttc
     8041 tccgacaata gaagcgatat ttacaacagc accaaagcgt tttttactca tggtttttaa
     8101 agcttctcta caacctaaaa aagctgagct taaattcgta tccacaacgc cactaaagtc
     8161 ctctaatttc attcttaaag caagtttatc atttgtaacg cctgcattat ttacaagata
     8221 acttaattct ccatcactct caactatagt ttttacaccg ttttcaaact catcttcttt
     8281 gcttgcatca aatttaatca cagcagcaac gccaccactt gcaataattt catcttttaa
     8341 agcatctgca agttcaggtt ttgaacgata attgatccaa actttaagtc caaaacccgc
     8401 caaagttttt gcgatagaag cacctattcc cttacttgct ccagtaatta aaacattttt
     8461 tccactaaat ttcattatct atccttaata agtttaattt taaaaattgc aatcttaaca
     8521 aatttcttat aaaaaaggca aacaaactaa aataaagcct cattcatttc ttttggaatt
     8581 tctaagtcta aaattttaag cacgcttgca gcgatattgc taagccccat attatcttta
     8641 atctttgaaa ctccctttgc ttgcacaaaa acaaaaacat caaaagtggt gtgattggta
     8701 agcaaatttc ctttttcatc ttgcatagcc tcgcaatttc catgatcact tgtaatgata
     8761 aaagcataat catgcttttt tgcacattct ataatctcgc ccaaacaagt atccaccgct
     8821 tcgacagcct ttatagcagc attaaaatca cctgtatgtc caaccatatc tccatttgca
     8881 aaatttacca ctataaaatc ctcacccttt tctatgcctt ttttcactgc atcacacact
     8941 tcaaaagcac tcatttgggg ttttttatca taagttttta ccttggggct tgggattaaa
     9001 acccttgttt cattttctaa aagctcttct tttccgccat taaaaaagaa agttacatgg
     9061 gcgtattttt cggtttctgc ggtatgaagc tgactaagcc ctgctttaga aatcacttgc
     9121 gctaaagtat tttcaatttt ttctttttca aaaagcacag ggagtttaaa tttatcatca
     9181 taaacactca tagtaagtaa attttcaaag attttttcgc gttcaaactc tttaaaatcc
     9241 ttagaattta acacttcaat aagttgtttc attctatcat ttctaaaatt gataaagata
     9301 atgccatctt cttctctcat gcccttgtaa ttctcatttt gagctgcttt aataaactca
     9361 tcagtaacat tttcatcgta agatttttgt aggtattcta ataaatttgg cactttataa
     9421 gccttaccta acaagcactc ataatactct tttaccctat cccaacgctt atctctatcc
     9481 atagcataaa aacgcccaca aagcgtagca aaatgcacgc ctaagttttc acaaaattct
     9541 tttaaatctt ttatgaaatt taagccactt tttggacttg catcacgccc atcagtgatt
     9601 gcgtgagcaa aaacttcatt gccatttttc gcacaaattt caagcatggc tttaaaatgc
     9661 gtatccatag aatgcacccc gccatcacta taaagcccta taatatgcac tcttttacat
     9721 tttgctaaaa gtttttgcaa attctcattt ttttcaagtt ctttgttttc aatggcttta
     9781 ttaatacgca ctaaattttg ataaataata cgcccacctc ctatacacat atgccctact
     9841 tcactatttc ccatctgccc ttctggcaaa cctacagcta aaccactcgt ttttagtaaa
     9901 gaatttggga cttccttaaa aagcttttca taacttggtt ttttagctgc ttcaaaagca
     9961 ttaaacttac tattcttatt ataccctatt ccatctgtaa taattaaaac gcatttttgc
    10021 ttcatttttc tctcttttat aagaattttt ttggttagat tttactaaaa ttaaactttt
    10081 aaaaaccaaa aagaaggcta ggttttgtat tatctttcag atttaagtca ttatgctttt
    10141 tttacttata ttagtgtgcg tgcaggattt gcatttttta tcgctttatg tttgtcttta
    10201 tttttaatgc ctaaatttat tacttgggca aaagctaaaa atgctagtca acctatttac
    10261 gaatacgccc cagaaactca taaaaccaaa tgccatactc caaccatggg tgggcttatt
    10321 ttcatcagtt ctgcagtaat cgcaagttta ttttgtatca aatttgataa tatttttgct
    10381 ataagtgctt tactttgttt gatacttttt tgtttgatag gactcataga tgatttaggc
    10441 aaagttctaa aaaaagataa tcattcagga cttagtccaa gaatgaagct tttagcacaa
    10501 atcatcgctg gacttatctg catcttacct ttatatttta gttcagagct tagcacggaa
    10561 ctttttatac ctttttataa acaccctctt tttgatatgg aaatttttgc cattgctttt
    10621 tggattttgg ttttaatttc tagctctaat gctgtaaatt taaccgatgg acttgatggc
    10681 ttagctacag ttccaagcat tttttcttta tctactttag ggatattctt atatttgagt
    10741 ggaaatttaa attatagtga atatctactt ttgccaaaaa ttcaaggact tggtgaagta
    10801 gtgattattt gtgcagcgct aattggtgct ttaatgggat ttttatggta caactgttat
    10861 cctgcacaag tttttatggg agatagtgga agtttagctt taggtggctt tataggattt
    10921 ttagccgtta ttagcaaaaa tgaaatttta cttttactca taggttttgt ttttgttctt
    10981 gaaactgttt ctgtaatttt acaagttgga agttttaaaa tttttaataa aagagtattt
    11041 aaaatggcgc ctattcatca tcattttgaa aaagttggct ggatggaaaa taaaattata
    11101 gtgcgttttt ggatgatagc cttactttca aatttgcttg cacttgcatc aataaagcta
    11161 agataatgaa aatttcactt tttggatacg gaaaaaccac acgtgctatt gctgaaaatt
    11221 tagtagataa atttggacct tttgatattt atgatgatca ttttacagaa acaaaaaaag
    11281 atacactagg aaatttactt ttaaatccta atgattttga tgataattta agcgacattg
    11341 aaattcctag tccaggtttt ccaccaaagc acaaactcat tcaagaagca aaaaatttac
    11401 aaagtgaata tgactttttt tacgatgtca tgccaaaatc tgtttggata agtggaacta
    11461 atggaaaaac aaccactact caaatggcta cacatttatt atcacatatt ggtgctgtta
    11521 tgggtggaaa tgttggaact cctttagcag agcttaatcc ttatgaaaaa ctttggatac
    11581 ttgaaacttc atcttttacc ctacactaca ctcataaagc taaacctgaa atttatgcac
    11641 ttttacccat cagtcctgat catctttctt ggcatggaag ttttgataat tatgttcaag
    11701 ataagctaag cgttttaaaa agaatgaatg aatgtgatgt aacaatactg cctaaaattt
    11761 atgcaaatac tccaacaaaa gctcataaaa taagctatga agatgaaaaa gatctagctg
    11821 ttaaatttgg cattgatacg gaaaaaattt cctttaaaag tcctttttta ctcgatgcta
    11881 tcatggcttt agctatagaa aaaattctac ttgatacttt aagctatgag cctttaaata
    11941 gctttgtaat ggaaaaaaat aaactcgaag agattaaaga cagtcaaaat aggctttggg
    12001 taaatgacac taaagccaca aatgaaagtg cagtaatggc tgcgcttagt cgctataaag
    12061 ataaaaaaat ccatcttatc atagggggag atgataaggg tgtagatctt agcaatttat
    12121 ttgattttat gaaaggattt gatatagaac tctatgctat aggtattagt accgaaaaaa
    12181 tgcttgatta tgcaaaaaaa gcgaatttga aagcctataa atgtgaagtt ttatctaaag
    12241 ctgtaaatga aatttcaaat cacttaagag tcaatgaagt agctctttta agtcccgctt
    12301 gtgcaagttt agatcagttc aactcttacg cagagcgtgg aaaagtcttt aaagaatgtg
    12361 tgaataaaat ttaatttatt ttacttttca tagaaaattt taaattttat ccttctagta
    12421 ttttcaaacc cctaaaaaca ccctattctc tctaaaaacc ctaaccagca gcaaactctt
    12481 ttttaaacac gattctaagt atcatctaaa acaacaataa aaataaacat aggatttata
    12541 tataaagtaa gtaatgaaga ca
//
LOCUS       DARGBD010000048        12198 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.048, whole genome shotgun sequence.
ACCESSION   DARGBD010000048 DARGBD010000000
VERSION     DARGBD010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12198
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.048"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            111..839
                     /locus_tag="SFZ04_001081"
     CDS             111..839
                     /locus_tag="SFZ04_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8065357.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            861..1640
                     /gene="peb1A"
                     /locus_tag="SFZ04_001082"
     CDS             861..1640
                     /gene="peb1A"
                     /locus_tag="SFZ04_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HEG8065358.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKNYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1642..2394
                     /locus_tag="SFZ04_001083"
     CDS             1642..2394
                     /locus_tag="SFZ04_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8065359.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2405..3064
                     /locus_tag="SFZ04_001084"
     CDS             2405..3064
                     /locus_tag="SFZ04_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8065360.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3172..4101
                     /locus_tag="SFZ04_001085"
     CDS             3172..4101
                     /locus_tag="SFZ04_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEG8065361.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            4268..6379
                     /locus_tag="SFZ04_001086"
     CDS             4268..6379
                     /locus_tag="SFZ04_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HEG8065362.1"
                     /translation="MTQLSTKILWLFVATLGAICFGFLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFNGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSIAPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIRKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            6360..6557
                     /gene="kcuS"
                     /locus_tag="SFZ04_001087"
     CDS             6360..6557
                     /gene="kcuS"
                     /locus_tag="SFZ04_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HEG8065363.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEYMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(6597..7010)
                     /locus_tag="SFZ04_001088"
     CDS             complement(6597..7010)
                     /locus_tag="SFZ04_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG8065364.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            7072..8904
                     /gene="ciaB"
                     /locus_tag="SFZ04_001089"
     CDS             7072..8904
                     /gene="ciaB"
                     /locus_tag="SFZ04_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HEG8065365.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLIDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQL
                     KIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDENDFDVLKFGNEIKESFEHVYKNIGLEDCELEKEVLSNIE
                     KTQLYICTPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMK
                     ISSEVFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFFIANDTEKTMNQSGFF
                     KNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLISWQRVDEVRPYYTEGLIH
                     LSLLFESEVLIFENNNLKINFDLGHYKKFKELTLKNYHELAKHYALRLDAKEFLSRFC
                     EIEDNIFLPIMPKCKEFVKFYYDLYEKIGNEIDNSGEFERYKKK"
     gene            9006..9302
                     /locus_tag="SFZ04_001090"
     CDS             9006..9302
                     /locus_tag="SFZ04_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEG8065366.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            9429..10328
                     /gene="cysM"
                     /locus_tag="SFZ04_001091"
     CDS             9429..10328
                     /gene="cysM"
                     /locus_tag="SFZ04_001091"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HEG8065367.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(10335..10895)
                     /locus_tag="SFZ04_001092"
     CDS             complement(10335..10895)
                     /locus_tag="SFZ04_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEG8065368.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(10892..11344)
                     /locus_tag="SFZ04_001093"
     CDS             complement(10892..11344)
                     /locus_tag="SFZ04_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065369.1"
                     /translation="MRKIIFILAFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCD
                     LNVKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGVIK
                     PKIHRLNSTDYESKIVLAACVLDTMRFRVEFIDNNKPIGFYFDFELKK"
     gene            complement(11348..11767)
                     /locus_tag="SFZ04_001094"
     CDS             complement(11348..11767)
                     /locus_tag="SFZ04_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEG8065370.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTNKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHKTIELKNIDSKEF"
     gene            complement(11853..>12198)
                     /locus_tag="SFZ04_001095"
     CDS             complement(11853..>12198)
                     /locus_tag="SFZ04_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065371.1"
                     /translation="LNLQDCVFSFNKKNIEVSAYPKPIKIFNKTTIKIKNFPHYSNLK
                     IKIYSLNSYIGDIIPKFNIVNGDILINFIGRSITDDSRFRVEFLNNNAPTGFFFDFDV
                     TMQKNFQTGNTH"
BASE COUNT         4204 a         1476 c         2171 g         4347 t
ORIGIN      
        1 ctttggaaat ttattagtaa aaataagtta cattttgaag tagttttctt tatttaatga
       61 taaaataatt tcaattaatt ttatatttag ctaaaaataa aggaaaaaac ttgattgaat
      121 taaaaaatgt aaacaaatac tacggaactc atcatgttct aaagaatatt aatctttctg
      181 ttaaagaagg tgagaagctt gttattatag gtccaagtgg aagtggaaaa agtacaacta
      241 tccgttgcat gaatgggctt gaagaagtta gttcaggaga ggtcgtagtt aacaatcttg
      301 ttttaaatca taaaaataaa attgaaattt gccgaaaata ttgtgcaatg gtttttcagc
      361 attttaattt atatccacat atgacggttt tgcaaaattt gaccttagct ccaatgaaac
      421 ttcaaaaaaa atctaaaaaa gaagctgaag aaacagcttt taagtattta aaagttgtag
      481 ggttgctgga taaagcaaat gtttatccag caaccctttc aggtggacaa caacaacgcg
      541 ttgctatagc aagatcactt tgtactaaaa aaccctatat tttatttgat gaacctactt
      601 cagcccttga tccagaaacc atacaagagg ttttagatgt aatgaaagaa atttcacatc
      661 aaagcaatac taccatggtg gttgttacac acgaaatggg ttttgcaaaa gaagtagcag
      721 ataggattat ttttatggaa gatggtgcta ttgtggaaga aaatattcct agcgaatttt
      781 tctcaaatcc aaaaactgaa agagcgcgac tctttttagg gaaaattctt aaaaattaac
      841 caaaattgaa aggagaaaaa atggttttta gaaaatcttt gttaaagttg gcagtttttg
      901 ctctaggtgc ttgtgttgca tttagtaatg ctaatgcagc agaaggtaaa cttgagtcta
      961 ttaaatctaa aggacaatta atagttggtg ttaaaaatga tgttccacat tatgctttac
     1021 ttgatcaagc aacaggtgaa attaaaggtt tcgaagtaga tgttgccaaa ttgctagcta
     1081 aaagtatatt aggtgatgat aaaaaaataa aactagttgc agttaatgct aaaacaagag
     1141 gccctttgct tgataatggt agtgtagatg cagtgatagc aacttttact attactccag
     1201 agagaaaaag aatttataat ttctcagagc cttattatca agatgctata gggcttttgg
     1261 ttttaaaaga aaaaaattat aaatctctag ctgatatgaa aggtgcaaat attggagtag
     1321 ctcaagctgc aactacaaaa aaagctatag gtgaagctgc taaaaaaatt ggcattgatg
     1381 ttaaatttag tgaatttcct gattatccaa gtataaaagc tgctttagat gctaaaagag
     1441 ttgatgcgtt ttctgtagac aaatcaatat tgttaggtta tgtggatgat aaaagtgaaa
     1501 ttttgccaga tagttttgaa ccacaaagtt atggtattgt aaccaaaaaa gatgatccag
     1561 cttttgcaaa atatgttgat gattttgtaa aagaacataa aaatgaaatt gatgctttag
     1621 cgaaaaaatg gggtttataa tatgaatgaa agtgtaggtt ttgttgaaca tttaagacaa
     1681 attcttactt cttggggttt atatgatgaa aatagtataa gcccttttgc ggtatggaaa
     1741 tttttagatg ctttggataa taaagatgct tttattaatg gttttattta tactttagaa
     1801 gtaagcattc ttgctttgct tatagctaca atttttggaa ctataggcgg agttatggct
     1861 acaagtagat ttaaaattat cagagcctac actagaattt acgtagagct ttttcaaaat
     1921 gttcctttgg taatacaaat tttctttttg ttttatgcct tgcctgtttt aggtataagg
     1981 cttgatatat ttactattgg tgtattgggt gttggggcgt atcacggagc ttatgtaagc
     2041 gaggtggtta gaagtggaat tttggctgtg ccaagaggtc agtttgaagc ttctgcgtct
     2101 caagggttta cttatattca acaaatgcgt tatattatag tacctcaaac cattagaatt
     2161 attttaccac cgatgacaaa tcaaatggta aatttaatta aaaatacctc tgtattgctt
     2221 attgtaggtg gagctgagtt aatgcattct gctgatagtt atgcagctga ttatggaaat
     2281 tatgcgccag cttatatatt tgcagcggtt ttatatttta taatttgcta tcctttggct
     2341 tattttgcaa aagcttatga aaataaatta aaaaaagcac atttaacgag ataaagggtt
     2401 gttaatggaa aatgttttta atgcgcaaaa tattgaattt ttaatgcaag gtttatttct
     2461 gacattaaaa atagccttgg caacttgtat tatttcgatt gtttttggaa cttttttagc
     2521 tataactaaa aattatgggg atagattaag taaattttta gcagcttgct atatagatat
     2581 ttttagaaat actcctttat tattatggat gcttgcagct tgttttgttc tacctgtatt
     2641 ttttggacaa tttcctcaag ctttttgggg tactatagga ttttcacttt atacgagttc
     2701 ggttatggct gaaattatta gaggtggatt aaattctata ccaaaaggtc agtttgaagc
     2761 agcttattct caaggttttg gtaaattttt tactcttttt tatattattt taccacaaac
     2821 ttttagaaaa ataatacctg ctttattatc tcaaattgta accactgtaa aggatacagc
     2881 ttatttagcg ggtttaggta tagctgaact tacttataat tcaaaaacta tattggcaaa
     2941 actaacaagt tttgaagaaa ttttagcgat gataggtgtt gttgcgggaa tttattttat
     3001 aatatgtttt tcactttcta tgttggtaag atattatgcc aaaaagacag cttacatttc
     3061 ttaaaaaagc ttatattttt atataagctt tttaaattta cagcagtttt taacattttt
     3121 tttattaaaa tcttttgtat taattcataa ttttattgat taaggttttt tatgcgaggt
     3181 tataaaattt tttcaggctc agctaatgtc gaatttgcaa gacaagtttc taaatatctc
     3241 tccctgcctt taagtgatgc tggagtaaag cggtttagtg atggagagat tagtgttcaa
     3301 attgatgaga gtgtacgcgg aaaggatgtt tttattattc aaagtacttg cgctcctaca
     3361 aacgataatt taatggaact tttaattctt acagatgctt tgcgtcgctc aagtgcaaat
     3421 tcaattacgg ctattatccc atattttggc tatgcgagac aagatagaaa agcaaatcct
     3481 agagtgccaa ttactgctaa acttgtggct aatttgattc aagcagctgg gattgatcgc
     3541 gtagctacga tagatttgca tgcaggacaa attcagggtt tttttgatat tccagtagat
     3601 aatctttatg gaagtatagt ttttaatgat tacattaaag ccaaacattt taaaaatgct
     3661 attataggaa gtccagatat agggggtgtt gcaagagcta ggagtgttgc aaagcattta
     3721 ggacttgata tagttatagt tgataagcgt cgtgaaaaag ccaatgaaag tgaagtaatg
     3781 aatattattg gagatgtaaa agataaagaa gttatcttag tggatgatat tattgatact
     3841 gctggcacta tagttaaagc cgcggaagct ttaaaagaaa aaggtgcaaa atctgttatg
     3901 gcttgctgta ctcatgcagt tttaagtgga aaagcctatg agagaatagc aagtggagtt
     3961 ttagatgagc ttgtggtaac agatactata cctttaaaag agcaattacc aaatattaaa
     4021 gtattaagcg ttacacctgt ttttgctgaa gtaatacgtc gtgtttatca taacgaaagt
     4081 gtaaattctc tctttattta gattaaaaaa gcttaaagat tatttttaag cttttcattt
     4141 ttatgctact taaagaaaca aaaaacatat atttttttaa aaatgtgaaa aaactaaaca
     4201 tctttctata taatttaatc tataaatctg ctattctttg aaaatatttt attttcttag
     4261 gagaaatatg actcagttaa gtactaaaat tttatggttg tttgttgcaa ctttaggcgc
     4321 tatttgtttt ggttttttag ctttacaaaa tggcgaaagt gtatcagcga tttatttggt
     4381 ggttgctgct gtatgtattt atatgatagg atatagattt tatgggcgtt ttgtagctta
     4441 taaggtttta gaacttgata aaaatcgtgc aacaccagca cttgtagaaa atgatgggcg
     4501 tgattttgtg cctacaaata aagctgtatt atttggacat cattttgctg ctattgcagg
     4561 agcaggtcca ttagtaggac ctatcttggc cgctcaaatg ggatatttgc cttctatgct
     4621 ttggatttta gtaggaggag ttttagcggg tgctgtgcat gattttgttg ttctttttat
     4681 atctactcgt agaaaaggta gaagtcttgg cgagatgatt aaggatgaga tgggtaaatt
     4741 tacaggtgga gttgctatgg tggcgatttt tggcattatg cttattatta ttgccatttt
     4801 agctatggtg gttgtaaaag ctttagcaga atctccatgg ggtttattta ctatcgcaat
     4861 gactattcct atagcaatat ttatgggcat ttatatgcgt tttatccgtc caggtagagt
     4921 aggggaggct tctataatag gttttgtgct tttaattttg gctattcatt atggtagcgt
     4981 tatagctgct gatccttatt gggctaaaat atttacttta gaagctccaa ctttggcaat
     5041 tgttatgatg gcttatggtt ttattgcttc tgttttacct gtgtggtttt tacttgctcc
     5101 aagagattat ctttcaactt ttttgaaaat cggtgttatt gtggtaatgg ctgtagctat
     5161 tgttttggtt gctcctgatt tacaaatgcc aaaagcaaat actcagtatt ttaatggaac
     5221 aggtccagta tttgcaggtg gagtgtttcc atttttattt attaccattg cttgtggtgc
     5281 gatcagtggt tttcatgctt tgatttctag tggaactact cctaaaatgc ttgaaaacga
     5341 aactcatact ttggctgttg gatatggctc tatgcttgct gagagtgctg tggcgattat
     5401 ggctttaatt tgtgcttgta ttttacatcc aggtctttat tttgctataa attcaagctc
     5461 tgctttgata ggaacagatg ttgtaaatgt agcacaaact atttcaagtt ggggatttag
     5521 tattgctcct gaagaaatta ctactttaac cacaaatata ggagagcata ctatactttc
     5581 aagaacaggg ggagccccga cttttgctat aggtgtagct ttgatcttgc atgaactttt
     5641 tggcggcgtg gatttgatgg ctttttggta tcattttgct atattgtttg aagctttatt
     5701 tattttaaca gcggtggatg ctgggacaag ggcttgtcgt tttatggtgc aagatatatt
     5761 gggtaatgtt tataaacctt taggagatat tcataattat ccagctggac ttttggctac
     5821 ggctttaagt gttgcaggtt ggggatattt tctttatcaa ggcgccattg atcctaaggg
     5881 aggaatttat acactttggc ctctttttgg cgtgagcaat caaatgcttg cgggtatggc
     5941 tttgcttctt gctacaacta tacttgtaaa aatgggcaag gcaagatata cttgggttac
     6001 tttagtacct gcggtatttg tcttagtggc aactctgtat ggaggaattc aaaaaattat
     6061 gccttatgaa gaaggcaata aaatagcaaa tgcggtaagt catgtagccg ccgttagcat
     6121 acaaagtcaa aaaattaaag atttagaatt taaattaaat aatactaaag atgaaaaaga
     6181 aatttctaca attagaaaag aaatttcaat agccactcaa aataaagttg gaaatttact
     6241 taatgcaatt ctttgtgtgt tctttatgat agctaccttg cttgttataa tttcttgtat
     6301 aggaatttgc ttaggtaaaa ttaaaattcc tcttaaagaa actaagtata ttaagattga
     6361 tgaatttcaa aaaatttaag tattattatg aaaaagccga aaggtttttt catcccttgg
     6421 tgggactttc tagttatgat aagtatttag aatacatgaa acaaaaacat ccaggaaaaa
     6481 ttccaaaaac cagaggggaa tttttcaaag aatgtctaga taaaaaatat aatagtggcg
     6541 gtttaaataa atgctgataa gcttaaagga taaagtttta tcatacaaaa taagctttaa
     6601 gcatttaaaa agccatgaat tcttttaagt tcttcactaa taggtttttt ctttccatct
     6661 cttgtaacac ttacataagt tactaaagcc gaagttacat taatgcaaga agtacaacct
     6721 tgagaatcca ctctttgagc tgtgacttct acttcaacgc tgattgaagt gttgcccaca
     6781 tttacaactt tagagtaaca agaaattata tcgcctataa aaacaggttc tttaaaaact
     6841 actttatcca tagagatggt tacaacgcgt tcaggagaaa gttctcttgc tgcgatagct
     6901 cctgctaaat cgatttgtga aagtatccat ccgccaaaaa tatttcctgc tggatttgtg
     6961 tcacttggca tagctacaat ttttaatttt ggttctccca tatctctcat ttttactcct
     7021 tattttaaaa aatgaattat aattaaaaaa gttaaaaagg agaataaaag catgaataat
     7081 tttaaagaaa tagctaaatt ggttagaaaa tacaaagaaa gaaataatgc gttatatgag
     7141 tttttagaca aagaagatgt gggcgagtat tttagatctt tgatttcttt aagtgagtta
     7201 aaacaagata agacaactat gctagccata cttaggcgtt tgattgattt aaaagaagaa
     7261 aatttagttc aagagtggaa aaaaaacaac tttaaggaag ataagattat agagttaaaa
     7321 cataagttct atgaagaggt tagaaagttt tatgaaaaag aacatcaaaa tttaattaat
     7381 gaaataaaag agaaaaaact tttaaataat ttttatcagt ccttaataca aggagtgcat
     7441 aatataggtt taattatgaa tatttttgaa atttcttgga ctaaagaaat tatagaaaaa
     7501 aataataaaa ttttatctac tcaatttcca aatttagatg atgcaatgga atttttacgt
     7561 aaaaatcatt tatatcaaaa aactccagaa ggagaaattt gtgagcgaag ctatggtgtt
     7621 ttagttagaa taggaaattt atggaaattt gttccttatg cgagattttt cgagaatgaa
     7681 attttaaaat tagaatttgc ttttgaaaat atgattgatc agcttaaaat atttgctagc
     7741 agcgaagagg aaaaagctta tatagaatat tttgaaaaat taaaattagc gttttgtgaa
     7801 aaagatgaag atagggttat aaaagcttgg caagaagctg aatttgcttg gatgaaagta
     7861 aaatcacctt tacaagtggg acatccctta gaatattatg aagataatta tactcatgcg
     7921 gtggcattag aatgggatat aagaatagaa gatgaaaatg attttgatgt tttgaaattt
     7981 ggtaatgaaa ttaaggaaag ttttgaacat gtttataaaa atataggact tgaagattgt
     8041 gaattagaaa aagaagtttt atctaatata gaaaaaactc aactttatat ttgcactccg
     8101 atgatatttt atggtgctga acttaaaggt ttattctcag ctcaagtcgt tccaaatgat
     8161 gagtttgtaa gttctaaggc gggcaaaaaa atatttgcct ttataaattt tgtatatgaa
     8221 aatgctaaaa caaagccttt tatgaaaatt tctagcgagg tttttgataa agaatttttg
     8281 gattttggaa gaaatatttt attttatcag gaaaaaattt ggaaaagggt ttatgaagta
     8341 tcaactatag gccatgaatt tggtcatata ttttttattg ctaatgatac cgaaaaaaca
     8401 atgaatcaga gtggtttttt taaaaatata gaagaatata aagctactac aggtggactt
     8461 ataaatttct tttatcatga acaagatgac ttgataatgc ctgtttttca tgaactgata
     8521 aaaagagcta ttggacttat ttcttggcaa agggttgatg aagttagacc ttattataca
     8581 gaaggactta ttcatcttag tttgcttttt gaaagtgaag tattgatttt tgaaaataat
     8641 aatttgaaga taaattttga tttagggcat tataaaaaat ttaaagaact aactttaaaa
     8701 aattatcatg aattagcaaa acactatgct ttaagacttg atgcaaaaga gtttttaagt
     8761 agattttgtg aaattgaaga taatattttt cttcctatta tgcctaagtg taaagaattt
     8821 gttaaatttt attatgattt atacgagaaa attggtaatg aaattgataa tagtggagaa
     8881 tttgaaagat ataagaaaaa ataataaagt tttttgaaaa aaacttaaaa aaagctgttt
     8941 tttacttgat attgtttttt aaatatgcta aaattaggcg tttcaattaa aacaaaggag
     9001 cttttatgac taaagcagat ttcatttcat tagttgctca aacagctggg ctaacaaaaa
     9061 aagacgctac tactgctact gatgcagtta tttctactat tactgatgtt ttagctaaag
     9121 gtgatagcat cagttttatt ggttttggta ctttttcaac tcaagaaaga gctgctagag
     9181 aagctagagt accaagcaca ggaaaaacaa tcaaagttcc tgctacaaga gttgcaaaat
     9241 ttaaggtagg taaaaacctt aaagaagctg ttgcaaaagc aagcggcaaa aagaaaaaat
     9301 aagacttcgg ctagataaat tctagccttc tttcttaatt aattcagata ttttgtatct
     9361 tttatttact ttattttttt aaacttttat aaaactatca ttattaaaca aaaaaggata
     9421 ttaaaattat gaaagtacat gaaaaagtaa gtgagcttat aggaaatact cctattatac
     9481 atttgaaaaa atttggtatc aatgtttttg ctaaatgtga atttttaaat cctagtcatt
     9541 ctataaaaga tagagcagct tttgaaatga ttaaagatgc tttagatagt aaaaaaatta
     9601 atcaagatac tacaatagtt gaagcaacta gtggaaatac tggaatttct ttggctatga
     9661 tttgtgcaga tttgggactt aaatttattg ctgtaatgcc cgaatctatg agtttagaaa
     9721 gaagaaaaat gataacactc tttggcgcta ggttagaatt aactcctgca aatttaggaa
     9781 tgaaaggagc ggttgataaa gcaaatgaaa tattattaaa tactccaaat tcttttatgg
     9841 tttctcaatt tgaaaatatt tcaaataaaa atgcgcatcg taagaatacg gctttagaaa
     9901 ttttaagaga tttggataat gaacttgata tttttgtagc tggttttgga actggcggta
     9961 ctattagtgg agttggggaa atactaaaag aaaaattaga aaaagtgcat attgttggag
    10021 tcgagcctct aaattctcca ttgcttagca aaggtgaagc gggaagccat aaaatacaag
    10081 gaataggggc gaattttata cctgctattt taaataaaga agttatagat gaagtgatca
    10141 cagtaagtaa tgaagatgct ataaatacag ccaaagaact tgccaaaagt ggtttaatgg
    10201 taggtatatc aagtggagca aatgtatttg ccgcaagtat gctagcaaag aaatttccag
    10261 ataaaagaat tttaactatg ctaaacgata cggctgaaag atacctctca actgatcttt
    10321 ttgcttaagt ataattattg agaatttaga aaaattctaa gttctcttaa aatttcttgt
    10381 ggatttaaat cgctaatttc tttataaaaa tgaccttttt catcaataag ataaagcata
    10441 ttgctatgtg ctatagaata acccataaaa gaatcattta gatctatttt ttgatattga
    10501 acattatatt gttttgttat tttttgaaga gttttttcat cttttgcaat taaggcatct
    10561 gcttttgggt aaaagtatcg taaccattcg tttgtattgc ttaagttatt atctctattt
    10621 ggatctaaag aaataaaaag aaggtgagcc ttaggattat tgatttgctt taaggctttg
    10681 cctactaaac taagagttgc cggacaaaca tcagggcaat aagtatatcc aaaatagata
    10741 ataagcttat ctcctttaaa atcttttagg gtggtttcct cttttaagtc tgattttaag
    10801 ataaaatcat aagaattttg atgattttta ataaaaaata ttacacctaa aataatggca
    10861 actataacta taaacaaaat aatatttttt ttcatttttt tagctcaaaa tcaaaataaa
    10921 accctatggg tttattatta tctataaatt ctaccctgaa acgcatagta tctaaaacgc
    10981 aagcagcaag aactatttta ctttcatagt ctgttgaatt taatcgatgt attttaggtt
    11041 taattacgcc catatacata tttaatccat aaattttaat tcctaagttg ttataatttc
    11101 ctagatttac aatctttaga tttgtaacat ctaaagattg taagggtttg ggatttaggg
    11161 aaattaagac ttttttattg ttaaaactat atgtgcagtc tttaacatta agatcgcaag
    11221 tcaatggggt agaaaaatca gtttttgtta ttttttgaga atcttttatt acataaaaat
    11281 caaaaataat atataaaata gcaataacaa aagcaaaagc taggataaaa ataatttttc
    11341 tcattaatta aaattcttta gaatcaatat tttttaactc tatggttttg tgattattaa
    11401 attttaaatc taaatttacc ttcgtgtctt taataatagg tttttttagt tttaaaagca
    11461 ttatatggta acctccagat ttaagctctg tgcttgaatg agcttttata ataatttcag
    11521 gaattttttg catcatcatt tttccatctt tatgtatatg tgtatgcagt tcactgactt
    11581 cactgatatc gcttttggca cttattagag caatatcctt attagtatta ttaaaaatag
    11641 taagaaaaat agcactattt tgcgcatgag gtggagtttg ttttacaaag gcatttttta
    11701 cctctatatc attaacagcc caaagattta cagcaaaaag agcacctaag agaagaattt
    11761 ttttcatatt gtatccttat ttttataata ttaaatattt gttcattata tcaaaaaata
    11821 tttttatttg aatataaaat tttgaaaatt tttcaatgtg tgttacctgt ttgaaaattt
    11881 ttttgcatag taacatcaaa atcaaagaaa aaaccagttg gagcattatt gtttaaaaat
    11941 tcaaccctaa atctagaatc atcggtaatg cttctaccta taaaatttat aagaatatca
    12001 ccattaacta tattaaattt aggaatgata tcgcctatat aggaatttaa actataaatt
    12061 ttaatcttta aattagaata atgaggaaaa ttcttaattt ttatagtagt tttattgaaa
    12121 atttttatag gttttgggta ggctgaaact tcaatatttt ttttattaaa agaaaaaaca
    12181 caatcttgta aatttaag
//
LOCUS       DARGBD010000049        12175 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.049, whole genome shotgun sequence.
ACCESSION   DARGBD010000049 DARGBD010000000
VERSION     DARGBD010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12175
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.049"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..146
                     /locus_tag="SFZ04_001096"
     CDS             <1..146
                     /locus_tag="SFZ04_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8065372.1"
                     /translation="SDVFIRVSCMDKILEFALEKQEFLKFDLKLYEELSLYFYEDAIC
                     FLN"
     gene            285..2258
                     /gene="acs"
                     /locus_tag="SFZ04_001097"
     CDS             285..2258
                     /gene="acs"
                     /locus_tag="SFZ04_001097"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEG8065373.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQALEKIEWFSSFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPDLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
     gene            2340..3164
                     /gene="galU"
                     /locus_tag="SFZ04_001098"
     CDS             2340..3164
                     /gene="galU"
                     /locus_tag="SFZ04_001098"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEG8065374.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            3158..4378
                     /locus_tag="SFZ04_001099"
     CDS             3158..4378
                     /locus_tag="SFZ04_001099"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEG8065375.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            4505..4954
                     /locus_tag="SFZ04_001100"
     CDS             4505..4954
                     /locus_tag="SFZ04_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEG8065376.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            5019..6056
                     /locus_tag="SFZ04_001101"
     CDS             5019..6056
                     /locus_tag="SFZ04_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8065377.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKVSEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKI
                     PIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKN
                     ILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYV
                     IYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNF
                     YSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFE
                     VISFDKFSLGF"
     gene            complement(6053..6784)
                     /locus_tag="SFZ04_001102"
     CDS             complement(6053..6784)
                     /locus_tag="SFZ04_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEG8065378.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(6759..7508)
                     /locus_tag="SFZ04_001103"
     CDS             complement(6759..7508)
                     /locus_tag="SFZ04_001103"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEG8065379.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFTYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(7505..8110)
                     /locus_tag="SFZ04_001104"
     CDS             complement(7505..8110)
                     /locus_tag="SFZ04_001104"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEG8065380.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLD
                     SQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM"
     gene            8171..9160
                     /locus_tag="SFZ04_001105"
     CDS             8171..9160
                     /locus_tag="SFZ04_001105"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEG8065381.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            9371..9712
                     /locus_tag="SFZ04_001106"
     CDS             9371..9712
                     /locus_tag="SFZ04_001106"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065382.1"
                     /translation="MHNLNEALFQKKIKEIRLKAIASIICGFLGIIPYLGVLFVLASW
                     ILFFIVLYDLKIYGGAKNLFKNFLISVGIGFFGILVNTSILFAMLKPRTGIFGGLYFN
                     QDNILWLLLYF"
     gene            9730..10587
                     /locus_tag="SFZ04_001107"
     CDS             9730..10587
                     /locus_tag="SFZ04_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065383.1"
                     /translation="MALIFPFLKAFYYEIARTTKQKYFTYAFNTFYLGLLTLIIGIGL
                     VFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILN
                     LLVLTFSFILEVISFEDFRFYYTKKTLFYTAIILALLSVFLFCKKIKNYKLFIYFFIW
                     QGLSVFGSHLLFIPDFMVDQQIVYGSLNIILSLCYIIFAFLFFKILIQITKEKLFYLI
                     FAFYVCIEILIILIFFIFMMVDNYYIFTKSPIKMLIDNYKLLFQVVYFVSFLIVWLML
                     KGQKNVKIC"
     gene            complement(11067..11932)
                     /gene="dcuC"
                     /locus_tag="SFZ04_001108"
                     /pseudo
     CDS             complement(11067..11932)
                     /gene="dcuC"
                     /locus_tag="SFZ04_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
BASE COUNT         4226 a         1585 c         2042 g         4322 t
ORIGIN      
        1 aaagtgatgt ttttataagg gtaagttgta tggataaaat tttagaattt gccttagaaa
       61 aacaagaatt tttaaaattc gatttaaaat tatacgaaga actcagtctt tatttttatg
      121 aagatgcaat atgtttctta aattaacata cattataaaa tttaaataaa atattacaaa
      181 tattcccatt ttttataaaa tttatattaa ttatttttta aatttgtatt taatacaaat
      241 aaactcttat ataatgttta aaaataacca tataaggagt ttttatgctt aatcaaaata
      301 atcaagagct ttttaagcca agtaaagaat tttctcgtaa tgctcgtata aaaaatttat
      361 gtgaatacta tgatttatgc gatgaagcca aggaagattt tgaaggtttt tggaaaagac
      421 aagcacttga gaagatcgag tggttttcgt ctttttcaag agtgttaaat gaggataaag
      481 ctccatttta taaatggttt gaaggtggaa ctttaaatgt aagttatcaa tgtcttgatc
      541 gtcatatgaa aacaagacgc aataaagctg ctttgatttt tgaaggtgaa atgggagatt
      601 atgaagttta tacttataga agattattgc atgaaacttg caaggcggcc aatttgctta
      661 aaaaattcgg agtaaaaaaa ggcgataggg ttgtaattta tatgcctatg attccagaaa
      721 cagctatagt aatgttagct tgcgcaagga ttggggctat tcatagtgta gtatttggag
      781 ggttttctcc tgaagcctta agagatagaa ttatagatgc aggagctaaa cttgtagtaa
      841 cggctgatgg tgcttttcgt cgtggcaaac cttatatgtt aaaacctgca gtagataagg
      901 ctttaagtga agggtgtgaa agtgtagaaa aagtacttat agttatacgc aataatgagc
      961 ctatagaata tattaaagga agggactatg tttataacga acttgtgaaa aatgagtctt
     1021 ataagtgtga acccgaaatt atggatagtg aggatttgtt gtttttgctt tacacttcag
     1081 gatcaacagg caagccaaaa ggagttatgc atgcaagtgc aggatatata ctttgggcac
     1141 aaatgactat ggaatgggtt tttgatatta aagattatga taattattgg tgtagtgctg
     1201 atgtgggttg gattacagga catacttatg tagtttatgg gcctttagca tgtggagcaa
     1261 cgactataat gcatgaagga actcctactt atccaaattc tgggcgttgg tggagaatga
     1321 tagaagagta tcaaataagc aaattctaca cttcgccaac tgccataaga atgcttcatg
     1381 ctgatgcacc taatgagcca agaaaatatg atttaagtac gcttgaagtg cttggaacgg
     1441 ttggagagcc tatcaatcct agtgcttgga agtggtttta tgatgaaata gggggaacta
     1501 aaagtcctat agtcgatact tggtggcaaa cagaaacagg tgggcatatg atcacgcctt
     1561 taccaggcgc cactccttta aaaccaggtt gtgccacctt gcctttgcca gggatttttg
     1621 cagaagttat tgatgaagaa ggcaataaaa aagatgaagg tgaagatggg ttgctttgta
     1681 taactaaacc ttggccttcg atgattcgtg gaatttgggg caatgatgaa cgctatatag
     1741 aaagttattt ttctcaagct aaaaaagatg gaaaagctgt atattttagt ggcgatggtg
     1801 ctttttatga taaaaatggt tatattacca tcacaggaag aacagatgat gtggttaatg
     1861 ttgcaggaca tcgtatagga acggctgaaa ttgaaagcgc tattgctaaa catccaagtg
     1921 tagcagaatc agctgtagtg agtattttgg atacgattaa gggcgagtca ttgtttgctt
     1981 ttgtggtttt aagtcctgca tccagttgtg atcttggcgg agctatagaa actttaaaag
     2041 aacttaatga cattttaaga gtagaaatag gacctatagc taaaatagaa aaaattcttt
     2101 atactccaga tttgccaaaa actagaagtg gtaaaataat gagaagaatt ttaagaacta
     2161 tagcaagagg tgaagaaatc aaacaggata tttcaacact tgaagattct aaagtagtag
     2221 aaaccattgt taaattagct aaggcagagt ttgaataaca aggtaaaaag aactttgcct
     2281 agttgcatga aaattcataa aaataagcta taatgataaa aaaataaaag gaaattttta
     2341 tgcttcaaac ttgtattttc cctgcggcag gttatgggac gagattttta cctgcaacaa
     2401 aaactttacc taaagagatg ttacctatct taaccaagcc tttgatccat tatggagttg
     2461 atgaagcttt agaagcagga atggaaaata tgggatttgt cacagggcgt ggaaaaagag
     2521 ctttggagga ttattttgat atttcttatg aacttgaaca tcaaatttca ggtacaaaaa
     2581 aagaatactt acttgatgaa attcgctctt tgatcaatcg ttgtaccttt acttttacaa
     2641 gacaaaatca aatgaaaggc ttaggtgatg cggttttaaa aggtagacct ttggttggcg
     2701 atgaagcttt tggcgtaatt ttggctgatg atttgtgtgt taatgaagaa ggcttaaatg
     2761 ttatggctca aatggtaaaa atttatgaaa aatatcgctg caccatcata gctgtgatgg
     2821 aagtaccaaa agagcaagtt tcaaactatg gagtaatttc tggaaatttt gtagaagaaa
     2881 atcttatcat ggttaattct atgatagaaa aaccaagtcc tgatgaagct ccaagtaatc
     2941 ttgctatcat aggaagatat attttaactc ctgatatttt tggaatttta gaaaatacta
     3001 aagcgggaaa aaatggtgaa gtccaactta ccgacgcgct tttaactcaa gcaaccaatg
     3061 gtatggtttt agcttataaa tttcaaggaa aacgctttga ttgtggaagt gtagaaggct
     3121 ttgtagaagc gacaaattat ttttacgaga aaagtaaatg ttaaacaata cacttttttt
     3181 taagcaaagt gaaattcaca ctataagttc ttatgcaaat cgtattaatg atgaggtaaa
     3241 aagtggagat atagggtatt atcatcttat tgatacaagt ttgaatttaa tcgatgagag
     3301 tttggctttt atcaaagaca aagaacacat aaaaaatatc gttttagtgg gaatgggtgg
     3361 ttcaagttgt ggtgtaaaag ccttgcgtga tatgcttttt aatgaaaaaa gcaaccaaag
     3421 agaacttttt atactcgata acacaagttc acattctttt aataagactt tagaaaaaat
     3481 caagcttgag gaaagtttgt ttttaatcat cagcaaaaca ggtagtacta tagaagttgt
     3541 atcgcttttt aaacttctta ttgaacattt taaacttgat atgcaagaat taaaaaaata
     3601 ctttgttttt attaccgata aggattcaaa acttcatcaa gaaggtgaaa atttaggtat
     3661 taaatgcttt tttatccctg caaatgtagg aggtcgtttt agcatacttt cagccgtagg
     3721 tatagttccg ctttgttttt gtggctataa tgccaaagct cttttagaag gagctaaagc
     3781 ttgttttgaa gattttttta ctcataaaaa agatgaaatt ttacaaaaag cctatcatta
     3841 ttgcacacac aaaaatgcca atatcaatgt acttttttca tatagtgatg cttttaaagg
     3901 ctttaatgaa tggtatatcc agcttattgc tgaaagttta ggtaaaaagc aaggctataa
     3961 acgtataggt ttaactccta ttgcactcat tggagcaaga gatcagcata gttttttaca
     4021 actcattatg gatggaccta aaaataaaac tgtaactttt ttaaaaatca aagacgctca
     4081 aaaagcacct attatccctg atattcattt taaattttta gattctttaa gtaataaagt
     4141 caatcttcac gaacttttaa acgctcaatg taatgcaact atgcacgctt taatcgctga
     4201 aaatttgagt gttgatgtga tagaacttga aaaacttgat gcttggcatg cgggatattt
     4261 gatgtattat tatgaacttt ttacttcaac ttgcggtgtt atgctaggga ttaacaccta
     4321 tgatcaacct ggtgtggaag ttggaaagtt gatcttaaaa aatatattaa attcttaatc
     4381 aaaattcatt aaaaaagagt ataataattt taagttaaaa ttataataaa aatttttaat
     4441 taataataat tattatttaa gaattttatg ttataatttt aaaaattaaa aaaaggagtc
     4501 aatcatgtca gttacaaaac aattattaca aatgcaagca gatgctcatc atctatgggt
     4561 taaatttcat aattatcact ggaatgtaaa aggtttgcaa tttttttcta tacacgagta
     4621 cacagaaaaa gcttatgaag aaatggcaga actttttgat agttgtgctg aaagagtttt
     4681 acaacttggc gaaaaagcta tcacttgcca aaaagtttta atggaaaatg caaaaagtcc
     4741 aaaagttgca aaagattgct ttactccgct tgaagtcata gaactgatca aacaagatta
     4801 tgaatatctt ttagcagaat ttaaaaaact caatgaagca gcagaaaaag aaagtgatac
     4861 cacaacagct gcttttgcgc aagaaaatat tgcaaaatat gaaaaaagtc tttggatgat
     4921 aggtgctact ttacagggtg cttgcaaaat gtaatttaag gggctttatg ccccaattat
     4981 acaaactagg ttataatatc cttttttaaa ggataaaatt gaaagtactt aatttttttt
     5041 atgaaaacca ccctaaattt gaagtaagtt atgaaagaaa aaatcaaatt tcaaaaccaa
     5101 atattattat aaaaggccca cgattttgtg gtaaaaaaac acttattttt aattttttat
     5161 ctcaatttaa agtaagtgaa attttgtttt tagatttata tgatacacgc tttgaaaaac
     5221 aaagtttaga aagacttgct gattttctga atgaaaattt acaaattaaa attctttgcc
     5281 tttataattt ggattttatc cctaatttag aaaaaattaa aattcccatc atcttaagta
     5341 caaatataaa agatttaaat ataaatgggt ttgaagaact tgaacttgat tattttgatt
     5401 ttgaagaatt tattagtgta agtaagaaaa atttacctat aaataattta gtaggtcttt
     5461 ttttgcaaag tggacgcagt aaatttggag aaaaaaacat acttctaaga caaagcttta
     5521 ctcttttaga attagaaatt ttaaagtatt tagctttaaa tttgggtcag caaatcagta
     5581 tttctaagat atttatagaa ctcaaaaaaa gattaaaaac ttcaaaagat agtgtttatc
     5641 aggctataaa aaaattagaa aatacttatg tgatctatac tttaaaacat gatgaaaaaa
     5701 aacttcaaaa gatttatttt aaagattttg gcctaagaaa taatctttgt atttcaaagg
     5761 atttttcaca tttatttgaa aatttagttt taagtgagtt atttaaattt aaagaagaat
     5821 ttttttataa caaatacttt aacttttata gccaaatatc taaaattgct tatatttcaa
     5881 gtccaacttt agatattgat ttgattaaat tacgtgctaa gaaaatttta ccaaaggctt
     5941 tagaacttgg aatttttcat gtgattttta tcactctttc aagtgaggat agtttttttg
     6001 aacaaggggt taaatttgaa gtcatatctt ttgataaatt ttcacttgga ttttaggtgt
     6061 tgtttgagtt tgtatcgtat ttttcaaggt tgtatcgttt gatgattttt gtaataagat
     6121 tgatataata tcccttgcgt tcagaataag aatctaaagt tttaatagcc tctagtcctg
     6181 ttatctcttt gccttcgctt gcaaatttag ctcttgcatc gcgaaacttt tcataagcaa
     6241 aatgacgatt taaatttaaa acataagagt aaacactatc ttgcagacta tcaaaaatct
     6301 taattttatg ttttttatct ggatgtctta aatcaggaat taaacctttc tcaccccaag
     6361 tccattctcc aaaaagatta tttgcttctc ttgcgaagcg acttgtacct gtagcacttt
     6421 caactaaagc ttgggctata cccatggatt ttggaatttt ttgaatacgt tttttatatt
     6481 ctgcaaaatc ataaagattt tcaatgcgat atttgttttt tatcgtgata agtttttcaa
     6541 gatttgtttg atttgaagtc ctaaagcctg ttttgtaagc atctttaaaa aaggcttcaa
     6601 taaaagctct ttcttgttca atttttttaa agctttgatc aaacatttca ttcattttta
     6661 taaaaaaaat ttgtcttttt tgatctatat caagtttgta atattcctct ccaaagccat
     6721 tttttagatc atcagcaaaa agtgggatta gaaaaagact aagaaaaatt ataattggct
     6781 tcaaaacaat actttacctt tccttcaaaa aacaattctt catttttata tgtaaaccca
     6841 acctcttcac cacttttagg agttatttta actttatttt gtactttttt atttaaaaat
     6901 gccagataaa aacaagcccc cattcctgtg ccacaagcta aggtttcatc ttcaactccg
     6961 cgttcatagg tacgaacttt taaatgattt tcatctaaaa tttttacaaa attaacattg
     7021 gcattatatt tttgtctcat tttttgacaa agtattgtat caaattcatc taaattttga
     7081 caaaaatgca ctagatgtgg aactccagtg tcgcaaagtt gccaagtttt tcctaattct
     7141 tcaaaagtat tttgcacgct ttttattttg cctaaagata cttcaacttt atcttgattt
     7201 acctttgctt ttattattcc tgcaccggtt aaaaaactca tgttaggatt tattttgtta
     7261 atatgatgtg caaaatgtgc cgcagccctt gagccattgc cacacatagc agcccttgag
     7321 ccatcgttat tataaaattc ccattcaaag tcgtattttt catgaggcaa tatcacgata
     7381 aagccatccc cacctatgcc ctcataacga ttgcaaagtt ctttagctaa agcacttcta
     7441 tcttcttttc tatcagcatt tgttatgaca aaatcattcc cacttgcaca atatttataa
     7501 aatttcacat ttttccttta gaaatttctt gtattacttt aacacattct tgcctaaaat
     7561 cgacataaga attagtattt ttaatgataa aatctgcttt tttaagtttt tcttcaatat
     7621 ctatttgaga atcaagtctc acttttgcag cttctaagct gagcttatct ctttgcatga
     7681 ttcttttaag gcttaattct ttaggtgtgt aaattacaat gactttgcct aaattttcat
     7741 aagcaccgct ttcaaaaaaa agaggaattt ctacaaaaaa agctttattt tctttatcta
     7801 gaatttgcat ttgttctaaa attttagctc gaattttagg atgagtgaaa ttttctaagg
     7861 tttttttagc ttctttgttg ttaaaaacaa tttctccaag gatttttcta tcgattttct
     7921 tttcttttgt gagtaaattt tttaagttaa agggagaaaa aatcttttca agttctaaag
     7981 cattttcatc taaaatttta tgagcaattt tatctgcgct aatgctttta aagcctaaag
     8041 aattcgctat ttctataaaa gtgcttttac cacaagcaat tgaagcggtt acaaaaaaag
     8101 catttttcat cttatgcctt attaaaactt ttttcgttaa aatacctttt tagttcttaa
     8161 aggaaaataa atgaaaattt catatgaaga tgcaggcgta agtatagata atggaaatgc
     8221 ctttgtagag gctataaaac ctttggttaa agaaactttt aatgataatg ttgtaggcgg
     8281 aattggttct tttgctggtg cttttagaat gccaagtggt tttaaaaagc ctgtgatttt
     8341 aggtgcaaca gatggtgttg gtaccaagct tcgcttggca attgatgcta aaaaatatga
     8401 tactataggg caagatttag tagcaatgtg tgtgaatgat ttgatttgta attttgctac
     8461 gcctttgttt ttcctagatt attatgctac agccaagctc gaagtagaag tagcaaaggc
     8521 tgttgtatca ggcattgcca agggatgtaa gatggcaaat tgtgcattaa tcggcggaga
     8581 aactgctgaa atgcctggaa tgtatgcaaa agatgatttt gatcttgcgg gttttgcagt
     8641 gggtatggct gaagaagatg agatcgatag aagtaaattt gttaaaaatg gtgatatttt
     8701 attggcactt cctagttcag gacttcattc aaatggttat tctttagcta gaaaagtact
     8761 ttttgaaagt ttaaaattaa aatttgatga caagatagag ggtaaaaatt taattgatat
     8821 tttgttagaa cctacaagga tttatgtgcg tgattttctt acactaaagc cttatatcag
     8881 tgctctagct catattacag ggggtggttt agtagaaaat ttaccacgcg ttttgcctcg
     8941 tggtatgggt gcaactatac gcaaacatca tcttaaaact cctgaaattt tttatactat
     9001 aggacaggct gtagaagaaa gcgaaatgta tagaagcttt aacatgggag tgggtttagt
     9061 aatggttgta gatccttcta atgtaagtaa ggttttagaa aattcagatg cctttattat
     9121 cggcgaaatt tgcattaatg aaggtattgt tttagagtga aaacaaatta ttatgattat
     9181 ttatgtgcta aaatgtatgt aattttgccc ataaaagccc ataaagacaa actaaaattt
     9241 tatctttctt atgtaaataa gaaagataaa atttttagag ttaatgtgtg gaagtgggcg
     9301 gttttgataa aaattgccaa agatgataaa acgaaatatt tttgttcgaa tgtattaaat
     9361 aaagggtaaa atgcacaatt taaatgaagc tttgtttcaa aaaaagataa aagaaattcg
     9421 cttaaaagca atagcgagta ttatttgtgg gtttttaggt atcattcctt atcttggagt
     9481 tttatttgtt cttgcgagtt ggattttatt ttttattgtg ctttatgatt taaaaatcta
     9541 tggtggtgct aaaaatttgt ttaagaattt ccttattagt gtagggattg gattttttgg
     9601 tattcttgtt aatacaagta ttttatttgc aatgctaaag cctagaactg gcatttttgg
     9661 tgggctttat tttaatcaag ataatatttt atggctattg ctatattttt agtattacat
     9721 tttgctattt tggctttaat ttttcctttt ttgaaagctt tttactatga aattgctaga
     9781 acaacaaagc aaaagtattt cacttatgct tttaatacct tttatttagg gcttcttact
     9841 ttgattatcg gcataggctt ggtgtttttg ctagcaagtt tggttttttg gattttagcg
     9901 tgggtcaaat ttaaagaatt tgatgagcaa gaactttcaa atttagaaga aagattggca
     9961 aaagcacaaa aaaaggtttt tgattttgat ttaaaatgga ttaaaatcac aatggcttca
    10021 tttataattt taaacttgct cgttttaaca ttttcgttta tattagaagt tattagcttt
    10081 gaagatttta ggttttacta cacaaaaaaa actttatttt acacagccat aatcctagct
    10141 ttgcttagtg tgtttttgtt ttgtaaaaag ataaaaaatt acaaactttt tatttatttt
    10201 ttcatatggc aaggtttaag tgtttttggt agtcatcttc tttttattcc tgattttatg
    10261 gtagatcaac aaattgtata tggaagttta aacataatat taagtctatg ctatattatt
    10321 tttgcttttt tattttttaa aattttgatt caaattacaa aggaaaaact tttttatctt
    10381 atttttgcat tttatgtttg catagaaatt ttgataatat taattttctt tatttttatg
    10441 atggttgata actattatat atttacaaaa agtcctataa agatgctcat agataattat
    10501 aaattacttt ttcaagttgt ttatttcgtt tcatttttaa ttgtttggct tatgcttaaa
    10561 ggacaaaaaa atgtaaaaat atgttagaat gatgaaaaaa tactatttta cgtagatgtt
    10621 tattaggata tattcgtatg tcttaaagct ctttatgggg tgttaagtaa ttataatatt
    10681 taaaaattaa aaaatatata gtttatccac atcttctaaa aatttgatca tctctttttt
    10741 cattttttag agctagaaaa catatgagtg aaattgcttt aaagttagtt agagcagttg
    10801 atactaaata ttttgataag aaatttaaat agattgattt tacttaaatt aaagactttt
    10861 tgcctcgtga tacaaaatta agtgatgaat ttttagttaa attgatatta aatatgaaaa
    10921 aattataaat attaatactt tttcaaatta atagtaaata tagagggttt gattttttca
    10981 caaaagattt ggatagaact tgcaaaaaac tttcttcaat atttatactt ttaaattttg
    11041 atgcaaatcc tattcaatat agcattggca aaataaacta aaaagcttaa aatagctata
    11101 ctcaaaagaa ttccaaacca tgcaaaattt cctgttccaa gatttgaaac cgcgttagta
    11161 aggatattaa ctccaccaag tgctttaatg cctttagcac atactccagc ggcgatgatt
    11221 atgcttacga ctgagataaa aatttcagcc atagcctttt aaaatcacca tcatatcttc
    11281 gcctaatttt ctagcatttc tgtgtcttgc aaattcaaca agaaaaacta aagaaattct
    11341 tacaaaattt gctatcacaa catcgagctt gatagtaaaa aaatacgcta taaataaaaa
    11401 tataacaggt aaccaaggaa agagtgtgta aaaagtaggg catttaggat caatgatttg
    11461 cggaaattca acttcatcat ttaaaacacc tttttcttta tctcttttat caatccaagc
    11521 aaaataaaaa ggaatcaaga tggcaataat tacaacatag gtaatcacac tataaatttg
    11581 gtaatttaaa aaaagcccta cgacattatc actttgtcct accatatctg ccatattgat
    11641 tgaatttcca tcttttggat cataatcaag tgcaattaaa gaaagcgcac atacagttgt
    11701 aataggacgg attttaagtg agattaaaac aggatacata catgctaaca aaagcaaaag
    11761 caattcagca tagctagaaa tgacgatttt taaagccatt ccaacaacaa aagttccact
    11821 taaaattaag tatttatttt ttgatttttc ctgagggttt atttgctaaa aaagcaagtt
    11881 ttgccgaagc attgatatgt ttcatgtaag cagtaaagcc tgccacactc atgataataa
    11941 gccctgctcc agaaagctga cttttaaaag ttgctgtgat aaaagataac tatcaagtaa
    12001 aacatttaaa agcttgtatg ttctctactt ggagcttttg gtataggtgt tcctgtgata
    12061 taaaaagcaa aaataagcaa gataatacct gaaagaaaaa atacaaaaat gggattgtat
    12121 tttttgagta tatcataaaa attagcatag ggtctcttga atttacaata aattg
//
LOCUS       DARGBD010000050        11751 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.050, whole genome shotgun sequence.
ACCESSION   DARGBD010000050 DARGBD010000000
VERSION     DARGBD010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11751
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.050"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(40..858)
                     /locus_tag="SFZ04_001109"
     CDS             complement(40..858)
                     /locus_tag="SFZ04_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8065384.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNIVLEFAKKDPRIKIFQNEENLGTFASRNIGVLHSSSDFIMFLDSDDFLTPGACEI
                     AFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVLNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDIILKNFEKVKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILNQNYKDKKKSNEIIKRLSKEFLLDEFHQKLFEVLEREEKSLCMRANKI"
     gene            917..1876
                     /gene="waaF"
                     /locus_tag="SFZ04_001110"
     CDS             917..1876
                     /gene="waaF"
                     /locus_tag="SFZ04_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEG8065385.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR"
     gene            complement(1857..2417)
                     /gene="gmhA"
                     /locus_tag="SFZ04_001111"
     CDS             complement(1857..2417)
                     /gene="gmhA"
                     /locus_tag="SFZ04_001111"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG8065386.1"
                     /translation="MINLVEKEWQEHQKIVQESEILKGQIAKVGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDYNLVVP
                     SDDTARIQEMHILIIHTLCQIIDESF"
     gene            complement(2414..3799)
                     /gene="rfaE1"
                     /locus_tag="SFZ04_001112"
     CDS             complement(2414..3799)
                     /gene="rfaE1"
                     /locus_tag="SFZ04_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HEG8065387.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDESGKFLQENLKGEFLIQKERKTPFKNR
                     IMAHNQQVLRLDEEDTSEILLENELIVLFDEKIKDFKAVVLSDYAKGILTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEVGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANGIEIF
                     KACEFANEAAAVVVSKIGSVSVSFDEIRSFKSMSFEKKIKNKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDENTPLELISFLKPDILVKGADYKDKLVVGSNLVSRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(3792..4745)
                     /gene="rfaD"
                     /locus_tag="SFZ04_001113"
     CDS             complement(3792..4745)
                     /gene="rfaD"
                     /locus_tag="SFZ04_001113"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEG8065388.1"
                     /translation="MRVAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKDKTASMVLQFGHQILAGKNPRLFERSDQIYRDFT
                     YIKDVINANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            complement(4746..5264)
                     /gene="gmhB"
                     /locus_tag="SFZ04_001114"
     CDS             complement(4746..5264)
                     /gene="gmhB"
                     /locus_tag="SFZ04_001114"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HEG8065389.1"
                     /translation="MKTKALFLDRDGVINIDKKYVYKIEDFEFCDGIFELCRYFLAKK
                     YLLFIATNQSGIARGYYKESDFFKLCDYMLKEFTKQGIKIDKIYHCPHLEGCECRKPK
                     AGMLLKAKDEFNLDMKNSIFIGDNLSDMQAGLNANIGTLILVNEEKKEGDFFRQFKNL
                     KEILSFFKEKDI"
     gene            5388..5690
                     /locus_tag="SFZ04_001115"
     CDS             5388..5690
                     /locus_tag="SFZ04_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG8065390.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(5713..5919)
                     /gene="ccoS"
                     /locus_tag="SFZ04_001116"
     CDS             complement(5713..5919)
                     /gene="ccoS"
                     /locus_tag="SFZ04_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEG8065391.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(5916..8273)
                     /locus_tag="SFZ04_001117"
     CDS             complement(5916..8273)
                     /locus_tag="SFZ04_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HEG8065392.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCKSVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFAPKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIVLYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEGLLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            8382..9680
                     /gene="rho"
                     /locus_tag="SFZ04_001118"
     CDS             8382..9680
                     /gene="rho"
                     /locus_tag="SFZ04_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEG8065393.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            9684..11213
                     /locus_tag="SFZ04_001119"
     CDS             9684..11213
                     /locus_tag="SFZ04_001119"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEG8065394.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQAIKQENTTNIIPRITPSPIIPHLEKKTEKNAYEILLDSIYDRDFDLA
                     ECFKQSTNFISFENNTLNINSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKVL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(11210..11434)
                     /locus_tag="SFZ04_001120"
     CDS             complement(11210..11434)
                     /locus_tag="SFZ04_001120"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG8065395.1"
                     /translation="MFKARNLDAQSFHNAKIFWDYFFNLCILWFFAFQVVVAEWFGMW
                     MSKVWKGLPDTTRLVTYMFLALIFISLKND"
     gene            complement(11549..11728)
                     /locus_tag="SFZ04_001121"
     CDS             complement(11549..11728)
                     /locus_tag="SFZ04_001121"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG8065396.1"
                     /translation="MQQKCFCISKMIRFSKIIILLTVVSLAGIVVFGNVTDYNSNFQF
                     VSHVMSMDIKPDLFR"
BASE COUNT         4204 a         2176 c         1477 g         3894 t
ORIGIN      
        1 ttttaaattt ataaataaaa atcataaagt attataaagc taaatcttat ttgctctcat
       61 acataaactc ttttcctctc tctccaaaac ttcaaataat ttctgatgaa attcatcaag
      121 taaaaactct ttggatagtc tttttatgat ttcattactt ttctttttat ctttataatt
      181 ttgatttaaa atttctttat ttttattctc atatcttcca tttggattaa attcataatg
      241 ataaatacaa gttttaaaaa cggctatttt ctcacaaaac ataaaataaa cataacaaaa
      301 aagcacatct tcaccgtaac tcaaacgctc atcgatttta accttttcaa aattttttaa
      361 gatgatatct tttctaaaac acttcgccca aaccgaccag caaaaatgcc tttgtttgct
      421 taagaattct aaaaattcct tttgattcaa aacttcatct tgtttaaaac gataaaattg
      481 tttggttttt accctatgta caaaggcatc aaaacaaagc aaatcaaaac cttttttcat
      541 ctctttaaac gctatttcac aagcaccagg tgtcaaaaaa tcatcactat ctaaaaacat
      601 tataaaatca gaactagaat gcaaaactcc tatatttcta cttgcaaaag tgcctaaatt
      661 ttcttcattt tgaaagattt ttattcttgg atctttttta gcaaattcta aaactatatt
      721 taaactatta tctttacttt tatcatcgat aatcaaaatt tcaatatctt ttaaagtctg
      781 atttatacaa ctttgtaaag cccttgaaat aaaatcacaa gaattaaaaa gcgggattat
      841 gatcgaaagt tgtggcatat ttttcctaaa ttttgttaaa ataataaaaa caattctatc
      901 aaagtttagg aaatttatga aaatttttat acatcttccc acttggctgg gcgatgcagt
      961 gatggcttca cctgctttat acgctataaa agaacatttt aaaaatgccc aatttatcct
     1021 ttatggctct ttggtttcca cagcactttt taaagaattt cctaattcta aaatcatcat
     1081 agaaaataaa caatctcgct ataaacaagc cctatcttta cgcaaagaac ttggtaagat
     1141 cgatcttagc tttgctttta gatctgcgtt ttcttctaag attatcttgc atatccttaa
     1201 aacaaaacaa agatattttt ttgacaaaaa caagcacaaa gaagaacatc aagttttaaa
     1261 atacctttat tttatagaaa actcacttag tataaaagct cattctaaag acttaaagct
     1321 tccctttaag ctaaaacttc aagaccctct tgtcttaaaa aatggtaaaa aaattctagg
     1381 actcaatcct ggcgcaagct ttggaagtgc aaaaagatgg gatgcgagtt attttgctaa
     1441 agtggcttta aatttcagcc aaagtcatga aattttaatc tttggcgcag gaaaatccga
     1501 acaagaactt tgtaatgaaa tttatcaaat tttaaaagaa caaaacataa aagtaaaaaa
     1561 tctttgcaac aaaaccacca tcaaaaccct ttgtcaaaat atcgcttttt gcgatctttt
     1621 catcacaaat gacagtggtc ctatgcacat aagtgcggtt tataaggtaa aaaccgtagc
     1681 tatttttggc cctacgaaat ttactcaaac ttcaccttgg caaaatgaaa acgcaatatt
     1741 agtgcattta gatctagctt gtatgccttg tatgcaaaaa acctgccctt taaaacacca
     1801 caaatgcatg aaagatctaa agcctcaaag ggttatagaa gaggctagaa atttacttaa
     1861 aaactctcat cgatgatctg acaaagtgtg tgtatgatta aaatgtgcat ttcttgaatt
     1921 ctagccgtat catcacttgg cacaacaaga ttataatcac aaagcttatt catcattcca
     1981 ccaccctttc cgctaagccc taaacaaagc atattaagct cttttgcttt ttttaaagct
     2041 tctaaaacat tagggctttt tccgctcgtt gaaataccga ttaaaacatc attttcattt
     2101 cctaaagctt ctacttgtct tgaaaaaaca aactcaaaac catagtcatt tcctatagca
     2161 ctaagcgctg aagtatctgt tgtaagcgct atgcctgcta aagctttgcg ttctttttta
     2221 taacgcccac taagttcagc tgcaaaatgc tgtgcatcag ctgcacttcc accatttccg
     2281 caaattaaaa ttttaccacc ttttttaaga cattcacata aaagctcacc tactttagcg
     2341 atttgtcctt ttaaaatttc actttcttga acgatttttt gatgttcttg ccattctttt
     2401 tctactaaat ttatcatttt ttatccttaa tcttttctat aatcttgctc gtactaaatc
     2461 cttcttcaaa atcgattaat tcaactcttg aaaccaaatt tgaacctaca acaagtttat
     2521 ctttataatc agctccttta accaaaatat caggctttaa aaagcttata agttctaaag
     2581 gtgtgttttc atcaaaaatc actacaaaat ctacaaaata aaaagctgcc aacatacaag
     2641 ctctttgaaa ctctgaattt acaggacgac tctcgccttt gagtcttttc acactcgcat
     2701 ctgagtttaa gcccacaatc aaaacatcgc ctaatctttt agctttctca agatatttta
     2761 tatgtccaaa atgcacgata tcaaaacaac catttgtaaa aacaatcttt ttatcatttt
     2821 gttttaaaag cgttaaaagc tcttctttat ttttgatctt tttctcaaaa ctcatacttt
     2881 taaaacttct aatctcatca aaactcacac tcacactacc tattttactt accacaacgg
     2941 ctgcagcttc attggcaaat tcacaagctt taaaaatttc aatcccattt gccaaacaaa
     3001 aagccaaaac ggcaatcaca ctatcacccg ctcctgttac atcataaact tctaaggctt
     3061 tagcaggtgc gatttttaaa ccctcatcaa aaagcgcaat ccccacttct gaaagagtga
     3121 tgatagaata acgcaaagaa aaatcttctt ttaatttttt aatccctttt tctaaatttt
     3181 caccctctaa attttcaaat ttcaaagctt ctaaagcttc ttttttatta ggcgtgagta
     3241 aggttgcacc gctatattta ctaaaatcac tgcctttagg atcaactaaa acaggaatat
     3301 ttaaagcctt agcctttttt atcacagcct tgcaaacctt aggcgttaaa atacccttag
     3361 cataatcgct taaaaccaca gctttaaaat ctttaatctt ttcatcaaat aaaactataa
     3421 gttcattttc aagcaaaatc tcacttgtat cttcttcatc tagtcttaaa acctgctgat
     3481 tgtgtgccat aatgcgattt ttaaaagggg ttttgcgttc tttttggatc aaaaattctc
     3541 cttttaaatt ttcttgtaaa aatttcccac tctcatcatc acccacaaca ccaagcgcaa
     3601 aaacatcagc ccctaaactt tttaaatttg cataaacatt cgcagccccg cctaatcttt
     3661 tatcttcctt aagagtttta gctaccaaaa caggggcttc aggactgata cgcgaacaat
     3721 cacaccaagt ataattatcc accataaaat cccctataat caaaatttta ggtttttgct
     3781 ggcttaaaaa ctcaagcatt tacttccttt tcaaaaagtc tttttatctc atctaaataa
     3841 tctttaatcc cctcttcaag actaaatttt ggttgataat cccaagtttg atctagtttt
     3901 gcttcagtat ggaattgata agattttaca taaggatttg ggatatattc acaaggcaaa
     3961 tcagtcttta actctttttg caaaatatcg actatatctt gaaaggttct tgctttacca
     4021 ctgcctacat tataaacccc gcattttgaa tcaagggcga ttaaattggc attaataaca
     4081 tctttaatat aagtaaaatc tctataaatt tgatcacttc tttcaaacaa gcgtggattt
     4141 tttcctgcta aaatttgatg gccaaattgt aaaaccatag aagcggtttt gtctttataa
     4201 aattcgcctt ttccataaac attaaaatat ctaagtccta ccaaatgagc tttatcgtaa
     4261 tattttttcg ctaacttatc catcatcaat tttgaaaaag cataaggatt ttttggttct
     4321 tcatccttac ctacagtttg tggacttttt gcatcaccat aaaccgaagc tgaacttgca
     4381 taaataagct ttgcattaag atctatgcta agttctataa aatctttaaa agtatttaaa
     4441 ttggtttgca aaaccttagt ttgatcaaaa accgtagtgt ctgaaattgc tgcttgatga
     4501 aaaataatct ctggcttaaa atcttcaatc ttttttaaaa ctttttcatc gttaatatcg
     4561 cctgcaaaaa gttctccatc aaattcaagt aaatttttaa aatgtccaaa actttgtaaa
     4621 tttccatttt caaaagtcgc actgctacgc attttatcaa tgattaaaat ttcatgtttt
     4681 tcttgcaaat ttaaagccag ttgcgaacct ataaatcctg caccacctgt gattgctact
     4741 ctcatttaaa tgtccttttc tttaaaaaaa ctcaaaattt cttttaaatt tttaaattgt
     4801 ctaaaaaaat cgccttcttt tttttcttca tttaccaaaa tcaaagtgcc aatattagca
     4861 tttaaccctg cttgcatatc gcttagatta tctccgataa aaatagaatt tttcatatct
     4921 aaattaaact catcttttgc ttttaaaagc attcctgctt taggtttgcg acattcacaa
     4981 ccttctaaat gcggacaatg ataaatttta tcaattttta taccttgttt agtaaattct
     5041 ttaagcatat aatcacaaag cttaaaaaaa tcactttcct tataatatcc tcttgcaatg
     5101 cctgattgat ttgtcgctat aaaaagcaaa tattttttag ctaaaaaata tctacaaagt
     5161 tcaaaaattc catcacaaaa ttcaaaatct tctattttat agacatattt tttatctata
     5221 ttaatcacac cgtctctatc taaaaataat gcttttgttt tcataaaaaa cattataata
     5281 tagctttttt gaaaagaaaa taaacattat ctttattttc ttaagatttt tataaaaata
     5341 aagatatata atatctggca atctaatttt tactgaggag aaatcaaatg aaaaaattat
     5401 tagtagtttc tgctttggca tgtcttggtg tttctgcttt tgctgcagat ggtgctacac
     5461 tttttaaaaa atgtgcagta tgccatggtg caaatgctga caaagtttac ttaaacaaag
     5521 ttccagcttt aaaaactctt tcttctgctg aaagacttca atacatgaaa gaatattcag
     5581 aaggcaaaag aaatgcttat ggtcaaggtg cgatcatgaa acttaacctt aaaggtttaa
     5641 ctgaagaaga ttttaaagct attgaagctc atattgaaac tttaaaataa tttctaaaaa
     5701 aggctttcct ttttaagaaa gccttttttt atccaaagct tcttttttac gcctttctaa
     5761 ttctatagca tcacgcaaag aatcctcatc atcatttaaa gtagtaaatt tataatcatc
     5821 atcaaattgc ttatttttaa tcccccaaag caaagttgcc aaaatgataa aaaacgctaa
     5881 gatagaaact cctatcatca tcatgattat actattcatt ctttaatcct taaagcattt
     5941 aaaacgacta ttatactact aaaagacata gaaatagcag caaataaagg atttatcata
     6001 cccaaaaaag ccaaaggtat ggtgcaagca ttataaaaca aagaaaaagc aagattttgc
     6061 ttgataattt taaaggtgtt tttagataat ttgatggctt tttttaaaga aagcaagtca
     6121 tttttcaaaa gcaaaacatc actactttct atagctagat cacttccttc tcttaaagtc
     6181 attgaaacac ttgcgtattt taaagctagt gcatcattta ccccatcacc tacaaataaa
     6241 actttgtaat ttttacttaa attttctata gttttcatct tatcttcagg caaacaagaa
     6301 gcttgataat tttgaatttc taacttttta gcgatttttt ccactgcttt ttgatgatcg
     6361 ccactgagta tcattaattc tttcttttct tttttaagat aagcgataag ctcttttgca
     6421 ccttctctta aaacactatc aaactcaaaa aaagctaaaa ttttaccttc cttggcaaaa
     6481 ataaaatgcg tattatcaaa ttctttagcc acaataccct tttcttgcaa aaatttagaa
     6541 cttccgccta aaagcaaccc ttcatttaac tcagcactta aacctttagc ttgaatactc
     6601 gaatgctttt taaaatccaa atttaaatcc ttagctcctt tttgctttaa atataacaca
     6661 atattttgag agataggatg tttagaaagt tttacaaaat tataaagctc gtttaaatca
     6721 agcgctttat ctaaaaaaac ctctttaagt tcaagctcta ttttggttaa aatacccgtt
     6781 ttatcaaata ccacacaatc acatttgctt aaatcttcta tcacgctaga acttttaaat
     6841 aaaatatgct tttttaaagc cctacctaaa gccacaagat tgctcactgg cgttgctaaa
     6901 gccaaagcac aaggacaagc gataatcaaa actgcaatcg cattgactaa agaaatttcg
     6961 aaactctctt ctttataaaa aaaccaaaaa gcaaaacaaa taaaagcgat caataaaacc
     7021 gttctagaaa aataagccaa aagactattg accaaacttt caagttttgc ttttttagaa
     7081 cttgcaagtt ctaaaagctg gataatttga ctgagttttg aatccttgta aagctttgtt
     7141 gcttcatact ccacacttcc atcaagcact atacaagctg aaaaaatttc atcttctttt
     7201 tgtatgagtt ttggggtatt ttctccattt aaagaagaag tatccacact catttcacca
     7261 cttttacaaa tcccatcgat taaaatttta tctccagttt taagcaaaat tctatcccct
     7321 aaacaaacct tttgaacttc tttaggagca aattctttac cattgaaaac taaaacttca
     7381 ttttgtaaaa aatcattaag cccatctatg gtatctaaag cacgcttttt gctaaacatc
     7441 tcaagatatt tacctataaa aacaaagcaa attatcatcg ccacagagtc aaaatacact
     7501 tcccctaccc taaaaaacat ggcccataaa gaataaacat aagccaaact cgctccgcta
     7561 atcaccaata catccatatt taaactatgc atttttaaag ttttaaaagc acttttataa
     7621 aaatgagatc ccgtataaaa aagcacagga gaacaaagga taaattcagc aaaatttaaa
     7681 atatccttag tgtccttatc cataccgcta aaaaatcctg cgtattttgc cactgctatc
     7741 cacatgatat tcatcacaca agctatagcc acaacaagct tagaataaaa ttcccttttt
     7801 agtaaatccg ctttttttga agccttgctc gcatcataag cactcgcttt atagcctatg
     7861 ctttcaataa gtcttaaaat ttgcaccaaa gaaatgcttt gctcatcaaa aacaatgcgt
     7921 gctttatggt ttaaatgatt aatatcaagt tctaaaattc cttcttgttt ggttaaaatt
     7981 ttctcattaa gccacacaca agctgcacat tctataccgt gtatcatgag ataaatttca
     8041 ctaaatcctt ctttggtttt agtgataaac tcatcataat ttttcatttc attttgaaaa
     8101 tttacagggc ttaaagtttg atttccaagc ttttcataaa actcatctaa tccactttca
     8161 tgtaaaattt cccaaacgct cttacaacct ttacaacaaa aaaatttacc cttatactct
     8221 atcatttggg cttgtttata atcaagtttg caatgttcac atttcataat cattctttaa
     8281 aaaaatattt tttataatta taaacaaatt tgacaaaaag tgcatttttt tattaaaatc
     8341 acattttaca aaaattattc tgctaaatct tacgaggact tatggaaaaa gaaaaaaaac
     8401 aacatcaaag aacccacgtt ccagtggaag gttataaaat cgaagaatta aaattattag
     8461 atttagaaaa tctagttaaa atcgctaatg aatgtgaaat cgaaaaccca agagaatttc
     8521 gccgccaaga acttattttt gaaattttaa aagcacaaac aaaaaaaggc ggttttatac
     8581 tttttacagg gattttagaa atttcttccg aaggttatgg ctttttaaga ggtatggact
     8641 ctaatcttag cgatagtgtt aatgacgctt atgtttcaaa ttcacaaatt aaaaaatttg
     8701 ctctgcgtgt aggcgatatc gttacaggac aagttagaga accaaaagat caagaaaaat
     8761 actacgctct tttaaaaatc gaagcgatca attatctgcc tttgcaagaa gccaaagaaa
     8821 gacctttgtt tgataactta acccctattt ttccaacaga aaaaatcaaa ctcgaatacg
     8881 atgcaatgaa gcttacaggt cgtgttttgg atctttttac tcctatagga aaaggacaac
     8941 gcgggcttat cgttgctcca ccacgcacag gtaaaacaga gcttatgaaa gaacttgcta
     9001 ctgctattgc aaaaaaccac ccagaaatgc atttaatcgt acttttagtc gatgaaaggc
     9061 ctgaagaagt taccgatatg caaagatgtg taaaaggcga agtttttagt tctacttttg
     9121 atttacctgc ttataatcat gtgcgtgtag ccgaactcgt gatagaaaaa gccaaaagaa
     9181 tggtagaaac aggcaaagat gttatcatct tacttgatag tatcacaaga ctggcacgtg
     9241 cttataacac cgcaactcca agcagtggaa aagtcctaag cggcggagtg gatgctaatg
     9301 ccctacacaa gccaaaacgc ttctttggtg cagctagaaa tatagaaaat ggaggctctt
     9361 taaccatagt tgctacagct ttaattgata caggttcaag aatggatgat gtgatttttg
     9421 aagaatttaa aggcacagga aatagcgaaa tagttcttga tagaaatatc gccgatagaa
     9481 gaatttatcc tgcgattaat atcatcaaat caggaacaag aaaagaagaa ttgctccaag
     9541 gcgtagcaaa tcttcaaaaa atttgggcaa tccgttcagc gatttctcaa atggatgatg
     9601 ttgaagcgtt gaaattttta tattctaaaa tgcttaaaac caaagacaat gtagaacttt
     9661 tatctataat gaacgagtag aaaatgcttc aagctttagc gattaaatac agaccaaaaa
     9721 cctttgatga actcatagga caaaagacag ttagcgtaag tttaaaatac gccctaaatc
     9781 ataatcgctt agctcatgct tatctttttt caggacttag aggaagtgga aaaacttcaa
     9841 gtgctagaat tttttctcgt gctttagttt gcgaacaagg accaagtgat actccatgtg
     9901 gcacttgcaa acactgtctt gcagcacttg aaggcaaaca catagacatt atagaaatgg
     9961 atgctgcaag caaccgtggg cttgaagata tacaagcctt aattgaacaa accaaataca
    10021 ccccttctat ggcaagattt aaaattttca tcattgatga agtacatatg cttaccccac
    10081 aggctgcaaa tgcactttta aaaaccttag aagaaccccc aagttatgtt aaatttatac
    10141 ttgcaaccac tgatccttta aaactcccag ctaccgtgct ttcaagaacg caacattttc
    10201 gctttaaaca aattccgcag agtgaaattt taaatcatct taaagaaatt ttacttaaag
    10261 aaaatgttaa atttgaagaa gaagctttaa aatttatagc aagaagcggc aatggatctt
    10321 taagagatac tttaaccttg cttgaccaag ctattatttt ttgtcaaaat gaaatcagta
    10381 ttagtaaaat tacagatatg ttaggctttt tagatcctca aaaaatcaaa gccttttatc
    10441 aggctatctt aacaaaagac aaggaaaaag tttttgcgta tttagaggaa ttacaagatt
    10501 atgaagcctc aagcgtgatt gatgaaatgc ttttttattt aaaagaaagt ttttttgcaa
    10561 aaagtacaga attttctact ttaatttatg aaagattttt ccgtatttta tcaaaagcta
    10621 agaatatgct ttgcgatgat gatggcttta cgctttgtgt tatggctttt atgatgatgg
    10681 aagcaagtca tttaaaagaa attgacgcac aaatccaagc aatcaaacaa gaaaatacaa
    10741 caaatattat acctaggatc acaccttctc ctatcatacc tcatcttgag aaaaaaacag
    10801 aaaaaaatgc ttatgaaatc ttacttgata gtatttatga tagggatttt gatcttgcag
    10861 aatgctttaa acaaagtaca aattttatta gttttgaaaa caatacttta aatataaact
    10921 caaacgcaca aggacaaaat cgcgatacac tcaataaagg ttttaaactc atacaagaac
    10981 tttttaaggc taaatttggg gaaaatgcta aaattaatgt gcaaaaagta ctaacaattg
    11041 atgaaaataa gcttcaatcc ttaactcaag aattaccaaa caatgaaaat aaaaacatag
    11101 atattcaaag ttctattaat atgcttaaag aaggggccaa aaaatttgac ccacaagaag
    11161 atcttaaaga ggctcttaaa gattgttttg gagagcctag tatagaaaat taatcatttt
    11221 taagagagat gaaaatcaaa gccaaaaaca tataagttac caatcttgta gtatcaggta
    11281 aacctttcca aaccttactc atccacattc caaaccattc tgcaacaact acttggaagg
    11341 caaaaaacca taaaatacac aagttaaaga aataatccca aaaaatctta gcattatgaa
    11401 agctttgagc atctaaattt ctagctttaa acatatcata agcacctttt ttagagctgt
    11461 taaggcaata aaagtttcaa aaagaataat tgctatatag cctatatgat aaatcacggg
    11521 agaagtaata gccatataaa ctacagcatt acctaaataa atcaggcttt atatccatac
    11581 tcatcacatg cgaaacaaat tggaaattag aattgtaatc tgtcacattt ccaaaaacca
    11641 ctatacctgc taacgataca acggtaagca aaataataat ttttgaaaat ctaatcattt
    11701 tgcttatgca aaaacatttt tgttgcattt atactctttt aataatatat t
//
LOCUS       DARGBD010000051        11482 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.051, whole genome shotgun sequence.
ACCESSION   DARGBD010000051 DARGBD010000000
VERSION     DARGBD010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11482
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.051"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            51..1536
                     /locus_tag="SFZ04_001122"
                     /pseudo
     CDS             51..1536
                     /locus_tag="SFZ04_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004275251.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
     gene            1735..3288
                     /locus_tag="SFZ04_001123"
     CDS             1735..3288
                     /locus_tag="SFZ04_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HEG8065397.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSAFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDANTLRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            3304..5094
                     /locus_tag="SFZ04_001124"
     CDS             3304..5094
                     /locus_tag="SFZ04_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEG8065398.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDVKASEFRAQSKYYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(5215..7020)
                     /gene="mrdA"
                     /locus_tag="SFZ04_001125"
     CDS             complement(5215..7020)
                     /gene="mrdA"
                     /locus_tag="SFZ04_001125"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG8065399.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLEHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIDLGYFK"
     gene            complement(7021..7515)
                     /locus_tag="SFZ04_001126"
     CDS             complement(7021..7515)
                     /locus_tag="SFZ04_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065400.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILFYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(7512..8108)
                     /locus_tag="SFZ04_001127"
     CDS             complement(7512..8108)
                     /locus_tag="SFZ04_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEG8065401.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVACKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGFDSLEDIIINQTLGLDK"
     gene            complement(8105..8566)
                     /locus_tag="SFZ04_001128"
     CDS             complement(8105..8566)
                     /locus_tag="SFZ04_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HEG8065402.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(8548..9063)
                     /locus_tag="SFZ04_001129"
     CDS             complement(8548..9063)
                     /locus_tag="SFZ04_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065403.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNTSTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGANNVKIISQEVEYEPKNKVLYTNTDFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(9054..9542)
                     /locus_tag="SFZ04_001130"
     CDS             complement(9054..9542)
                     /locus_tag="SFZ04_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEG8065404.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(9548..10375)
                     /locus_tag="SFZ04_001131"
     CDS             complement(9548..10375)
                     /locus_tag="SFZ04_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEG8065405.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYKGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAVSGAFAGAFVVRE"
     gene            complement(10335..11453)
                     /locus_tag="SFZ04_001132"
     CDS             complement(10335..11453)
                     /locus_tag="SFZ04_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEG8065406.1"
                     /translation="MKKILLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
BASE COUNT         3994 a         1856 c         1556 g         4076 t
ORIGIN      
        1 attactatta gttccaatat tttaagcata aaaaagaaag gtattgggaa gtgactaaac
       61 aagaaataca aaaactcgat acaaatttac taggtcatcc caagccttta ttctctctat
      121 caatggtaga actttgggaa agatttgctt tttatggcat acgatcttta cttgtgcttt
      181 tcatggcaac aaccataagc aaaggtggac ttggaataag cactgaatac gcctcggcaa
      241 tttatggcat ttttgcagga tgcttgtatt tagcagcact tcctggaggc tggattactg
      301 ataattattt agggcaaaaa aaggctttat ttttaggttc ttttattata gctttaggac
      361 atattagcat agccttatct attttaagca cacctatatt tttcctagga cttcttttat
      421 cgttattggt actggatttt ttaaaactag cgcttctgta acagttggaa tgttgtataa
      481 acaaaatgat acaagatgtg atactggcta tacgattttt tatataggaa ttaacattgg
      541 agcattcatt gctcctctta tatgtggttt tgttcaagca aaatggaatt atcatttagg
      601 atttggctag gaggtttagg tatgctaatc tctttgctta ttttatattt taaagctgcc
      661 cctgagcttg aagaatttca taaaaattgc accttaaagc aaaactggga acaaccattt
      721 aaaaaagtaa aaaatttaac tcttatacta agtataagct tgttaagtat tattggattt
      781 tttctaatgt ttattaatct tgtaaatatt aatcccatat aatactatca aaaaaacttc
      841 taattgtaat tttactatgc ttggtaattt atttcatata tctttttgtt tttaaagcct
      901 taaataaaag agagaaacaa caattaataa ttttaattgt tttattcttt gcagccactt
      961 tttttggagt acttttaaac aaaaacccta ccgcttataa tctttttgcg caagatttta
     1021 caaatagaaa tatttttgat tggaaaattc caacaaactg gtttcaatct tttaatccaa
     1081 tttttatcat catacttgct cctatagcaa gttatatttg gatattttta gagaaaaaaa
     1141 tatatatttt tcttccattg gaaaatttac tttaggaata ttatttgccg gtattggctt
     1201 tatgatgatg acctttgctt cacaaaatct aataaacaac aatggtttac caatatccat
     1261 ggcttggatt atcataagta tattcttttt aacacttggg gaattatgcg tgtctcctat
     1321 tggactctct ataatggcta aggttgcccc tgatttaatc aaaaatcaaa tcatgggact
     1381 ttggttgcaa gtgcgcttgg aaattttgtt gcaggactta taggaggaaa tgtcaatatt
     1441 aaaaacatcg atcaacttcc taatattttt gaacaatgca tgtggatgct ttttgttgta
     1501 gcacttttgc tttttattgc taaaaaacca tcttaacaaa aaaaataagc aattatctaa
     1561 ctaaacttaa aatacaaaat acaccaaagt tgaaaattga tcttaatatt tcttttttta
     1621 tatttgcaaa aaagtaacat tatgatataa atcatttaaa aatattacaa agttatacat
     1681 attttttaat ttcttgtcta taatttataa ataaaaatac acaaaggata taaattgagt
     1741 aaaaatgtaa aaaatttaga tacttcattt tttggacatc caaaaccact tttatctctt
     1801 tcacttactg agctttggga aagattttct ttttacggaa ttcgtccctt gctttacctt
     1861 tttatgatag caagttttga aaaaagtgga atgaacttaa aacctgaaga agcaagtgca
     1921 attatgggaa tttttgcaag ttgtttatat cttgctgctt tgccaggtgg atggcttgcg
     1981 gacaattact taggacaaaa aagagcaatt ttactaggtg ctttaactat agcatttgga
     2041 catttgtgca tagccttttc ttattttaac aataaaatga tttttgttgg tatggttttt
     2101 ttggttatag gtacaggact ttttaaaact tgtgcttctg taatggttgg aatgctttat
     2161 aaaaaaaatg atgcaaggcg tgactctggt tttactcttt tttatatgtg ctttaatttt
     2221 ggtgcttttg tagctccttt aatttgcggc tttttacaaa aagaatacgg atggcatttt
     2281 ggttttggtg caggtgggat tggtatgctt ttagcggtaa ttattttcta cctaaaaact
     2341 atgcctgatt taaaagaatt tgatgaaaaa gttggcatag actctacttg ggatagacca
     2401 agcaaaaaaa gcaaaaacgc attttacatc atcattgtat caggtattgt tttgcttgga
     2461 gcaatatttt taatccttgg tggttttata aaattagatg cacaagttat taataaaaat
     2521 attattctaa ctatcttagc ttgtgctgga atttattttt tatatctttt cgcttttact
     2581 tctttaaaaa tagaagaaaa aagaaattta attattttta ttgttttatt tttagcggct
     2641 gcgttatttt ggtcagtata tgagcaacaa tacacttctt ttaatttttt tgcagaaaaa
     2701 ttaacagata aaaccatatt aaattatgaa attcctacaa tatggtttca atctcttgga
     2761 ggtttatttg ttatactttt tgcacctttt agtgctttta tatggactat atgtgccaaa
     2821 aataataaag aaatttcatc tattattaaa tttgcattag gacttttggg tgcagctttg
     2881 gcatttttaa taatggcttt agcttcaaat catgcaatta gtttaaatgg cgatgctaat
     2941 acattaagag aaaatttaga aaattcatca caaattattt tagtttcacc ttggtggctt
     3001 gtcagtagct ttttgcttat ggttttagga gagctttgcc tttcccctgt gggactttct
     3061 ataatgacaa aaattgcacc taatttaatt aaatctcaag tcatgggact ttggtttgta
     3121 gcaagtgcat taggcaatgc tttagctgga ttcataggtg gtaaagcaag tgaagaaaat
     3181 atagcttatt tgccaaattt attttaccaa tgtatgtgga tattacttgg tgctgttata
     3241 attttactta tactcaaaaa acctatcaat aaaatactaa aaaattaata ttaaggagaa
     3301 aatatgagta tttacaaaca aagagtatta gaacttagaa gattaatgaa agaaaataat
     3361 attgacgcct atctcatctt aagcgcggat ccgcatttga gcgaatattt accagaatat
     3421 tacaaaaaca gagtctttat cagtggcttt aagggttctg ttggaacagt tcttatcaca
     3481 caagaagagg gctttttgtg ggtagatgga agatattggc ttcaagcaca aaaggaatta
     3541 gaaggtagtg gcatactttt acaaaagcaa gatgctaaaa atacttttac caaatggttg
     3601 gaaaaaaatt taagcgaaga tcaaatttta ggcatcgatt ttgcactttt acctttatct
     3661 ttgcaaaaag atttaaagat taattgcaag gcaaatttaa aacatataga tttgataagt
     3721 ccgctttgga aagatcgtcc cactttacca caagaaaaaa tttatgaaca cgaactagaa
     3781 tactgctctt actcaagaaa agaaaaatta gcattagtgc gtcaaaaaat gaaaaattta
     3841 aatgttacct ctcatttaat ctccagcctt gatgatatag cttggcttac aaatttaaga
     3901 gggaatgatg taaattataa tcctgtattt ttaagtcatt tgctaatctt ggaagacaaa
     3961 gccttgcttt ttgttgatca gaaaaaagta aattcagaac ttgaaaaaaa attaaattta
     4021 gatgggtttt ggcttaaaaa ttatgatgaa atcatcatgg agcttgaaaa acttgcaaat
     4081 acaaatttgc ttattgaacc ttcaaaaatg accgctttac tcataaattc tttagataaa
     4141 agcgtaaaaa tcattcaaga aattaatcca agcactcact taaaagcagc taaaaataca
     4201 aaagaaatag cgcatataca agatgctatg atagaagatg gagtggcttt atgtaaattt
     4261 tttgcctggc ttgaagaagc gatagaaaat aaagaactaa taagcgaatt agacatagat
     4321 gttaaagcaa gcgaatttag agcacaaagc aagtactaca taagtgatag ttttgccact
     4381 atagcaggtt ttaacgaaaa cgcagcatat ccacattata aagccacaaa agagagtttt
     4441 gcttatctta aaaaagatgg acttttactt attgattctg gtggacaata taaaaacggc
     4501 acaacagata ttacacgcgt tgtaccaata ggaaaggcta atgcagaaca aattcatgac
     4561 tataccttgg ttttaaaagc acatattgcc atttccagtg caatttttcc aaaagatata
     4621 gctatgccct tacttgatgc aatcacacgc gcacctttat ggaaagaaca aattgactat
     4681 atacacggca caggacatgg cgtgggatat tttttaaatg tccatgaagg tccacaagtt
     4741 ttatcttatc tatcccctgt gcttgaaaaa acaaaagcca aagaaggtat gctaacctcc
     4801 atagaaccag gtatttataa agtaggtaaa tggggtataa gacttgaaaa tttagttatt
     4861 cataccaaag tagaaaatcc taaaaataaa gattttggag agtttttata ctttaaacct
     4921 gttactcttt gtccttttga aatatcttgt attgatacaa aaatgttaga tgaaaaagaa
     4981 aaagagtggt taaacaatta ccacaaagaa gtatttgaaa aactttctcc taagctaggt
     5041 gattatccaa aagctctagt ttggcttgaa aaaagaacaa aagccatctt ttaagatact
     5101 tttgttaata tagataaatt ttccttgtat taaacttata atttatttaa tacaaggttt
     5161 ttaaaccaat tgctaaaaaa gttttttttg aaaaactcaa tttacaacta aaaattattt
     5221 aaaatatcca agatcaatca ttttttgata aattttagct acagttgccc ctgaagtaat
     5281 atttctccca ccatgctcca aaagaacggt aactacatat tttggcttag aataaggagc
     5341 ataagaagta agccacgcat gagatctagt ataatactca aattgttttt catcgaccct
     5401 atttttatct gtttgtgaaa atcccacaac ctgagcggtt cctgtttttg ctgcaacttt
     5461 cacatcaaga ttatgcaaat aacgataaga ggttcctcct tgctcattgg caacggcata
     5521 cattgcatct cttatataag gcaattgact cttttcaaat aaagtaaaaa tttctttttt
     5581 attttcatcc atttgatttt ctatagttgt attattattt tctatgcttt ttaaaaaatg
     5641 aggtataacc tctccacctt ttgcgatttg agccgtatat ctagcaattt gcataggtgt
     5701 tgcaagaaaa ttaccttgac ctatggctgt atttaaagta tcaccttgaa accaagattg
     5761 tctatatctt tgcatcttcc attctttgct tggtaaagtt cctacaaatt cactaggtaa
     5821 atctacccct gttttcgctc caaagccaat gcgagataaa gtttcactta tttgatcgat
     5881 tccaacttgc aaactgccat tataaaaata aacatcacaa ctatatttta tcgcatgttt
     5941 taaatccaca ggtccatggc ctgatcgatt ccaacatcta aaaaacctgc ctccaagctc
     6001 aatgcttcca ttgcaaacat attgagtcga cgggctaata tttttagaat ttaaaaaaga
     6061 aagccctact cccattttta caacagaacc tggaggataa tatccattta taagtttatt
     6121 tgtaaaagga tgttcaagac tatttgaaag ctcatcccaa tccttaaaag aaatccctgt
     6181 tacaaaagga ttaagatcat attcagggaa actccctgca gctaaaatag atccatcatt
     6241 tacattcata attatagcag ctccagcatt cccttcaaac aatgaagtta aataagactg
     6301 aagctctata tctatcgtaa gttctatatc attagacata gcaggagtgt aagaaagctg
     6361 ttctacttct tgatttaagg cattaacctt ataaacccta gttccttttt ctccttgtaa
     6421 aatatcatta taatagcgtt ctataccgct ttttcccgta tagttagaaa gttttgctat
     6481 ttcattttct tgaacatctt gcaaatttgc cttacctaca tacccaataa tatgcgaagc
     6541 caattttcca aaaggatatt ttctttttac aacaggatct atttttattg ttttattaag
     6601 atttaactct gaataatgcg gaataatctc atcgtagggt ataaaatcta caactttaat
     6661 aaaatcttga ttatagtaag aatcatttct cttataaatt tctgctaatt tactagcatt
     6721 taaatcggga aataaatttg taagttcaga taattcttta tctaaaattc ctttatttga
     6781 ctttttaata cttaaataag gtttaataga aatactaaaa cccaaatcat taatagccaa
     6841 taaagttcca tttctatctg taatttgacc cctaacaggt ggtaaaaatt cagtttttat
     6901 ggcattttgt ttagcaagct cttcataata tacatttgat tttatactca aataatacac
     6961 acgacttaat aaaaatataa aaaacaatag tataaatcca acaactagac gcattctcat
     7021 ttaaatttta cctttaaaaa acacataagc taaacaacat tctataaaaa ctgaaacaat
     7081 atacgcccat cctaaaattt taattttttc atctccaata taaaacaata tcatatccaa
     7141 aaacaaaata atgccgtaag cacaaagcac aaaaacaaca gggataaatt taccaatttt
     7201 taaatttgtc ttaatccaat ctgcacaaag ataataaaaa ataaaaaatg ccaaccaaga
     7261 tgaaaaaata aaaaaattat aagttatatc agtaaaaaat aaaaaaaata aagaaaaata
     7321 ccatctaaaa tcaagctttg aaaaagttct ctctctctct tctaataagc aaaacatata
     7381 acagaaaaaa atcccataaa gtaacggggt atatacaaaa gtcgaaccaa gaatctgata
     7441 aattagaaaa aaaaatccta aaaagacata agctccatta aattttgctt tataagcact
     7501 taaatttctt ctcatttatc aagacctaaa gtttgattga taataatatc ttctaaagaa
     7561 tcaaagccaa atttattcaa atttgaaact aaaatagagt ctttaaattc attttttaac
     7621 ttagcttttt cactttgatt taatttatcg catttggtaa aaacttttaa aattttttga
     7681 tcaggtcgta aaaatctttt caaatagtca tttagattta catcgatctc taaatgagta
     7741 tgtcttgagt cgattaaatg tataaataac tttatcgagg ttcttaattt taaaaattca
     7801 tctaagtttt gattccatat ttcttttaaa tttttagaaa cctttgcata accaaaccct
     7861 ggtaaatcga taaaattgat attaaatttt tcttcatttc ttttgcaagc tacttcgaaa
     7921 aaatttataa gctgagtttt tccaggagtt gccgaacttt tggctaaatt tttttgttta
     7981 cacaaagaat tgattaaaga actttttccg acattagaac gccccaaaaa tgctacttca
     8041 ctaaaatttg agctcaaatt ctcatcaaat ttcactaaag aagtgataaa tttagcacta
     8101 attatcattt gtctttaaga tcaaacacaa aacgagcagg tttttgatcc ttactctcca
     8161 ctcgataaat attagctttt ctatcgacta ttattttatc accaaaaagt ttttgattgc
     8221 ttccaagctc atttatataa gcatgaccat taatctcgta agtatcttta ataacattat
     8281 aaataaattt atctccacta cctttataag ttttaccttt taaaacaatc ttaaacctag
     8341 cattttgcat tgcttcataa cgaataggtt tgcgattttt atccgtataa ataatcaatt
     8401 tttcagaatt taaaatatca tcacctctaa ttacttctac atttccacta agaatacttt
     8461 cacccttatt ttcatctgag taaaaattta aagcttttac ttcaatttga gttgcccaag
     8521 ttacacttac acaagctaac aataaaatta tttgtcttgc aaccacgcat ttactccttg
     8581 gatatttaaa attttgtttt ttacatcata gtttaaagta tttccgttaa taatacttcc
     8641 attaattaga gctttaaaat cagtatttgt atatagaact ttattcttag gttcgtattc
     8701 tacctcttgg gaaataattt tgacattatt agcacctata taagtaacat ttccttcaaa
     8761 taaaaccttg ctcatatctt tattaaaaaa ttctaaacga ttcgcactaa gattaaaatc
     8821 taaatttaaa gtaataaaat cattaaattc atctctatct gcatatctca cccaagaatt
     8881 tgccttataa tatgccttaa ttgtactagt attactctca taagctttca aatttttagc
     8941 ctcaatattt ttaaaattta aagcattagt ttgcaaattc aaagaatatg gatcttgcaa
     9001 acttaaaatc gtaaaagtaa ttgtaaaaag agcaattaaa attccaaaaa tttttatagc
     9061 caaagcttat tccattcttc ttctagatga tttttttcta ctaaaatttc tatcatctgt
     9121 gctacagcag ccttaccacc ttttttgcta agcactatgt ctacatttaa atctttatga
     9181 ccatcttttg gcttaaaact aagtcctaca ctttcaagca aagccttatc gttaaaataa
     9241 tccccaatag ccgcacactg agaaaaatct aaattaagtt tttgtaaaat ttcttttgca
     9301 caagctaact tatccttgat gccttgatat aaaatttcta tttttaaatc tttagctctt
     9361 ttttcaacac aaggacaatt tctacctgta ataatagcaa tttttttacc aagctttagc
     9421 caagcctcga tagctgctcc atcttttaca tcaaattctt taataaattc tccattagaa
     9481 gtataaataa tttttccatc agttaaacag ccatctacat ccaaaaaaat caattctgtc
     9541 ataatttcta ctctcttaca acaaatgcac ctgcaaatgc accacttaca gcaaaatccc
     9601 ttgcttcatc ttcacttcta aagcctgtta agaaaacgcg atttaaccca tccactgaac
     9661 ttgtgcgtat agtagagcta taagttctat aagttttata tcttgctgct atcgtttgtg
     9721 ctccagctgg gtttttaaag gctccaattt gaaccatgaa atttccacct ttataaattt
     9781 gtccattatt tgcaatctct ccactatttc catagtttac attagaatgt acaatattat
     9841 tacccgaatt acttgatcca aaccctataa cctcaagcct tactggagct gttcctgaag
     9901 caatcatatc aatttgacta gcagctcctt ttgataaatc tataatacga ttatttacaa
     9961 aaggacctct atcattcaca cgaacggtaa cttgacgatt gttatttaga ttggttactt
    10021 ttaagatggt attcataggt aaagttttat gagccgcggt taaagcattt tgattatagg
    10081 tttcgccatt agaggttttc ttgccgtgaa agcctggccc ataccaactc gcaataccat
    10141 cagcagtttc gcctactgct acaacagtag gataataagt tttaccattg atagtataag
    10201 gcttcatcgt tcctttagtc cctgaagaac taggactgct tttaaaatca tttgaaggat
    10261 aatacacttg agcattatcc aagctagaaa aaaaactagt gcctaaacaa ccactaaaaa
    10321 ataaagcccc tagactaacg gctgacaact ttagtgtaat tgtttttatt tgcattttta
    10381 ttctccttga ttggtataat taatttttga ttaatactaa gatgattttt tgctatttta
    10441 ttgaattctc gaatttcatc aacacttata ttataatttt ttgctatttt atataaagag
    10501 tcaccagact taacggtata agttcttgtc ataggtatag ttgtatcaac cttcgcaagt
    10561 ttttctgctt taaaattttt atcaaaaaat gctactttat taagtggtat atacatataa
    10621 taccctttac caggaggcgt aaaattatgt ttaaattgtg gattatattt cttaaaagtt
    10681 gcaagatcca tatttaaatt tttagctatt tcttttaaag atgcagaaga aggcacatca
    10741 acttttgcaa attcattgct taaagcataa ttcattaaag acgcatcttt atctagtaaa
    10801 aaatccctat cattagctaa aaaagcaagc gttaaaatct ttcttataaa atttctagtt
    10861 tctaaagaaa gatatttctt atcagggttc aataaaacac ttaaatcatc acttcctgct
    10921 tgcttgatag cttgtcttag cttgccattt ccgcaattat aagctaaaag tgccaaatac
    10981 catttgccaa attcttcttt taactctttt aaataatttg tagcggcata agttgacttg
    11041 actggatcac gcctttcatc aacataagca tcgattctta aacccaaatt tctagctgtt
    11101 ggttgcataa attgccaaac ccctacagcc ttggcattag aaacgctatg agttttcaag
    11161 cctgattcaa ccatagctag atacaaaatc tcatcaggaa cttcctgctg ggctaaaatt
    11221 tttcttatca taggagtaac ttttgaaaaa ttttgcatgc tatctattaa agtttgagca
    11281 tgttttgatt ttatatcttg ttgagtttgc acaaaaatca aatcactgat aaaacttgga
    11341 ttaatatcta aatttcttaa aacattcatt tgtctttcat aaaattcagg agtattaatt
    11401 tgtgcaaaaa gaaaattaaa acatattaaa aaacacaata aaattttttt cattaataac
    11461 ctttaaaaaa taatttttca ga
//
LOCUS       DARGBD010000052        11391 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.052, whole genome shotgun sequence.
ACCESSION   DARGBD010000052 DARGBD010000000
VERSION     DARGBD010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11391
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.052"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(101..1138)
                     /locus_tag="SFZ04_001133"
     CDS             complement(101..1138)
                     /locus_tag="SFZ04_001133"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HEG8065407.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSD
                     PKKIQEYFLKY"
     gene            complement(1192..2763)
                     /gene="recJ"
                     /locus_tag="SFZ04_001134"
     CDS             complement(1192..2763)
                     /gene="recJ"
                     /locus_tag="SFZ04_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEG8065408.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2750..4381)
                     /locus_tag="SFZ04_001135"
     CDS             complement(2750..4381)
                     /locus_tag="SFZ04_001135"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEG8065409.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4501..5124
                     /locus_tag="SFZ04_001136"
     CDS             4501..5124
                     /locus_tag="SFZ04_001136"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEG8065410.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEGEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFETLPQEHKFIFEHCLHKDIE"
     gene            5244..6629
                     /locus_tag="SFZ04_001137"
     CDS             5244..6629
                     /locus_tag="SFZ04_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG8065411.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLAMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFVLQYLANFPDAEEASNILWYSETKHWFAFVSSVFVTFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     DKQIREIQTFSNIILGLIPSNIITAINKENIIAIVIFSFFIGISAKKISKKEECEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6668..9037)
                     /locus_tag="SFZ04_001138"
     CDS             complement(6668..9037)
                     /locus_tag="SFZ04_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEG8065412.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9053..10381)
                     /locus_tag="SFZ04_001139"
     CDS             complement(9053..10381)
                     /locus_tag="SFZ04_001139"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8065413.1"
                     /translation="MVERYSREIMAKKWDMQAKYDTWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIVRIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAKEVVSYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDVIFKRTFK"
     gene            10459..11355
                     /locus_tag="SFZ04_001140"
     CDS             10459..11355
                     /locus_tag="SFZ04_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG8065414.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNEILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLFYKNHKILGDPLYGLEKKDIEKILDDKMDIEERIKLSGAKRLCLHSYRLKF
                     NYNGENFDIFSKKGMEKILAAF"
BASE COUNT         3786 a         2136 c         1518 g         3951 t
ORIGIN      
        1 atgataataa aaaatacaag atataatata ctattaatag gattgaaagg cttgacttag
       61 ggaagataag ttccctaagt ttagaaatat ttaaaaaatt ttaatatttt aaaaaatact
      121 cttgaatttt tttaggatca cttgtttttg taagtgctaa tataagcaaa actcttgctt
      181 tttgaggatt taaatcttca gcactaataa aacctaattt ttcatctgaa tcactcacag
      241 caacacaacc tgctacaacc cttgaactta caacaacctt aagccctttt tttaaaagct
      301 cttttaaaac atctttttga tttttgtgta tacttcctgc tccacttcct gcaacaacta
      361 tgcccttagt tccatgttca aataaagctt ttgcagcgac accactacca tcatttgaat
      421 agctataaag aatatctact tttggcaaac ttgtgagttt gcttacatca aaaggagcgt
      481 tttttgtgtg agctttagta acattattat agaaaaagac tttaccatct actatataac
      541 ccaaatcccc aaaatcagga gaagagaaag catcaacatt taaactatga gtttttacta
      601 cgcctctagc gcttaaaatt ttatcattta tagctaccat aacaccctta ttcttagctt
      661 ctttattggc aactaatgcc actgcattat aaagattttt cggaccatcc gcacttatag
      721 cagttgatgg acgcatagcg ccaactagaa ctacgggctt atcactttta atggttaaat
      781 ttaaaaaata agcagtttct tccatagtat cagtaccatg agttatcacc acaccgtcta
      841 tcccctcagc aaaaagctta gcaatttttt tagcaagcct taaccaaatt tcatcacaca
      901 tatttgaact atcaatattt gctatttgct cccaactaat atctgctaaa tctctaattt
      961 gcggaactgc tttaattaat acatctatat caatggctcc ggccgtatat cctgttgtag
     1021 caatagtgct atcaatgaag cctgctatcg ttccgcctgt tcctaaaata gcaatccttg
     1081 atttagcttt tttcatacat actcctataa aaagacaaca tataaataat tttttaatct
     1141 cttgtatatt aattttttaa tgttattaat gcaaattata agtaaaaatt tttataaaat
     1201 ctctttaaca acaaactgtg gagttaccat tcccctaaat tcattcttag aaatacttcc
     1261 aagcaaagaa atattttgat tcaattctgg ctctttatca aaattaaaaa ataaagcttc
     1321 tatggtttta ttttccttag ttaaaacaag ctttaagtgt ttttcatctt tacctagaag
     1381 ttttttattt tttacacaaa gattttctaa aacaaaaaaa ggtcgtggat ttttatgtcc
     1441 aaaaggttca aaagattcta aaatttcaag catttcaaaa tcaatttcgc taggttctaa
     1501 gattcctaaa atttcatccg tatccaaaaa ttcactttca gaaatttgcg aacattcttt
     1561 tttgatttta tttttaaatt gttcaaaatt ttcagagttt aaactgattc cagcagcacc
     1621 tttatgacca ccataattgc ttaatataga atttgtctta gaaattaaag ccaaaatatc
     1681 aatcttgcca acacttcttg cactaccttt taagtgttct tcattttgag aaaatacaaa
     1741 agcaggttta ttaaaatgtt tagctaaacg acttgccaca atccctaaaa caccttcatg
     1801 ccaatttaaa cccgatacca caatacaaga atcgttttca tcgatttgat ttaaactatc
     1861 ttcaaaaagc tgtttttctt catctttacg actttcatta aaactaacaa tttgctctag
     1921 atattctaaa gctttattaa aatctttagt gtgtaaaaat tcataagaaa tacttgcatc
     1981 atccattctt ccagcactat ttataagcgg agcaattaaa aatcctatat tatcaagagc
     2041 aaatttatcc ttttgataat aatgcttaat agccctaaaa gcagcccttt tagatttgtt
     2101 aatatgatct atgccacgcc ttactaaagc acgatttaaa tctctaagtt ccatcatatc
     2161 tgcaacaatt gcaatcgcca aaagttctaa aaatttacac atgtcatatt taagcttgca
     2221 cacctctttt aaagccgcta tcaaatacca tgcgacttga gctccacaaa tttcaatttc
     2281 tggaaaatca caatcttttt gctttggatt gataatggca aaagcatcag gtaaaatatc
     2341 ttgaggcata tgatgatcag tgataatcaa atctatattt ttttctttac agagtttggc
     2401 tgcttcaaga gcagctattc cattatctac tgttattatt aaatttacat caagttcgtt
     2461 gatgatctca gcatttaatc catatccatc tttaaaacga ttcggaattc ttataatata
     2521 atcaaaacct atatcatcga aaaattctgc cataataaca caagaaatga ttccatcaac
     2581 atcataatct cctactatag cgactttctc atttttttct acagcttctt tgatgcgatt
     2641 agctgcttta tatgcatcct ttaaacagca tggcaaaggc agatcacaaa gtttggtatg
     2701 caaatctttt tcaaagcgtg aagccaaaat ttttttaatt tcatttttat taattatctt
     2761 catagtttat agctgccttg ataaaactgc aaatcacagg attaacatgc tcaagtcttg
     2821 atgtaaattc tggatgaaac tgcacagcca agaaaaaagg atgacaatta agctcaactg
     2881 cttcaatcaa tcctttgctt tcaccactta caatcaaacc gtgtttttca aaatctgctc
     2941 tatattttgg atttgcttca tagcgatgac gatggcgttc ttttacactc tttacttcat
     3001 tataaacctt agccaaaagg gatttttcct tgatatcaca tttataagcc cctaaacgca
     3061 tagttccacc taaaggagtt tttgcagtac gaatttgttt ttctccattt gtatccataa
     3121 attcatcaat caaataaacc acaggatttt ggcatttttc attaaattca cttgaatttg
     3181 catctttaag ttttaataca tttctagcaa attccaccaa agcaagctgc atacctaaac
     3241 aaattcctaa aaaaggaatt ttattttctc ttgcgtattg aatggctttt atcttacctt
     3301 ctacaccacg atatccaaat cccccagcaa ccaaaattcc actcacatct ttaaatactt
     3361 cagaactttc catattttca agtttttcac tatctaccca ttttaactcc actttagtat
     3421 ctagggctgc acctgcgtgt ataatagctt cagtaaggct tttataactt tcttttaaat
     3481 ccacatattt gcctacaaaa gcgattttaa cttcattgct tggagctata actcttttta
     3541 ccaaagagtc ccaattttcc atattaggtt ttaaattttt caaatccaaa atttcagcaa
     3601 tagggcttaa aatatcttgc tttaaaaaat taagtggaat ttgataaata ctagccgcat
     3661 caacactttc tatcacgcaa tttttttcca ccccgcaaga aatagcaatt ttatctttta
     3721 aatctctatc aagagctttt tcactacgac aaataatcat atcaggacta atgcctatgc
     3781 gccttaactc gcctacacta tgttgagttg gctttgtttt taattcccct gcagccttaa
     3841 taaaaggtac tagagtaaga tgaatattca tagcattatt tttacccact tccaaacgca
     3901 aagcacgaat agcttctaaa aaaggcaagc cttctatatc cccaacagtt ccgcctattt
     3961 caacgataag tatatctttg ccttctcctg cttttttaat gcgatctttg atttctccta
     4021 ctatatgagg gataacttga atggttttgc caagatattc tccacgcctt tctttttcaa
     4081 tcacactttg ataaacccgt cctgtagtga agttattatc ttgagataaa ctctcatcca
     4141 aaaaacgctc ataatgcccc aaatcaagat ccgtttctgc tccatcatca gttacaaaaa
     4201 cctctccatg ctcaaaagga ctcatagtgc ctggatcaac attgatataa ggatcagctt
     4261 ttaaaatact cactttaagc cctgaatttt ttaaaagtgt tgcgatagaa gcagcggcta
     4321 tccctttacc caaagaactt aaaactccac ctgttacaaa aatatatttt gtttgtttca
     4381 ttgataataa gccttatttt tttatctaat tatagcttga taaaactttt tatttcatta
     4441 gaattttaag taaaaaatgc aagaattaca aaaaatattt ttatcaaaaa aggaataagc
     4501 atgcaaatca ctttactttt tcacactcca ttatctgttt gttctcatgc aacaagaact
     4561 tgttggcaaa gctttgaaaa aggcgattgc ggtggcgaaa aagataaaga acttatcgat
     4621 cgcgtgggca acaaattcaa acacgcttca accttagaac atctaaacta tactttttat
     4681 atacaaggaa tttcaagagc ttgcttacaa gaagtcgcaa gacaccgtca cactagtcct
     4741 agtgtaaaaa gcacgcgtta taccttaaaa gaacttcgca atgaaggtga gtttaaaata
     4801 ggagattttg aaaatgcaag ccgttatctt gtgctttgcg gtaatgaaga ggttgataac
     4861 gcaagcatta aagccttaga aaatttacgc actattttac aaaaaagcat tagtctagat
     4921 atagccaaat actgcttacc agaaagctat aaaaccgaac ttacactaac gattaatgca
     4981 agaagtttac aaaatttcat ttctttgcgt agttcaaaat cagctctttg ggagattaga
     5041 aatttagcaa atgctttatt tgaaacctta ccacaagaac acaaatttat atttgaacat
     5101 tgcctacata aagatataga ataaatcata ctaattttat cttatttaaa atatttttat
     5161 gttaccattt ataaaatcaa gctttatgca agtatatttt catatacctt gtgcttgatt
     5221 atagtttctt ataaggactt tttatggata aacaattttt tcaagatttt ctaatgcttt
     5281 cacaagctca tactatagct actcttgcta tgctttgtgt tgttttttac gcattaaaaa
     5341 aaatgcggga tataaaaatc aatttttctc ttcgcatgct atttgcgctt ttaatgggtt
     5401 tggggtttgg ttttgttttg caatatttgg caaattttcc agatgctgaa gaagcaagta
     5461 atattctttg gtatagtgaa acaaaacatt ggtttgcatt tgtaagttct gtttttgtaa
     5521 cttttataaa aatgctagtt gttcctcttg taagcatttg cattataaaa gtaattatag
     5581 aaattgataa aaatatcaaa atatcctcct tgcttggaat aagtcttttt tggatactct
     5641 ttagcacagc catagctgca accttgggta tatttttagg ttatagtttt gatttaggaa
     5701 gtaattttgc catacatgaa ggagataaac aaattcgcga aattcaaact ttttcaaata
     5761 ttatactagg gctaatacct agcaacatca ttacagctat taataaagaa aatattatag
     5821 ctattgtcat tttttccttt tttataggaa ttagtgctaa aaaaatttct aaaaaagaag
     5881 agtgtgaaca agcctttaaa agttttcata attttatcct aaccttttat aatattatga
     5941 tgaacatgac tgctacagtg attagattta tgccttatgc tgtagtttgt atgatggcta
     6001 atgtgctttt aagcaatggt tttgaagcta tcaaaacagc tggacttttt ataatgctta
     6061 tttatatagc tatgttaata atgttcgggg tgcatttttt acttcttgct tcacaagggc
     6121 taaaccctat aaaatatgca aaaaaagcat ttcctgtatg gttatttgca tttagctcaa
     6181 gatcttcttt gggcactttg cctatgacta cttcaacttt gcaaaataaa tttggagtta
     6241 attcagctat agctaatttt gtagcatcta taggtacaac aacaggactt aatggttgtg
     6301 cgggatattt tccagcttta gcggcagttt ttgtagcttt tgctacacat acacatattg
     6361 attttacatt tgctttaatg atagttttgg tagctgttat tggatccttg ggtatagctg
     6421 gagtacctgg aagtgcaact atggcagctt ctattatgct agcagggatt ggatttggta
     6481 ataattttgt catgttaagt ttgattttag ctatagatcc tattatagat atggcaagaa
     6541 cagcaagtaa tgtctcagga gctatgactt cggcactttg tactgcaaaa aatctaaaag
     6601 ccctagataa agaaatttac aattcttaat ctcttaaaac ccaatatttt tcattgggtt
     6661 ttagtattta ttggcaacct tcacattcta tgctacgatc tgcaacattg actttttcac
     6721 tatcagggct ttcgcttctt agataataag tagattttac tccaagctcc caagcgagtt
     6781 gataaatttc atttaaatat cccccacttg ctttatcaag cgataaaaag atatttaaac
     6841 tctgcccttg atcgatccat ttaccacgca cagcagcagc ctttacaaga attttttgat
     6901 caagttcgta ggctggagta tagtattgcc aagtatcaag gcttaaattt ggcacaacaa
     6961 caggtatcat accacttaaa ttttgttcaa accactttct tttgtaaaca ggttctatag
     7021 tctgcgtagt acccaccaaa atagaaatag aagaagtagg tgcaatggcc atcaaataac
     7081 catttctcat accatctttt ttaacttttt ctctaagttt aacccagtcg cattcacttt
     7141 gatcaaataa gccctctctt aaagttaaag ctttagcctt aggacttgct acatcaatag
     7201 gaaaaatccc cttgctccaa tttgatcctt caaaatcctc ataagaacct ttttcaagag
     7261 ctaaatttga actcgcatta atagcctcaa agctaatttg ttccataatc tcatcgattt
     7321 tatttaaatg ctcatcgctt ccccaataaa tcttagcttc agcaagcatt tgtgcctcac
     7381 ccatgactcc aagacctatg gcgcgagatt ttaaatttgt atcttttact tttctatgag
     7441 gataaaaatt taaatctatc acattatcaa gcatacgaat agcagttggc acaacacgct
     7501 ctatatcttc tttagtatac actttgctaa ggtttatact tgctagatta caaacggctg
     7561 tttttccatc atttttatat ttttctacta tataaacttt attaccatca atactatcta
     7621 aagttgagat ttttttggct ggtttttcat atcccccatc gatcacaact ttttgttctt
     7681 catcaaaatg aagttcatct ccattttcaa aaactacttt aatttgataa taatttggct
     7741 cggtattttg aaaaatttca gtacataaat ttgaacttct aataattcct acatgagcat
     7801 ttggatttgc tctgttagcg ctatccttaa aacataaaaa tggcaagcct gtttcaaaat
     7861 aatttagcaa aattttcttc caaagctctt tagcttctac gatttctttg gtaatgcttt
     7921 catctttttc atattcttca tagcgttttt caaaagcttc accatataaa tcacataaat
     7981 ctgctgtatc tgcaggatca aaaagagtcc atttatcatt agctcttact ctcttcataa
     8041 aaagatcatt gatccataaa gcagggaaaa gttcatgagc acggcgtctt tcttcacctg
     8101 aatttttacg caaatcaata aaatcactta tatccatgtg ccaaggttct atataaacag
     8161 ctatagctcc ttttctggtt cctagctgat ctactgccac ggcaatatca ttagtaattt
     8221 tcaagaaagg tataatccct cctgcggcat ttttatgccc atctatgctt ccacccatag
     8281 cacgcacttt agaccaatcc caacctatac cgccaccaaa tttagaaagc aaagccattt
     8341 cttggtaaga atcaaaaata ccttcaatat tatcaggggt tgatcctata taacaagaac
     8401 taagctgatg gcgcgttgtt cttgcattag ataaagtcgg agttgcaagc atgagttcaa
     8461 atttagaaat taaatcataa aatttcttcg cccattcttg aggattaaat tcattctgcg
     8521 ctaaaaacat cgcaatggcc ataaacattt gttgaggaag ttctataggc atacctttac
     8581 tatctttaat caagtatcta tcatataaag ttttaatacc aagataagta aattgcatat
     8641 cgcgttcagg tttaatataa gcatttaaat catctaaatc gtatttttct ttaagaccaa
     8701 gtaagattct tccttctttt tcgccctttt caaaatactc acgcaaatga ttatagcgat
     8761 tcataccatt aactttttta tataaatcaa ataaaaaaag tctagctgca acaaaggtcc
     8821 aatttggaca atcaatatct atcttatcta ctgcagtttt aattaaagtt ttttgaattt
     8881 cttcagttga aattccatca cgaaattgaa tctttgcatc gagttcaagt tcgcttaaat
     8941 tcacaccttc taaatctttt acagcatcag aggtgcattt tttgatctta gaaacatcca
     9001 attcttctgt acgaccattt cttttaataa ctttcattgc cttccttgct ttttatttaa
     9061 atgttctttt aaaaattaca tcaacatttt ttgtatagta gttataatcg aaacattttc
     9121 ttacatcctc ttcgctcaaa ctttttctta aatcttcatc gcttaaaagc gctaacaaaa
     9181 acaaactttc atttttttca ttgatagcag ccttaccatt ttgcaaatct gcccaaactt
     9241 tcatagcgtt tctttgaact attttataag cttcttcacg actaatgcct ttaaatggaa
     9301 gctctaaaag caccctccct gaaaatacaa gcccacctgt aagatttaaa tttttcatca
     9361 tattttcagg ataaactaaa agcttatcaa tcaaatttgt aagacgcata agcataaaat
     9421 cagccgtgat aaaagcatca ggcaaaataa atctttcaac actagaatga gatatatctc
     9481 tttcatgcca aagtgcaaca ttttctaaag ctggagttac aaaagatcta agcacacgac
     9541 aaagccctgt gatattttca cttaaaacag gatttctttt atgtggcata gctgaacttc
     9601 ctttttgtcc tacactaaaa tactcttcag cctcataaac ttcagttctt tgaaaatgtc
     9661 ttatggctac agcgatttgc tcacaacttg aagctaaaat tgcaatagca gaaataactt
     9721 gagcataacg atctctttgg atcacttgat ttgaaacagg ggcagcttta agacctaaat
     9781 ttttacaaac ttcttcttca aattctaaag gagcatgagc aaaatttccc attgcaccac
     9841 tgatttttcc atagcttacc acttcttttg catgttctaa aagctctttt gcatgcaaaa
     9901 tttcatcata ccaaatagct aacactaaac caaaagtgat aggctctcca tgaattccat
     9961 gacttcttcc taccattaag gtatttttat gctccaaagc acgctttttg atcacttcta
    10021 aaagcaaaga aacatcttct aaaataagct ccaaactctc ttttatctgt aaagcaacag
    10081 ccgtatctat acaatcagaa cttgtcattg cataatgcac aaaacgactc tcttctccca
    10141 aactttcact tacacttgta agaaaagcga taacatcgtg ttttgtggtt ttttctattt
    10201 cgtctattct tacaatatca aattttgcat ttttaagaat tttttcgcag tctgtgtcat
    10261 taatgagacc gagtttattc caagctttta cagcggctaa ttctactttt aaccacgtat
    10321 cgtattttgc ttgcatatcc cattttttag ccatgatttc tctgctatat ctttcaacca
    10381 tctttgaaac ctttttagct ataattttat attttaaaaa acagaaatta tatcaaatta
    10441 tcctaagaaa gttattaaat ggcttacata aaaataaaac tctcaaataa tggaaaaaag
    10501 gcatttcaag tccttatgga aaatttaaaa attagcataa atgaagcaca aaaactcata
    10561 gacaaaaaaa gacttttttg tgatggaatt ttagtagaag aaaagaatga aattttaaat
    10621 ggtttagtag agcttatagt ctatgaaaac aatcccaaag gagtagaaat tgtctttgaa
    10681 aatgaagact ttgccatact tgaaaaagaa agtgggatct taagtcatcc aaatggtaga
    10741 cattgtaaat acagtcttag tgatgaaatt tggcatcttt ggggaaaaga agcttgcgta
    10801 gcacacagac ttgataaaga aacgagcgga cttatacttg tagccaaaaa taaaaaagct
    10861 caaattgatc ttaaagcttt gtttgaaaaa aaactggttc aaaaagaata ccttgctcta
    10921 gctaacggaa aaatagaaga aaattttata attgataaag ccataaattt agccaaaaac
    10981 tacgatgatg taaaaacaag gatgcaaatt tgtaaggaag gaaaacaagc tatcactgag
    11041 tttgaaattt tagaatactt tcctaaaatc aacgctactc ttttactctg caaaccactc
    11101 acaggcagac aacaccaaat tagagtgcat ttattttata aaaaccacaa aattttaggc
    11161 gatccactct atggccttga aaaaaaagat atagaaaaaa ttttagatga caaaatggac
    11221 atagaagaac gcataaaact aagcggtgct aaacgcttgt gtttgcattc ttatcgttta
    11281 aaatttaact ataacggaga aaattttgat attttttcaa aaaagggtat ggaaaaaatt
    11341 ttagcagcat tttaaaataa aggcgatact tcatatctaa caagctatca t
//
LOCUS       DARGBD010000053        11248 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.053, whole genome shotgun sequence.
ACCESSION   DARGBD010000053 DARGBD010000000
VERSION     DARGBD010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11248
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.053"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            175..486
                     /gene="rpsJ"
                     /locus_tag="SFZ04_001141"
     CDS             175..486
                     /gene="rpsJ"
                     /locus_tag="SFZ04_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEG8065415.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            496..1071
                     /locus_tag="SFZ04_001142"
     CDS             496..1071
                     /locus_tag="SFZ04_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEG8065416.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            1068..1682
                     /gene="rplD"
                     /locus_tag="SFZ04_001143"
     CDS             1068..1682
                     /gene="rplD"
                     /locus_tag="SFZ04_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEG8065417.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESITKEG"
     gene            1685..1966
                     /locus_tag="SFZ04_001144"
     CDS             1685..1966
                     /locus_tag="SFZ04_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEG8065418.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPEGVSLENTEA"
     gene            1968..2798
                     /gene="rplB"
                     /locus_tag="SFZ04_001145"
     CDS             1968..2798
                     /gene="rplB"
                     /locus_tag="SFZ04_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEG8065419.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVSAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            2800..3081
                     /gene="rpsS"
                     /locus_tag="SFZ04_001146"
     CDS             2800..3081
                     /gene="rpsS"
                     /locus_tag="SFZ04_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEG8065420.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            3092..3517
                     /gene="rplV"
                     /locus_tag="SFZ04_001147"
     CDS             3092..3517
                     /gene="rplV"
                     /locus_tag="SFZ04_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEG8065421.1"
                     /translation="MSKALIKFIRLSSTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     VKAEVKAEEKKTVAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            3517..4218
                     /gene="rpsC"
                     /locus_tag="SFZ04_001148"
     CDS             3517..4218
                     /gene="rpsC"
                     /locus_tag="SFZ04_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEG8065422.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            4221..4646
                     /gene="rplP"
                     /locus_tag="SFZ04_001149"
     CDS             4221..4646
                     /gene="rplP"
                     /locus_tag="SFZ04_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEG8065423.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            4633..4818
                     /gene="rpmC"
                     /locus_tag="SFZ04_001150"
     CDS             4633..4818
                     /gene="rpmC"
                     /locus_tag="SFZ04_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEG8065424.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            4828..5079
                     /gene="rpsQ"
                     /locus_tag="SFZ04_001151"
     CDS             4828..5079
                     /gene="rpsQ"
                     /locus_tag="SFZ04_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEG8065425.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            5079..5447
                     /gene="rplN"
                     /locus_tag="SFZ04_001152"
     CDS             5079..5447
                     /gene="rplN"
                     /locus_tag="SFZ04_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEG8065426.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            5447..5680
                     /locus_tag="SFZ04_001153"
     CDS             5447..5680
                     /locus_tag="SFZ04_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEG8065427.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            5684..6229
                     /gene="rplE"
                     /locus_tag="SFZ04_001154"
     CDS             5684..6229
                     /gene="rplE"
                     /locus_tag="SFZ04_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEG8065428.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            6231..6416
                     /locus_tag="SFZ04_001155"
     CDS             6231..6416
                     /locus_tag="SFZ04_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEG8065429.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            6426..6821
                     /gene="rpsH"
                     /locus_tag="SFZ04_001156"
     CDS             6426..6821
                     /gene="rpsH"
                     /locus_tag="SFZ04_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEG8065430.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            6900..7436
                     /gene="rplF"
                     /locus_tag="SFZ04_001157"
     CDS             6900..7436
                     /gene="rplF"
                     /locus_tag="SFZ04_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEG8065431.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            7446..7802
                     /locus_tag="SFZ04_001158"
     CDS             7446..7802
                     /locus_tag="SFZ04_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEG8065432.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYIYHG
                     VIAALAESLRENGIRL"
     gene            7814..8257
                     /gene="rpsE"
                     /locus_tag="SFZ04_001159"
     CDS             7814..8257
                     /gene="rpsE"
                     /locus_tag="SFZ04_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEG8065433.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            8262..8654
                     /locus_tag="SFZ04_001160"
     CDS             8262..8654
                     /locus_tag="SFZ04_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEG8065434.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISITGSK"
     gene            8654..9919
                     /gene="secY"
                     /locus_tag="SFZ04_001161"
     CDS             8654..9919
                     /gene="secY"
                     /locus_tag="SFZ04_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEG8065435.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNSYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(9947..11218)
                     /locus_tag="SFZ04_001162"
     CDS             complement(9947..11218)
                     /locus_tag="SFZ04_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8065436.1"
                     /translation="MNDKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTISGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAIGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLTWSIVIFIVCIVFLFLKQKPRIN"
BASE COUNT         4207 a         1566 c         2266 g         3209 t
ORIGIN      
        1 ataatgataa tttttaaatt ctaaaaattc tatttttatc ctttttaaaa ggaaaataat
       61 agaaaaattt catcaaattc cttgactttg aaaacaagat tttatatact ctcatttcaa
      121 tttttataaa attggttagt ttttaactaa cgagttcttt ttaaaggaaa tattatggaa
      181 agaattaggc ttaagctaaa agcttatgac catcgagtac tagacagaac agttgcagca
      241 atcgtagaag ctgttaaaag aacaggtgcg gatattagag gtccgatacc aatgcctact
      301 aaaatcaaac gctatacagt tttaaaatct ccacacatta acaaagattc tcgtgagcag
      361 tttgaaataa gaattcacgc gcgtatgcta gatatagtag cagcgactcc agatacagtt
      421 gattctttaa cgaagcttga tttagcgcca gaagtaagcg ttgaagtaag agctatgggt
      481 aagtaaggat aagatatgga atatattgta gaaaaaattg gaatgagcag aacaattact
      541 aatccaagta tcgctgtaac tttactaaga gttgtaaatg caaaagtatg tgaagttgaa
      601 ggcggaaagg ctttagtagc atatccaaaa ggtaaagcaa gtaataaatg tgtcgcagga
      661 caacaaaaaa aatacaatct ttctgcagaa tacaatagat ttgcgacttt agaagtagca
      721 aatactgaag caggagattt agatgaaact ccattaaatg aagcaaaaat tttaaaagta
      781 agctttaaca ctaaaggtag aggttatagc ggtgttatga agagacataa cttcgcaggg
      841 ggtccagcaa gtcacggttc tagatttcac agacgccatg gatctattgg taatagagaa
      901 tggccaggtc gtgttcaacc aggtatgaaa atggcaggac actatggaaa tactaaagtg
      961 accgttaaaa acgaagttgt atcttatgat gctgaaaata aaattttagt agttaaaggt
     1021 gcagtaccag gttataatgg tgctatgggt aaaataagga ttgcaaaatg agtaaagtag
     1081 ttgttttaaa tgataaatta gaaaaagcag gtgaacttga tttaccttca aaatatgcgg
     1141 aagtaaatcc acacaatctt tacttgtatg taaaatctta ccttgcaagt ttaagagcaa
     1201 atacagctca tactaaaggt agaagtgatg taagtggtgg tggtaaaaaa ccttggagac
     1261 aaaaaggtcg tggcggtgct agagcgggtt caacaagaac taacgtttgg gtaggcggtg
     1321 cggttgcttt tggtccaaca aatgaaagaa actacttcca aaaagtaaat aaaaaacaaa
     1381 aaagattggc gcttgaaaga gctttagcag ataaagcagc taaaggtgtg ttatttactg
     1441 ctgattcttt ggctattgaa agtggtaaaa caaaagatgc aaacgctgtg attaaaaaac
     1501 ttggcgtcaa agatgcttta atcgttaaag atttactaga tgaaaaaaca cttttagctt
     1561 acagaaattt agcaaattgc tatgtagttg atgtaactga agtaaatgct tatttagtat
     1621 ctgtatttaa tgctgttatt atggaaaaat cagcgttaga atctattaca aaagagggat
     1681 aattatggca gatattactg atataaagac tatactttac acagaaaaaa gtttgaattt
     1741 gcaagagcaa ggtgtcgtag ttattcaaac ttcgccaaaa atgactaaaa caggcttaaa
     1801 agcggtttta aaagagtatt ttggtgtaac tccaaaaagc atcaattcct taagaatgga
     1861 tggaaaaatt aagcgtttta gaggtcgttt aggtcaaaga aacaattaca aaaaattcta
     1921 tgttaagcta cctgaaggtg ttagcttaga aaatacggag gcttaagatg gcaattaaaa
     1981 cttataaacc atatactcca agtagaagat atatcacagg tttaagttct gaagatatta
     2041 cagctaaacc aagtgtacgc tcactacttg ttaaacttcc agcacacgcg ggtcgtaaca
     2101 gctatggaag aattacaagt cgtcataaag aagcgggtgc taaaaaactt tacagaatta
     2161 ttgattttaa acgtcgtaaa ttcggtatag aaggcaaagt agaagcaatc gagtatgatc
     2221 catatagaaa ttgtagaatt gctttgattg cttataaaga tggggaaaaa agatatattc
     2281 ttcaaccacg tggattaagc gttggtgata tagtttcagc tgctgaaagc ggacttgata
     2341 ttaaaccagg caatgcaatg aaacttaaaa acattcctgt gggtactatt gttcataatg
     2401 ttgagttaaa accaggtaaa ggcggtcaaa tgatccgttc cgcaggtgct tatgcacaac
     2461 ttatgggtaa agaagaaaaa tatgttattt taagacttgc aagtggcgaa atgagacaag
     2521 ttttagctga atgtatggca agtatcggcg aagttggaaa tgaagaatgg gctaatgtaa
     2581 ctatcggtaa agcaggtaga aatcgccata gaggtatccg cccgcaaact cgtggttctg
     2641 caatgaaccc agtagatcac ccgcacggtg ggggtgaagg taagaaaaat tcaggccgtc
     2701 atccagtaac tccgtggggt aaaccaacca aaggtgcgaa aactcgtcgt aaaaaggcta
     2761 gcgataagct aataatttca agaagaaaag gaaagtaaga tggctagatc actaaaaaaa
     2821 ggtccttttg ttgatgatca tgtaatgaaa aaagtcatcg ctgctaaaaa ggctaatgat
     2881 aataaaccaa ttaaaacttg gtcaagaaga agcacaatta ctcctgatat gataggactt
     2941 acatttaatg ttcataatgg taaaagcttt attccagttt atattactga aaatcacatc
     3001 ggttataagc ttggtgaatt tgctccaaca cgcacattta aagggcataa aggctctgtg
     3061 caaaagaaaa ttggtaagta agggataaga tatgagtaaa gcattaatta aattcataag
     3121 attatcttca actaaagcaa gattgattgc tagagaagtt caggggatga atgcagaatt
     3181 agctatggct agtttaaaat ttatgccaaa taaaggtgca aaatatatcg caaatgcaat
     3241 ttcaagtgca gtagcaaatg gtggctttga agcaaacgaa gtgattgtaa aaagttgtcg
     3301 tgttgacgca gctgcggtat taaaaagatt tagaccaaga gctagaggaa gtgcaagtcg
     3361 tattagaaaa ccaacttcac atattttagt agaagtggta aaagcggaag tgaaagctga
     3421 agagaaaaaa acagtagcta aaaaaactac tacaacaaaa gctccagcta aaaaaacaac
     3481 aagcactaaa aaagcaacag cgaaaaagga aagctaatgg gacaaaaagt taatccaatt
     3541 ggtctaagac taggaatcaa tagaaactgg gaatcaagat ggtttccaac taaagcaaat
     3601 ttagtagaaa atatcggtga agattacaaa atcagagctt tcttaaaaag aaaactttat
     3661 tacgcaggaa ttagccaaat tttagtagaa agaactgcta aaaaacttcg cgttactgta
     3721 gttgctgcaa gaccaggtat catcatcggt aaaaaaggta gtgatgttga taatttaaga
     3781 aaagaattgc aagatttaat cggtaaagat gtaaatatca atatcaaaga agaaagaaaa
     3841 gcaggagctt cagctcaact tgctgctgaa agtgttgcaa ctcaacttga aaaaagaatt
     3901 gcttttagaa gagcaatgaa aaaagtaatc caaggtgcgc aaaaagcagg tgctaaagga
     3961 attaaagttt cagtttccgg tcgtttaggc ggtgctgaaa tggcaagaac agaatggtat
     4021 cttgaaggac gcgttccact tcatacttta agagcaaaaa tcgattatgg ttttgcagaa
     4081 gctagaacta cttatggaaa cataggagtt aaagtatgga tctttaaagg tgaagtattg
     4141 cacaaaggta tgcaacctga aaaaactgaa gaaagtgctc cagctaaaaa gccaagacgc
     4201 acaagaaggg gtaaataatc atgttaatgc caaaaagaac taaatatcgc aaaatgatga
     4261 aagggcgtaa cagaggttat gctaatcgtg gaacagaatt tacttttggt gaatttgcat
     4321 taaaagcaac tgaagcagga cgcattaact cacgccaaat cgaagcagcg cgtatcgctt
     4381 taactcgttt tgttaaaaga caaggaaaaa cttggattag agtttttcca gataagcctt
     4441 tgacaaaaaa acctttagaa actcgtatgg gtaaaggtaa aggtgctgtt gaggaatggg
     4501 taatgaatat caagccaggt cgtatcattt atgaaatggc aggagtaagc gaagaaatgg
     4561 caagagaagc attgacttta gctatgcata aacttccatt taaaactaag tttgttacaa
     4621 gagagagcca aaatgaaata tactgagatt aaagataaaa cagcagctga gcttgcaaca
     4681 atgctaaaag aaaaaaaggt gcttttattc actttaaaac aaaagctaaa aacaatgcaa
     4741 cttactaatc caaaagagat tagccaagta aaaaaagaca ttgctagaat aaatacagca
     4801 attaacgctt taagataagg atagaaaatg gcatttaaaa gagaaattca aggcgttgtt
     4861 gttaaaatcg ctggtgaaaa aaccgcaagt gttttggttg aaagaaaagt ggttcatcca
     4921 agatatagaa aaattgttaa acgctttaaa aaatatctaa ttcatgatga gagaaatgaa
     4981 gttaaagtgg gtgatactgt tgttgcagta gaatgcagac cactttcaaa aagaaaatca
     5041 tttcgcttaa aatctgtatt agctacagga gttgagtaat gattcaaagt tttacaagac
     5101 ttgcagttgc tgataatagc ggtgcaaaag aattaatgtg tatcaaggtt ttagggggta
     5161 gcaaaagaag atacgctacc gtaggtgatg taatcgttgc atctgttaaa aaagctttac
     5221 caaatggaaa agttaaaaaa ggtcaagtgg taaaagcggt tatcgttaga actaaaaaag
     5281 aaattcatag agataatggt tctttgattc gttttgatga aaatgctgcg gttattcttg
     5341 acaacaaaag agagcctatc ggaactcgta tctttgggcc agtgggcaga gaagttagat
     5401 atggtggctt tatgaaaatc gtttcactag caccggaggt attataatgg cggttaaatt
     5461 aaaaatcaaa aaaggtgata gcgttaaggt tatcacaggt gatgataaag gtaaaacagg
     5521 taaagtttta gcggtatatc caaaaacact taaagtggta gttgaaggat gtaaaatcgc
     5581 taaaaaagct attaagccga gtgagaaaaa cccaaatggt ggttttatca ataaagaaat
     5641 gccaatggat atttccaatg tggcaaaagt tcaggagtaa gcgatgatga gattaaaaga
     5701 aaaatataat caaagcatta aacctgcatt ggttaaagaa tttgatatta aaaatcctat
     5761 gcttatccct gtgatcgaaa aagtagttat cagcgtaggt gctggtgagt tggctaaaga
     5821 tcaaaaagta ttgcaaaatg ttgcagatac tatttcttta attgcaggac aaaaggctgt
     5881 gattactaaa gctaaaaaat cagttgcagg atttaaagtt cgcgaaggtt ttcctgtggg
     5941 tgtaatggta actttaagaa aagaaaatat gtatgctttt cttgataaat taatttccat
     6001 tgctttgcca agggtgaaag actttagagg tttaagtaga gatggttttg atggacgcgg
     6061 aaactataac ttcggtcttg atgagcagtt gatgttccca gaagtggagt atgataaaat
     6121 tttaagaact catggtatga acatttctat agttacaaca gcacaaaatg acaaacaggc
     6181 acaaaagtta ttagaactta tcggtgtgcc atttacaaaa ggaaagtaag atggctaaaa
     6241 aatcaatgat tgcaaaagcg gcacgcaagc ctaaatttaa agttagagct tatacaagat
     6301 gccaaatttg tggacgtccg cattcggttt atagagattt tggaatttgc agagtttgct
     6361 taagaaaaat gggcaacgaa ggtttgattc caggtcttaa gaaagcaagt tggtaaggat
     6421 aaaatatgat aaatgatatt atttcagatt cactcactcg tatcagaaat gcaggaatga
     6481 gaaagcttga aacaaccaag cttttacatt ctaaagttgt agaagcttta gttggaattt
     6541 ttcaagctaa gggctatatt gagagtttta atgttattga agaagataaa aagaaattta
     6601 tcaatgtagt tttaaaatac gatgaaaaag gtaagagtgt tatcaatgag cttaaaagaa
     6661 tttctaagcc tggtcgtcgt gtttataaag gtaaagatga aatcaagcgt tttaaaaatg
     6721 gttatggtac tatcgtagtt agcacaagtc atggcgtttt agctaatgat gaagcttata
     6781 aagcaggtgt tggcggcgaa attttatgta ccatttggta aaaaatctgc tttttatggc
     6841 attgggtatc cattctttta aaaaagtaga aatatcctag acaaataaaa aggaaaaata
     6901 tgtctcgtat aggtaaacaa ccgattgcta ttccagcagg agtagaagta aaattagaag
     6961 gaaatttgct taaatttaaa aaaggaaatt tagcaaaaga acttgatact aaagcaaatg
     7021 taaatgttga gattaaagat aataatattc ttttttctcc aaaaggtgaa gacagacaaa
     7081 gtagagctta ttggggaact tacagagctt tagcttacaa tatcgttgta ggtttaactc
     7141 aaggtttttc aaaaactctt gaaatcaatg gagttggtta taaagcagct ttaaaaggta
     7201 aagttttaga actaagcctt ggtttttctc atcctattaa ttatgatatt ccagaaggaa
     7261 ttgaaattgt agtggataaa aatactattg cagttaaagg aagtgataaa caagttgtag
     7321 gtcaagttgc tgctcaaatt cgtgaattta gaccaccaga gccatataaa ggaaaaggcg
     7381 ttaagtattc tgatgaacgc attatccgca aagctggtaa gacatctaag aagtaagggt
     7441 agaatatgag agcaaatgta ttaaaaagaa aactaacttt aagaatcaaa agaaaaaaaa
     7501 gaattagagc gaaaatttca ggttgtgaaa attttccaag aatttctgta tttaaatcga
     7561 acagaactct atatatccaa gcgattgatg atgtaaaagc tgtaacttta gcagcagttg
     7621 atggacgcaa acttggcgtt aaagcaaata aagaaggtgc taaaaaaatc gctgctgaat
     7681 ttgctaaaac tttaaaagct aaaaagatag aacaagctgt ttttgataga aatggttata
     7741 tatatcatgg tgttatcgca gcattggctg aatctttaag agaaaatggc attaggctat
     7801 aaggggtaaa tcgatggaaa aatataatag agaagaattt gaagaagtaa tcgtcgatat
     7861 cggcagagtt actaaggttg ttaaaggtgg tagaagattt agatttactg ctttagttat
     7921 tgttggaaac cgcaaaggtt tggtaggtgt tggttatggt aaggctaagg aagttccaga
     7981 tgccatccgt aaagctgttg acgatgcgtt taaaaatatc gttgaagtta aaactaaagg
     8041 ctcaactatc gctcacgatg tagaggtgaa atacaacgca agtagaattt tacttaaacc
     8101 agctagcgaa ggtacaggag ttatcgcagg tggttctaca cgccctatcg tggaacttgc
     8161 aggtattaaa gacatcttaa ccaagtcttt gggttcaaat aattcagcta atgtggttcg
     8221 tgctacaatc aaagctttaa caatgttaaa aggataagaa gatgaattta acaaaagcag
     8281 cgggttcaac gcataaaact aaaagaattg gccgtggtca aggttctggc atgggtaaga
     8341 ctgctactaa agggggtaaa ggtcaaactg ctagaaaagg ttataatgaa aaaagaggtt
     8401 ttgaaggggg tcaacaacca cttcaaagaa gactaccaaa agtaggtttt acttctaaaa
     8461 ttcaaaaacc ttatgtgatc aatgttgaaa aaatcacagc tgtaaaagag cttagtgaaa
     8521 ttacatttga gagcattaaa agtgttcaca aaatttcaaa atctgtgaat aaaatcaaat
     8581 taattggtgc aagtgcaaaa gacttagtat caaaaatcaa agacgagaat attagcatca
     8641 ccggatcaaa ataatgaata gagcattgac gaataagatt ttaatcacct tagcattttt
     8701 atttgcttat agggttctgg cttatgtgcc agttcctggc gtcaatgctg atgtgattgc
     8761 ggaatttttt aataacaatc aaaacaatgc tttgggttta tttaatgttt ttagtggtgg
     8821 agcagctgaa cgcttttcta tcatttcttt aggtattatg ccttatatta ctgcttctat
     8881 tattatggag cttcttgcag caacttttcc aaatattggt aagatgaaaa aagagcgtga
     8941 tagtatgcaa aaatatatgc aaattatccg ttatgcgact attgtgatta ctttggttca
     9001 aagtataggc gttgctatag gtttgcaaag cttgcacggt cgtggtggtg caggggctat
     9061 aatggtagaa gatttaaata tgtttatcgc actttgtgct atttctatgc ttgctggaac
     9121 tatgctttta atgtggcttg gcgaacaaat cacacaaaga ggtataggaa atggtatttc
     9181 tttaatcatt tttgcaggta ttgtttcagg tattccaaga gcgatttcag gaactgtagg
     9241 acaaatcaat tcaggcgaga tgaatttctt aaccgctttt gcaatttttg ctttgatttt
     9301 aatcaccata ggggtgatta tttatataga acttggagaa agaagaattc ctatttctta
     9361 ttctcgtaaa gttgtaatgc aaaatcaaaa caaacgcatt atgaattata ttcctattaa
     9421 actcaatctt agtggggtta ttccaccgat ttttgctagt gcgattttga tgtttccaac
     9481 aacaatttta caaactagta caaatcctta tctacaagcc attaatgact ttttaaatcc
     9541 aaatagttat ttgtttcatg ttctaacttt cttgtttgta attttctttg cttattttta
     9601 tgcttctatc gtatttaacg ctaaagacat agcagaaaat ttgaaaaaac aaggcggttt
     9661 tatccctgga attcgtccag gtgaaggaac ttcaagttat cttaacgaag tggcttctcg
     9721 tttaacttta tcaggttcta tttatttagg gcttgttgca accttacctt gggttttggt
     9781 gaaatttatg ggtgtgcctt ttcattttgg cggcacttct gtacttattg tagttcaagt
     9841 agcacttgat acgatgagaa aaattgaagc tcaaatttat atgagtaaat accaaacttt
     9901 aagtgcggta ggtttgtaat aaataaaatt agcaagattt ttcttgctaa tttattctag
     9961 gtttttgctt taaaaataaa aacacaatgc acactataaa aattactatt gaccatgtta
    10021 aaaaagcatc tacaagaccc atttgtctaa cgataggttg agagataata ggacttaaaa
    10081 attgtcctaa aaatatacaa cttgctaaaa ttccataagc cctagagcga gcattttcag
    10141 gacagattga aaaaagataa gccgtattat ttacaagcat aatacctcca cccattccaa
    10201 gcaaagctaa ggcgattaaa actgtgaaaa agctatctac taaaaaaagc agcaaaaaag
    10261 aacaagatac gataaaaaga gttaaaacat agatagtttt aatacttaag aattttataa
    10321 tatatctata gcttagagag aaaaaaccat aacatagtgc agatacagac atcgaaatac
    10381 ctatatattt aggatccaat cccaaatgtt cttctatata gtaaggaagt tgagttggcg
    10441 aaatataata aactaccatg ataaaaaaac ctataaaata gatagggaaa aattgccaat
    10501 aatttgtttt tgtttctatt tttgtatgat tatagaattt aaattttcta ggttcaaaaa
    10561 gataaatgat agccattaag gtaattaaaa ttccaagtcc atataccaaa aaaggataac
    10621 gccaagaata acttgaaaca aatcccgcaa tagaaataaa aacagcaccc cctatcgcac
    10681 aaaaaaatcc ttgaaggctt aaagcatttt ctctgcgatt aaagccacca cgactataat
    10741 aatccccaag caaagccgaa gcgcctgtca ttataaaagc agttgccata ccaaaaatag
    10801 ctcttgaagt cagtatagca taaatatcat ttaagaaaaa gccacttatc ccagaaatag
    10861 tccaaaccac catagctgga agaatgaatt ttaatttgcc aaatttatcc attaaaatac
    10921 cagcaaatgg agataaaatg acaacaaaaa tagcagggat ggttaaaact aagcgaacaa
    10981 gtatatcaag atgagctaat gtgaaacttg aagcaagagt agcgccactt tgggttaaaa
    11041 gttcttcaaa atgtctgttg atagcaggca gagcagatga aatgaccacg cttcctagca
    11101 tagtcatagc agccatagaa aacacagctg ctttaaatcc ggacttttca gtaatttgaa
    11161 ttattttttt atccattttt gtgtcatttg gatgaaattt ataagttttg tcattcataa
    11221 tttttacctt ttttatttta ttatactc
//
LOCUS       DARGBD010000054        10770 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.054, whole genome shotgun sequence.
ACCESSION   DARGBD010000054 DARGBD010000000
VERSION     DARGBD010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10770
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.054"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            24..323
                     /locus_tag="SFZ04_001163"
     CDS             24..323
                     /locus_tag="SFZ04_001163"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065437.1"
                     /translation="MKILKNKYFILWMIGFFAIVCLCLYFNLEVKIIASAISAYAVSI
                     SLVLNAYSIFEKTRADKFNLTMQLLSKWDEKHFIEARDYTREQQNIKEKKEMKKY"
     gene            complement(1206..2399)
                     /locus_tag="SFZ04_001164"
                     /pseudo
     CDS             complement(1206..2399)
                     /locus_tag="SFZ04_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
     gene            2545..3618
                     /gene="ispG"
                     /locus_tag="SFZ04_001165"
                     /gene_synonym="gcpE"
     CDS             2545..3618
                     /gene="ispG"
                     /locus_tag="SFZ04_001165"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEG8065438.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            complement(3648..4346)
                     /gene="flgH"
                     /locus_tag="SFZ04_001166"
     CDS             complement(3648..4346)
                     /gene="flgH"
                     /locus_tag="SFZ04_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEG8065439.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            4436..5941
                     /gene="pta"
                     /locus_tag="SFZ04_001167"
     CDS             4436..5941
                     /gene="pta"
                     /locus_tag="SFZ04_001167"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEG8065440.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLEEYDFITPHRFKYELIKQSVKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDATRLSLDLSAMQIMNPLNSEYNQEFTSILYETRKSKGMSLEEA
                     KILVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPSAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            5955..7145
                     /locus_tag="SFZ04_001168"
     CDS             5955..7145
                     /locus_tag="SFZ04_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEG8065441.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANVAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLVHLGIELDFELNKQRISGERMINHANSKVKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(7173..>10770)
                     /locus_tag="SFZ04_001169"
     CDS             complement(7173..>10770)
                     /locus_tag="SFZ04_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HEG8065442.1"
                     /translation="KFIKQNEHQFEDEFISKVLEILGWCFVRQDEKIIQGKLEKPDFL
                     LFSNDKLKSKYENLDKETKKSSNDFTIILESKAYNIEIDNKKVKDNPHFQILRYLGNL
                     KKNYGFLTNGRFWRFYDNSILNSNKVFYEINLEKIIEDQNIEAFAYFYSVFSAFNFTE
                     KEDHLEITLQNNKLSKIKIEDDLKSIIYGTNGNESLFEFIGSRIYNKTKADLKLIYEN
                     SLYFIFRLLFIAYFEDKFEIILEKHKYFKSKISLRTLLENLQEDESSSGGFGELENIF
                     NIYNKGKGNFDMPVFNGGLFDESKTALLSTPKIFNDKDLKFILNQLLNFKDKNLSFKR
                     DYKTLSVEHLGTIYEGLLSYFFEIANEDIYYVSYKEKSKEIECYFDNYDFKILEKSKK
                     VEKYTFYKKGQIYLKNTSNSRKASASFYTPQSIANFLIQSALKDKLNNENILKFKILD
                     NACGSGHFLVGVLNAITHIVLSDFDHFTNLKELYEEEKENILNHIKDFVQDYEVDESD
                     ILKRLLLKRIIYGVDLNPFSIELTKLSLWIDSFIFTTPLSFIEHHIKCGNALINSNLS
                     DFKDLIKQNSSNLFTNSITQEFEILQEVFEKLDNLKDTNEEQIKQSKQIYQNEITPKL
                     NKLNLYLNYINTLHFVNKEELQILKALSQDDIQNLSQNEQAKAIISKYQKEFNFFNYE
                     LEFPEIVENQVFKGFDIIIGNPPWDKTKFSDSDFFPQYKSDYRSLIASKKKEIQDNLL
                     AKDYIKQNYEKQKAYINDLSEYYKKAYPLNKGSGDGNLFRLFVEKNLSLLKQDGNLAY
                     VLPSALMFEDGSLTLRKEILENKTLEYFYSFENNKAIFIDVHRSYKFALMQVKNTQAN
                     HTHKIKMMFYKTDMNSLKNKDEILTLSLKDIKKLSPTHLALMELKDKQALEILRKSYN
                     AFQNLSFDYIDFRRELDMTNDKDLFIEEFREGLLPLYEGKMIHQFNANFSQTTYFLEK
                     AKLDEHLKSKELYRAKKATGKELNPKLIKYDREFFRLGYRKIASDTNERTLIASLLPK
                     NCGGADSTYSNIPKQYVLKDDVICMDIVPYERILFVLALFNSLVVDFIIRNMVQINVS
                     KSYLERIPLPQPSDEEIQNNEIYKTLAKNALLLQLYNDQNRHFDELKQEFNIKNEEIP
                     KTKKAYNILRAKNDLLVKELYGLSDDEFSYMISTFKVLNEKQSEYITLLKTI"
BASE COUNT         3713 a         1377 c         1684 g         3996 t
ORIGIN      
        1 aattatatat taaagggatt ttaatgaaaa tattaaaaaa taaatatttt attctgtgga
       61 tgatcgggtt ttttgcaatc gtatgtttat gtttatattt taatttagaa gttaaaatta
      121 ttgcatctgc catttctgcc tatgcggtgt caatctcatt ggtgttaaat gcttattcta
      181 tttttgaaaa aacaagagcg gataaattta atttaacaat gcagttatta tctaaatggg
      241 atgaaaaaca ttttatagag gcaagagatt atacaagaga gcaacaaaat ataaaagaaa
      301 aaaaggaaat gaagaaatat taaaagaaat taaagaaaaa ccagaattaa aaagatcaat
      361 tataatgatg atgaattatt ttgaaacact tcaaactttt attgaaaata ataggataga
      421 tgaaggtatt ataatggagc attttgcaca tatgttaaaa gatatcttgg aaaggtatga
      481 ttgttactta aatagcgatg atttcaaaaa aaataatccc ttggggctta aaaaacttat
      541 aaaattaaaa aatagatgca atacctatat atcataattt aatttaaaaa ataatgtagc
      601 tatatttaca aacctaaaac taaatatagc tatatatttc tataaaagtt aatcactctt
      661 tatatttatc ttttaaaaaa cattataatt ggcaaaagtt atcatcaaag ttaaaaaata
      721 aaatcaaaaa taaaaataat ttttaaataa attgaagtaa tcttagtcta ttataagatt
      781 ataaaaacca actaaatgtt taagttttct atgtaactat cctccaaacc ttaaagctat
      841 agatagttac atactatttt tatataaaaa gtggttaaag tatgattata tagtgtttta
      901 tagagatagt tacaaggtta aaaaatataa gaatatttta agcaaaaatg taactatcct
      961 agagagtaaa aaacactttt gggatataaa atttaaaatc aaagctcgta tttatccgcc
     1021 ttttaaacag catttaatca gtttttttgg gataaaacgg acattttggg atatttggga
     1081 tattttacgc tttagattag gaaagataaa aagttgtttt tatatgcttt aaaagcctat
     1141 tatttgggat ttttgctaaa attatttagg atagttacat gttctttttt aaaatacccc
     1201 ttacaaattt gatataaaaa atcatacaaa taatgtttaa ttgttgaaaa taaaagattg
     1261 ttttgttcta attgcttaaa atcattttta tcaatatata cacccatatc attacatagg
     1321 tcgtttttta taatttcttg tattatgtct attttttcat gattgatatg ttttctgtct
     1381 aaaattatgg gaatgctaga agttctatca atattgaaat ttttattatt tttaggagta
     1441 ttaagataaa aggtgttatt aatatcttta gaatttgcat aaagtgtaat aggaaaaaga
     1501 tagcgaatat aacctctaaa ttctttaatt ttaaataaat ctaatttatc tttatggggg
     1561 ggggtaaaat taaaatttat agcaagtaaa ttcatggtat cgaaggcctt tgattggcgg
     1621 atttcttcca tatcaagata gtatacattg tctttgttaa aatattttaa taaataagag
     1681 atgataaaaa ctccttgttg tagttcattt atatcgattt taattttatg attttgatga
     1741 gtaagatagt tgatgtaata acgccaatca taagttagat taaattcagg gggatagttt
     1801 cttaaaactt tactccaatc tcttccccag ctatgcttta aaagtcctat tggatctcga
     1861 actccgcaaa taatcttaga attaaaatct aataaagata gatatttatc aaaataaggt
     1921 agattaattt ctgatatatt aatagcatat tgagcaattg tattatcatt tagacacatg
     1981 taattaatac aatatctctc tttgctatca ggtggtaaaa cccaggaggc aaaacaagtt
     2041 acatcgcaac attgattaag gtatcttaaa aatgctgctg ctccaacgcc atgtggagaa
     2101 atatagataa atttatagtg tttaggtagg ggtaaattta aatcccaagc taattctgcg
     2161 caatgtcgac tagaatctat ttctataaaa ttaggattga ttaaaggtgg ataaggatgt
     2221 tttgttgata aatatctatc cctaaattcg ttagaattga gccaagtgca aattgtttca
     2281 atatttttca aaacaaaggt aaaaaatttt tcattattcg aattttttaa agcttgtaaa
     2341 agaatttgag ctagggttgg agttaggtta ttttttatat agagtaaaag attttgcata
     2401 taacctcttt taattgtatt taatttatat ataattcata aatatttaaa tgtcatgaaa
     2461 tttaaatata ttatcaaaaa taaactttaa ttaaagcaat aaaaagttaa aatttgatat
     2521 taaaattttt caaagagtga agttatggag tataaaagat ttaaaaccag acaaatcaaa
     2581 gtaggaaatg ttttaatagg cggtgatgca cccatttcag ttcaatctat gctttttact
     2641 aaaacaagag atatagaagg ttctttagaa caaatcaatc gtctttattt tgcaggagca
     2701 aacatagtgc gtttggcgtg cttggatatg gctgatgcaa gggctttaaa agagattaaa
     2761 gctaaaagtc ctctaccttt aatcgtagat attcatttta atcataattt ggctgtatat
     2821 tgtgctgaat ttatcgatgg cgtgcgtata aatcctggca atataggctc taaagaaaat
     2881 attaaagaag tggtaaaagc atgtaaagaa cggggtatcc ctatacgcat cggtgtaaat
     2941 cacggctcca tagaaaaaca atttagtgat aaatttggtt atggtgtcga tgccatgcta
     3001 gaaagtgcga tgtataatat caagctttta gaggatttag acttttttga tattaaaatt
     3061 tccatgaaga cttcagatgc tcaaaaaact atagaagctt atgagagatt aagaccgctt
     3121 tgtgattatc cttttcactt aggggtaact gaagcaggaa ctaaatttca tagcactgta
     3181 aaaagttcta tagctttagg aaatttactt cttaaaggta taggcgatac tatgcgtgtt
     3241 tctatgacgg gtgagcttga agaagaaatt cgtgtagcaa gagcaatttt gcaagatagc
     3301 ggagtacaaa aaagcggagt aaatattatt tcatgtccaa cttgcggtag gattcaaagt
     3361 gatttgttaa gtgcgattaa aatcgtagag gaaaaaacca agcatataaa agaaccttta
     3421 aacatcagtg tcatgggttg tgtggtaaat gctttaggcg aagctaaggg cgctgatgtg
     3481 gctatagcct ttgggaaaaa tcaaggactt gtcataagac atggtgaagt tgtagctaaa
     3541 ttaaaagaaa gtgaacttgt agatagattt ttagctgaag ttgaagatga ggttaaaagt
     3601 agggctgtaa aagaataaaa gcctaaaagc aaggtttaac cttgctttta gaatggccat
     3661 atcgcttcta taactttact accccaaggt tttcttgtgc ttctatccac ttctccttct
     3721 gttttatata gaattttagc atctgctata tatttactat ctatagtatt gtcttgaccg
     3781 atgtcataag gacgaataac accgcttaat tgtatgattt gcttctctcc gttgattaaa
     3841 agctctcttg aaccttcgat aaaataatta ccatttgata aaattttaat tacacgtgtt
     3901 gaaattgtag tattgaaact ttcatttcta ctttgtgagc ctgttcctgt gtagttgttt
     3961 gaactattgg tttgaaagcc tatattagaa taagcattga ctttattaag agcattagct
     4021 accactcctg aacttcctgt taaagcacct ccacctaaat ttgaggtatt agttctgctt
     4081 gttgctttat tagcttgtgt gctttgagtg gtactttctt gtataacaac tgtaactaaa
     4141 tcatttacat tcatagcttt tttatctgaa aataaaggat tatctccttt gccaaaaagc
     4201 gatcctggcg cactttctat attattactt tgttttggtg caagttcttc tacataagca
     4261 ggtggtttca ttgaaatttg cggatcaacc gttgcagaac aaccaaaaaa tgcaaacggt
     4321 aacacataaa ataaaacttt tttcattttc gtcctttaaa atatgaattt ttatttttct
     4381 ttgttaaaat tagaaaaagc aaagagtgtt ccacatttat aaattcaagg agaaaatgat
     4441 ggcaaatctt tatttgatga gatctagaag tgatgagtta aatactatta ttagtacaaa
     4501 tttgcttaaa aattatagca aaatttacaa aaatatcgca atttattgcc ctgtaatata
     4561 catacatcgc gtccctgttt tacaaggttg gttggaagaa tttaatatca atcaaactgt
     4621 aaaaagcgcc tatggtttta cctttagaga agcaatggag gaatttagca aagatcctca
     4681 taattttttt aatgttattt tagaagaata cgaagagtta aaacgcaaat acgattttgt
     4741 gcttgtaaat agtttttgcg aatttggaat acttgatgga tttgatctta gtataaaatt
     4801 agctaaaaat cttaataccc ctatcgctgc tattattaac gatgaagata aacttatagc
     4861 tcaaaaatat ttcgatcatg ccctagatgg tcgtaattat gttttgatta atgaaaattt
     4921 taattttgaa gaagtacaaa agcttgaaga gtatgatttt ataactccgc atcgttttaa
     4981 atatgaattg attaaacaaa gcgtaaaaaa taaaaaaact gttgttttac cagaaagtaa
     5041 tgatgagaga attttaaaag ccgctgaaat tttattaaaa agtaaagttg ttgatcttat
     5101 tttattgggc gatgaagaaa aaatcaaaca agatgctact agattaagtc ttgatttaag
     5161 tgctatgcaa attatgaatc cacttaattc agaatataat caagaattta cttctattct
     5221 ttatgaaaca agaaaatcta aaggcatgag tttagaagag gctaagatac tagttcagga
     5281 taaaacttat tttggaactt tgcttataca tactggaaaa gctgatgcta tggttagtgg
     5341 agcatcaact actacggctg aaacgattcg ccctgcatta cagcttatta aaactaaaga
     5401 aggcattagt tccgtttcag gaattttctt tatgggactt gaagatcaag ttttagcttt
     5461 tgctgattgt gctgtaaatc caagcccaag tgctgagcaa cttgcaacta gcgcctatgt
     5521 aagtgctatg actgctaaat cttttggact tgaaccaaga atagctttgc tttcttattc
     5581 tagtggtgat agcggtaagg gagaaagcgt agatcttgta aaagaagcat taaagattgc
     5641 taaagaaaaa tatcctgagt taaatataga tggtcctatg cagtttgact gcgcttatga
     5701 tccaaaaact gcagcaaaga aaatgccaaa ttctaagata gcaggtcatg caaatgtgta
     5761 tatttttcct gatcttaacg cagcaaatat ttgttacaaa gcagttcaaa gaactgctaa
     5821 tgctttagca atcggtccta ttttgcaagg tcttaaaaaa cctgttaatg atttaagtcg
     5881 tggatgtttg gtagatgata ttgtagatac tgtaatttta agtgcaatac aagctcaata
     5941 gaaaggaatg ataaatgaaa attttagttt taaattcagg ttcttcatcg attaaattta
     6001 aattttttga taataaaatc gttaaagcca gtggattggt agaaaaaatt ggagagcaaa
     6061 attcaaaggt tgtattaaaa aatactttaa ataatgaaag ttttgaaaga gaattaacaa
     6121 taaataatca cgaagaaggc cttagtatag ttaatgagct ttttaaagaa tcaggaattt
     6181 tagcagattt aaatgcactt gatggctgcg gtcatcgtat agttcatggg ggaagaaatt
     6241 taagcgagca ttgtttagtg gatgattatg ttcttaaaga gatagatagg gttagtattt
     6301 ttgctccttt gcataatcct gcgcatttag caggtataaa aacaatgatc aaagctgcac
     6361 ctagtgttgc taatgtggct atttttgata cagcttttca tcgcactatg cctgattttg
     6421 cttatatgta tgctttgcct tatgattttt atgataagca taatattaga agatatggtt
     6481 ttcatgggac ttctcatgct tatgttagtt ctagagcggc aaaatttctt caaaaagatc
     6541 aaaatgaatt aaatgtcatc tctgctcatc ttggaaatgg cgcaagtgta tgtgctatag
     6601 aaaaaggtaa gagtatggat acttctatgg gctttactcc acttgaagga cttattatgg
     6661 gaacgcgttg tggagattta gaccctgcta ttttaccttt tgttagtcat cttaagggtt
     6721 taactataga agaaatagat acactgatga ataaaaaaag tggagtatat ggaatttgcg
     6781 gttataatga ttttagagat atagaaagag agatagaaca aggtaatgat aaagcacgct
     6841 tggctcttga tatgttttgt tatcgtcttg ttaaatatat aggatcctac tttgctgtgt
     6901 tgccaaaaac cgatgctatt atttttacag gtggtatagg agaaaatgat agtttggttc
     6961 gacaaaaagt atgcgagaga ttagttcatc ttggtatcga gttagatttt gaacttaaca
     7021 aacaaaggat ttcgggcgaa agaatgataa atcatgcaaa ttctaaagtt aaagtgcttg
     7081 ttattcctac agatgaagaa ttagaaatcg ctagaattac agaagaactt atcggtaaaa
     7141 attaaatttt aaaaactata taaatctttc atttatatag tttttagcaa ggttatatat
     7201 tcactttgct tttcatttaa aactttaaaa gtgcttatca tgtaagaaaa ttcatcatca
     7261 cttaaaccat aaagttcttt aaccaataaa tcattttttg ctcttaagat attataagcc
     7321 tttttagttt ttggaatttc ttcatttttt atattaaatt cttgttttag ctcatcaaaa
     7381 tgacgatttt gatcattgta aagctgtaaa agcaaagcat ttttagcgag ggttttataa
     7441 atttcattgt tttgaatttc ttcatcactt ggttgaggca ggggaattct ttctaaataa
     7501 gatttgctta cattgatttg taccatattt cttatgataa aatcaaccac taaagaatta
     7561 aacaaagcta aaacaaataa aattctttca taaggcacta tatccatgca aattacatca
     7621 tcttttaaaa catattgttt tggaatgtta ctataagtac tatcagctcc accgcaattt
     7681 tttggcaata aagaagctat caaagttctc tcatttgtat cacttgcaat ttttctatat
     7741 ccaagtctaa aaaattctct atcgtatttt atcaatttag gatttaattc tttcccagta
     7801 gcttttttag ctctataaag ttctttactt tttaaatgct catccaattt agccttttct
     7861 aaaaaataag tagtttggct aaaatttgca ttaaattgat gtatcatttt accttcatat
     7921 aagggtaaaa gtccttccct aaactcttct ataaacaaat ctttatcgtt tgtcatatca
     7981 agttctcttc taaaatctat ataatcaaaa gacaaatttt gaaaagcatt ataagatttt
     8041 cttagaattt ctaaagcctg tttgtctttt aactccatta aggctaggtg agttgggctt
     8101 agctttttga tatcttttaa acttagagtt aaaatttcat ctttgttttt taatgagttc
     8161 atatctgttt tataaaacat cattttgatt ttatgagtgt gatttgcttg tgtgtttttt
     8221 acttgcataa gagcaaattt atagcttcta tgaacatcta taaagatagc tttattgttt
     8281 tcaaaactat aaaaatattc taaagtttta ttttctaaaa tttcttttct taaagttaag
     8341 cttccatctt caaacatcaa agcactagga agcacataag ctaaatttcc atcttgtttt
     8401 aaaagagaaa gatttttttc tacaaaaaga cgaaacaaat ttccatctcc actgccttta
     8461 tttaaaggat aggctttttt ataatactcg cttaaatcat ttatatatgc tttttgtttt
     8521 tcgtaatttt gctttatata atctttcgct agcaaattat cttgaatttc ttttttcttg
     8581 ctagcgatta agcttctata atcgctttta tattgcggaa agaaatcact atcactaaat
     8641 ttagttttat cccaaggtgg attacctatg atgatatcaa agcctttaaa gacttgattt
     8701 tctacgattt caggaaattc taactcatag ttaaagaaat taaattcttt ttgatatttg
     8761 ctaatgatag cttttgcttg ttcattttgg cttaaatttt gtatatcatc ttgacttagg
     8821 gcttttagaa tttgtaattc ttctttgttg acaaaatgaa gcgtgttgat atagtttaga
     8881 tataaattta gtttattaag ttttggtgtg atttcatttt gatagatttg tttagattgt
     8941 ttgatttgtt cttcgttggt atcttttaga ttgtcaagtt tttcaaatac ttcttgtaaa
     9001 atttcaaatt cttgtgttat ggaatttgta aaaaggttgc ttgagttttg ttttatcaaa
     9061 tctttaaaat cacttaggtt agaatttatc aaagcattgc cgcactttat gtggtgttct
     9121 ataaaagaaa gtggggttgt aaagataaaa ctatctatcc aaaggctaag tttagtaagc
     9181 tctatgctaa aagggtttaa atccactcca taaataatgc gttttagtaa aagtcgtttt
     9241 aaaatatcac tctcatctac ttcatagtct tgcacaaaat cttttatatg atttaaaata
     9301 ttttcttttt cttcttcgta aagttctttt aaatttgtaa aatgatcaaa atctgataaa
     9361 acaatgtgtg taatagcgtt taaaactcca actaaaaaat gtccactacc gcaagcattg
     9421 tctagtattt taaatttcaa aatattttca ttgtttagtt tgtcttttaa agcactttgg
     9481 attaaaaaat tagctatgga ttgaggtgtg taaaagcttg cgcttgcttt tcttgagttg
     9541 ctagtatttt taaggtaaat ttgtcctttt ttgtaaaagg tgtatttttc tacttttttt
     9601 gatttttcta aaattttgaa atcataatta tcaaaataac attctatttc ttttgatttt
     9661 tctttatagc ttacatagta aatatcttca tttgctattt caaaaaaata agaaagcaag
     9721 ccttcataaa tcgtgcctaa atgttctaca cttaaagttt tgtaatctct tttaaagctt
     9781 agatttttat ctttaaaatt taataattgg tttaaaatga attttaaatc tttatcgtta
     9841 aagatttttg gtgtacttaa aagagcggtt ttgctctcat caaacaaacc gccattaaaa
     9901 acaggcatgt caaaattgcc tttgcctttg ttgtaaatgt tgaaaatatt ttcaagttct
     9961 ccaaagccac cacttgagct ttcatcttct tgtaaatttt caagtagggt tctaagactg
    10021 attttacttt taaaatactt atgtttttct agtataattt caaatttatc ttcaaaataa
    10081 gcaataaata aaagcctaaa gataaaatat aaagaatttt catagattag ttttaaatcc
    10141 gcctttgttt tattgtaaat tctagagcct atgaattcaa ataaagattc atttccattg
    10201 gttccgtaaa tgatagattt taaatcatct tctattttga tttttgaaag tttattgttt
    10261 tgtagagtta tttctaaatg atcttctttt tctgtgaaat taaaagcgct aaatacacta
    10321 taaaaatacg caaaagcttc aatattttga tcttcaatga ttttttctag attgatttcg
    10381 taaaaaactt tgtttgaatt cagtatagaa ttatcataaa aacgccaaaa tctaccattg
    10441 gttaaaaaac cataattttt cttaagattg cctagatatc ttagaatttg aaagtgaggg
    10501 ttgtctttta cttttttatt gtctatttct atattataag cttttgactc taaaatgatt
    10561 gtgaaatcat tgcttgattt ttttgtttct ttgtctaaat tttcgtattt tgattttaat
    10621 ttgtcattgc taaaaagtag aaaatcaggt ttttccaatt ttccttgtat gattttttca
    10681 tcttgtctta caaagcacca ccctaaaatt tctaatactt ttgatataaa ttcatcttca
    10741 aattgatgtt cgttttgttt tataaattta
//
LOCUS       DARGBD010000055        10405 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.055, whole genome shotgun sequence.
ACCESSION   DARGBD010000055 DARGBD010000000
VERSION     DARGBD010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10405
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.055"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..387
                     /locus_tag="SFZ04_001170"
     CDS             <1..387
                     /locus_tag="SFZ04_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEG8065443.1"
                     /translation="FVSEFHQGLKRSFSYLDEDRKKLYDFENIKEIQGLLICPKNESL
                     IARAVKMKGLLLSTAQRKELLKGDCVLGGKIALAYKNEQAIVFEYETCQKLPKNFKEE
                     CRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(370..1083)
                     /locus_tag="SFZ04_001171"
     CDS             complement(370..1083)
                     /locus_tag="SFZ04_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HEG8065444.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLSYQRILKLKAKA"
     gene            complement(1085..1774)
                     /gene="dut"
                     /locus_tag="SFZ04_001172"
     CDS             complement(1085..1774)
                     /gene="dut"
                     /locus_tag="SFZ04_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HEG8065445.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISNPTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            complement(1810..2373)
                     /gene="ciaI"
                     /locus_tag="SFZ04_001173"
     CDS             complement(1810..2373)
                     /gene="ciaI"
                     /locus_tag="SFZ04_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HEG8065446.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSISYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDKNHQNAIMNNFTNKLSDLLKQNQTNDKDINTSMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            2448..2855
                     /locus_tag="SFZ04_001174"
     CDS             2448..2855
                     /locus_tag="SFZ04_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065447.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQKKIYFSKFPFAI
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            2927..3709
                     /locus_tag="SFZ04_001175"
     CDS             2927..3709
                     /locus_tag="SFZ04_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8065448.1"
                     /translation="MLNVIHALFFRELKTRFGANRHLGYLWVVGEPMSITLAITVIVT
                     IIREYHHQVMPEGISIFMFLISGIMPYFMFRSIVTQLMNGTQANLALFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRFDVFPVHLLGVLFCIFLLMCSAFALGICFA
                     IIWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLMPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            3706..4368
                     /locus_tag="SFZ04_001176"
     CDS             3706..4368
                     /locus_tag="SFZ04_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8065449.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGGNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGQE
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHDVAEIKEWCDKIIYMKNGQIAVYDDVDEGIAVYQG
                     KA"
     gene            4368..5486
                     /locus_tag="SFZ04_001177"
     CDS             4368..5486
                     /locus_tag="SFZ04_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEG8065450.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSSTSTANEDLNYLKGYIESSDMLRILDEKIKLKDL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNGLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            5488..7146
                     /locus_tag="SFZ04_001178"
     CDS             5488..7146
                     /locus_tag="SFZ04_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEG8065451.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVVQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKRGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            7156..8103
                     /locus_tag="SFZ04_001179"
     CDS             7156..8103
                     /locus_tag="SFZ04_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEG8065452.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKTSDKPRFDFRAKEIMSTNPKVVDA
                     DAMASEAEEIMLKHKIKEIIVGKEERVIGIIQLYAIGNV"
     gene            8103..9731
                     /locus_tag="SFZ04_001180"
     CDS             8103..9731
                     /locus_tag="SFZ04_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019260274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG8065453.1"
                     /translation="MALLSVIIPFGLSKERPYIEERVIEKAKYFKSDENIEFIFVEGY
                     SSKNHELKNFIQANHHIYLKDMEQKAFSQGKCRNLGASCAHSNVLLFLDVDCYISLDN
                     FGKILKLIQIKNISQNINALIVLPVVYLNKEANEKLKQYNDKFWDILIQEDLFTARNT
                     WVKFFAPSSTSSIVINKHQFLRLGGNDENFIGHGYEDFDLFARILKACVSFEKMPTNL
                     SYDARNWNFFNFKGFRSWFSLLGYEACFYGIYMYHFYHIEPNQNAYMQNKDKNHQFFY
                     KHLKNIKKHDLKPLQVFKAKGEKVLMLFKDQNYDFKDISVYVGEIIYKNISDFFIDKE
                     LKYELLLNFLQQEKITKIFLDASIKLQFDDIDYCDIFYFQKGILPHSWFFTKNLDLDY
                     KQDLNLSEQKLYQVKKYFLTLKEDEKKVILDLLGQNNDDKCDLYEMLYYLINELYSFE
                     HEGIFYQIIIDKEKILMAQKHDKSFYPLRSFVYKPYLHELKSIRPFSFLMKILGLEYL
                     GAMISHTKFYRLARKLFFNPKGFFEDLRIKKARN"
     gene            9733..>10405
                     /locus_tag="SFZ04_001181"
     CDS             9733..>10405
                     /locus_tag="SFZ04_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8065454.1"
                     /translation="MLLKAKYKKNISFFFKSLLISLQNFLKQFKPKKYKAYNKYVIVS
                     AVYNVEKYLDDFFKSIINQRLDFKNNIHLICVDDGSTDNSANIIKKYQKKYPKNIIYL
                     YKENGGQASARNLGLKYLKENNLNIPWVTFTDPDDFLDRDYFYEVDSFLKNQNNIAMV
                     ATNIIFYREKRKILYKDTHALNFKFKKHKSVYDNIKLNENIQLSVASCFLKCDYLKDT
                     FFDENL"
BASE COUNT         3711 a         1262 c         1760 g         3672 t
ORIGIN      
        1 tttgtgagtg aatttcatca gggtttaaaa agaagttttt cttatcttga tgaagacagg
       61 aaaaaacttt atgattttga aaatatcaaa gaaattcaag gacttcttat ttgccctaaa
      121 aatgaaagct tgattgctag agcggtgaaa atgaaaggtt tgcttttaag cacggcacaa
      181 agaaaagagc ttttaaaggg tgattgtgtt ttaggtggta aaatagcact tgcatataaa
      241 aacgaacaag ctattgtttt tgagtatgaa acttgtcaaa aattacctaa aaatttcaaa
      301 gaagagtgta gaatagctaa aattccaaga cttttaagag cttatttata caatcacaaa
      361 atcgatattt caagccttag cttttagttt taaaattctt tgatagctta aatgtgtgag
      421 aaaaatcaca aaaaatactt gcaaaaaaag tcctaaaagt ggtactgatg agagtagata
      481 aaaacaaaga gtgctaaatt taaactctaa aggcgaaaaa tcagaatgaa aatttttaaa
      541 actttctttg tctaaaatcg tgcttgtaac atcaatcatt aaaagtttgt gaaagagata
      601 ataaaaagca agataatata caaaaatatt tataaaaggt aaaaataaag ccaaggtgca
      661 aagcaataaa atccctataa attttataaa tattttaaaa atttcaaaga tagtttttaa
      721 ggttgaaact tcgtttgtat tatcataatg gtaatatttt tggttgattt ctttagcgat
      781 aaaaggagta agaaaagaag tgataaaaag ggctaaaaaa accgaagcaa aaacaacaat
      841 aaaacctgaa aataaaaaac ttatgatggt gattaaaatt tgtacaaaat gaagagcata
      901 aaaccacgcc caaaacgaat cttctccaac gctaaataaa gaattaaaat aatcaagcaa
      961 ggccgaaaag ccaagtactc ctaaaaaaag catcagtata aggctaaaaa tcaaaggaat
     1021 taaggcaaat tttaaaaatt taagacttaa aaaatctttg attgcaagtt ttaaaatatc
     1081 caaattatgc ctttttgtag cattcttcta gttttttata aatagtatca aaatcaagct
     1141 cttgttctaa aatttgagct aaaacttcat tgtcttcttt gccattccaa gtttttttat
     1201 agctaccatc tttgtaacca ttgttttgtc taaaaatatt taaaacattt ttacctatgt
     1261 aggtcttata aagaatttca agatttagcc cacatttaat agctagagta aaataggttg
     1321 aaagtaattc tccaagatta aatccaaaac cactgcattt atggataata agctctatat
     1381 catttaaaat gccataaata tcaccctcat tagggtattc ttcttctttg caaaaatctt
     1441 gaaacacgct tacagcatta acttctgtgg ctatagcttt gaaatcttta ttgtttttat
     1501 cgcgatactc ttcaagtaaa agacttaaaa taaaatgcca aatatcgaca atctctatac
     1561 gcacattttc ccaatttgtc ggatttgaaa tgtttttcca atgtttccat gcaaaagagt
     1621 ctataagttc tgcacattcc atataaatac agcgtctcca actgatcagt tttccttctt
     1681 tggtgtagcc attttcccaa tttaagccgt ttgtttcgtc gttaagtttt tgttggagtt
     1741 tgagcatatt ttctaaaatt tcgatatttg tcatttaaaa ctccttgata atttttaata
     1801 ttatatgatt taagcgtaaa gatttaaact atcatctgtc ttatcttgat tttccttggc
     1861 tttttcttgt tgtttttcaa gttgtttttt catttgttct aaaacttcat caagaagttt
     1921 tttgctatct tcaagcatag aagtattgat atctttatca tttgtttgat tttgttttag
     1981 caaatcactg agtttatttg taaaattatt cataatagca ttttgatggt ttttatcatt
     2041 tggagttggt agaacatttg ccatttgcat agctgattcg ataatttcct ttggctttaa
     2101 ctctccaact ttagaatttg ctaaaaaatc tttgatcata ggttcaactt ctttcatagc
     2161 atttttaatc tcatcaagat cattttgtgt gagtttagag ccttcaaaag taaagctaaa
     2221 accatactga cgcttaagat taagagtttt accttcttca ttatttgcat aacttatgct
     2281 ttgattgtca tacatagata aggctaagtg tttgccactt tttgttgtat aatccatcga
     2341 aaaactttgg tttttactag catcaatttg catttcttcc ccttatattt atagtttaaa
     2401 tcaaaaatcg gttattttta aaaatatttt agtataattt ttataatatg gatgaaagaa
     2461 ttttagaatt tataaaaaat gagcagcttt tatcttgggc tatgattgat gaaaaaggtg
     2521 tttatacggc tagtgctttt tatgcttttg atgaaaagaa tttagctttt attatcgctt
     2581 cccatgaaga tactaagcat ataagattag ccagtgaaaa ttcaagtata gcacttaata
     2641 tagccaaaga aagtaaaata gcctttttaa aaggtgtgca agctaaggcc gagtttaaaa
     2701 tggcaagtaa ggagcaaaag aaaatttatt tttctaaatt tccctttgct atacttgata
     2761 aaagtgcaaa aatttatgct ttagagcttt tttggcttaa atttactaac aatgctttag
     2821 gacttagtaa aaagcttgag ttttgtaaaa aataaatttt tatgattttg tttaaaaaaa
     2881 tgagttatga ttatagttta tgtaaattgt taggtataga aaataaatgt taaatgtaat
     2941 tcacgcttta ttttttagag agttaaaaac tagatttggt gctaataggc atttgggtta
     3001 tctttgggta gttggagaac caatgtcaat aacacttgct attacagtaa ttgttaccat
     3061 tataagagaa tatcatcatc aagttatgcc tgaaggaatt tctattttta tgtttttaat
     3121 ttcaggtatt atgccttatt ttatgtttag aagtatagta actcagctta tgaatggtac
     3181 tcaggcaaat ttggctcttt ttgcttataa acctgtaaag cctatacatg tatttattgc
     3241 tagaactttg cttgaatttt gtatttattt tgtgattttt atcactgtgc ttttttttgc
     3301 aggatggttt tttagatttg atgtattccc cgttcattta ctcggagttt tattttgtat
     3361 ttttttactt atgtgctcag cttttgcttt ggggatttgt tttgctatta tttggcattt
     3421 tgtagagcct ttaagaactt tattagctta ttttagcata gtgttttatt ggagttccgg
     3481 gattatattt cctacttggc ttatgccaag acctttactt gatatatttt attataatcc
     3541 tttgcttcac ataatggagc ttttaagatt taattttttt gagaattatc ctttgcaaga
     3601 tgaatatagt tatttttatg ctatattttg gattttactt gttttattta taggactttt
     3661 tatttactac tataatagac aagctctaac ggcggcaaaa aaagaatgat aaagctaatt
     3721 aatctaacta aatcttatcc tttatttagc ggtggaagac attatgtttt taaaaatttt
     3781 acttttgaat ttcctgaaaa ttgtagcata ggattgatgg ggggtaatgg tgcaggtaag
     3841 tccactctca tgagactttt aagcggggca gagcttcctg atagtggtaa gataattact
     3901 aataaaaaat tatcctggcc tttgggttta aatggagctt ttcaaggttc tttaactgct
     3961 agggataatg ctaaatttgt agctagagta tatggttata aaggacaaga acttcaagaa
     4021 aaagtaaaat tcgtagaaga ttttgcagag cttgggaaat tttttgatga gcctatgaag
     4081 acttattctt cgggaatgag tgctagaata gcttttggac ttagtatggc ctttgatttt
     4141 gattattatt taatcgatga agctggagct gttggagatc ctgcttttag agaaaaaagc
     4201 gtaaaattat atagggaaag attaagcaaa tcaaaagtga ttatggtatc tcatgatgta
     4261 gctgaaatta aagaatggtg tgataaaata atttatatga aaaatggaca aattgcggtt
     4321 tatgatgatg tagatgaagg aatagctgta tatcaaggaa aagcttaatg gaagaaaata
     4381 aaactttatt agaaaaaatc aaagatttaa gcatatttga ttcttttaaa attgtttggt
     4441 ttataatgat ttttgttgtg atttattata cattgattgc agcaccaaga tatgtaagca
     4501 cgatgatttt agatgttaga tcaacaagtg gagaaagtgc tcaaacaagt ggaattttgt
     4561 ctttgcttag tagcacttct acagcaaacg aagatttaaa ttatctaaaa ggttatatag
     4621 aatcaagtga tatgttaaga attttagatg agaaaatcaa acttaaagat ctttaccaag
     4681 aacaacatat agatttgcct tttaaaattt gggattcaag ctcaatagaa tcttatctta
     4741 aatattacca agcaagagtt aaggtgcata cggatgaaac tactaagctt ttgcaggtag
     4801 aagtagaagg ttttacacct aaatcagctc atttgattgc tcaaactatt atgcaagaaa
     4861 gcgaaaagtt tatcaacgaa atctctcata aagcagctag agaacaaatg gcttttgctg
     4921 aaaatgaagt acaaaaatac aaagaacgat atcaaaaagc acaaaatggt ttgattgctt
     4981 ttcaaaataa atatggggtt tttgatccct tgaaacaagc tgaagctaaa gcaagtttgg
     5041 ttgcgcaaat tgagactaat ttagctcaaa aagaagctaa acttttaact ttacaaagct
     5101 atatgaatga tgcagcacct gaagtagtag cacttaaagc agaaattgaa gcgattaaaa
     5161 aacagctttt aagggaaaaa tctaaaattt cagctaacaa ttcttctcaa aagcttaatg
     5221 atttggctgc taaatttcaa gatctaacta tagaagctac ttttgcgcaa aaagcttatg
     5281 aagcagcttt aaaagcttat gaaagtgcta gaatagaagc attaagaaaa ataaaacaac
     5341 ttgtcatcat tcaaagtcca gatattccag aaagcgcaaa atatcctgaa agaatttatg
     5401 atattttaac agcatttatt gtattatctt tgatttttgg gattgttaaa tttattaaaa
     5461 tgataataga ggagcataag tattaaaatg aaaaaaatat taattttact ttttagttgt
     5521 attttatgtt ttggagctgt ggatgtttca caaatcattt cagcagagga tcaaggttct
     5581 actacaacta gcatagatca aaatttaagc tcaaattatg atatagcaaa taaagaaaat
     5641 aatcttacaa aaattcatca aattttagta tttggcgctc atctttttaa tggaaatttt
     5701 aaaaattaca atcaaagagt ttataaccca gattataaga tcgcagttgg tgatcaaatc
     5761 agtcttaaaa tttggggagc tgttgagttt tcgcaagttt tagtggtgga ttctcaagga
     5821 aatattttta tccctaaagt aggagctgta aatttactag gtgtgaaaaa tagcgccctt
     5881 gtaagtgtta taaaagcacg tgttaataaa atctataaaa gcaatgtttt tgtttatgca
     5941 gatatgaatg cttatcaaaa tgtcagtgtt tttgtaacag gaagcgttaa tgctccagga
     6001 ctttatcaag gacttagttc ggattcagtg gtccagtatc ttgataaagc agggggtata
     6061 aatttagaat atggaagttt tagagatatt caaattttgc gtaataacag cgtgataaaa
     6121 aatattgatt tatatgattt tttactaaag gggcaaatgg atctttttcc ttttagaagt
     6181 ggagatgtta ttttagtagg aaatgttcaa aattacgctt ttgttaacgg tgatgtgcaa
     6241 agaccttttc gttttgaact ttcaaatgat attaaaactt tagctgactt agctagagta
     6301 tcaggtgcta aacctatcgt gactaatgct atcgtaaaaa gttatggtga agatcataaa
     6361 cttgatgtca gtgcttataa taaaatgcaa ttttcaaaag ttttacttag aacgggagat
     6421 gaggtagaat ttcaccctga gtatgtttct gaaaatataa ctataagtgt aaatggcgag
     6481 cataatggtt taaaaacttt agttgtgggt aaaggaacga ctttagaaga tatttctaaa
     6541 ttaattaaag ctaatccaca atcaaacatg caagctttac aagtgtttag aaaaagtgta
     6601 gctagaactc aaaaagaact tatcaatgct cagcttaaag agcttgaaac tctagcttta
     6661 actagtggtt ctgttacagc tcaaggtgca gctataagag ctcaacaagc aaaaacgatt
     6721 ttagaattta tccaaagagc taagcaagta gagcctaagg gtcaaattgt cattgataat
     6781 ccaaagtcct ataattcggt tattttagaa gatggtgata ctattaatgt accaagtaag
     6841 aataatctca tcatagttca aggtgaggtt tctttacctg gagcttttgt gtatgataag
     6901 ggcaaagatt taagatatta tatcaatctt gcaggaggtt atggagaaag agcggatact
     6961 tcaaaagttt tagtgatacg aagcaatgga aaagctgaaa aatatcatag tggtatagat
     7021 atgaaacgag gcgattctgt gttggtattg ccaaaagtag atagtgagaa tttgcaaatt
     7081 ttttcaatgt taactcaaat tctttatcaa attgctattg caaccaatgt tgtacttaat
     7141 ctttaaggtt taaaaatgaa tactcttgaa atagccaaag aagtctttga aaaagaagca
     7201 caagctattt tggatttggc taaaaattta gatgaaaatt ttaatcaagc tgtgaatttg
     7261 atgctaaata ccaaagggcg ttgcatagtc agtggaatgg gtaaatcagg tcatataggt
     7321 gctaagatag cagctacttt agcaagtaca ggaacgccaa gctttttcat ccatccagga
     7381 gaggctttgc atggagatct tggaatgcta actcctgaag atgttttaat tgctatttca
     7441 aattcaggag aaactgaaga aattttaaaa atcattccag ctataaaaaa gcgtaaaatt
     7501 ccacttatag taatgtgtgg taaaaaaaat tccacccttg taaagcaaag cgatatattt
     7561 ttaaatatag ctgtggaaaa ggaagcttgt cctttgcagc ttgctcctat gtcttcgaca
     7621 accgcaactt tggttatggg ggatgcttta gctgctgctt tgatgaaggt aagaaatttc
     7681 aagcctgatg attttgctct ttttcatcca gggggaagtt tgggacgtaa gcttttaacc
     7741 aaggtaaaag atcttatggt ttcaagtaac cttcctatag tgcatcctga tactgaattt
     7801 aacgatcttg ttgatgtgat gactagtgga aaactagggc tttgtgtggt acttgagaat
     7861 gaaaaattag tgggtatcat cactgatggg gatttgcgtc gtgctttaaa gacaagcgat
     7921 aaaccaagat ttgattttag agctaaagaa atcatgagta caaatcctaa agtagtcgat
     7981 gctgatgcta tggcaagtga agcagaggag atcatgctaa aacataaaat caaagaaatt
     8041 atagtaggga aagaagaaag ggttataggg attatccagc tttatgctat aggaaatgtt
     8101 taatggctct tttatctgtt attattcctt ttggcttaag taaggagcgt ccttatatag
     8161 aagaaagggt tattgagaaa gcaaaatatt ttaaaagtga tgagaatata gaatttattt
     8221 ttgttgaagg atattcatct aaaaatcacg agcttaaaaa ttttatccaa gcaaaccatc
     8281 atatttatct taaagatatg gagcaaaaag ctttttctca aggaaaatgc agaaatttag
     8341 gagcaagttg tgcgcattca aatgttcttt tgtttttgga tgtggattgt tatatttcct
     8401 tggataattt tggaaaaatt ttaaaactaa ttcaaattaa aaatatttct caaaatatca
     8461 atgctttgat agttttacct gtagtgtatc ttaataaaga agctaatgaa aaattaaaac
     8521 aatacaatga taaattttgg gatattttga tacaagagga tttatttaca gcaagaaata
     8581 cttgggtaaa attttttgcc ccaagttcta cttcaagtat tgtgataaat aaacatcagt
     8641 ttttaagatt aggcggaaat gatgaaaatt ttattggaca tggttatgaa gattttgatc
     8701 tttttgctag aattttaaaa gcttgtgtga gttttgaaaa aatgcctact aatttaagtt
     8761 atgatgctag aaattggaat ttttttaact ttaaaggttt tagatcttgg ttttcattac
     8821 ttggttatga ggcttgtttt tatggaattt atatgtatca tttttatcat atagaaccca
     8881 atcaaaatgc ttatatgcaa aataaagata agaaccatca gtttttttat aagcatttaa
     8941 aaaacatcaa aaaacacgat ttaaaacctt tgcaagtttt taaagccaaa ggtgaaaaag
     9001 ttttaatgct ttttaaagat caaaattatg attttaagga tattagtgtt tatgtgggag
     9061 aaatcattta taaaaatata agtgattttt tcatagataa agagttaaaa tatgaacttt
     9121 tgttgaattt tttacaacaa gaaaaaatca ctaaaatatt tttagatgca agtataaaac
     9181 tacaatttga tgatatagat tattgtgata ttttttattt tcaaaaaggc attttacctc
     9241 attcttggtt ttttacaaaa aatttagatt tagattataa acaagatttg aatttaagtg
     9301 agcaaaaact ttatcaagtt aaaaaatatt ttttaacttt aaaagaggat gaaaaaaaag
     9361 tcattttgga tcttttaggc caaaataacg atgataagtg tgatttgtat gaaatgcttt
     9421 attatttgat taacgagctt tatagttttg agcatgaggg aattttttat caaatcatca
     9481 ttgataaaga aaaaatactg atggcacaaa aacatgataa aagcttttat cctttaagat
     9541 cttttgttta taaaccttat ttacatgagc ttaagagcat aaggcctttt tcatttttga
     9601 tgaaaatttt aggtttagag tatcttggtg ctatgatttc acatactaaa ttttatcgct
     9661 tggcaagaaa attgtttttt aatcctaagg gattttttga ggatttaaga attaaaaagg
     9721 ctagaaattg atatgttgtt aaaagcaaag tataaaaaaa atatatcttt cttctttaaa
     9781 agtttgttaa tttccctaca aaatttttta aaacaattta aacctaaaaa atacaaagcc
     9841 tataataaat atgtcatagt ttcagcggtt tataatgtgg aaaaatattt agatgatttt
     9901 tttaaatcta taattaatca aagattggat tttaaaaata atattcatct aatttgcgtt
     9961 gatgatggtt ctactgataa ttcagctaat atcattaaaa aatatcaaaa aaaataccca
    10021 aaaaatatta tctatctata caaagaaaat ggtggtcaag caagtgcgag gaatttgggt
    10081 ttaaaatatt taaaggaaaa taatttaaat attccttggg taacctttac tgatcctgat
    10141 gattttttag atagggatta tttttatgag gtagatagtt ttttaaaaaa tcaaaataat
    10201 atagctatgg tggctacaaa tattattttt tatagggaaa aaagaaagat tttatataaa
    10261 gatactcatg ctttaaattt taaattcaaa aaacacaaaa gtgtttatga taatataaaa
    10321 ttaaatgaaa atattcaact ttcggttgca tcatgttttc taaaatgtga ttatcttaaa
    10381 gatacttttt ttgatgaaaa tttga
//
LOCUS       DARGBD010000056        10368 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.056, whole genome shotgun sequence.
ACCESSION   DARGBD010000056 DARGBD010000000
VERSION     DARGBD010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10368
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.056"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..645
                     /locus_tag="SFZ04_001182"
     CDS             <1..645
                     /locus_tag="SFZ04_001182"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEG8065455.1"
                     /translation="YNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNFLYNY
                     TITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKLHLVF
                     TNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVDFQGE
                     QQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL"
     gene            724..924
                     /gene="rpmE"
                     /locus_tag="SFZ04_001183"
     CDS             724..924
                     /gene="rpmE"
                     /locus_tag="SFZ04_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEG8065456.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            927..1763
                     /gene="rsmI"
                     /locus_tag="SFZ04_001184"
     CDS             927..1763
                     /gene="rsmI"
                     /locus_tag="SFZ04_001184"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEG8065457.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQDWV
                     KF"
     gene            1765..2448
                     /gene="rlmB"
                     /locus_tag="SFZ04_001185"
     CDS             1765..2448
                     /gene="rlmB"
                     /locus_tag="SFZ04_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEG8065458.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            2441..3379
                     /locus_tag="SFZ04_001186"
     CDS             2441..3379
                     /locus_tag="SFZ04_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065459.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLSGNNVVVIDNNK
                     AQETNQTESVLPSQNTSLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTLKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPVGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            3373..4179
                     /locus_tag="SFZ04_001187"
     CDS             3373..4179
                     /locus_tag="SFZ04_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065460.1"
                     /translation="MVKKIIILTFWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLKLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVFDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            4191..5393
                     /locus_tag="SFZ04_001188"
     CDS             4191..5393
                     /locus_tag="SFZ04_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEG8065461.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDNYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            5397..6644
                     /locus_tag="SFZ04_001189"
     CDS             5397..6644
                     /locus_tag="SFZ04_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEG8065462.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYKLLSKDEIYT
                     KYYLRVKVEDKIGILSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            6644..6982
                     /locus_tag="SFZ04_001190"
     CDS             6644..6982
                     /locus_tag="SFZ04_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEG8065463.1"
                     /translation="MGVKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDIIAK
                     KDEILHFIEVKFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIKND
                     VIQFCENISF"
     gene            7039..7353
                     /gene="trxA"
                     /locus_tag="SFZ04_001191"
     CDS             7039..7353
                     /gene="trxA"
                     /locus_tag="SFZ04_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEG8065464.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            7487..8425
                     /gene="trxB"
                     /locus_tag="SFZ04_001192"
     CDS             7487..8425
                     /gene="trxB"
                     /locus_tag="SFZ04_001192"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEG8065465.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMTPWNEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(8463..10244)
                     /locus_tag="SFZ04_001193"
     CDS             complement(8463..10244)
                     /locus_tag="SFZ04_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HEG8065466.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAVVLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDNDDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSSDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNINEANRFGWIVEINPFDAK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFISKHKYKKGVDTSKI
                     LDEGTLYVGQFNGNVGDFKGQGKWIALEYGKNGLDEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANLRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
BASE COUNT         3803 a         1421 c         1718 g         3426 t
ORIGIN      
        1 tataacaagc aagctggaga agagtttata caacttcaag gtgaaaactt taaccattta
       61 aaagtaagaa gagtaaagga aaattcggag ctaaatctta gaaatttaca agataatttt
      121 ctttacaact atacaatcac aaatttaaca agaaattctt gcactttaaa atttttaaac
      181 aaaaaatcac aaaatataaa acaaagtgaa ttaaacttag ccttagccat tatagatatt
      241 aaaattttag aaaaaactct acctttctta aatgaacttg gagtaaaaaa gttacatttg
      301 gtttttacaa atttttcaca aagaaatttt aaaatcgatt tagaaagatt tgaaaaaatc
      361 attatttctt cttgtgaaca atgcggtaga aatactaaaa tggatttaat tatccaccaa
      421 agcactcaag aatttgttca aaaatttcca aatgcaatta tggttgattt tcaaggagaa
      481 caacaaagtc atttcgatga aaaagaatta tattttatag gtcctgaagg tggatttaac
      541 aatgatgaga gattattgtt taaccggaaa atctctctta aaagctctaa tattctaaaa
      601 agtcaaacag ctattatagc tatagcttca aaaattttgc tttaactttt cttaaattaa
      661 tctctttttt atgttaaata atttataatc acggcttatt gttttaattt ttaaggaaaa
      721 ctaatgaaaa aagaaattca cccagaatat gtagaatgca aagtaagttg tgcttgtgga
      781 aatactttta caacaaagtc aaacaaagca gaattaagag tagatatttg ttcaaattgc
      841 catccttttt ttacaggcag tgaaaaaatt gtagatgctg caggtcgtgt agagaaattt
      901 aagaaaaaat acgcaatgca ataattatgc tttattttat tcctactccc ataggaaatt
      961 taagcgatat ttcttttaga gccttagaac ttttaaagac ttgcgatctt gtgttttgcg
     1021 aagatacaag agtaagtaag tctttgattt cgttattaaa taccaaattt cacactgata
     1081 tacatatttc taaatttata gccttacact cccataatga aaaagaagtt ttagcaagta
     1141 ttgatttaaa gatatttgaa aaaaatgtag cttatttaag cgatgcagga atgccaggga
     1201 ttagtgatcc tggcaaggct ttggtagaat ttgcacaaga aaataatatc acctatgaaa
     1261 ttttaccagg tgcaaatgca gccttagttg ctcttgtaag ctcagcattt tgtcaaaaag
     1321 aatttatctt tattggtttt ttagcaaata aaggcaaaga aagacaaaaa gatatagaaa
     1381 aaattttaaa ctttccttat ccaagtatta tttacgaatc ccccaagcgt attttatctt
     1441 tagtagaaca gattatgatt ctagacagcc aaagagaaat ttttttgatt aaagaaatca
     1501 gtaaaaaatt tgaaaaaaaa tttaaaggca atgctaaaga gctttctgaa attttaaaaa
     1561 agtctaattt aaacggtgaa tgggttgtag tactgcaatc aaaagagcaa aattttttgc
     1621 aaaatactct ttgtgaaaaa gatattatgg atttagagct gtctttaaaa gcaaaagcaa
     1681 aattattatc aaagatcaat ggaaaaaatg caaaagaaat ttatcaaaaa ctgcttttaa
     1741 gtcaagattg ggtaaaattt taatatgata gtttatggga agcaaatatt tttttatatt
     1801 ttagaatatc ataaagactg tatcaatgag ctttatttag caaaagaatg tgataaaatt
     1861 actttttcca aaatcgcaaa atcaggtttt aaaatcaaaa aacttgattt taaaactgct
     1921 caagcttatg cgaaaggtgg aaatcatcaa ggttttttgc tagatattaa agaaagttct
     1981 tttgcgaatt taaatgagat caaaaaaaat gattttattg ttatgcttta tggaattagc
     2041 gatgtaggaa atataggggc tatcacgcgt acagcttatg ctttaggggt tggggcttta
     2101 atttttattg gtgaaaaatt agccatggaa ggagtaattc gcacaagcag cggagcggct
     2161 cttgatttac ctattgcaat aagcaacgat gctttaagtg taataaacga actaaaacaa
     2221 gtaggttttt atttttatgc gagcgatggc tcgggaaaag aaattcacag tgtaaaaata
     2281 agcaatggta aaaaagtttt agttttgggt agtgagggtt ttggtttaag ctctaaaatt
     2341 ataaaaaagt gcgatgaatg tgtgggcatt gcgatgaaaa ataattttga tagtcttaat
     2401 gtcagcgctg cttttgcaat actttgtgat aggatgttaa atgcttaatt ggaaaaaaat
     2461 acaagaatta aatttaaaag aagttgcagc aaaaacgcaa attgaacttg attttcttga
     2521 agctttagta gaaaagaatt ttgctgtttt aagtcgtttt aatgttaaag gttttgttaa
     2581 aattttaagc agagaatacg aactcgactt tagtgatttt aacgaagagt atgaagctta
     2641 tcttaacgaa aacaatccta ctccacaaac aaaatcaaaa atgataaccc caaaactaga
     2701 tgcttatagt caaaaatcct ctaacgcttg gccttttttg attgttctta ttgttttagt
     2761 gattatagga agtggaattt attattttga tacacttaaa acttttttca aagatgaaca
     2821 aaataatact agtgcaacag ttatagacat aataggacaa gcacaagaaa atttaaaatc
     2881 tttaagtgga aacaatgttg ttgttataga caacaataaa gcacaagaaa caaatcaaac
     2941 agagagcgtt ttaccaagcc aaaacacctc attacaagaa aatgataaaa acataagcat
     3001 agaaaataat atcagtgaaa ataacacaac tctactcgat gaagaaaaaa atacccaaat
     3061 ccaagaagac acaaatacac taaaaactga ttctttaaaa gaagcacatt ttaaaacctc
     3121 taccaagatt tggataggtt tgatagattt aaaaagcctt aaaaaaacaa gctttgttaa
     3181 agaaaaagat tttaatattt ctttagataa agatcagtta attttaacag gggctgcagc
     3241 tttaacaatg tttgatcaag aaaataaaga acaaaaattt cctgtaggaa tttcaaaacg
     3301 tttcttgatt aaagatggaa aaattaccag tatttcagct gctgaatttg taaaattaaa
     3361 taaaggtaaa gaatggtaaa aaaaattatt attcttactt tttgggttaa tatatctttt
     3421 gcaatctcaa gtcttgaatt agcaaaaaat ttagtaaaca atcctagtaa aaattctcaa
     3481 ctagaattat tattctcaaa taattcttac atagataata atggaaattg tgatattgca
     3541 aaaatatctc aaatattaaa aaccaattct ttaattgcct taacactatc aaatcctcaa
     3601 agtctaaaac taaattttaa agcaaaagct gatgaagtta tgttttttaa aattttatcc
     3661 gatgttttaa cagatgccgg atatatatat tttatcccta cagatttgat tttaagagaa
     3721 ggaaatattg actataccat acaagtagaa tctcaatatg ttttagatcc tggaacgctt
     3781 tacaatctct taaaagaaaa ttctgtctat atagataata ttaagcgcat tggagcatat
     3841 gactatgaat atgatttaaa tttttccaat gctgtattaa aaaccaatac aaatgttaat
     3901 ttaaatactc caaaatcatt agaaaaaccc cttaaagact atgtgtttga tttaaaaaat
     3961 gctacaaatt tgattattga tgcaaatgat ttagacaatt ggtttcctaa aatcttcttt
     4021 ttagataaaa atctgaatct aattaaagca gtaaaaagcg aaaataaaaa taatcatttt
     4081 tcagaactta ttccaaatgg tgctatatat gctattgtaa gcgatatgta tagtttagat
     4141 aatatacgca ggggtttaaa aatcacactt aaaaaataaa ggattaagaa atgtttgatg
     4201 aaatccgttt taataccata gaaagacttc caaattatgt tttcgcagaa gtaaatgcga
     4261 taaaaatggc agcaagacgt gctggagagg atatcatcga cttttcaatg ggaaatcccg
     4321 atggtaaaac tccacaacac attatagata aactttgtga aagtgctaac aaagataaaa
     4381 cctcgggata ttctacatcc atggggattt ataaacttcg cttagcaatt tgtaattggt
     4441 ataaaagaaa atataatgtc aacctagatc ctgaaaatga agttgtagct actatgggtt
     4501 caaaagaggg ttttgtaaat cttgcaagag cgattataaa tcctggagat gttgctattg
     4561 tgccaactcc tgcttatcct atacatactc aagcttttat tatagcagga ggtaatgtag
     4621 caaaaatgcc tttagcttat aatgaaaaat ttgagcttga tgaaaatcaa ttttttgaaa
     4681 atttacataa aactttaaat gaaagcatcc cgcgtccaaa atatgtcgtt gttaatttcc
     4741 cgcataatcc aacaacagta acttgtgaga aaagttttta tgaaagattg atagcaacgg
     4801 caaaaaaaga aagattttat attatttcag atattgctta tgcagattta acttatgata
     4861 actataaaac tccttctatt ttggaaattg aaggtgcaaa agatgtagcg gtagaaactt
     4921 acactctttc aaaatcttac aatatggcag gctggcgcgt gggttttgta gtaggaaata
     4981 aacgcttagt cagtgcgctt aaaaaaataa aatcttggtt tgattatggt atgtacacac
     5041 ctattcaagt agcagctacc atagctttag atggagatca aacttgtgta gatgaaatcc
     5101 gtgcaactta tgataaaaga atgcacattt tacttgaagc ttttgaaaat gcaggctgga
     5161 aacttcaaaa accaagagca agtatgtttg tttgggcaaa actccctgaa agcaaaagac
     5221 atttaaaaag tttagaattt tcaaagcaac ttttacagcg tgctagtgtt gcagtaagtc
     5281 ctggggtagg ttttggcgaa gcaggtgatg agtatgtaag aattgcttta attgaaaatg
     5341 aaaatcgcat acgccaagct gcacgtaata tcaaaaaata tttaaaagag taagttatga
     5401 aagtagcgat tcttggttat ggcactgttg gaagtgcggt ggttaaattt cttttagaaa
     5461 atgataaact tattcgtgca agatgtgggc aaagcataac tcctgtgatc gctcttgcta
     5521 gaagtcctaa aaaaaatgct ttaattccaa ttactcatag cgttgcagaa attttaaatg
     5581 ctgatgtaga tgtttttgta gaattaatgg gtggggtgga tgaagctttt aaaatagtga
     5641 gtgaaatttt aaaaaagaaa aaagctgttg ttactgcaaa taaagctatg cttgcttatc
     5701 atcgttatga acttgaaaat ttggctaaaa atttagcttt tggttatgaa gcaagtgtgg
     5761 ctggaggaat tcctattatc aaggttttaa aagaaggttt aagtgcaaat aatattttgg
     5821 ctataaaagg gattttaaat ggtacgagta attatatttt aagttctatg agtcaaaaaa
     5881 atatgagttt taaacaagct ttgcaaatag ctcaaaattt aggttatgca gaggctgatc
     5941 caacttttga catagaaggg caagatgcag cacataaact gcttgtttta tcaagtatcg
     6001 cttataatct taaagctaaa cctgaagata ttttgatcga gggtattagt gaaattgcac
     6061 ctgaagatat gtattttgct aatgagtttg aatttaccat aaaactttta ggtatagcta
     6121 aggtgcgtga aaataaagta gaattaaggg tgcatcctac tatgatagat aaagaaaaaa
     6181 tgcttgcaaa agttgatgga gtgatgaatg ctataagcat taatggagat ttgttgggtg
     6241 aaagtttgta ttatggagca ggagcaggag gagaggccac tgcaagtgct gtgatttcag
     6301 atcttatgga tatagcaaga gatcaggtaa aagcaccaat gcttggtttt gtgaatactt
     6361 tagaatacaa gcttttaagc aaagatgaaa tttatacaaa atattattta agggtgaaag
     6421 ttgaagataa aatagggatt ttatctaaaa tcacacaatt gatgagtgaa aataatattt
     6481 ctatcgatag ttttttacaa aaacctaaaa aaaatgatga aaattacagc actttgtttt
     6541 ttactacaca tttaacttat gaaaaaagca tacaaaattt gcttgaaatt ttacgcaaac
     6601 aagattttat aaaaaccaag ccttttatga tgcgtataga ataatgggtg taaaagctta
     6661 tttagatgga attttagggg aagataaggc ttgtaaattt ttaaaaaaac aaggctttga
     6721 aattttaaaa agaaatttcc attctaaatt tggagaaatc gatataatag ccaaaaaaga
     6781 tgaaatttta cattttatag aggttaaatt tactcaaaat gattatgaag tttccgagcg
     6841 tttggataga aaaaaacttg aaaaaatttt aaaaactata gaattttatc atcttaaaaa
     6901 tggaatttca tcggattttc agattgatct gatttgcatt aaaaatgatg tgatacaatt
     6961 ttgcgaaaat ataagttttt aagctgatat ttaaaaaaat aaaatacaat tagacaaaaa
     7021 ttaaagaaag gaaaaattat gggaaaatat attgaattaa caagtgataa ttttgctcaa
     7081 gcaaaagaag gtgtagcttt agttgatttt tgggctccat ggtgcggacc ttgtagaatg
     7141 cttgctccag ttattgatga acttgcaaat gacttcgatg gtaaagctaa aatttgcaaa
     7201 gtaaatacag atgaacaagg tgatttagca gctgaatttg gtgttcgctc tattcctacg
     7261 cttattttct ttaaaaatgg tgaagttgta gatcaactcg ttggtgcaca atctaaacaa
     7321 gcaattagtg ataaactaaa ctctttacta taaactaaag gctagtataa ctagccttct
     7381 tcttaaaaat ttcaaattta tactaaataa taatttttat taactactat taagaataat
     7441 ttttatatca ttattaataa taaaattcaa tataaaggaa atataaatgt tagatgtagc
     7501 aatcataggt ggaggtcctg ctggacttag tgctggactt tatgcaacta gaggtggtct
     7561 taagaatgta gtaatgtttg aaaaaggtat gcctggtgga caaattacct caagttctga
     7621 aatagaaaat tatccaggtg tagcccaagt tatggatgga atttctttta tgactccttg
     7681 gaatgaacaa tgtatgcgtt ttggtttaaa acatgaaatg gttggagtag aacaaatttt
     7741 aaaaaatagt gatggaagtt ttaccatcaa attagaaggt ggtaaaacag aacttgctaa
     7801 agctgtgata gtttgtacag gctcagctcc aaaaaaagca ggttttaagg gcgaagatga
     7861 attttttgga aaaggtgtaa gcacttgtgc aacttgtgat ggattttttt ataaaaataa
     7921 agaagttgca gttttaggtg gtggagatac ggctttagaa gaagctttat atctagcaaa
     7981 tatttgttct aaggtttatc ttatccaccg cagagatgag tttagagcag ctccatctac
     8041 agtagaaaaa gttaagaaaa acgaaaaaat agaactcatt actagcgcaa gtgtagatga
     8101 agtatatggt gataaaatgg gtgttactgg ggtaaaagta aaattaaaag atggtagtat
     8161 tagagattta aatgttccag gaatttttac ttttgttggt cttaatgtaa gaaatgaaat
     8221 tttaaaacaa gacgatggta agtttttatg caatatggaa gaaggtgggc aagtaagtgt
     8281 tgatcttaaa atgcaaacta gcgttgctgg actttttgcc gcaggggacc ttagaaaaga
     8341 tgcgcctaag caagttattt gtgctgcagg tgatggagct gtagctgcat taagtgctat
     8401 ggcttatata gaaagcttgc attaagattt tataaagttg ctaaaagcaa ctttattttt
     8461 atttagcttc ctatcactcc accatcaagt tttcttatca tcattacact tgatcttggc
     8521 gtttttccat aaggaaaagt actacctttc aaaccttctc ctggatgttg tatgcctaca
     8581 aacattgtag tataatcctc actaaaagca atccctgtta attcacaagc aataggtcct
     8641 gttaaaaagc gtctgatttc ccctgttttt ggatttgctg ctagcatgca gttatttccc
     8701 atgccttcgt attcatcttt attagaataa gatccatctg tttgtatcca aagtcttcca
     8761 tctctatcaa atttaagtcc atcaggagaa ttgaatttat tttcacttgt aatattattt
     8821 gagcctttat ataagccttg ttggttatca ggatttccag caagagcaaa aatttcccaa
     8881 gtaaaatcat cgtctttatg agaatttttt ggcatccatt ttaaaatttg tccataaaca
     8941 tttttagttc ttagatttgc tgcattaggt tcttggcgat ttttgttgtt cgttagtgtt
     9001 gcaaatactt ctttagaacc actttgttta tggcttgcta tccattcaca tctatccata
     9061 ggagttgcac ctacaatgct tgcagcaaga cgcgtattga tgagtacttg agcttgagac
     9121 ttaaaaccat ttttttcatc taggccgttt ttgccatatt ctaaggctat ccattttccc
     9181 tgtcctttaa aatctcccac attgccgtta aactgtccta catacaaagt gccttcatct
     9241 aaaattttac ttgtatcaac accttttttg tatttgtgtt tgctaataaa tttataaata
     9301 aattcattca tctcatcatc acccatataa actataacag aaccatcttt ttctacgata
     9361 atttctgcat tttcatgttt aaaacgccct aaagaagttc ttttaacagg tgtgcttttt
     9421 gcatcaaaag gattgatttc cactatccaa ccaaaacgat tggcttcatt gatattttta
     9481 gctaaatcaa atctttcatc aaatttttcc catccataaa gactagtttt gttaaatcca
     9541 tagcgtttaa gagagtcatt aaattctaga ttttcgtctg aacttccaaa aaaatcgtca
     9601 aaattttctt cacaggtgat ataagttccc caaggtgttt gtccatttgc acaatttgca
     9661 aaagttccat gaacaaattt ttcatttttt aaaacttctt ttttagctgc tccacttact
     9721 tgcattttag tgtttgcatc gattctgcgg ttatacttag agtctaaaac cacagtccaa
     9781 tcatcaccct ttttttcgat ttctaagata ctcacaccca cactggcttg ctcatataaa
     9841 atatcttctt tgcttaaatt tttaccatga tgattaaaca tgatttcagg atttatatat
     9901 tcattattaa cggctaaaat tcctctgttt tttgaaagtg gaaaaaaact cataccatca
     9961 tcgttatctc caaaaaccaa atgagcattt ttaactgcat tcatatcgat gattttattt
    10021 tcatcataag gttttgcttt actaaaaagt ggatcacccc aagaaattaa aacctttgct
    10081 tcataacctt gcggtactat aactttatct tgtgtgcttg cactaacagc tttaaaacct
    10141 aacaaatcct tatccttaag cacaacagca cttaaatttg aacttgcaaa aaaagccacc
    10201 atagaaccta aagctgaacc ttttaaaaac aatcttcttt ccatttgttt ttaccccata
    10261 ttaaaattta aaacaatgga agtataaaaa tatttggaaa ctttttagaa actttgatga
    10321 aaaatttaaa ttgaagaaaa aatttatacc tagtttttca ctaggtat
//
LOCUS       DARGBD010000057        10311 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.057, whole genome shotgun sequence.
ACCESSION   DARGBD010000057 DARGBD010000000
VERSION     DARGBD010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10311
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.057"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(49..378)
                     /locus_tag="SFZ04_001194"
     CDS             complement(49..378)
                     /locus_tag="SFZ04_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEG8065467.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(375..1649)
                     /gene="hemL"
                     /locus_tag="SFZ04_001195"
     CDS             complement(375..1649)
                     /gene="hemL"
                     /locus_tag="SFZ04_001195"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEG8065468.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQVCHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1646..1993)
                     /locus_tag="SFZ04_001196"
     CDS             complement(1646..1993)
                     /locus_tag="SFZ04_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065469.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGT
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2073..2921
                     /gene="folD"
                     /locus_tag="SFZ04_001197"
     CDS             2073..2921
                     /gene="folD"
                     /locus_tag="SFZ04_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEG8065470.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVIDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            2931..3779
                     /gene="lepB"
                     /locus_tag="SFZ04_001198"
     CDS             2931..3779
                     /gene="lepB"
                     /locus_tag="SFZ04_001198"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEG8065471.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGSQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPTYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3801..4961)
                     /locus_tag="SFZ04_001199"
     CDS             complement(3801..4961)
                     /locus_tag="SFZ04_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG8065472.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNTALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKTPKQYNAYRYKGEELKKGELLLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMFQNASYLGIIKDNF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKDIFTPFNENKFGSGMILPLIKSEFLLISEENISELKKGDEITLLKI"
     gene            complement(4958..6214)
                     /gene="murA"
                     /locus_tag="SFZ04_001200"
     CDS             complement(4958..6214)
                     /gene="murA"
                     /locus_tag="SFZ04_001200"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEG8065473.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     AEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGVKITRLEE"
     gene            complement(6280..6709)
                     /locus_tag="SFZ04_001201"
                     /pseudo
     CDS             complement(6280..6709)
                     /locus_tag="SFZ04_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903009.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(6834..7400)
                     /locus_tag="SFZ04_001202"
     CDS             complement(6834..7400)
                     /locus_tag="SFZ04_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEG8065474.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDTFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEVFGGRVSKMQNP
                     MHGKISKLYFKKDPIFKGIKKEIEICLYHSLHISFMPKKCKILAHNSENIIMAIKHKK
                     YPIYGLQFHPEAVLTQKGKKILKNFMKL"
     gene            complement(7397..9181)
                     /locus_tag="SFZ04_001203"
     CDS             complement(7397..9181)
                     /locus_tag="SFZ04_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HEG8065475.1"
                     /translation="MTLENYAVFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLADYELYRYFQDKNFTSKKAYLSIFAFKKRKKFQKEDIDEEKFIPEFINFLDQDN
                     YKENFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDETR
                     EILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSENVMICD
                     LLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIFKALFPCGSI
                     TGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQDEIYTYSTGSG
                     LVWDSKFKDEFEELKLKSAILNPCDFYLFETMYFKNSQILFLKEHLLRLINSALKFNF
                     NTHKLFKDFYNVLNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNFPLPFKNPHKEGIL
                     KLILYRDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRSFYNQHSYKWQQ
                     NLCYDIAFFNEKDELCEGSRTNLILEKNAQFYTPQIQSGMLNGVYRNFLVNLGLIKEK
                     ALFKQDLFEAENIYCINSVRGLKKVKLQ"
     gene            complement(9171..10235)
                     /locus_tag="SFZ04_001204"
     CDS             complement(9171..10235)
                     /locus_tag="SFZ04_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG8065476.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
BASE COUNT         3310 a         1542 c         1539 g         3920 t
ORIGIN      
        1 ataaatgaat aatggcaaaa atacaaaata gagctttttt atgttccatt atttgttctt
       61 ttctttttga attttttctt tgatcaactc atctctttct ttaaattctt catagctttt
      121 tacttgaact ttataagctt tgtaaacatt aagtatagca gcactgatcc cccaaaaaac
      181 tccaagccaa aaaagccaag gataaggagt aaatttttta agtaaatatc ctattcccac
      241 acctataaat acagcaacaa ccatagagat accaagactt aaaccatccg cagcttcaag
      301 agttttgcga atgatttttt gtcttttgct gttggaattt tctaagtgat ttttttcttc
      361 ttttaaaata ttgctcatat tcttttaaag ctttccctaa cagcctctag tgttgtatct
      421 ataattttat catccatttt tgaacatata aagcctgttt caaattgaga aggtgctaaa
      481 taaattccat tttcaagcat atttttgtga aattttgaaa ataatgctag atcggatttt
      541 aatgcatctt ggtagtttga tacaggatct ttggtgaaaa agtatccaaa catagaacct
      601 acatgacaaa cttgcagtgg aagtcctttt tcatctgcta attttttcat tccttgggta
      661 agtttttttg ctaattttcc aagtttgtca taaagcttgg ttttcttttt ggcttttgta
      721 agacttgcta tacctgcagc cattgctaaa ggatttccac ttaaagttcc tgcttgataa
      781 actccaccca aaggacttaa aatatccata atttcagctc tagaagcaaa tgctgctgca
      841 ggtagaccgc ctcctattac cttaccaaaa gtaattatat ctgcttggat atgattgatt
      901 ccataggaac caaggtaaga tgctctatat ccactcatta cttcatcaaa aatcagcaga
      961 gtttgattgt ttttacagat cttagcaagt tcttctaaaa aatcttgttt agctggaact
     1021 aaccccatat ttccagcaat aggctcaatg ataacacatg caatatcttt atttttttca
     1081 aaaagctctt taacgctatt tatatcatta tatttagcta ctaaagtgtg tttagctaca
     1141 tcttctaaaa cacccaaaga actaggagag ttaaaagtag cagcaccact tcctgcactc
     1201 actaataatg aatcagaatg cccgtgataa catccttcaa attttaaaat tttatctttt
     1261 ttagtaaaac cacgggcaag acgaatagca ctcatggttg cttctgttcc actgcttaca
     1321 aagcggatct tttctaaatg aggaaaatca gataaaacaa gcttggcaag ttcagtttct
     1381 aataaagttg gagctccaaa acttgaacct ttatgaagtg ctttttgaca agctttttgt
     1441 atatctttat cgcaatgtcc aaaaagtaaa ggcccccagc tttgaacata gtctatataa
     1501 gaatttccat ctatatcgaa aatataagca ccttttccat gagaaataaa ttttggctca
     1561 ctttgaacat ttgcaaaagc acgaactgga gaatttacac cacctgcgat gaatttacac
     1621 gcttctttaa aagctttttt gtttgtcatt tttcttcctt gctaaattgc ttgatgtaat
     1681 tatataaagt tacaatttca tcatttgtta aagagtaatt tggcatgatt gattttgcgt
     1741 ctttactctg attaagagaa tttttaaaat tctcaaaact aagattttgt atacttggaa
     1801 ctttataagc tgttttaata ccatttttca tataatatcc taaaatttgt tcgcttccat
     1861 ctgttccatg acattcttta caactaatgc cccttggatt ttcataaagc attttagagt
     1921 attctttaag agtgataaaa tcagcaccaa aaagactgat actaaataaa aaaaacatta
     1981 aaacaatttt caaagtttca ccttgttaat gaagttttaa tatgatacaa tttttacttt
     2041 aaaaaagtga ttaaatttat agaaggaaaa taatgacttt gcttgatggt aaagctttaa
     2101 gcgcaaaaat caaagaagaa ttaaaagaaa aaaatcaatt tttgaaaagc aaagggattg
     2161 aaagctgttt agctgttatc ttggttggag ataatcctgc aagtcaaact tatgtaaaat
     2221 ctaaggctaa agcctgtgaa gaatgtggaa ttaaatcttt agtttatcat cttaatgaaa
     2281 atactacaca aaatgaactt ttggcattga ttaatacctt aaatcacgat gatagtgttc
     2341 atggaatttt ggttcagctt cccttacctg atcatatttg taaagattta atacttgaaa
     2401 gtattataag tagtaaagat gttgatggct ttcatcctat taatgtagga tatttaaatt
     2461 taggcttaga aagtgggttt ttgccttgta ctccacttgg agttatgaag cttttgaagg
     2521 cttatgaaat tgatttagaa ggaaaagacg ctgttattat aggtgcttca aatatagtag
     2581 gtcgtcctat ggctactatg cttttaaacg ctggagctac agtaagcgtt tgtcatatta
     2641 aaaccaaaga tttgagcctt tatactaggc aagctgattt gattatagta gcagcaggtt
     2701 gtgtgaattt acttcgatcg gatatggtaa aagaaggagt gattgttatt gatgttggaa
     2761 tcaatcgtct tgaaagtgga aagatagttg gagacgtgga ttttgaagag gtatctaaaa
     2821 aatctagtta tataactcct gttccaggtg gagtaggtcc tatgactata gccatgcttt
     2881 tagaaaacac agttaaatct gctaaaaata gacttaatta gggaaaatct atggaaattt
     2941 taaagaaatt atataaattt tcacagtctt ggactggaac tgtagttatt gttcttttgg
     3001 tgattttttt ctttatacaa gcttttgtta ttccttctgg ttctatgaaa aacaccttat
     3061 tggtagggga ttttttattt gttaaaaaat ttagctatgg tatcccaact cctcatattc
     3121 cttggttgga aattcctgtt ttgccagatt tcaataaaga tgggcatttg ataaaagcac
     3181 aagggtcaca aagaggagat atagttgttt ttagaaatcc tagaaatgaa aaagaacact
     3241 ttgtaaagcg ttgtgtaggc acaggaggag ataggatagt ttatgcaaat aaaacacttt
     3301 atgtaagaat gcatgagggt gatgaattta tgaaagaaca ttatccgaat gatcttgtta
     3361 ctcttggagg gcaaatttat gtaaaagaac cttataaaca aaaaggtatt cattatgatc
     3421 caaaaaaaga tatagaaagc gatattttac gctttcttag cataggtgat tttgctatgt
     3481 ctccaactta tattaaagaa cttggaaatc atataggttt tagcggcgga aatgcttatg
     3541 tttttgatgt gcctgaaaat gagtatttca tgatgggtga taatcgcgat tattcttatg
     3601 atagtcgttt ttggggttct gttccttata ggttgatagt aggtaaacct tggtttgtat
     3661 atttctcttg ggataaagat aaaaatgttc gctgggaaag gatagggcgt tttgttgata
     3721 ccttggaaaa tgatgaacaa tatatccatg atcatgatga tgaggataaa ttaagctaat
     3781 gtttgtgaaa aacacaaaca ttatattttt aaaagcgtga tttcatcacc tttttttaat
     3841 tcgcttatat tttcttcact tataagcaaa aattcacttt taataagtgg aagtatcata
     3901 ccagatccaa atttattttc attaaatggt gtaaaaatat ctttttctaa atttcctaag
     3961 atgagattat ttcttccgct tttaagcttt aaatccatac ccattttgcc ataaaatgtt
     4021 aaaggattgt ctaggtttcc acttaataaa ttaatgattt ttttagcaaa aataaaacaa
     4081 gaaagataag ctgccatagg atttcctggt aaaatcaata cgaaattttc accttttcta
     4141 taaagcttag taggtcttgc agggcgtgct tttaaacctt taaaaagtgg agtaaagcct
     4201 aattcatcta aagctttttc cataaaatca gcctcgccaa cgcttgcacc tcctgaagtg
     4261 attaaaagat caaaatttgt attttctaaa gcctctttag tgcttttaaa attatctttg
     4321 ataataccta aataagaagc attttgaaac atggttagca aaggtaaagc attggcatta
     4381 taaatacttt cttcatcgca ttcttgccaa ggttctttaa gttcatttcc gcttgaaaaa
     4441 atgcctatgc gaatttttct tatgacttct attttataaa gcccttgaga agcaagtagg
     4501 gcgatatgtt tatcattaag tttagtgcct ttttgaagca aaagttcgcc tttttttaat
     4561 tcttcgcctt tgtagcgata ggcattgtat tgtttagggg tttttttaat gatgagttta
     4621 ttttcttcta tatactcatc ttctaacatt aagatagtat cagcattttt gggcatttta
     4681 gcccctgtca tgattttata gcattcattc ttagcaactg tataaaaatt tttatctcct
     4741 gcaaaaatag tccctttaat ctccaaagcc tcattgatat cagtataatt aaaagcatag
     4801 ccatcaagag cagtattgtc aaaactaggt agattttttc tagcgtataa atctttagct
     4861 aaaattctat cctttgcttt ttcaaggcta ataagctcac tttcatctaa acatgaaatt
     4921 tgattttcta agtcttttaa ggtttcaaag atatttttca ttcttcaagc cttgtgattt
     4981 tcacacccaa atctttaaat ttttcttcta aattttcata acccctatca agatggtaaa
     5041 ttctatggac tttgcttgta cctttagctg caagagctgc taagataagg gctgaagaag
     5101 cgcgcaaatc tgtagccatg acatcagcag cgttaagttc ttttccgcct actatggtag
     5161 caatatgacc attgagttta atatccgcac ccattcttaa aagttcactt acatgcatga
     5221 aacgattttc aaatagtctt tcatcaataa tactagttcc attagctttt aaagctagtg
     5281 ccataaactg cgcttgcata tcggttggaa agcctggata ttcacttgtc atgatttcta
     5341 caggtttaat ttctttagca ggaagtaggg tgatactatc ttctgcaatc aaagtttcaa
     5401 aacccatttg atgaagtttt gctaaaactg cactaagatg agtggcgtta actttatcta
     5461 aagtaatttt agaatttgta atagcccctg cacaaagata agttcctgcc tcaattctat
     5521 caggtataac gctaaattct ttaaattcta aaagttctcc atcactacca taaatttcaa
     5581 gttcatctgt acctatgcct ttgatttcaa gtcctgcgtc ttttaaaact tcgcaaagtt
     5641 gaactacttc gggttctttt gcaacattta agagcttggt tttacctttg gctaaagctg
     5701 ctgccatgat gatgttttca ctacctgtaa ccgtgatttt atcaaaaaga atttcattgc
     5761 cttttaaatt tccactagct acgacatagc cttgtttaat ttgtatattt gcccccattt
     5821 tttccaaggc taaaagatgt aaatcaatag gtctttgtcc tatggcacat ccaccaggca
     5881 aagatacttc acaatgccca aaacgagcaa gcaaaggccc tagagtaagt atagaagcac
     5941 gcattttacg cacaatgtca tatttagcta tggtttgatt aagagtgttt gtgtttaata
     6001 aagcactatt gttttgaaaa ttgaccttag ctcctaaatt ttctagcaaa gatataagag
     6061 tttttatatc agcaacatta ggaacattgt tgatttttac ttcattttta gcaagtatgc
     6121 ttgaaacgat caagggtagg gcagcatttt ttgctccgct tattgtaaca tttccgctta
     6181 gatgatttgt gccttcgatt tctagataag tcatattttt ccttgaaaaa gtttaaaaat
     6241 gcatcattat agcattctta aacttttgaa aaaatataat caagtttgtt ggctttggag
     6301 ttcttgaatt tgagcttgaa ttatatctgc ttgagatttt agcacatcaa tttgtttttg
     6361 aaatgtccgt tttcatttgt tcgttagcgt ttgtcatttt ttgagtaagt tctgcaattt
     6421 tagctaaaat tccagctaat tttgctatta aagcctctaa tgcgggattt acgccacctt
     6481 tgctattttg aatggaattt tggtctttgt ggttttctat tttttcttga cttactttga
     6541 tttcatattc tttttcattt tttgaatttg tttgacttaa acttcttgct tcatctgaaa
     6601 tttgaatttt aaccacattg tcgctatgaa cattacttac caaatcattg tctttgttta
     6661 tttgtgtttg ataattgcta aaattttttg tcaaagtatc tattttcatc ttaaatcttt
     6721 ttaaattaat ttatattgtt atcggttttt tatttataaa tttatattaa tgatagttat
     6781 tttaaggata ttttgcttta gatttttata tttatatttt aaacgcaaaa aaactaaagt
     6841 ttcataaagt ttttaagtat ttttttacct ttttgagtta aaaccgcttc agggtgaaat
     6901 tgtaatccat aaatgggata ttttttatgt ttaattgcca taatgatatt ttctgaatta
     6961 tgagctaaaa ttttgcattt tttaggcata aaactgatat gtaaagaatg atataaacaa
     7021 atttcaattt cttttttaat acccttaaaa ataggatctt ttttaaaata aagtttagaa
     7081 attttaccat gcataggatt ttgcatttta gaaaccctac cgccaaaaac ttcagctata
     7141 cactgatgcc ctaaacatat acctaaaatt tttttatttt ttttaaaata tttgattgct
     7201 tttaagctta atttagattc cttaggagaa tgaggcccag gagagatgat aagatgagta
     7261 aaatcaaatt tttctaattc tttggctttt ttaaaggtat cattttttat cactttacat
     7321 tcaaaaccaa gttctttaag ataatagatg atggtataac taaaagaatc ataattatct
     7381 ataaataaaa ttttcttcat tgtaatttta ccttttttaa accacgcacg gaattaatac
     7441 aataaatatt ttctgcttca aataaatctt gtttaaataa tgctttttct tttatcaaac
     7501 caagattgac taagaaattt ctatatacgc catttaacat accactttga atttgtggag
     7561 tataaaattg agcgtttttt tctaagatga gattggttct tgagccttcg caaagttcat
     7621 ctttttcgtt aaaaaaagct atgtcataac acaagttttg ctgccatttg tatgagtgtt
     7681 gattataaaa actacgtaaa gagcttttgt gatagagatt gtcacttttt gagttaattt
     7741 tatcatcact taaaagcaaa atatcgtttg aattttgttt taaggcactt tgttgaaatt
     7801 cgtatcttcc gtctctgtat aaaataagct ttaaaattcc ttctttatgt ggatttttaa
     7861 agggtagggg aaaattataa aataaagagt gttttttgtg gaaaattttt tcatcgagtt
     7921 taaaaagtgt aaaattttga tattctttat aagaactttt ttgatttaaa acattataaa
     7981 aatctttaaa gagcttgtga gtattaaaat taaatttaag agctgaattt ataagcctta
     8041 ataaatgttc ttttaaaaat aaaatttgag aatttttaaa atacatggtt tcaaaaagat
     8101 aaaaatcaca aggatttaag attgcacttt taagttttaa ttcttcaaat tcatctttga
     8161 attttgagtc ccaaactaag ccgctacccg tgctataagt ataaatttca tcttgttttt
     8221 ctaaggtgcg tatggctacg ctaaatttat ttttattttt gtgtattaaa cctatagttc
     8281 cgcagtaaat accacgatct ctttgttcta attcttcaat aaatttaatg ctttcaagct
     8341 ttggagcacc tgtaatagaa ccacaaggaa agagagcttt aaaaatttga tataaagaaa
     8401 tatttttttt aagttttcct tgtacgcttg aagtcatttg atgtaaagta gggtgacttt
     8461 gaatttcaaa aagtttggtt tttaagcttt tttttgtgat gatttttgaa agatcgttgc
     8521 gtaaaagatc acaaatcata acattttcac tcagattttt tgtatcattt tgcaagaaaa
     8581 ttttattttc ttcatctttt ataggatctt tatcacgctt aattgtgcct ttcataggtt
     8641 ttgtaaatat ttttcttttt ttggttttga agaaaagttc aggagaaaag gataaaattt
     8701 ctcttgtttc atcttttata aaagctttaa attcagtatc ttgtctagaa agcaaaagtt
     8761 taaaaagttc aaaagaatcc attttgctat gaaatttaaa attttgagta aggttgattt
     8821 gataaactct tcctttagag attgcctctt taaccttgat gaaattttct ttgtaattat
     8881 cttgatctaa aaaatttata aattcaggaa taaatttttc ttcatcgata tcttcttttt
     8941 gaaatttttt tcttttttta aaagcaaata tagacaaata agcttttttg cttgtgaaat
     9001 ttttatcttg aaaatatcta tatagctcat aatcagcaag cattaaaata taaaaatcat
     9061 ttttatattt ttctataaat ttaaagcact ttttactttc tttgtggtta aaggctttta
     9121 aagtgtgttt taaatcatgg taaaaatatt taccaaaaac agcatagttt tcaagagtca
     9181 cttaattcct ttgcaacctg tgcggcaagt tttaatttat cattatcaaa atgagtgtaa
     9241 attcttgagg tatttaaact tgcatgccct aaagcttctt gaactaaaac taaatctttt
     9301 tgctttttat aaagcagggt ggcaaaagta tgacgcaaca tatgagcacc atttttttgt
     9361 ttgcgaattc ctgcacgaaa taaaagctgt tctactatgc gactgacata agattgagtc
     9421 agtggagtgc cttttttatt gacaaaaagt agggcgtctt tactcatata attaatactt
     9481 acatttttaa gcaaatcgta aataagttct ttttttatca ttacaacacg atatttattg
     9541 cctttagctc ttattcttat gatataaaga tcgttttctt cgctaatatc acccattttg
     9601 atattgatag cttcacttac ccgtatgcct gtaaaaatga tgattttaat aataagttta
     9661 ttgcgtatgg tattgttttt aaaatctgca ttttcaatag catcaagaaa ttttttaagc
     9721 tcttcttcac tcataaattc aggtaatttt acccctttag aacctgctat acctgcccag
     9781 tttttaagat tgatatcgaa aatatgtgct ttttcatctt cttcattttg cttgtctaaa
     9841 aaatcaaaaa aattaatcac agcaatacgg taattttttt tgcttgcatc tgataaagca
     9901 cctgttatac ttgctaaaac ttctacaatg agttcttcat caatctgttt taaagagtaa
     9961 agcttataaa aatttaaata ttcaaatact ttttttaaag gattaaaata agtattaact
    10021 ccacttaaac cagcatttct tgcttttttt gctagagcgt caagttcatc aatatttttt
    10081 acaccttttg taagagcaaa attaacttct gctaaagctt gtggattttt taactctttg
    10141 ttagatagtg agttgagttt aaattttaca tattttgcta accaaaataa gaatgatttt
    10201 tcaaaatttt cttcacaatc taaagggtat ttcataaaaa cttttcctaa atctaaaatt
    10261 ttagcttttt aattagaaaa ggtattttag tattaactta gtaaaaaaaa g
//
LOCUS       DARGBD010000058        10153 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.058, whole genome shotgun sequence.
ACCESSION   DARGBD010000058 DARGBD010000000
VERSION     DARGBD010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10153)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10153)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10153
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.058"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..576
                     /locus_tag="SFZ04_001205"
     CDS             <1..576
                     /locus_tag="SFZ04_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8065477.1"
                     /translation="SAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKN
                     YELANDGLKIQDFSELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTL
                     KINLYKFVFTPFFAPFLMLIMYYFFPVIARFFNLAIVAFVAFVATLMIWGVLFLLTRL
                     SENSVIASEIGIVVPIIILGCLSAYMYYKHR"
     gene            620..1828
                     /gene="lysA"
                     /locus_tag="SFZ04_001206"
     CDS             620..1828
                     /gene="lysA"
                     /locus_tag="SFZ04_001206"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEG8065478.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYKKDECESDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQGEESLCDVVGGICESGDFFA
                     KARSLPGTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            1830..2597
                     /locus_tag="SFZ04_001207"
     CDS             1830..2597
                     /locus_tag="SFZ04_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEG8065479.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLRPCKVAAFGADEFIKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            2585..3658
                     /gene="pheA"
                     /locus_tag="SFZ04_001208"
     CDS             2585..3658
                     /gene="pheA"
                     /locus_tag="SFZ04_001208"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEG8065480.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            3648..4742
                     /locus_tag="SFZ04_001209"
     CDS             3648..4742
                     /locus_tag="SFZ04_001209"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEG8065481.1"
                     /translation="MKFNEFLNNLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGAP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLKLCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            4794..6476
                     /gene="fliF"
                     /locus_tag="SFZ04_001210"
     CDS             4794..6476
                     /gene="fliF"
                     /locus_tag="SFZ04_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEG8065482.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            6476..7504
                     /gene="fliG"
                     /locus_tag="SFZ04_001211"
     CDS             6476..7504
                     /gene="fliG"
                     /locus_tag="SFZ04_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEG8065483.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            7512..8342
                     /gene="fliH"
                     /locus_tag="SFZ04_001212"
     CDS             7512..8342
                     /gene="fliH"
                     /locus_tag="SFZ04_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEG8065484.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFTKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            8335..>10153
                     /locus_tag="SFZ04_001213"
     CDS             8335..>10153
                     /locus_tag="SFZ04_001213"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEG8065485.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHTQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNPCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSL"
BASE COUNT         3608 a         1268 c         2006 g         3271 t
ORIGIN      
        1 agtgctcaaa atataaaaat ttttaatatt aatgatttaa atttaagctc ttttgtaagt
       61 gctaaaaatg cccattttga aggtgaaagc tggattttgc gagatggtaa tattacatta
      121 ttacctaaaa attatgaact tgctaatgat ggtttaaaga tacaagattt ctccgagctt
      181 aaatcacttg aaggttttaa accaaagatt atagaagggg ttgctagtaa tagtgattat
      241 tcaatatctg atgcacttga aagttttgag ctttttaagg cgcaaaatgt caatacagat
      301 actcttaaaa tcaatcttta taaatttgtt tttactcctt tttttgcacc atttttaatg
      361 cttattatgt attatttttt tcctgtaata gcaagatttt ttaatcttgc tattgtagct
      421 tttgtagctt ttgtagcgac tttgatgatt tggggagtct tgtttttgct tactagatta
      481 agcgaaaata gtgtgattgc aagtgaaatt ggcattgtag tgcctattat aattttgggt
      541 tgtttaagtg cttatatgta ttataagcat cgataaatta agctttgtgt agtaaaatta
      601 taaaaattaa aggttaaata tggattataa acaattaaaa caagaattta ataccccttt
      661 ttatatttac aattttgatt tcataaaaga gcgtttttta aatctcaaag aggcttttaa
      721 ggctagaaaa tctcaaattt tttacgctgt aaaagccaat tcaaatttaa gtttgttgca
      781 aatgcttgca aatttagata gtggatttga ttgtgtgagt ataggcgagg taaagcgtgc
      841 cttaaaagca ggagcaaaag cttataagat tatttttagt ggagtaggaa aaaccaaaga
      901 agagttaaga caagctttag aatatgatat tttatatatt aaccttgaaa gcgaagctga
      961 aatgatgctt ttagaaagtg tggctaaaga acttaatcta aaggcaagaa tcagtattcg
     1021 tgttaatcca aatgttgatg caaaaactca tccttatatt tctacaggat taaatgaaaa
     1081 taaatttggt gtcgaaattg atatagcaag aaaaatgtat ctttatgcaa aaaattcatc
     1141 ttttttagag cccgttggag tgcattttca tataggttcg caacttttag atatttctcc
     1201 cattcatgaa gcagcaggca tcgttgcaaa acttgtaaga gagttaaaag ccttgcaaat
     1261 cgatcttaaa ttttttgata taggcggtgg tttgggtgtg gcttataaaa aagatgagtg
     1321 tgaatctgat ctttatgatt atgcacaagg tatattagca caacttcatg ggcttgattt
     1381 aactatagga atggagcccg gaaggtatct agttgctaaa agtggagaat ttgtttgttc
     1441 agtgctttat gaaaaacaaa ataaaaccaa gcgttttgtt gtagtagatg gagcgatgaa
     1501 tgatcttata cgcccaagtt tatacgaggc ttatcatgaa ataatcttac cttataatca
     1561 aggcgaagag agtttatgtg atgttgtagg tggaatttgt gagagtgggg acttttttgc
     1621 taaagcaagg tctttgcctg gcactcaaag tggtgatata atggttatta aaaatactgg
     1681 agcttatggt tttagcatga gtagtaatta caatactcgt aataaagttt gcgaattagc
     1741 ccttgaagaa ggacaggtaa gattgatccg tcaaagagaa aattttgaag atcaaatcgc
     1801 tttagaagag aaatttttaa aggcttaaaa tgtttttttt agatgttcaa gggactttaa
     1861 tttctgatca tgataaatct ttaatccatg gtgctaaaga actgatcgat tttttaaatg
     1921 caaaaaatct tccttatctt atcatcacta acaatacaaa aaaacttgat tttttagaaa
     1981 aattacagca aaaaggattg gctataaaag aaaatgctta tattgatcct ttcagcgttt
     2041 taaaacacct tttaagacct tgtaaagttg cggcttttgg tgcagatgag tttataaaaa
     2101 gtcttgaaaa tcttggtttt gagctcgatt ttgtaaatcc tagtgctgtg cttgtggcta
     2161 gttatgatga ttttaaattt aaagattttg ccactatgat agaattggct agaagagaag
     2221 ttagatttat agctatgcac gaaactagta tttataaaaa agatggtagg ccttatcctg
     2281 gtgtaggtag cattatggct atgcttaaaa atgctattga ttttgaatac gaggttgtgg
     2341 gtaagcctag cattgctttt tataaagaag ctttaaattt aataagaaga caaaattcaa
     2401 aaatcgattt tgaagatatt aaaatcatta gtgatgattt taggggtgac ttgcttaagg
     2461 caaaagaact tggcatgaaa accttgctag ttttaagcgg caagataagc gacacaaaag
     2521 ggcttgatac ggatttgctt gatggagttt atcctagtgt ttttgagttt ttaaaggatc
     2581 taaaatgcca aatttagaag aatttagaaa taaaatcgat gcggttgatg ataaaatttt
     2641 agatctttta aatgaaagaa tgacttatgt taaaagtata ggtgagctta agcaaagtag
     2701 tgggggaagt atttatcgtc ctgagcgtga aagagccatt atcaatcgtt taaaaaatgc
     2761 aaatttagga cttttagatc aaaatgccat agaggcaatt tatcaagaaa tttttgcagt
     2821 ttcaagaaat ttagaaatgc ctcaaactat agcttattta gggcctgaag gaacttatac
     2881 acatcaagca gcaagaagtc gttttggtgc gatgagtcgt tatatagcct tggctaatat
     2941 cgaagatgtt tttaaagagt taagcaacaa agaagcaaaa tacggtgttg tacctataga
     3001 aaataatacc gaaggtgcag tgggcattac tttagattgt ctaggtaagt ataatgagct
     3061 taaaattttt ggcgaaattt atatggatat tcatcattct tttgtaggaa ttaatgaaaa
     3121 tttaaaagaa atcaaacgca tttattcgca tccgcaaggt tataatcaat gtcgtaaatt
     3181 tttagaaagt catgaactta gtgctataga atttgttcct tcaaaatcta cagctaatgc
     3241 agcttaccta gcttcgcaag ataaatatgc ggcagcaatt tgttctagaa tagcggctaa
     3301 gctttataat gtgcctgtac tttttgataa aatagaagat aatgcagcca ataaaacaag
     3361 atttttaatt ttaagcgata ttaaaaatcc taaaatgcca aattgtaaaa cttctatttt
     3421 agcacacaca gcacataaac ctgggggact tagcttttta ttagagcagt ttaaaaaaga
     3481 aaatatcaat cttactaagc ttgaatctcg ccctgtaaaa tcaaaagaat ttttacacag
     3541 tttttatata gattttgaag ggcatattga tgatgaaaat gtaaaaaaag ccttaaaaga
     3601 tatacaagag attgtttggc ttggatctta tttatcagga gaaaaagatg aaatttaatg
     3661 aatttttaaa taatttaagc aattatgaac ccggcaaaga tatagaagtt attgctaaag
     3721 aatatggcgt taaagaagtg ataaaattag caagcaatga aaatcctttt ggcgcgccac
     3781 caaaagctat agaatgttta agacaaaatg caaacaaagc ccatctttac cctgatgata
     3841 gtatgataga acttaaaagc acattggctc aaaaatacaa agttcaaaat gaaaatatta
     3901 tcatcggtgc aggcagtgat caagtgattg aatttgctat acatgctaag ttaaattcta
     3961 aaaatgcttt tttgcaagct ggagttacct ttgctatgta tgaaatttat gccaaacaat
     4021 gtggtgcaaa gtgttataaa actcaaagta ttactcataa tttagatgag tttaaaaaac
     4081 tttatgaaac gcacaaagat gaaattaaac ttattttttt atgcttacca aacaatcctt
     4141 taggcgagtg tttggatgca agtgaggcga ccgagtttat taaaggtgta aatgaggatt
     4201 gtttagttgt gattgatgca gcttataatg aatttgcaag ttttaaagat agcaaaaaac
     4261 atttaaaact ttgcgaattg attaaagaat ttgacaatgt actttattta ggaacttttt
     4321 ctaagcttta tggattagga ggtttacgca tcggttatgg tatagctaat gctaatatta
     4381 ttagtgcatt ttacaagctt cgtgcgcctt ttaatgtgag taatcttgct ttaaaagcag
     4441 cagttgcagc aataaatgat gatgaatttg ctaaaaaaac tttagagaat aatttttctc
     4501 aaatggagct ttataaagaa tttgctaaaa aacataatat caaaattatc gatagttata
     4561 caaatttcat cacttatttt tttgatgaaa aaaatagtac agatttgtct gaaaaattgc
     4621 ttaaaaaggg tataataata agaaatttaa aaagctatgg tttaaatgct atacgcatta
     4681 ctataggaac atcttatgaa aatgaaaaat tttttacaga atttgataag attttaagat
     4741 agataaatca aataaaaata tgtaaaattc gctaaactaa gggatgagaa ttaatggatt
     4801 ttaaaaatat gcttcatcaa attgggcaac tttatcaaaa tttaactcgc aagcagcgta
     4861 tagtgattgc tgcatctatt atagttgtgg ttgggttttt ggttttttta gctttatttc
     4921 gtggaagtgg tagtaatgca aataatggat atgcagtttt agttgaaaat gtaagcccaa
     4981 gttcttctgc tgcaattgta gctaaacttg aacaaaataa tattccctat aaattagaaa
     5041 gtgaaaataa aattttagtt ccacaagatc aggtttatcg tcaaagaatg tttattgcaa
     5101 gcgaaggtct tataaaagat agtcgcgtgg gttttgaagc ttttgatact caagcttttg
     5161 gagctacaaa tgaagagcaa aaggtaaaat accaaagagc catagaaggc gaacttgcaa
     5221 gaactattga gactttagaa cctattcgta gcgctgttgt acacatagca tttcctaaag
     5281 atagtgtttt taccgaaagg caaattccgc ctacagcttc agttgttgtt aatgttcgcg
     5341 aaggtttaaa gcttactaga aaacaaattg atggtataaa aaatattgtt tcagcggcag
     5401 ttccaaaact tactaaagaa aatgttaaga ttagtgatca aagtggtgtg cctttagatg
     5461 agcaagaagc atatgaagat gacttggttc gtgcgcaaat taaatttaaa agtgatcaag
     5521 aaaaagcttt agaagataag attatagaaa atttagctcc ttttgcaggt ggtatggata
     5581 aagtaaaagt gagtgtaaat atagattttg atttttccaa gcaagaatct caaagtgaaa
     5641 tttatgatcc aaatcctata gtgcgtagtg agcaaacttt aaacgaggaa agaacaggta
     5701 gaaaagatcc agaaattcag ggtgttccag gtgctgtttc taatataggt cctgttgaag
     5761 gacttgacaa taaaggtcaa attgacactt ataaaaaaaa tcaagttact acaaacaatg
     5821 aactttctaa aactatcaca aatacaaaaa aacaatttgc aacagtttta cgcacttcgg
     5881 cagctgtcac tatagatgga aaatatcaag atgtggttga tgaaaatggg gatgtgaaaa
     5941 gcgaatatgt tccattgact aaagaagagc ttgcaagtgt tgagagtata gttaaaaata
     6001 ctattaattt tagcgctact agaggtgata gcgttgtggt gcaaaattta ccatttcatc
     6061 gtgagtcgat tagagttgag agtaaagtta aaacttttta caatcgtttt gttgagccat
     6121 ttattccgcc ggttaaatac tttattgcag cgattttact ttttattttt tacaaaaaag
     6181 ttattgctcc atttactcaa aaaatgcttg aagatgtcgc agcacaagag gagatgcagc
     6241 aaggtccaaa tgctgtttta gatgatgctg aagatgcttt agagaaattt aatgcagcaa
     6301 ggaaaaaagt tgaagaacaa cttggttttg gggataattt taatgaagat tctatccagt
     6361 atgaggtttt gcttgaaaaa ttgcgtggtt tggtaagtga taaaggtgag gaaattgcag
     6421 cacttttgca aaacttaatt caaaatgata gcgaatttgg cgaaaaggat atgtgatgat
     6481 aaagctaagt gaagaacaaa aaatggtcta tgatgattta tcgatgcctg agaaggtagc
     6541 gatatttctt atacaacttg gcgaagatgc aacaacttct gtgttttcac atatggaaat
     6601 tgatgtaatt acagaaattt cacgttatat tgctatggct aaaaatgttg atagatctgt
     6661 agctactgcg gttttagaag aattttacac tctgcttcaa tcaaatcaat atattaaaag
     6721 tggtggtttg gaatatgcta aagaaatact ttttcgtact tttgggccag agattgcaaa
     6781 taaaattctt gaaaaactca ctaaaagtat ggagaataat caaaattttg cttatttggc
     6841 gcaaattaaa ccacagcaac ttgcagactt tattaccaaa gagcacccac aaaccatcgc
     6901 tcttattttg gcacacatgg attctattca tgcggcagaa actttagagt attttagtga
     6961 tgaattaagg gctgaggtgg ttataagaat ggcaaatctt ggcgatattt ctccaagtat
     7021 tattaaaaga gtttctgcag tgttagaaag caagcttgaa agtcttacct cttataaggt
     7081 tgaagtgggc ggcccaagag cggtagcaga agtgcttaat cgcttgggtc aaaaagcaag
     7141 caaatcaacc attacttata ttgaacaaag tgatgaacgc ttagcagaga ctattaaaga
     7201 gcttatgttt actttcgatg atatacaaaa acttagcact caggctataa gagaaatttt
     7261 aaaagtagcc gataagcgtg atttaatgat aggtttaaaa ggtgcaagtg aagagttaaa
     7321 gcaaaaattc ttagccaata tgtctacgcg tgcaagcgaa gcttttcttg aagaaatggg
     7381 ttttttgggt gctgtgcgtg ttaaagatgt tgaagatgca caaagaaagg ttgttgaagt
     7441 ggtgcaaaaa cttgcagaac aaggtcttgt tcaaacaggc gatgcggatg aaatgataga
     7501 gtaggtgaga gatggttaat cgtagcaatg taatttctgg tggggcttct gatcagcatg
     7561 ttgttgaagg atatcgtttt aaagttattt cagaatttga taatcataca ggtgaaaaaa
     7621 aacatactca aactccagat gaagaaaata ctaatatatc tttaaatgac gaaaaaccag
     7681 tcgaagaaaa tcaagtcatt gcctctacac aagctgttat ggaaactcaa attccaacat
     7741 ttcaaccaag ctttgttgaa gatttactta aaaaaacaga tgaaatgtca agcaatatta
     7801 ttaaacttca aatgcaaata gaaagccaag agaatgaatt taataaccgc ttaaattcag
     7861 aacttgaaaa tgctaaagaa aaatttacca aagagggtta tgagaaagca aaagaagaat
     7921 ttcaaaagga attgagtgat tttaaagata agtatttaaa aagtatagcc aaacttgata
     7981 atgcttgcga aaatcttgaa aatttcatag aaaaaaatga gaaagaatta gcagatactg
     8041 ctatagatat cgctaaagaa gtaatcttaa aagaacttga actaaattca agtaagatag
     8101 cttatgcttt ggctaaagat ttaatcggcg agcttaaggg tgctagtgca attgagctta
     8161 aggttaatgc agaggattat gagtatttaa aagagcaatt tgatcagaat gctcatatta
     8221 aaataagtct tgatgatgca attagcaaag gaagtgttgt tattataagt gacgcaggca
     8281 atatagaatc caatcttaac tctcgtctaa ctaaaattaa aaaaatggtg aataatgagt
     8341 aaaaaatttg cccatactca agaagagtta gaaaagctaa gtttaaaaga attagaaaat
     8401 ttagcagcat ctatgcgtga aaaaatcata caagttgtga gtaaaaatgg tgggcattta
     8461 agttcaaatt tgggtgctgt agaacttagt atagcaatgc atttggtttt tgatgcaaaa
     8521 aaagatcctt ttatttttga tgtgtcgcat cagtcttata cacacaagct tttaagcgga
     8581 aaagaagaaa tatttgatac tttaagacaa atcaatggtt taagtggtta tacaaaacct
     8641 agcgagggag attattttgt agcagggcat tctagcacct ctatttcttt ggcagtaggt
     8701 gcttgtaagg ccattgcttt aaaaggtgaa aagcgtattc ctgttgcttt gattggagat
     8761 ggtgctttaa gtgcgggtat ggcctatgag gctttaaatg aattgggtga ttctaaattt
     8821 ccttgcgtaa tacttttaaa tgataatgaa atgagtattt caaaaccaat tggagcaatt
     8881 tcaaagtatc tttctcaagc tatggcaacg cagttttatc aaagttttaa aaagcgtatt
     8941 gctaaaatgt tggatatatt gcctgatagt gctacttata tggccaagcg ttttgaagag
     9001 agttttaaac ttattactcc tgggcttttg tttgaagaat tagggcttga atatataggg
     9061 cctattgatg gacataattt aggtgaaatt atttctgcat taaaacaagc aaaagctatg
     9121 caaaagcctt gtgtgataca tactcaaacc ataaagggta aaggctatgc tttagccgaa
     9181 ggaaaacatg ctaaatggca cggggtggga gcttttgata tagatagtgg agagagtgtt
     9241 aaaaaaagtg atactaaaaa atctgctact gaaatttttt ctaagaattt gcttgattta
     9301 gcctcaaaat atgaaaatat tgttggggtt acggcggcta tgccaagtgg aacaggtctt
     9361 gataagctta tagaaaaata tccaaaccgt ttttgggatg tggctattgc agaacagcat
     9421 gcagtaactt ctatggccgc tatggcaaaa gaaggattta aaccttttat tgcaatatat
     9481 agcacttttt tgcagcgtgc ttatgatcaa gtgatccatg attgtgcgat tatgaattta
     9541 aatgtggttt ttgctatgga tagggcaggg atagtaggcg aagatgggga gacgcatcaa
     9601 ggtgtttttg atcttagttt tttagctcct ttgccaaatt tcactctttt agctccaaga
     9661 gatgaacaaa tgatgcaaaa tataatggag tatgcttatt tacatcaagg acctattgct
     9721 tttcgttatc ctagagggag ttttattttg gataaagaat ttaatccttg tgagataaaa
     9781 cttggtaagg cgcaatggct tgtaaaaaat agtagtgaaa ttgctttttt aggttatgga
     9841 caaggtgtgg caaaagcgtg gcaagtctta agagccttgc aagaaatgaa taataatgct
     9901 aatttgattg atttaatttt tgctaaacct ttagatgaag agcttttgtg tgagcttgct
     9961 aaaaaaagta aaatttggtt tatttttagt gaaaatgtta aaattggcgg tatagaaagt
    10021 ttaattaata attttttaca aaaatatgat ttgcatgtaa aagttgttag ctttgaatat
    10081 gaagacaaat ttattgaaca tggaaaaaca agtgaggtgg aaaaaaatct agaaaaagat
    10141 gtcaatagtt tgt
//
LOCUS       DARGBD010000059        10034 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.059, whole genome shotgun sequence.
ACCESSION   DARGBD010000059 DARGBD010000000
VERSION     DARGBD010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10034
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.059"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(14..100)
                     /locus_tag="SFZ04_001214"
     tRNA            complement(14..100)
                     /locus_tag="SFZ04_001214"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(64..66),aa:Leu,seq:caa)
     gene            281..2533
                     /gene="flgL"
                     /locus_tag="SFZ04_001215"
     CDS             281..2533
                     /gene="flgL"
                     /locus_tag="SFZ04_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HEG8065486.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTKPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADTKDE
                     LKNIIEAANQEGISMNEVTNRVMQAATAAPSNGDITKLNNPVTVTINNQQFTIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            2643..5483
                     /locus_tag="SFZ04_001216"
     CDS             2643..5483
                     /locus_tag="SFZ04_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEG8065487.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFGYYYPFSLLILNYLYYKKNYKIE
                     NFKRRELFGFSLAFFSTLLLFSVFYREFGYILEIVYGFFSIILGRTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKIEQAFKSLLMRVFGGENEKEDVGKSEPIAPKLN
                     ILQDSIYGNLQINKKRETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESDKINENKNL
                     DKADNIFGFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQ
                     EVKLQKAVLAKEIAINQALLREIEQGEVEKPKDFTLPPLDFLANPKEHKQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGGEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSVGVTTNESFDGEVDELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(5569..5841)
                     /gene="rpsO"
                     /locus_tag="SFZ04_001217"
     CDS             complement(5569..5841)
                     /gene="rpsO"
                     /locus_tag="SFZ04_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEG8065488.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            6016..6426
                     /locus_tag="SFZ04_001218"
     CDS             6016..6426
                     /locus_tag="SFZ04_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HEG8065489.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIIKNNGKK"
     gene            6413..8587
                     /gene="flhA"
                     /locus_tag="SFZ04_001219"
     CDS             6413..8587
                     /gene="flhA"
                     /locus_tag="SFZ04_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEG8065490.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVASVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            8596..9642
                     /locus_tag="SFZ04_001220"
     CDS             8596..9642
                     /locus_tag="SFZ04_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEG8065491.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNVKFYNSNYGKEINENFNS
                     IIGDIEKDENFGKAIILITDLNLNLNQCEEFEKICKEKNTKIFLLDHHQSGEECAQKY
                     SWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGL
                     IANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDD
                     TLSNLISYFVVEKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFID
                     VSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLI
                     KSKELKKENNESKQ"
     gene            9626..9868
                     /locus_tag="SFZ04_001221"
     CDS             9626..9868
                     /locus_tag="SFZ04_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065492.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLEISNKEGVDEILEVVEFLKNKYKDFFQ"
BASE COUNT         3733 a         1343 c         1717 g         3241 t
ORIGIN      
        1 cgcaaaaaat aagtggtgcc cgaggtcgga ctcgaaccga cacaaggttg cccttaccag
       61 attttgagtc tggcgcgtct accagtttca ccactcgggc tcatttttaa gatttaaagc
      121 taaaattata cttttttagg ctaaaaaata ctttaaaaat aaaaagtatt ttcaaaaaga
      181 caatataaaa ttatataatt taattttttg gaacagttat tgcttttgtt tattagcaat
      241 gtttgaaaag attttaactt taatacttta gaggaaaaaa atgagaatta caaataaact
      301 taacttcaca aatagtgtga ataattctat gggcggtcaa agtgctttat atcagatatc
      361 tcaacaactt gcttcaggtt tgaaaataca aaattcatat gaagatgcaa gcacttatat
      421 agataatacg cgtcttgaat atgaaattaa aacattagaa caagtaaaag aatcaacaag
      481 tagagctcaa gaaatgactc aaaatagtat gaaagcttta caagatatgg ttaaacttct
      541 tgaagatttt aaagttaaag taacccaagc tgcaagcgat agcaattctc aaacctcaag
      601 agaagctata gcaaaagaac tagaacgtat aaaagaaagc atagttcagc ttgcaaatac
      661 cagtgttaat ggtcagtatc tttttgcagg ttctcaagtt gcaaacaaac cttttgattc
      721 taatggaaat tattatggag ataaaaataa tattaatgta gtaactggag ctggaactga
      781 aagcccatac aatataccag gttgggattt attttttaaa gcagatggag actataaaaa
      841 acaaataagc actaatgtta gttttacaga taatcgttgg gatttaaata aagaccctga
      901 taaaactaaa tatctcacag gagattctaa atggcaacaa cttatcggac aaggttatgt
      961 aaaagataat agcttagatg ctgacaaaga ctttgagtat gatgatagca aactagattt
     1021 tcctccaaca actctttatg ttcaaggaac caagcctgat ggaacaagtt ttaaaagtgc
     1081 tgtactcgtc aaacctgaag atactttaga agatgtaatg gaaaatattg gagctcttta
     1141 tggtaatact ccaaataata aagtagtaga agtaagtatg aatgatagtg gtcaaattca
     1201 aattacagat ctaaagcaag gtaataataa actcgatttt catgctgtag ctttcacacc
     1261 acaagctgat accaaagatg aacttaaaaa tattattgaa gctgctaatc aagagggtat
     1321 ttcaatgaat gaagttacaa atagggttat gcaagctgct acggctgctc ctagtaatgg
     1381 agatataaca aaattaaaca accctgtaac tgtaacaatc aacaatcaac aattcacaat
     1441 cgatttaaaa caaactgatt ttatcaaaag taaaatgaca gatacagatg gaaatgctgc
     1501 taatggagct gattacgata atgtgtattt tgaaaaaaat ggcaatactg tttatggtaa
     1561 tgtttctcaa gttatcaaag gaagcaatgc ttatgccact gattcaacca aacttagcga
     1621 ggtaatggca ggagatagcc taaatggtac tactttaaat ttaaaagtca attccaaagg
     1681 tggaaattct tacgatgtta ctataaattt acaaacttca actgtaagct atcctgatcc
     1741 taataatcca ggtcaaacca taagctttcc tattatgcat actaatcctg caactggaaa
     1801 tagtggggtt gttacaggat caaatgatat tacttatggt caaattaatg atattatagg
     1861 tatgtttgct gcagataaaa ttcctacaac aaccatacaa gccaataatg gtcaaattaa
     1921 taatgcagat tatacccaaa tacaacaact catgaaagat tcacaagcta ctgttgatgt
     1981 aagtatggat tataaaggtc gtattagtgt tactgataaa ctttcttcag gcactaatat
     2041 agaaatttct cttagtgatt ctcaaagtgg ccaatttcca gcacctcctt ttaccacaac
     2101 ttctactgta caaaatggtc caaattttag ttttagcgcg aataattctt taactataga
     2161 tgagccaaat gtggatatta ttaaagattt agattcaatg attgatgctg ttttaaaagg
     2221 caatatgaga gcagactccg aaagtgaaaa ccctagaaat acaggtatgc aaggagcttt
     2281 agaaagactt gatcatttag cagatcatgt tagcaagctt aatacaacta tgggagcata
     2341 tcataatact atcgaaggtg ttaatacacg cacatccttt ttaagcgtta atgtccaaag
     2401 tataaaatca aatgtgattg atgtagatta tggtgaggca atgatgaatt taatgcaagt
     2461 tcaacttgca tatcaagctt ctcttaaagc tagtacaaca atttctcaac ttagcttatt
     2521 aaattatatg taaaattttt tatggtataa tttggctttg attttatttt caaggaaaga
     2581 atattaaaaa agaagccatt tttaccagct ccacgcttgt tattttttat ctttgtcttt
     2641 gtatgctagc acctggcatg ggagaatggg tttacaaggc taatttattt ttatttggag
     2701 aatttgggta ttattatcca ttttctttgc ttatattaaa ttatctctat tataaaaaaa
     2761 attataaaat agaaaatttt aagcgtaggg agctttttgg tttttctttg gccttttttt
     2821 ctaccttgct tttattttct gtcttttata gagagtttgg gtatatttta gaaattgtat
     2881 atggattttt ttctataatc ttagggcgta cagggagtgg aatttttgct cttttacttc
     2941 tactattttc tttggtttta ttgtttccaa aatttgcaaa agaaatttta aaaatagaat
     3001 tagattttac ttatttatta aaaatagagc aagcttttaa atctttactt atgcgtgtat
     3061 ttggtggaga aaacgagaaa gaagatgtag gtaaatcaga acctatagct ccaaaattaa
     3121 atattttgca agatagtatt tatggaaatt tacaaataaa caaaaaaagg gaaaccaata
     3181 acttagaaca gataattaaa gatagcaata tcaatgcaag taaaaattca attaccacgg
     3241 ccaaggaaaa ttttgaaaaa ctaaaaaatc aaattttaga tgaaaccata gagattgata
     3301 aacaaagttt aaaagaatca agaagttttg ttcatgagca ttctcaacaa gtgcgaaatt
     3361 tcgcacaaaa ggctagtaaa atgagcatta gtcttgatga agattttaat tttatttcag
     3421 aagaagaggt agatatgatt cctgaacgtt ttttaaaacc taaaaaactt gaagatataa
     3481 agcaaataga tacaaataaa aatttagatg agccaagtta taaacgtaaa aatattgaaa
     3541 ttccagtttc taatcaagaa gttaaaccaa aaatttttac aaaagagctt gaacttagag
     3601 agaatttgat aaaaaaagaa aaactagaac aagaatacaa agcctatcaa aatgaaattt
     3661 tagaaaataa agtaaaacaa gaaattaaaa aattagaaga atatgatgcg ataaattcaa
     3721 gcgatattat agaagggaat aaatatagtt ttaatagccc aaaaacaatt aaaacagaaa
     3781 cagaagaatc agacaaaata aatgaaaata aaaatctaga taaagcagac aatatctttg
     3841 gatttgctcc cattgtagaa gagttaaatc atccttatat agaacctact cctataaaaa
     3901 atataaatga aatagttata gaagaaaaaa atacactcga ttttatccaa aatacagaaa
     3961 ctaaaatcga taatgaaaaa acaaatgatc aagaagttaa acttcaaaaa gcagttttag
     4021 ccaaagaaat tgctattaac caagctttat tgcgtgaaat agagcagggc gaagtagaaa
     4081 aaccaaaaga tttcaccttg ccgccattag attttttagc taatccaaaa gaacacaaac
     4141 aagaaatcaa tgaaagtgaa atagataaaa aaatttataa tcttcttgaa aaattgcgtc
     4201 gttttaaaat aggcggcgat gttataagca cttatgttgg tcctgtggta actacttttg
     4261 aatttcgtcc tagtgcagat gtgaaagtaa gtcgtatttt aaatttgcaa gatgatttaa
     4321 ctatggcttt aatggcaaaa tcaatccgta ttcaagctcc aataccagga aaagatgttg
     4381 taggtataga agttccaaat gatgaaattc aaaccattta tttaagagaa attttacaaa
     4441 gtgaagtttt taaaaacgct aaaagtcctt taaccatagc tttaggtaaa gatatagtag
     4501 gcaatgcttt tgtaaccgat cttaaaaaac ttccgcattt actcatcgca ggaacgacag
     4561 gtagtggtaa aagtgtgggg ataaattcta tgcttttaag tcttttatat cgcaactctc
     4621 caaaaacctt gcgtttgatg atgatagatc ctaagatgct tgaatttagc atttataatg
     4681 acattcctca tcttttaact cctgttatca cagatccaaa aaaagcagtc aatgcgcttt
     4741 caaatatggt agctgaaatg gaaagacgct atcgcttaat ggctgatgca aaaaccaaaa
     4801 atatagaaaa ttacaatgaa aaaatgaaag aattaggcgg agaagaactt ccttttattg
     4861 tagtaattat cgatgaactt gctgatttga tgatgactgc gggtaaagat gtagaatttt
     4921 atataggaag acttgcgcaa atggcaagag caagtggaat ccacttgatt gtagctacac
     4981 aacgaccttc tgttgatgtt gtaacaggac taattaaagc gaatttacca agtagaattt
     5041 cttataaagt agggcaaaaa attgactcta aagttatttt agatgctatg ggtgctgaaa
     5101 gtttacttgg aagaggggat tgtttattta ctcctcctgg aacaagctct atagtgcgtt
     5161 tgcatgcgcc ttttgcaagc gaatttgaaa tagaaaaaat cgtggatttt ctaaaggatc
     5221 aacaaagcgt agaatatgat gaaagctttt taaaggatca acaaagcgta ggtgttacaa
     5281 caaatgaaag ctttgatggg gaagtagatg agctttatga agaagctaaa agagtaatct
     5341 tagaagatgg aaaaacaagc atttcttatt tacaacgccg tttaaaaatc ggctataacc
     5401 gctctgcaaa tattattgaa caacttacgc aaaacgggat tttaagcgaa cctgatgcca
     5461 aaggacaaag ggaaatcttg taagattttt cttgtgtttt tgatatataa aactgattac
     5521 aaaagaagaa atttaaaaga caaaagcccc gtaaaaaggg cttaaaaatt atttatctct
     5581 aagatttaat tcagtaatta atttactata agaattataa tcttttcttt taagataaga
     5641 taaaagtctt tttctttgac ctacaagttt tagaagtcct aatcttgatg aaaagtcttt
     5701 tttgtaaatt tttaaatgtt ctgtaagttc tgcaattctt gcagttaaaa gagctacttg
     5761 aacttctgtt gaaccagtat cacctggttt tttagcgaat ttcgcaacta tttctgcttt
     5821 tttggccgaa tctaaagcca tgatagacct cctgattggt aaaataataa aattaaagaa
     5881 ctgtaatttt atcttaaaaa gcaaaaaata aactgaattt atctttttta gaaggttttg
     5941 tcaaaattta agtctttttc taagaattat ttattataat tacagctatt tctgtagtta
     6001 taacaaggag aatctgtgct atttaccaaa gctagcgaat acgctttact ttctttaatt
     6061 tatatttctc aaaaagaaac acctcaagat gtagattctt tagctttaga gcttgatatt
     6121 cctaaaagtt ttttagctaa aattttacaa actttagcta aagatggctt gttaaaatcc
     6181 tttaaagggg caaaaggtgg ttttgtttta atcaaagaac caagtcaata tactataaaa
     6241 gaaattgtta atagtgctga aaaaaaggat atcagtgtat ttgaatgcag tggtggcact
     6301 tgtccaaata ataaagaaga aaattgcacc ttaatgccta tgttagtaaa tttacaaaat
     6361 aaagtagatg aatttttaga ttctattact ttagaagata ttataaaaaa taatggcaaa
     6421 aaataaaata gtcgatttag tttttccttt cttggggcct ttaatcgctc ctgttttaaa
     6481 agctaaaagc ttgactattg ttggtttttt agtttgtatt ttagctatta ttatagttcc
     6541 tttaccaagc cctattttgg actttttctt ggctttaagc atagctttat cggtattaat
     6601 tattttaatt tctatttata tacccaaacc gacagattta acaacttttc caactttaat
     6661 cttgattatc actttattta ggctttcatt aaatatagct accacaagga tgattttaag
     6721 cgaagggcaa aacggccctg aagctgtgag tgagattata gcagcatttg gagaatttgt
     6781 tgttggtgga aatatggtca ttggcgtgat tgtattttgt attttagtat tgattaattt
     6841 catggttgta acaaaaggta gtacaagggt ttctgaagta caagcaagat ttacacttga
     6901 tgcgatgccg ggtaaacaaa tggctattga tgcggattta aatgcaggac ttattgatga
     6961 acaaaccgct agagcaagac gtcaagaagt tattgctgag gcaaacttct atggtgcaat
     7021 ggatggttct tctaaattta tcaaaggaga tgctgttgca ggaattatca taactattat
     7081 aaatatcata ggtggttttt taataggatc ttttcagcac gatatggctt taagcgatgc
     7141 tgcttctacc tatactattt taaccatagg tgatggactt gtatctcaaa ttccagggct
     7201 tattacttct actgcaaccg ctataattat cactcgtgca agcaaagatg aggaaaattt
     7261 tgcagaagga actttaactc aacttttaag cgaatatcgc acgcttttaa tagtaggttt
     7321 tgtacttttt atctttgcgt tagtgcctgg tttgccaact ttatccttgg gctttatggc
     7381 tttagtattt ttaagccttg gctatcttac caagcaggtt aaggaaggta aaattgatat
     7441 aactacagtt aaaaaaagca aaccaagtgc cgcagttgca tctcaaagtg gagcaggtgg
     7501 gacaacggca gcgcctgcta agaaaagcga agaagaaatt ctcaaagaag aagagcacaa
     7561 gattaacgat atactcaaag ttgaaatttt agaacttgaa cttggatacg gacttattaa
     7621 gcttgctgaa aacgaactta cagaaagaat tcgctcaatg agaagaagta ttgctgaaag
     7681 tttaggattt ttaatgccaa aaataagaat aagagataat ttaagactta aaccaaatga
     7741 gtatagtttt aaactcaagg gcgtgtctat agcaagtgct gaaatttatc cggataaata
     7801 tttagccatg gatagtggtt ttatcacaga agagatagaa gggattgcta caaaagaacc
     7861 cgcttttaac tctgatgcac tttggattga tgcgaattta aaagatgaag caacattaaa
     7921 tggctatata gtaatagatc ctgcaagtgt tatttcaaca catatgagcg aacttatcaa
     7981 agcgcacgca agcgaacttc tcacacgcca agaggtacaa aatcttcttg ataaggttaa
     8041 aaatgattat ccaatcatcg tagaaggtgc tttaggtgtt gcatctgtaa gtcttattca
     8101 aaaaattctc aaagacttgc ttaagcatca cataccaatt aaagatatgc ttactatttt
     8161 agaatctgta agcgatatag cagaagtaag caagagtttt gatatgatta ttgaacatgt
     8221 aagggcgtcc ttggctagga tgattacaaa tatgtattta gatgataaag gaaatttgga
     8281 tatttttatc ttagactctg ctagttctgc ggttttaatg gaaaatgtac aatttagaga
     8341 tggaagttat cacttgcctt taagtgtagc tcaaacaggt actttagtag atactctaag
     8401 ggctgaagtt gccgcagtag caaatggtcg tatcaagcct tttatacttt gcgttgaacc
     8461 gcagcttaga aaattcattg ctgatatttg ttataatttt agcattaata tagtagtgtt
     8521 aagttttgca gaaattgcag aaaatacaaa ttttaatacc gagggtatta ttaggataga
     8581 actttaagga atataatgaa aatttatcat ctttcacata cagatcttga tggctatgct
     8641 tgtcaattta tagtaaattt ttattttaaa aatgtgaaat tttataattc taattatggc
     8701 aaagaaatta atgaaaattt taactctatt ataggcgata tagaaaaaga tgaaaatttc
     8761 ggaaaagcta ttattctaat aacagattta aatttaaatt taaatcaatg cgaagaattt
     8821 gaaaaaattt gcaaagagaa aaatactaaa atttttcttc ttgatcatca tcaaagtggc
     8881 gaagaatgtg ctcaaaaata ttcttggtat ttacttgatt ctaaaagatg tgcaactaaa
     8941 atcgtttatg attttttctc taaaatctgt actcctgttt tagaactttc aaaatttgtt
     9001 gatgtggtta atgctgttga tatttggcta agcgaggatg aaaattttga acttggaaag
     9061 gtttttttag gcttgattgc caatgcaaaa gaaataaatc gtgtaatgtt taaagaatct
     9121 caaattgatt atatgttttt cttgcttgat aaggcttgga aatttatagg aaaagaaaat
     9181 gcaaatattt tactcgataa tgctactcat tttataaaaa aggattattt tgccagaaaa
     9241 aatgatgata ctctttctaa tttaatttct tattttgtag ttgaaaaact aagtgagcta
     9301 aaagaaaatt ttagcataga atatgaaggc cataaaggca tcttaacttc aaatataggc
     9361 aatacttctg ttattggaaa tgatttttta gtaaaaaatc ctgattatga cttttttatt
     9421 gatgttagtt ctagaaaaac cttaagtttt cgtgcaaatg gaaaaataga tgtaagttta
     9481 atggctaaaa atttagtagg tggtggcgga cataaaaatg ctagtggtgg actttttgcg
     9541 acatttaaag atggagcaaa ttataattat attaaggctc aaattattga tttaattaaa
     9601 agcaaagaac ttaaaaagga aaacaatgaa tcaaaacaat aataaaacct taaaaaatga
     9661 attagaagat ttacaatatg agcttagcat agttttagaa gctatgcttt tatacgctgg
     9721 agttaaaaga gaaaaattag aaaatgcaat agaagcttat attgataata tagataatgt
     9781 actcgaaatt tccaacaaag aaggggttga tgaaatttta gaagtggtgg aatttctaaa
     9841 aaataaatac aaagattttt ttcaatgaaa aagtatattt taattttttt tagtttatat
     9901 tctttaagtt ttgctaatat ttatgaaaaa ttaaatgatt ttacttatga aaaaaaaccg
     9961 aataaagatt ttaagattca agaagttaaa ttagtgcaat tttcacaaga aaataaagat
    10021 tgccttgaac tttt
//
LOCUS       DARGBD010000060         9842 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.060, whole genome shotgun sequence.
ACCESSION   DARGBD010000060 DARGBD010000000
VERSION     DARGBD010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9842
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.060"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(85..1332)
                     /locus_tag="SFZ04_001222"
     CDS             complement(85..1332)
                     /locus_tag="SFZ04_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8065493.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            complement(1329..2003)
                     /locus_tag="SFZ04_001223"
     CDS             complement(1329..2003)
                     /locus_tag="SFZ04_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8065494.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(2079..3497)
                     /gene="htrA"
                     /locus_tag="SFZ04_001224"
     CDS             complement(2079..3497)
                     /gene="htrA"
                     /locus_tag="SFZ04_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HEG8065495.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKNGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            3698..4591
                     /locus_tag="SFZ04_001225"
     CDS             3698..4591
                     /locus_tag="SFZ04_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HEG8065496.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            4607..4981
                     /gene="hspR"
                     /locus_tag="SFZ04_001226"
     CDS             4607..4981
                     /gene="hspR"
                     /locus_tag="SFZ04_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HEG8065497.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQNK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            4988..6613
                     /locus_tag="SFZ04_001227"
     CDS             4988..6613
                     /locus_tag="SFZ04_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG8065498.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTTLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            6623..6955
                     /locus_tag="SFZ04_001228"
     CDS             6623..6955
                     /locus_tag="SFZ04_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065499.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGGKKEKH
                     KNYLKDYE"
     gene            6952..7572
                     /locus_tag="SFZ04_001229"
     CDS             6952..7572
                     /locus_tag="SFZ04_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8065500.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSNFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVNLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            7628..9622
                     /locus_tag="SFZ04_001230"
     CDS             7628..9622
                     /locus_tag="SFZ04_001230"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEG8065501.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWNNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKKFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            9619..>9842
                     /locus_tag="SFZ04_001231"
     CDS             9619..>9842
                     /locus_tag="SFZ04_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family peptidase"
                     /protein_id="HEG8065502.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNNG
                     KNIPTFTHPKNQEKVLAIFSLPYKNPPQNT"
BASE COUNT         3589 a         1524 c         1409 g         3320 t
ORIGIN      
        1 aagtaaaatg tgattatagt gaaattaaaa aactttgtca agggtttttt cacaaaaatg
       61 cattttttat gtaaaaaaat taatttactc cttaacaata acacttttta aatttctaaa
      121 ataaaacaaa tttaccccat cttcatataa ataatcaagc ttcattccat gtgtttctaa
      181 aatagtattt acaatataaa gccctaatcc aaaacttgat ttttgttttg atccttgagt
      241 aaaagcttga gtatagtatt ctaaagtatt gttaagctca ggaccacgat ttttaaaaca
      301 aatataatca tctataatat caatttgcac aaacccatct tcagaatgtt taataccatt
      361 atctatcata tttttaatcg ccgtagtaaa aagtttaaaa tccacattta caaaaaaact
      421 ttcttccata aaaatacgta tattgctatc atctcgcatt gcaatttctt tggcttcatc
      481 taaaacatct aaaatattgt atttttttct atttataaaa gcagcccctg aagtaatttg
      541 ctcaatagca gcaaattcat taattaaaat ttcaagtcta gtaaaaaccc catttaagcg
      601 ctctttatat ttattatctt ctatcatttc taaagttaag agccctttag taataggagt
      661 tttgagttca tgcataatat ttcttaaaaa aaactgacga gattggttta actttcgaat
      721 ttgaacaata gcttgataaa aagcttcact tacttgtgaa atttcatcca ccccagtgct
      781 tacatcttct atatcaccaa gctttccttg ggcaaattta tcaatttgtt ttttaagtct
      841 tttaagtggt tttaattttt taaatatata aatataaagc aatacaagaa tacaaatcac
      901 agctacagct atagctttga taataaaata cctataggtt tgataatctt gatccttata
      961 aagataaacc tttccatcat aaataatatt taaatacacc tgtctattat aagaaataat
     1021 ctcgattaag ccattgttaa cctcaaccct agctaaaaca tcacctctaa aaagaatttt
     1081 acggatctgc tttgcttctg ttatctcatc cattttatta taattttttg tctgctcttc
     1141 aaattctttt tcactgataa ctcctgcaaa atttaagagc cttgcattag ctatcaaaga
     1201 atattttgtg tttaattctc tagtataatt ttgctgatcg tattctataa gccacaaaaa
     1261 gccaagtata acactaaccc cagcaaaaat aaaaataaaa gttatagtat aaaaaatcga
     1321 agatttattc attgagtaag cttataacct attccacgta tagagtgaat atattttgga
     1381 gtttttggat catctcccat cttttgacga attctactga taataacatc tatactttta
     1441 ttactagaat cctcactaat agaagaacaa ttataaacaa gctcttcacg acttaccact
     1501 ccaccctctt ttttaatcaa atagcttaaa atatcaaatt cagcattagt taaagtaagc
     1561 tcttgtcctt tcatggtaat aatatgctta tattgatcat aaacaagatc ttttacgctt
     1621 tttgctatgg cgctttttgt atttgaaata cgtcttaaat gacttttaat acgtgcttgt
     1681 aattcttttg gattataagg ttttggtagg taatcatctg ctccaagctc taaagcatta
     1741 accttatctg taatatcatg tcttgcgctt gaaacaataa taggcgtatc atacttttta
     1801 cgaatctctt cacacacttc aagcccatca agccctggca aagaaaggtc taaaatgata
     1861 agctgatatt cttttaatgc aagcttagaa agacctatat aaggttcatg agctatatca
     1921 actttcatat caaatttttc caaatattca gctgtaattt ctgctaattc taaatcatct
     1981 tctatcataa gaatatttgt catagttttc ctttatttta aacttaattt taattttaaa
     2041 ctaaaattta taacgaaagg aaaatccttc cgttattttt atttaagcac aagcaaagtc
     2101 gcaaaaccat tgcgatatac ccaaactttg gtaaattctt ttttattaac ttgttttaaa
     2161 gcttgttcta aatcttttaa atttttaatt tcactttgtc caacacctat gataatatca
     2221 ccctcttgga aaccagaatt ttttcctttg ctcttttctt taacactatc aaccaaaaca
     2281 ccattaacat cttttggaat ttgcaaacga tccttaagtc ttggatctaa atttctcaaa
     2341 ctcaaaccat caatcaaatc gctttgtacg cctttaggat tttctttttc acctttaaga
     2401 ataaaacttg cttgcttatt ttctccatct ctttcgtaac ttaatgaaat tttttgacca
     2461 atctctaaag ttcctatata atttttaaga tcaataggac tttttataac cttatcatta
     2521 actttagtaa ctaaatctcc acgcttaagc cctgcttcat cagcacttga acctttttga
     2581 acatcagtga ttaaagctcc ttcttgattt ttgtaagctt ttttagtatc accttgcaaa
     2641 gctaaaatag tcacacctaa aaatcctcta tcaatcttgc ctttttcaat aagtttttta
     2701 gctatatctt taaccatatt tgaaggtatg gcaaaaccta tgccgttatt tccaccacca
     2761 cgagaaagaa tagctgaatt aatacctact aaatatccgc gactatccac caaagctcca
     2821 cctgaatttc ctggattgat agaagcatct gtttgtataa aattttcata ttgatttaaa
     2881 cctatattgt ctttatttaa agcagatatt atcccacttg taacactaaa accaactcca
     2941 aaaggatttc caagtgcaaa aacaacatct ccttccatta aatcatcaga atttgtaaaa
     3001 gtaatagctg aaagattatt agcctctatt tttataacag ccaaatctgt ttttggatct
     3061 ttacctataa gttttgcttt atattctatg tcgcttcctg gtaaattcac tgtaatcgta
     3121 tcagcatcat ctacaacgtg attatttgtt actatataac cattttttga aataatcacc
     3181 cctgatccca aagaactcac cacttcttta tcattttttc cttttctttg aggaaaatca
     3241 aaatcaaaaa attgtttaaa ataaggatca ttaaaaaaat catccaaagg gcttggacga
     3301 tttgctcttg taatagtttt tgaggtggaa atattaacca ctgatttttt tgcatcttta
     3361 atagaatcat gataagaaag cactgcattt ccagcagcag gattcacacg attagccgtt
     3421 gcagtcgatt cgttaaaatt aatacttgca gcaaataaag cacttgctaa acttaatgat
     3481 aaaaaaatct ttttcatttt atttcctttt gttcttaaag ataaattatc tcgtaaaata
     3541 ttttactgtc ttcatagtat aaaaccgaaa atttacaaaa ttgtaaataa aaccttgagt
     3601 gataaaaatt tataaaactt gattgactta ggctaaagtt tatgttataa tttaatcctc
     3661 tataataatc aagtaaaaat ttttaaggaa atataacatg aatagtttat acgaaactct
     3721 tggagttagc aaaaacgcta gtgcagatga aataaaaaaa gcttaccgtc gcctagctag
     3781 aaaatatcat cctgatatca acaaagaaaa aggtgctgaa gaaaaattta aagaaattaa
     3841 tgctgcttat gaaattttaa gtgacgaaaa aaaacgagct cagtatgacc aatacggcga
     3901 ttctatgttt ggtggacaaa gttttcatga tttttcaaga aatactggtg gggtaaattt
     3961 ggacgatatt ttaaaagatc tctttggagg aggctttggt ggacgctcaa gagggggttt
     4021 taacggcttt tcttcaaaag gctttagcag tggttttgga ggatttggag gttttgaaga
     4081 agaaatttta gacagcaatc tagagcttca cattcctttc gaaaaagctg ttaaaggcgg
     4141 ggaacatagt tttaattttc aaggcgaaac cattaaattt aaaattccac acggtataaa
     4201 agaaggtgag aaactaagaa ttcgctctaa aggaaaacaa agcagaaatg gagctagagg
     4261 tgatttaatc attattgtaa aaatagaaga aagtcctatt tacacaagag aagatgatga
     4321 tttatatcaa aaagttgata tttctttaaa aactgcactt tttggtggaa aaataaatat
     4381 aaaaacactc aaagaaggca aggaagaagc gacaattaac ataacgccta attcaaaaaa
     4441 taaccaaaaa attcgtttaa aaggttatgg tgtgcaaaat agaaaaagtg atatttatgg
     4501 ggatatgtat ttgattttaa atgttgtttt gccaaattta gatacccttg atgaaaaatt
     4561 tatagaactc ttaaaagaaa aattacctta aagaaaggaa taaaatatgg aacagcatta
     4621 tgatgaacct gtatatttaa tcagtgttgt ggctaaagtt ttaagcatac atccacaaac
     4681 cttaaggcaa tacgaaagag aaggattgat agagccaagt agaaccgatg gcaaaataag
     4741 actttattct caaagagata ttgaccgtat taaacttata ttgcgtttaa caagagacat
     4801 gggaatcaat cttgctggag tagatgttat cttaaaattg aaaaaccaac ttcacgaatt
     4861 tgaaaattta attgatgaac tacgcttaga attaagcaaa caacaaaata aagaagcggc
     4921 tagtaaagcc gttgttaagc ataaaaatag ctttgatttg attttttatg agaaaaaata
     4981 aaaaataatg gataattttt tagaaatttt tttaatcacc gttgctatag ctatagtttt
     5041 aaatgtcata tttaaaaaat ttgaaattcc aactatcatt ggatatatag ctgctggaga
     5101 aatcatttct gaaatttatc atttaagtgg caaaggcgaa atcactcata tagccgaatt
     5161 tggtatagtg tttttaatgt ttaccatagg gcttgaattt tcttttaagc atttaatggc
     5221 aatgaaacaa gaagtttttt taaacggctc tttgcagatg cttacttgtg gctttgtttt
     5281 tatgttactt gctataggaa ttttaggact tggagataaa agcgctacta tagtaggctt
     5341 tgcactagcg ctttcttcaa ccgcagtggt gcttaaaatt ttaaatgata atggcgatat
     5401 caatgagcaa tatggtagaa aagcattggg aattttgctt tttcaagata tagccgttat
     5461 tcctttgctt ttgcttgtag atattttttc atccaacaat caaaacatag aaaaactcct
     5521 ttttaccact ttaatttcag cacttatttt aatcacttta ttatttttca taggtaaata
     5581 tctagtggat agaattttta gactcattat ccacacttct tctcaggaaa tttttattag
     5641 tactgtttta tttatggtta ttggagcaag ttttttagca aattattttg gattttctta
     5701 ttctttgggt gcttttatag caggtgcttt gatagcagaa acaaaatata aacacaaaat
     5761 agaagcggac ttgatcccat ttagagattt gcttttaggg ctttttttca taactgtagg
     5821 catgcaaatt caacttgatg tagtggcaca aaattggttt ttaatcatag ttttaaccct
     5881 tcttgtaatg gctttaaaat ttggcatagt ttttggcttt ttatttcttt acaccaaaaa
     5941 aagagtagcg cttaaaacag cttttgccat agctcaaatt ggcgaattcg ccctagcaat
     6001 tttttctctt ttacaagcaa aaaatatgct tgatatcaaa acttcacaaa ttttaattgt
     6061 tgtttctatt ttaaccatga ttatcacgcc ttttatttta aacaatataa gaaaaattac
     6121 caatgttgta gaagatatag cacttaatac caacgctgtg caaaatattg acagcaatat
     6181 caagcttaaa aatcatcttg ttgtttttgg ctacggacgc ttaggacaag aagtcgtaca
     6241 aaaaatcaaa aacacaggcg taccttatct tgttttagaa agtgatttaa atttagtaga
     6301 acttggagtt agtcgaggtg aaaatgtcgt ttttgccaat gctgctcaag aagaaacctt
     6361 aaaaattgcc aatatagaag aatgtgccgt agctattatc acagttacaa atgaagccaa
     6421 acttgaaatt ttatgtcaag tgctagctaa ttatccaaaa cctatagaca ccatcattca
     6481 tgtaaatgga actttaaaaa agatgctttt ttctagcata gatgaaaata tacgcatcat
     6541 tcgctctgaa aaagtaatcg ctagaaattt agttcaagaa gcgctagaat gccgcattca
     6601 caaaaatacc taaggaagaa ttttgacaaa aaatgaagaa aaagccttac gcgtaaaata
     6661 cctaagaaat cttgaaaaat ttttcaatgg cgctatatct gcacttaaaa aagaagattt
     6721 tgataaaact aaatttgaag aaagaatgtt aaaaaatgct aaattttttg aaaaaaatcc
     6781 cgcggtaaat cttaactcaa cctatgcaaa aaatcttgaa ttttttgtca atgcttgttt
     6841 agatttttcc aaagaaaaaa acgagctttt aaatcttgcc aatgctttag ataagcaaaa
     6901 aaaacaaggt gggaaaaaag aaaaacataa aaattattta aaggattatg aatgattaat
     6961 gtattttttg atatggatgg aactttaatc gatagtgcaa atgccatttc ttgtgcagtc
     7021 aatgaaataa gacaggattt aaatctagcc ccactttcaa gagaaatcat tatgcaaacc
     7081 atcaatactc ccaatattga ctgggcaaaa gaactttata atatagaaaa tttccatcat
     7141 tctaatttta aagaaggcta tgaaaaatat tttgtcaagc actatgaaca aagcgtggtg
     7201 ctttttgaag gagtaaaaga acttttagaa tttttaaaaa gcaaaaattg ttttttagct
     7261 attgctacta acgccccaca aagctcactt tcaaacatac ttaaaaaaca cgatatcatt
     7321 ccttattttg ataaaatttt aggcgtaaac ttgggcatag aacccaaacc tcatcctatg
     7381 atgctagagc ttttaaaaag cgaggctcca tataaaacaa gcgtttttat aggagatagt
     7441 caaaaagata aagaatgtgc taaaaatgct aatttgcctt attttcatgc caaatggtat
     7501 caaaaaaatt taaaagaaaa tgaatttagc aacgctagtg aacttaaagg ctttttgcaa
     7561 aagtatttat aagtttttta atgaaatttt agttaaaatt agaaataaat tttaaaaaga
     7621 gtaaattatg agtgaattat taatagaaat tggtacagaa gaattacctg ctattccttt
     7681 gctaaaagaa ttagctaata tagaaaaaaa atggaacaat gttttagaag aataccgctt
     7741 ggtaagtgat tttaaatttt attatactcc gcgtcgttta gttttttttc atgaaaattt
     7801 tgcagacaaa caagaagata gctttgctga atttatagga gcacctaaaa atgttgctta
     7861 taaagatgga gttttaactc ctgcgggaca aagcttcctg caaaaagcaa ggatcagtga
     7921 aaatgaactc tcttttaaag aaatcaaagg caaggaagtt ttgtaccatc aaaaagctat
     7981 taaaggtttg caaagtcaag aaattttagg agaaatggta gaaaaatttc taaaaagtct
     8041 tagttttggc aaaagtatgc gctggggtgc aaattctttt gaattcatcc gtgcgatccg
     8101 ttctatagct tgcattttaa atgatgaact tgttaatttt caaagctatg gagtaaaaag
     8161 tactaaaaaa actttcattc acagaagcgt aagttatgat ttgcaagatt ttaacaatgc
     8221 aaaagaatat tttgaactac tagaaaaaaa ctatatcatc cttgatccaa tcaaaagaaa
     8281 ggaaaaaata cttgagcaat ttaaactcat agaaagtcaa aaaaatatac aaattggaga
     8341 agatgaagag cttttagctg aagtagttgc tatcacagaa tatcctaatg cacttttagg
     8401 aagttttgaa gaagaatttt tagaaattcc tagcgaagta atcatcactt caatgagaga
     8461 aaatcaacgt tattttgcag tttttaacga caaaggctta agtaatcatt ttatagtagt
     8521 aagtaatgca gtatgtaagg attattcaaa aatcatacat ggaaatgaaa gagttttgcg
     8581 tgcaagactt agcgatgcaa tgttttttta tcaaaatgat ttacaaaatg gcttaaaacc
     8641 cgaaaaactt gccaaaatga cctatcttga aggtttaggc acaatgcaag ataaaagttt
     8701 aagagagatt aaaattgctg aaattttatg tcaaatgctc cataatgata aaatcgaaaa
     8761 tatcagcaca gcactaaaat acgccaaagc agacttagcc acacaaatgg tttatgaatt
     8821 tactgatttg caaggcatta tgggaagtta ttatgcgcaa aaaatgggct tagattatca
     8881 aatttgctta gccatcaaag aacaatatct tcctaattcc gaacaagctc cacttccaag
     8941 tacagaattt tcaagcatag tagcccttgc aaacaagctt gataccctta taggactttt
     9001 tagcatagga aaaattccaa gcggaacaaa ggatccttat gccttaagaa gagctgccaa
     9061 tgggatcatt aaaattgctt taaatttaaa taaaaaattt gatatccaaa ttttattaga
     9121 aaaactttca aatcattata aaagctttga tatgcaaatt ttaaaagatt ttatttttga
     9181 aagactttat actttttata cagtcaatgc ttcttttgta aaagcggttt taagctcaca
     9241 aaatacagat cttatccata tcaatcaaag cgtaaatgct cttataaaac ttagcaaaaa
     9301 agataatttt aatgaaaatt ttgcaacctt taaaagacta gccaatatcg ccactaaaaa
     9361 tcctcataaa gttgatgaaa gtctttttgt tcaagaagca gaaagtaaac tttacaaagc
     9421 ttttcaagaa aaaactaaag ccaactcttt acaagaaaaa cttgaaaatc tttttgcact
     9481 taagcctttt attgatgagt tttttaatca agtgatgatt aatgctgaag atgaaaaact
     9541 taaaaataat cgccaagctt tggtttatga aatttatgcg gagtttttaa aaatcgccga
     9601 tcttaaagag ttaagcttat gaaagcctta tggctttttt taagccttac tctttggctt
     9661 tttggagctc aaaatttaga actcatcaaa ggtcaagctt tatttttgga gctagataag
     9721 aaagattttt tatctttaaa aaataatggt aaaaatattc ccacttttac acatcctaaa
     9781 aatcaagaaa aagttctagc tattttttcc ttaccttaca aaaatccccc gcaaaataca
     9841 aa
//
LOCUS       DARGBD010000061         9787 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.061, whole genome shotgun sequence.
ACCESSION   DARGBD010000061 DARGBD010000000
VERSION     DARGBD010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9787
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.061"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..250
                     /locus_tag="SFZ04_001232"
     CDS             <1..250
                     /locus_tag="SFZ04_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEG8065503.1"
                     /translation="KKQKIIIKLKAKANEFLNYAEVITKIKTWYKKEEFYTLEESLDF
                     VSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKLKKKY"
     gene            329..1000
                     /gene="hsrA"
                     /locus_tag="SFZ04_001233"
     CDS             329..1000
                     /gene="hsrA"
                     /locus_tag="SFZ04_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HEG8065504.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            1113..1358
                     /locus_tag="SFZ04_001234"
     CDS             1113..1358
                     /locus_tag="SFZ04_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEG8065505.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1358..2818
                     /locus_tag="SFZ04_001235"
     CDS             1358..2818
                     /locus_tag="SFZ04_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG8065506.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTYEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2815..3612)
                     /locus_tag="SFZ04_001236"
     CDS             complement(2815..3612)
                     /locus_tag="SFZ04_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065507.1"
                     /translation="MRLLVLFFLILPLYSVELISYNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTANNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVVFDHANKRYTMIIGNSNV
                     LLESVEIPEEQIIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(3613..3921)
                     /gene="fliN"
                     /locus_tag="SFZ04_001237"
     CDS             complement(3613..3921)
                     /gene="fliN"
                     /locus_tag="SFZ04_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEG8065508.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(3921..4358)
                     /locus_tag="SFZ04_001238"
     CDS             complement(3921..4358)
                     /locus_tag="SFZ04_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HEG8065509.1"
                     /translation="MLKILEYSITHFCEHILKLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRNCYFRIGYCK"
     gene            complement(4429..5178)
                     /locus_tag="SFZ04_001239"
     CDS             complement(4429..5178)
                     /locus_tag="SFZ04_001239"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEG8065510.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQSVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(5171..6349)
                     /gene="trpB"
                     /locus_tag="SFZ04_001240"
     CDS             complement(5171..6349)
                     /gene="trpB"
                     /locus_tag="SFZ04_001240"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEG8065511.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(6346..6945)
                     /locus_tag="SFZ04_001241"
     CDS             complement(6346..6945)
                     /locus_tag="SFZ04_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEG8065512.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(6932..8533)
                     /gene="trpD"
                     /locus_tag="SFZ04_001242"
     CDS             complement(6932..8533)
                     /gene="trpD"
                     /locus_tag="SFZ04_001242"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEG8065513.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(8530..9780)
                     /locus_tag="SFZ04_001243"
     CDS             complement(8530..9780)
                     /locus_tag="SFZ04_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEG8065514.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKA
                     KEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKHGVVLGSSPE
                     FLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKF
                     GTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALE
                     ITSELEDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQK
                     EYAEICAKRKALLVAFENLKKENQ"
BASE COUNT         3473 a         1710 c         1170 g         3434 t
ORIGIN      
        1 aaaaaaacaa aaaattatta tcaagcttaa agctaaagca aatgaatttt taaattatgc
       61 agaggtaatt accaaaatta aaacatggta taaaaaagaa gaattttaca cccttgaaga
      121 gtctttagac tttgtaagct taaatttaaa aaaagatttt cctaatttaa ccaatcttaa
      181 cataaaaatt ttcaaacccc atataataaa aaatgctaca gttggggtta aattgaaaaa
      241 aaaatattaa ttttttttta aagatatcta aacatttact taagctatga tataattctt
      301 taaatttttc ttaataagga tagaacaaat gagaatttta gttatagaag atgagattag
      361 cctaaataaa acaattatag acaatcttaa tgaatttggt tatcaaactg attcttctga
      421 aaattttaaa gatggagaat actttatcgg cattagacat tatgatttag ttttagcaaa
      481 ctggacttta cctgatggag atggagcgga acttgttaac actattaagc ataaatctcc
      541 aagaacttcg gttatgatta tgtcttcaaa aacagacaaa gaaacagaaa tcaaagcttt
      601 gaaagctgga gctgatgatt ttgttaaaaa acctttagat tttgatattc tactcgcaag
      661 aattgaagca agactaagac ttggcggaac caatgttatt aaaattgaag acttagttat
      721 tgatccagat gaggaaaaaa ttacttataa aggtcaagat atagaactta aaggaaaacc
      781 ttttgaagtt ttaacgcact tagcaagaca ttcggatcaa attgtatcca aagaacaact
      841 tttagatgcc atctgggaag aacctgagct agtaactcca aatgttatcg aagtagctat
      901 caatcaaatt cgtcaaaaaa tggataaacc attaaatata tctaccatag aaacagttcg
      961 tcgtagagga taccgtttct gcttccctaa aaaatcttaa caattttgca ccttcggtgc
     1021 aaaaaattta tctttatttc tatttttata ttttatttaa gtttggttat tgtataaact
     1081 aaaattattt tttaaatttt tgaaaggtta tgatgtctct tttaattaca aaagactgcg
     1141 tatgttgtga tgcttgcaga gaagaatgtc ctgatgaagc tatttatgaa aatagtccaa
     1201 tttatgtaat agaccctgat ctttgttcag agtgcgttaa tgatttttca gagcctgcct
     1261 gtattgttgc ttgcccatat gaatgtatca ttcctgatcc tgataatgta gaaactatag
     1321 aagaattaaa actcaaacat agagatagag aattttaatg gcaaaaaaaa cagccgttgt
     1381 tgatcttggc tcaaactcca ttagaatggt gatttttgaa aaaacttcta gatatggttt
     1441 ttatacaact tacgaataca aacgcaaagt aagacttgga gaaaatgctt ataataatgg
     1501 caaaattctc caagaagaag ccatgcaaag agccgaagat gccttagctt ttttcaaaca
     1561 atgcgcttta aagcataagt gcaaaaaaat atttatagta ggcacatcag ccttaagaga
     1621 tgccccaaat tcaaaaaatt tcattaaaag aatcaaagat aatctgtctt taaatatacg
     1681 ctgtatagat ggaaaaagcg aaagttactt aggtggtctt gcagctctaa atttattaag
     1741 tccttttaaa gatggaacca ctttagacat aggtggtggt tctagtgaat tgtgtttaat
     1801 aaaaaataat agaattattt cttgcatatc tcttgatatt ggcactgtta ggctaaaaga
     1861 attgttctat gatactggaa aaatggattc tttagaagaa tttataaaac caattttaga
     1921 acaaattcct aaagaatttt gcaatcaaaa ccttattgca ataggtggaa gcttaagagc
     1981 aatatctaat tccatcatgc aaaaaaattc ctatccactg aaaaatttac atgattttcg
     2041 ctatatgcta gatgaagaaa aagggcatat tttaaaaatt tttaattcaa acttagactc
     2101 tttaatcaat tttggcataa aaaaggatcg ttttgatacc attaaagagg gtatatttat
     2161 ttttttaaag attgcggaaa aaataaaagc caaacaagtt atcacgagtg gggttggaat
     2221 cagagaagga gtttatttgc aagatttact tcgtcctaaa atcacttttc caccaaattt
     2281 taatcctagt ttaaaatgtt tacaagataa atttttacaa tcaaaacaaa aaaataaaac
     2341 tccacatttt gctctgcaaa tttttacaac ccttaaaaat cttcataaac ttaacgataa
     2401 ctataagcat actttactaa atgctgctaa attatgccat attggagaat atttaaattt
     2461 ctattttgct aatgaacact ctgctcattt tgtactaggt ggattaaatt atggattttc
     2521 acataaagaa aaagctttaa ttgctagcat tattaagctt aatggaaaaa aagttaaccc
     2581 ttataatctt gaaccctata aacaactttt acccaatatt cataccattt catggcttaa
     2641 ttttattttg tgcctagcta aaactttaag cacaaatgaa gataagattg attttgcttt
     2701 tgcaaacaat actctttata tatatcaaga aaacaaaatt cttaatttac ccaaagatga
     2761 gctcaaaaaa attgcaaaac cagctaccat agcattagca atcaatcaaa aaatttaaga
     2821 ttttttacct ttttgacgct gctctataag attttgaatt ctttttttat tctcttcaaa
     2881 aaaagaatca aaatttttct ctgttttttc tgtatgtttt attatttgtt cctctggaat
     2941 ttcaacactt tctaaaagca cattggaatt acctattatc attgtataac gtttattagc
     3001 gtgatcaaaa acaacaagtt gattattttt atctaaaaat ctttggaaaa tcatagtaaa
     3061 atctctagaa acattgttat ttttataaac catagtcttt ttaaaccacc aaagcactat
     3121 taacaaaata actaaaatca gcattactaa gatataattt gtataatcat acccttctaa
     3181 acttgtactt tttggtttag gcattaattc ttgagaatta ttcgcagtag ttgtaggtac
     3241 agattcgata tttgcttttc cttgctctat agctcgtatt cttactccaa atttatcatt
     3301 gatagaacta agttctaaat taatattttg tttgttttgt agcataatat aggtattatt
     3361 atttttagaa ctaatactaa ttttatctac aagttgagag ttaagttctt ttaattcatc
     3421 tttagaatac gttaaatcac taaaagttaa aagagttaaa tttttttctt ttttttgaga
     3481 aatcttgcca ttataggcat tatcaaaaga aagcattaaa tctactcgat catttctatc
     3541 gtagatatta taactaatca actcaacact atataaaggt aaaattaaaa aaaataatac
     3601 tagcaatctc atttaaattt cttttttaaa gtattgaagc acagtcttag aatccaaaat
     3661 ttcattaatt cttatagcga gatttttttc ataaaccata acctcgcctt taccaaaaat
     3721 tcttttattg atataaagct caacgctttc tccagcaggc ttttcaagat caataaccga
     3781 gcctacttca agttttaaaa gctccgctac actcatattt gtagttccaa gctcgcttac
     3841 aaaatctact gtaatatcta agatatcttc ataagattgt aaaagcccat gatgaatgtt
     3901 aaactctata tcatcgctca ttatttgcaa tatcctattc taaaataaca atttctaaaa
     3961 taacaatttt caaatttata agttaaagct tcatctagaa ctatttcaga aaaatcaact
     4021 tttcctaaat attccggaat tccgagttta tactcgtcat cacccttggc atcatttaac
     4081 aaatttttag cataacctat aatctgattg gcacattctt tagttaaatc gcaccagtca
     4141 tcttctttaa atttttcatc attaattaaa atttctgcaa ttttttttaa aaattctttt
     4201 ggaaaaaata aataaaaatt acattctcct tcgcttttgc ccatgatagg aatactcgct
     4261 ccataaagtt caccgcttat atcttgagct gcttcaatgc gaagttttaa gatatgctcg
     4321 caaaaatgag tgatggaata ctcaagaatc tttaacataa ctaccacctt tataaaaaac
     4381 ttaatttaaa attatagtaa atataaaata aaaatatgtt ttaaaatttt attttttgaa
     4441 aatttcttca atatctttca ttattatatc caaatttcct tgtttaaaac actttactat
     4501 actagttcct acaatcactc cgtcagcaac ttttctcatt ctttttacat cttgattatt
     4561 ttgaatacca aaacctacaa aaataggcaa atttgtaaaa gatctgattt cttttacttt
     4621 atcttgcaag attgcttctt cgacactttt cgtacctgta atacctatac ttgctaataa
     4681 ataaataaaa cctttagcat gttttactaa ctttttaacc ctttctttag gggttgtaac
     4741 gcttacaagt gtgattaaag ctatattata tctttcacac tctttaatta aatcatcact
     4801 ttcttcaaaa cttaattcag gtacaatcaa agcacaaatc cctaaagatt ttgctttttt
     4861 cacaaatttt tccaagccat aagaaaaaat taaattataa taaaccataa aaaccaaagc
     4921 ttttttagtt tttatcctag ctaaaagctc aaaaacacta tgaatatcca cgctttgatc
     4981 aagagctatt tttgccgcat ctgcaataat ctcaccatcg gcaataggat cactataagc
     5041 aacaccaagt tctaaaatat caatagggct ttgatccaat ctttgcaaaa aagcttcact
     5101 tgtttgaaga tttggataac ctaaaaccgt ataagccaca tttgcatttt ctttataaaa
     5161 ttttctaaaa tcaaccataa atcacccctt ttttataatc tctaatcatt tgcatatctt
     5221 tatctcccct gcctgaaaga tttactacta tcacgctttt cttttttaaa gttggacaaa
     5281 gtttttctaa aaatgccaaa gcatgcgaac tttcaatcgc tgcaataata ccttcttctt
     5341 tacaaagtaa ttttaaagcc tgcatacatt cttcatcact tatagcatga tattgcgctc
     5401 ttttgctttc aaataaaaaa gcatgcaaag gaccaattcc tggataatca agccctgcag
     5461 aaacactatg tacaggcaag atattgccta aatcatcttg taaaaccttg gttttcatac
     5521 cgtgaataat gcctgttttt cccttattta aagtcgctgc atgataaggc gtatcaatgc
     5581 caagcccccc tgcttcaata cctataagtt taacattttc atctttgata aaatcataaa
     5641 aaatcccagc tgcattgctt ccacccccaa cagctgcgat aatataatct acttttttat
     5701 tgagtttttg aagttgcatt ttgcattctt ttcctataat actttgaaaa tgcattacca
     5761 ttttaggata aggataagga cctaccgcac ttccaaccac ataaaaaata tttttaatat
     5821 ctccaaccca agcttgaata gccgcagtag tagcttcttt tagagtttta agcccacttt
     5881 gtactgcatg aattttagca cccaaaagct ccattttata aacatttaaa gcctgtcttt
     5941 gcacatcggt tgcccccata taaatttcac attcaagtcc taaaagtgct gctgcagtgg
     6001 ctgttgcaag cccgtgttga cctgctcctg tttctgctat gatttttttc tttcccattt
     6061 tttttgctaa aagggcttga gcgatggcat tattgatttt atgtgctccg gtatgattta
     6121 aatcctcgcg ttttaaataa atttcatgct gatatttttt gcttaaattt ctagcaaaat
     6181 aaagtggagt aggacgccct acataagttt ttaaaagctc gtttaattct tttttaaaga
     6241 gtttatcttt agaaaatttc aaaaaagcac cttctagctc atttaaagca aacattgcac
     6301 tttcaggcaa aaactgccca ccaaaatccc cataatacgc ttttttcatt ttttcaactc
     6361 ctttaaaatt tgttttattt tgttgatatc ttttaagcct ttttcatctt caagttttga
     6421 attaagatct aaaattttag ctcccgtttg tacagcctta tgaacattat ccaaacctat
     6481 gcctccggct aatataaaat ctttagtata agaacctaat aaagtccaat caaaacttat
     6541 tccattaccg ccctttaaaa ttcccttagc atcaaaaagt actaaattag caaaaatttc
     6601 actttttaaa tctaaactat tttccacact aatcacctgc caaacaaaaa cattttgcac
     6661 ctttaaaatt tcaaattctt ctttggtaat agtgcgataa atttgtatcc catcaagctt
     6721 agcttcttta atacatctta aaatttgttc caaattttca tctacaaaaa caccgacaac
     6781 ttttttatct ttttcatgaa aaattgcact taaatttctt gcttgttcta aactcactct
     6841 tcttggactt ttagcaaaaa taagtccaaa aaaatcaata tttaaaaaag ctaaatcttt
     6901 ggcatttttt tcatctttaa taccacaaat tttaagcttt agcataagct tgatactcct
     6961 taaaatattc tataacctta cctgaataaa tggcttctaa aatcatatct ttagccacta
     7021 aaggcgaact tgctttattg gctgtataaa gtgcaaacat agcatttaaa actaccaaat
     7081 caaattttgc cccttgcatt ctaccgctta aaatatcttt taaatcttta gcgttgtcat
     7141 atgcactaga tcctatgatt tcactatgaa aagctctttt aaaaccaaat tgttcaggac
     7201 agatagaata ctctaaaatt tctccttcac aaagctcata aattttactt tcatcgcaaa
     7261 tactaagctc atccatacca tcatttcctc ttaccactaa agcttttttg cgtcctaaat
     7321 tttttaaaac ctctatcaaa agcctatgca caggtgcgtg ataatttccc ataagttgat
     7381 attttaactt taaattaggg tgcaataaag gacctaaaac attaaaaacc gttcttactc
     7441 caagtcttga tctgatctct ttaagttctc ctactaaagg atgaaaaaat ggagcatgta
     7501 aaaaactaag cccttgatta tttagttgtt ttaaaactga ttctaaagtg tttggagtag
     7561 ttatatttaa agcttctaac acatctgtac ttccgctaga acttgaaatg gcacgatttc
     7621 cgtgtttggc tacttttact cctaaagctg ctaaaataaa agcactagtc gtagaaacat
     7681 tgatactttt aaaaccatct ccacctgttc cacaaatatc aatcatctca ctctcatcac
     7741 taaaagtttg agaatatctt aaaatttgtc ttacaaaagc acttaaagat ttttcgttta
     7801 aagacttttc agtgattaaa atcaacaaag ccgctacttg taaaatttca taatctttag
     7861 acataataat cttacaaatt tgctcaaaat catcgctttg taaaaaatga ttttcactca
     7921 ttttttgcaa ataaaaactt aaaggatttt cttgtttttg tggttttttt atatcttgtt
     7981 ttaaaaaatt agaaaaaagt tgtaagccat attcactaaa atagctttca ggatgaaatt
     8041 gcacaccata ataaggtaaa tttttatgtc ccaaagccat aatcacaccc ttttcatcaa
     8101 gggctaaaat ttcaagctca tcactaagct gtttaacctc taaagaatga taacgcatta
     8161 cactaaaatt tgaaggcaaa ttagaaaata attcattttc cctgcactgt tttatcaaag
     8221 aattttttgc atgcataggc tcttgcatct taaccactaa agaatcaaaa gctaaagcta
     8281 aagcttgatg tcctaagcaa atgcccaaaa cagggatatt aagccttgct ttaaaaattt
     8341 caagacaaat cccactttga cttggatgct ttggaccagg acttaaaata atatgagtag
     8401 gatttaaatt tttaatttca ctcagagaaa ttgcatcatt tcttcttact aaaatttcat
     8461 cattgctgag ttgctctaac atgcttttaa cattaaaaac aaaagaatca taattatcaa
     8521 ttaaaagtat cattgatttt ccttttttaa attttcaaaa gctaccaaaa gcgccttgcg
     8581 tttagcacaa atttctgcat attctttttg actctcactt tgcaaaacaa tacccgcccc
     8641 acttgccaaa taagccttat cttgagtaaa aaaagcgcaa cggattaaaa tcgctaaagt
     8701 tatgtcttcg ttaaaattta aaaatcctac cgcaccacca taaattccac gatcgcaatc
     8761 ttcaagctcg ctagtgatct ctaaagctct tattttagga gctccgctta aagttcccgc
     8821 tggaaaaact gcttcaatca catcaaaaat actcgcatct tctttcatat tggcatacac
     8881 ttcactcact atgtgcatta caaatttatt tttaataata gaaaaaagat tttccactct
     8941 tgtttgagtg ccaaatttag aagcatcatt tcttgctaaa tctacaagca tcttatgttc
     9001 actaagttct ttttcatcac ttaaaagatc tttttctaaa gctaaaagat cacagttatt
     9061 ttccaaattt ctagttccag caataggggc taaataaatc tctctttttt taattttcaa
     9121 taaaaactct ggagaagaac ccaaaacaac accatgttta cttggaaaat aaaacatata
     9181 agcgcttgga tttaaagcac ttaaactctc ataataatca aaagcattta cttgatgttt
     9241 gatacaaagt tgcttactta agaccacttg aaaaatatct ccacttaaaa gatattcttt
     9301 ggctttttcg cacattttta aaaaatcatt tttttcatct tctaaagaat ttaaaatttc
     9361 aaaatcattt ttttgtttct ttttcattgg ttcaatatca tcttttaaat attcaaaata
     9421 ttttgaagca ccaaatttaa aaaacatctt gctatttttc tcataaatca aataagcttt
     9481 agcattggca aataaaaata aaggaaaatc ataatttttc ttagaagaaa gtggaatttt
     9541 ttcaaacaaa gatacaaaat ttgcactaaa aactccaaaa aatccagcaa agtcgcaaat
     9601 tttattcttg cttaaagctt cataatattt tgccttaaac tcgctaaagg ataattcatt
     9661 agcatctaaa taatcacaat caatccctat aattacctta gtcaaatcct ctgcaaaata
     9721 agaattttca aatttttcaa ggatttgtct gtaataaaaa tttacatttt taacaaacat
     9781 aataaac
//
LOCUS       DARGBD010000062         9786 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.062, whole genome shotgun sequence.
ACCESSION   DARGBD010000062 DARGBD010000000
VERSION     DARGBD010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9786
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.062"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1428
                     /gene="glnA"
                     /locus_tag="SFZ04_001244"
     CDS             <1..1428
                     /gene="glnA"
                     /locus_tag="SFZ04_001244"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEG8065515.1"
                     /translation="GKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAIN
                     EETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYKG
                     QMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTEE
                     GEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHHE
                     VAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHVH
                     MSLWKDGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFEA
                     PCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNKT
                     IPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQH
                     LKFETQVWPVEARPTAYEFKTCYSC"
     gene            complement(1495..2286)
                     /gene="flgG"
                     /locus_tag="SFZ04_001245"
     CDS             complement(1495..2286)
                     /gene="flgG"
                     /locus_tag="SFZ04_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEG8065516.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(2315..3127)
                     /locus_tag="SFZ04_001246"
     CDS             complement(2315..3127)
                     /locus_tag="SFZ04_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HEG8065517.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNS
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            complement(3283..4395)
                     /gene="ftsZ"
                     /locus_tag="SFZ04_001247"
     CDS             complement(3283..4395)
                     /gene="ftsZ"
                     /locus_tag="SFZ04_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEG8065518.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            complement(4411..5799)
                     /gene="ftsA"
                     /locus_tag="SFZ04_001248"
     CDS             complement(4411..5799)
                     /gene="ftsA"
                     /locus_tag="SFZ04_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEG8065519.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            complement(5796..7286)
                     /locus_tag="SFZ04_001249"
     CDS             complement(5796..7286)
                     /locus_tag="SFZ04_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG8065520.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLD
                     MNSDKFEQYKTMLEQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            7445..8383
                     /gene="rsmH"
                     /locus_tag="SFZ04_001250"
     CDS             7445..8383
                     /gene="rsmH"
                     /locus_tag="SFZ04_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEG8065521.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALEFSKKRLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAH
                     FIAEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            8383..9321
                     /locus_tag="SFZ04_001251"
     CDS             8383..9321
                     /locus_tag="SFZ04_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065522.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLKELDEEYESKHTKKSNIYLKEDLINVKLEEKQSLAKKIFSKMKER
                     RKEENKKTKKNFLFSRKKANEIKNIQTKTQIQTKSNQATTQTKQEKKGLTNSIEKIQK
                     TETKIQKPLIIEKKLDVKNQPNIKKSLENLQKKITPQENKQELPKPSNQAQEKQQNDE
                     DAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLCAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(9309..>9786)
                     /locus_tag="SFZ04_001252"
     CDS             complement(9309..>9786)
                     /locus_tag="SFZ04_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065523.1"
                     /translation="EFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLNFNFKI
                     LNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFKVYTRK
                     IISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKIIHSK"
BASE COUNT         3411 a         1685 c         1328 g         3362 t
ORIGIN      
        1 ggaaaatttg ttaataatat agatgatttt ttcaaatttt gcaaacaaaa tgaagtgctt
       61 tttgttgatt ttcgttttac agatatgata ggaacttggc atcatattac ctataatctt
      121 catgcaatca atgaagaaac atttcaaact ggcattccat ttgatggaag ctcaattcat
      181 ggatggcaac ctatagaaaa atcagatatg attttaaaac ctgatgctca aagtgctttt
      241 ttagatcctt ttacggctga tcctactatc atagtatttt gtgatgtgta tgatatttac
      301 aaaggacaaa tgtatgaaaa atgtccaaga agcatagcaa aaaaagcaat ggaacacctt
      361 aaaaatagtg gcatagctga tactgcttac tttggaccag aaaatgaatt ctttgttttt
      421 gatagtgtaa aaatagttga tactactcat tgttctaagt atgaagttga taccgaagaa
      481 ggagagtgga atgatgatag agaatttacc gatagctaca atactggaca caggccaaga
      541 aacaaaggtg gatattttcc agttcagcca attgattctt tagtagatat tcgttctgaa
      601 atggttcaaa cccttgaaaa agtaggtctt aaaacttttg ttcatcatca tgaagttgca
      661 caaggacaag ctgaaatagg agtaaatttt ggcacgcttg tagaagcagc tgacaatgtt
      721 caaatttata aatatgttgt aaaaatggta gctcatttaa atggtaaaac tgccactttt
      781 atgccaaaac ctttatacgg agataatggc aatggtatgc atgttcatat gagcttatgg
      841 aaagatgggg taaatttatt ttacgataaa gatggataca gtggacttag tcaaactgct
      901 ataaattata taggtggaat tttaaaaaat gctagaagtg tcgcagcttt tacaaatcca
      961 agttccaact cttataaaag aatagttcct ggctttgaag ctccttgtat tttaacttat
     1021 tcttgtcaaa acagatcagc aagttgtcgc gttccttatg gcataggtaa aaattcagct
     1081 cgtatagaaa ttcgcttccc tgatagcact gctaatcctt atttagcttt tgttagtctt
     1141 ttaatggcag gtcttgatgg aatcaaaaat aaaaccattc ctgtgggtcc tatggatgaa
     1201 aatttatttg atcttacttt ggatgaaata cgtgaaaaag ggatagagca attaccacat
     1261 actctaagag gaagtttgga agctttaatc cgacataatt cttatttaaa acctgtaatg
     1321 agcgatattt ttatcgatga ctatcagcat ttaaaatttg aaacacaagt ttggccagta
     1381 gaagctcgtc caactgctta tgaatttaaa acttgctact cttgctaaaa aatttaatgg
     1441 cgtttaacac gccattaaac aaaaaagaat taaaaattat ttattttata tcaactatcg
     1501 cttaagctga tttacaattc ctagcatatc atcacttgtt gtaatggcct tagaacccgc
     1561 ttcataagct ctttgtcctg tgataagatc tgtcatttct tcaacaagct gaacattact
     1621 aagttctata aatccatgtc ttattgttcc aagcccatct tgtcctgcta tacccgcaac
     1681 aggtgcacca cttgctcctg tttcaagata aagattatca cccatagaat gaagacccgc
     1741 tggatttata aactgaacta gctccacttg gccaatttga gtttcttgtt gctcccctgg
     1801 tagcattaca gaaacggttc catctgtagc aacattaatt gctgttgcgc cttcaggtat
     1861 tgtcatttca ggtaaaagtc tataaccatc tgaatttaca atattacctt cattatcttt
     1921 tgtaaattgc ccatttctag tatatcctat agtgccatca ggaagttgta tttgaaaaaa
     1981 cccattacct gcaatagcca tatcaagacc atcagtactt gttgatttta aatttccttc
     2041 agtaaaaact ttagttaccg ctgttggacg cacacccaca cccacttcta tacccgaagg
     2101 agaaagagta gtagctgaag ttgaagttcc tgcatacttc ataacttgat acataagatc
     2161 agcaaattct gcgcgacttt tcttaaaacc tgctgtatta acattggcga tgttatttga
     2221 agtaacatca atttgtgttt gctgcgctac cattcctgta gcagcagtat gaagtgatct
     2281 catcattttt aatccttttt tattttattt taaattattt aacagctgca agcttattga
     2341 tagcttcttg atttaagtca tccatatgag ctgtcataac tttttgatac atttctacca
     2401 ttctgtttgc ttcaatcagt cctaccattt cagtaactgg attaacattt gatccctgag
     2461 aaaaaccttg gcgaatagca ttggagtttt tcaaatctct aatacgggtt agatcatcta
     2521 ttttatagac attatcccca tctttttgca aagctcttat atcatctact tgtgctacaa
     2581 ataatcttgc attttgagct ccatcaactt caatgcttcc gtttttatca acgctaattt
     2641 gaacagcact attaggaatg cgtatgccag cattctgagg attattaaaa taatcactac
     2701 ttaatacctt gtatccttgc ttatttacca aataaccctc atcatcaagt tgaaaatttc
     2761 catctttggt taatcttact tctccatctt tggtctgaac caaataaaaa gcatcttctc
     2821 tagtcattgc caaatccaaa ggattgtttg tggcctttaa agaacctagg ctaaaatccg
     2881 tatattcttg agaaacttgt gggattccat ctattgtagt atttacaaaa cgagatgcat
     2941 ctcttgtgtg attttctata ggcaactcat cctgagtttc tttaaaaatc cttttaaaat
     3001 ctgcaataac cacatcatct cttttatatc cacttgtatt gatattggca agattattag
     3061 taatcacatc aagtttatta aactgagtta ccattccgcc agttgcttga taatatccat
     3121 tttgcatatt ttcacctata aatttaagat tttataacta taaaagcaaa gagtgttcca
     3181 acttttaaaa acaaagaaaa ataaatattt gaaagattat taggagagaa ttttaaacta
     3241 taaaaagcaa gatttgactc aatcttgctt taaaaatcaa ttttaatcca tttgacgacg
     3301 caagaaagtt ggtgtttcaa tttgcgccat tatctcttca tcgtaaccac cgcttacctt
     3361 tttaagactt aaataaggat ttttcttaga agcttgagct tcttcggtag attttttagc
     3421 tactgtatct ttatcttcaa accctgtcgc aataatagtt acttcaactc tatcttccat
     3481 gctatcatct gtggtagaac caaaaataat cttagcattt tcatcaacaa tttcttgtat
     3541 actatttgct gctgccgaaa tttcaaacaa agagcaatta gaacttgttt taaaatgtaa
     3601 aataactccc ttggcacctt taatatccat tccatcaagc aaaggagatt ctatagcgtt
     3661 tgaaagagcc tcttctatag cattttcacc gctagcacta ccaacaccca taagcgcgag
     3721 tccgcgatga ctcatgatgg ttcttacatc cgcaaagtca acattaatat ctccattatc
     3781 aagtaagata gacaccatac cttttacagc acgagctaaa atatcatcaa ccaatctaaa
     3841 agcatcttta atgcctgctt ttttatcaat aatgctcaat aatttttcat tttgaattac
     3901 aagaatagaa tcactttctt ttttaagctc aaggagaccg ctttcagcaa gtttttttct
     3961 ttgttttcct tcgaatgcaa aaggcatagt tacaacagaa acagttaaag ctccaatctc
     4021 tttagctgct tgtgcaataa ctggagtggc acccgttcca gtacctccac caaaacctga
     4081 agcaataaat acaatatcac tttgactaag acttgctttt atttcttcaa aactttctct
     4141 agcactttct gcacctactt caggaagcat accagcgccc aaacctttag tttttttctc
     4201 gccaagttga attttagttt ttgctaatga aattgaaata gcttgtgcat cagtattcgc
     4261 tgcaattaaa tcaagatcat ttaatcccat tttaaccata tggttaatca tattaccgcc
     4321 accgccaccg cagcctataa ccttaatttt tgcaccttta ttatgttgca tttcttctac
     4381 taaaaattca ctcataaaaa tttctccttg ttaaaattga ttcataattt tatgccagat
     4441 atttgaaaaa acactaggtt ttttttcttt tggctcttta aaatctaatt gttcttgtat
     4501 tgcaattgta tcattttctt gcaaattttc atcaaaaaaa tcagatttta tttcactttc
     4561 tgtatctttt tgcaaaacaa tatcttgttt aatttgacga ttaaaatttt caatttcccc
     4621 tttatatctt aatttctcat tagaatcaag ttcataaggc gtaaaatatc ccgctccata
     4681 taaacaaagt cctatagcac aagtattttc aggatcatta aaaatttcac taaaaccagt
     4741 aatcaaatct tttcttgcag tagccagtct aactgagcga ttatcaaatg ttgcaggagc
     4801 tagctcatca atacctgcta acttagtcat tccacctgtt aaaacaactc cgccacctat
     4861 agcattggca taacgattat cacttaagat ttttgccaaa atcatcaaag tttcttccgc
     4921 tcttgcataa attacgtttg aaataatatc caaagaaact tcattaactt ttctttcatc
     4981 acccattgaa ggaatttgta taagggtatt aggctgttgt gaaagagctg cataattaag
     5041 cttgattttt tctgcttctt ttaaaggtgt atgcaatgcc attgataaat cttgggtgat
     5101 attaatcgag ccaatttgca aacaatcatt atatctaatt gaatttccag tatgaacaac
     5161 catatcacaa atcgctccac ccatatcaat caaaacagca cctaattcct tttcgctatc
     5221 atctaaacaa gctatagctg aagcatatcc tgaaagaact atattatcca ctcttaaatc
     5281 agctaattca actgctttct taagattttt aatatgagat tcttgtgaaa tcactatatg
     5341 ggttgaaact tctaaacgat taccactcat tcccaaagga tcatcaacat gttcaagatc
     5401 attaacctta aaattataag gcaaaacatg gataatttca taaccacttg gtagattggc
     5461 agtatgctta gctgtactta cagcacgatg aatttcttta atgcctattt catgatttgg
     5521 aatattaaca acacctatgc tatcaacgct tttagtataa gcacctgata tagacaccac
     5581 aaccctatca taatgaactc cgctcatcat ctcagcactt ctaacagcct cttcaataga
     5641 tttagaagca agctctatat tggtaatggc acctttttta accccgttgg ttttcgactt
     5701 ggaaaaacca ataattttta atccatcttc atctttttga gcaataatgg cacaagtctg
     5761 ggttgagcct aagtcaattc ctaatatatt caaaatcaat tccctttata ataaattttt
     5821 atcggatata tctttttaag ttcatcaaca agttcttgct taagctcatt tgcttttaaa
     5881 ttttgcaaat tttgttcaag catagttttg tattgttcaa atttatcgga attcatatct
     5941 aatttttgtt tatttatttt atataatatt gctttattgt cattaatgac cacataagaa
     6001 ctattttgat cagtattaaa tacattcatt aaaaaataag caaattcaga atcgtttaat
     6061 attttatcgc taacctttac actctcgcga gaactatctc gacttacaaa gcctatatca
     6121 tcgcctttaa aatttactaa actattttta gctttttctt ctaaattttt tctagtttgt
     6181 tcgcttaaat acataggtaa aacttcttct ctagcttctt caaaagtttt atttcttata
     6241 ggatctactt tatttagttt aactatgata tatccgttat tataaggtgc tggccgtaaa
     6301 acatctccat ttttagcttt attcaaaaga tcaattggat aataaacatc agattcacta
     6361 atattttgat ctttttgaaa attatctttc ccatttttta aatctaaaaa tttagcatta
     6421 gccacattct ttagttgcat taaggcgtaa tctttagcaa cttcattttt agcagactga
     6481 aaatccatca ctttacctgc aaaatcttta tattttagtt tattttcatc ttgattataa
     6541 aatttttcta attctttgtc gtcaattttc tcattgctaa ctggcaaaaa ataagttgaa
     6601 atttcatata tttttttagt tttataatct tctttatgtt cattccaaag cttttttaaa
     6661 tcctcttcgt taatcttaat attttttttg tcataatcaa tttttgcaat acttaaagca
     6721 tcttgcataa aataactaga agctaacatt tttaattcct catctttgct aggaatatta
     6781 aaaatttgat taagtttatc ggtaattact tcatttgcaa gttgtgtttc ataatctttt
     6841 ggagttaaat tattggcatt taaaagttca taataaattg ttttgttaaa atctcctgta
     6901 ggatcttgaa attctctagt atttgcaagt ttttgtaaaa tttcattctc gtttacgcca
     6961 atacccaaat ctttggcaaa atttaacaaa agcttatctt caacaagaga gcttaaagct
     7021 atatttttaa tgcctagttg ctcagcattt tctggagtta aagcaccatt gctaatttga
     7081 ttataataac ttaaaatttg tctatatcta gtatcaaatt cactaaaacc tatcttttca
     7141 tttcctacag ttgcaacact cgaacttcta ttgagattaa aatcataagc accccaacct
     7201 aaaaagccag cgccaacaaa agctatagta ctaacccata tagtaacaac aagatatttt
     7261 ttgtgatgtt gcatccaagt aagcatatca ttccttgatt aaatttaaac tagatattgt
     7321 atcgtagaag tgtttaagtg gagtttaatt ataaaatttt taccaaaaaa tatttgttct
     7381 ttaaatttta tgatttttac aatgaaattt agttataatt atagtttata aaaatttatt
     7441 aggattgatt ttggaaattc ctcatatccc agttttgctt aatgaagttc aagagatttt
     7501 taaaaatctt aaaacaggtt attttttaga ctgcacttta ggatttggcg gacatagtga
     7561 agctttgctt aaaaatcatc ctgatcttaa attcattgct tgtgatcaag atcaacaagc
     7621 tttagaattt tctaaaaaac gccttaaaga ttttcgcaat aggataactt ttatgcaaag
     7681 taattttagt gaagttttag aaaaaatttc acataaagaa gaattaagag gtattttagc
     7741 agacattgga gtttcttcat ttcagcttga taataacgaa agaggtttta gtgtaaattc
     7801 tgactttttg gatatgagaa tgaatcaaaa ctccaaaata tcggcttatg agattattaa
     7861 tacttataca aaagagcaat taacttccat ttttaaagat tatggagaat tacatgatgc
     7921 acattttatt gctgaaaaaa tttgcctaga aagaagtaaa aatccaatca aaagtgccaa
     7981 agagctttat caaatcatag gaaaaggtaa acaaaatcat agaaaaattt ccaaagctac
     8041 tttagcattt caagccatta gaatagaagt aaatcaagaa cttaaagtgc ttaaagattt
     8101 tcttgaacat ttagaaaatt taaaaccaaa aaattgcatt ttagctatca ttagctttca
     8161 ttctttagaa gatagaatag taaaacaatt tttcaaaaaa tggtcaaaaa actgcatttg
     8221 taatgaaaaa ataatgcgtt gcgaatgtgg aaataaccat agcctaggac aaataataac
     8281 taaaaaagct ataagtgcga gcaaggaaga acttttaaaa aattctcgct ctagttgtgc
     8341 taaaatgcgg gctttttatt ttaataattt ggacaataaa taatgctaga agatgatttt
     8401 ataaaagaac gccaaaacat acgccaaaaa atgctgaaat tttctcgcgc cataaatcaa
     8461 ggcaaaccgc ttgatgatga tttaagagat gaaatttcta gcgatgatat tttaagacgt
     8521 cgttttaaaa aaaagactcc taataaattc ttaaaagaac tcgatgaaga gtatgagtca
     8581 aaacatacta aaaaatcaaa tatatattta aaagaagatc taatcaatgt taaattagaa
     8641 gaaaagcaat ctcttgctaa aaaaattttt tccaaaatga aagaaagaag aaaagaagaa
     8701 aataaaaaaa ctaaaaaaaa ttttttattt agcagaaaaa aagcaaacga aataaaaaat
     8761 atccaaacca aaacacaaat tcaaacaaaa agcaatcaag ctaccactca aacaaaacaa
     8821 gaaaaaaagg gacttacaaa ttctatagaa aaaattcaaa aaacagaaac taaaatacaa
     8881 aaacctctaa ttatagaaaa aaaactagat gttaaaaatc aacctaatat caagaaaagt
     8941 ttagaaaatt tacaaaaaaa aataacacca caagaaaata aacaagaact tccaaaacca
     9001 tctaatcaag ctcaagaaaa acaacaaaat gatgaagatg ctcaaaaggc aaaaaatatt
     9061 ttactagaag gcttctctaa tgctaccaaa gaagatagaa acctaaactt caatcatctt
     9121 ctttttgcag ctttacttgt tagttttgca ttatttttat gtgccccaca aatttatatt
     9181 agaaatcaaa tttattatct tagtagagag attgctacat taagaacaga agaaagtgtt
     9241 ttaaacgagg aaaataaaga cttaaaaaga agacttgaaa atatgcgatt ccaaaatcaa
     9301 attttagatt atttagaatg aataatctta tctaaaacat actgctctaa atttgctttt
     9361 ggaatttctt cttttaaagc ttctttataa aattcacccg ccattgtaga gtacttttca
     9421 taagcaaaat aaggaaagtg taaagcccag gctttttgta ttattttttt tgagattatt
     9481 ttgcgagtat aaactttaaa aatatcatat cctataaata cacaagcagt aaccataaca
     9541 gcgctcacta tgcttatatg aaagtcaagc tttgttaaaa aataatgagt aatcaaaagc
     9601 aatggcaata aaatcacagc gcaaaaaaca ccaaaataaa tataagaatt tagaattttg
     9661 aaattaaaat ttagcttaga aggatctaca agcattccat cgttaaaaag tgcatttgcc
     9721 tctaataaat ctcttataag aacaggttgc tctgatactt taaataaaaa acgaaggcta
     9781 aattct
//
LOCUS       DARGBD010000063         9562 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.063, whole genome shotgun sequence.
ACCESSION   DARGBD010000063 DARGBD010000000
VERSION     DARGBD010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9562
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.063"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..422)
                     /locus_tag="SFZ04_001253"
     CDS             complement(<1..422)
                     /locus_tag="SFZ04_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HEG8065524.1"
                     /translation="MQMQEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFR
                     NSIPYPQILNFLNERNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDG"
     gene            872..1993
                     /locus_tag="SFZ04_001254"
     CDS             872..1993
                     /locus_tag="SFZ04_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HEG8065525.1"
                     /translation="MIYCDHCVMPNTRPGINFTKDKEGKNICSACINHKNKENIDYKA
                     RFKELEVLCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFT
                     MTEAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGSDTEETPSAKEIFLNGVASDLNINEFIDDEIKEENL
                     QLFFNPNKDKLDKLNPIYLSYFVKWNSYSNYIFAKSRGFTDLEGEWDRTMCAENFDQV
                     DSIGYILHAWMKYPKFGHACASDYAARFVRYGLLSRKEAIELVQKRDHKLDNKCVEDF
                     CNFIGISKTTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
     gene            2011..2686
                     /locus_tag="SFZ04_001255"
                     /pseudo
     CDS             2011..2686
                     /locus_tag="SFZ04_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            2726..3730
                     /gene="legI"
                     /locus_tag="SFZ04_001256"
     CDS             2726..3730
                     /gene="legI"
                     /locus_tag="SFZ04_001256"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HEG8065526.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDLKAHKELILHAKKCNITFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNVLCK
                     NGAKRQNITLLHCTTEYPAPFNEVNLKAMQSLKDAFKLDVGYSDHTRGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPQELKMLCTQIRQIQKAMGDGIKKASKSEQKNI
                     NIVRKSLVAKKDIKKGEIFSEGNLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            3723..4877
                     /gene="legG"
                     /locus_tag="SFZ04_001257"
     CDS             3723..4877
                     /gene="legG"
                     /locus_tag="SFZ04_001257"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEG8065527.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLKPDMVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIIDSEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNGKNPNKIIKTCLKNVNLDTILHKNFIDL"
     gene            4886..5911
                     /locus_tag="SFZ04_001258"
     CDS             4886..5911
                     /locus_tag="SFZ04_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG8065528.1"
                     /translation="MDINKLKLTPDSSIKEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEQLLKISAKTDIYDFPVLDEKGQI
                     LSIKSISSLLKANPNSIIIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIIQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELDFNALLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLVLQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            5908..6813
                     /gene="ptmF"
                     /locus_tag="SFZ04_001259"
     CDS             5908..6813
                     /gene="ptmF"
                     /locus_tag="SFZ04_001259"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HEG8065529.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLNHEVSLLSLSAKKEEFKNTPIY
                     CSLKECDLNEFDLFIIANITTEHFNTLKTLDELVKDKTILVEKPLFEKSQNFTSSKNH
                     IYVAYLQRFNPVIVALKRLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFKDLELIYSQNAKISELDITSDDFAFLALKNSQEAKIHIELDYF
                     AKFNKREIIIHTLEKSFKADLINNKIEIYHKNQSQKILNFENDTIKTLQNLHHAVFEK
                     DKELCDLKQALKVLELCDEVRKKNG"
     gene            6806..7513
                     /gene="legF"
                     /locus_tag="SFZ04_001260"
                     /gene_synonym="ptmB"
     CDS             6806..7513
                     /gene="legF"
                     /locus_tag="SFZ04_001260"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HEG8065530.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINKLEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYGAEVFFKREAHLANDRTAKLPVMRDALLRSEEHFKTCFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            7513..8283
                     /gene="ptmA"
                     /locus_tag="SFZ04_001261"
     CDS             7513..8283
                     /gene="ptmA"
                     /locus_tag="SFZ04_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HEG8065531.1"
                     /translation="MLENKIIFVAGACGRIGKALCQKILLSKGIPILADINKECLNKL
                     QENLETNFKTKLLSLELDITKQESLQTALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDVCGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            8271..>9562
                     /locus_tag="SFZ04_001262"
     CDS             8271..>9562
                     /locus_tag="SFZ04_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8065532.1"
                     /translation="MGLMMTFTPTQKELFNKNIEALSNILLKESLKQIQSSKFELILG
                     KDNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQ
                     NKNHQHIVVFEKDIEIIWIMFHVLDFSNELQNSRLMILQTSSLDIELFSNFCSSKPFF
                     QFSRIYFLELMSHYYERFHEDVLELNKKLVQDFKDSILSHGNDPLDALQGIEQFVYNL
                     PQMITHPSYKELLSKRKNLSDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPIL
                     AKHGIKPDYVCMLERDEIVAECFNNDFGEFDKDIVFIVKSVTHPHTIKYLQKNNRAFI
                     LVSTYASFIQYLKLDYFGYFNMGFSVAHMNFLLTIHLKYKNIILIGQDLAYAKDGQTH
                     SQGFIHANLHNGDYERDLDKFSTTAYGGNGKVQSSEIWT"
BASE COUNT         3647 a         1354 c         1526 g         3035 t
ORIGIN      
        1 cttccatctt ttataagtgg ctccatgctt tctccatagc aagtgataaa ctcacactct
       61 ttactaccaa aaaagtttaa taatttttca tccataataa gctcagagca atctattaaa
      121 tcatttattc cacctccgcc taaactcgca tttgttttat aaagctttaa aattttatat
      181 ttattctcac attctaattg atcttttggg gaacttccat agaagaaata attaatgctt
      241 atattcctct catttaaaaa gtttaagatt tgtggataag gaatggagtt tctaaatttc
      301 atagaattaa aagtatcagg atgaatgcct aattctttag ctatatcttt ggtttttaaa
      361 tcacgcttac cttcgctagc aagtatatct tttaattttt caatcacttc ttgcatttgc
      421 attttaaatc ctttgatttt aatttcaaag aatttaaaca taaaatttca aaaagcaatt
      481 aaaaactttt gatttgaaag attaaaatat agatgtgaat ttcgtgttag aaatcaaagt
      541 gaaaaaataa gactttgatt ttaagtgtca aatgactttg atttgtaaag cggttttata
      601 aatgtcaaac agtttatgat ttgctttatg aaaaaagaaa tttgttaaat attatcgaca
      661 ctataggcat agaactttgt aataaaattt gtaagaattt aaaagaagat gatgaaaatt
      721 tttaccatcc aaaaatcttt aaaaaggcct tataaaaagg aattttaggt agaaaaataa
      781 aacaaacata agtgatattt tataaaataa gcaaatatta atttaatatt ttatacaatc
      841 taatattttt attaaattga aggggtgggg aatgatttat tgtgatcact gcgtgatgcc
      901 aaatactaga cctggtatta attttacaaa agataaagaa ggtaaaaata tctgttcagc
      961 ttgcatcaat cataaaaata aagaaaatat tgattataaa gcaaggttta aagagcttga
     1021 agtcttatgt gataaatacc gcagaatgaa tggaaaattt gaatatgatt gtgctattgc
     1081 cgtaagtgga ggtaaagatt cgcattttca agtgcatatc atgaaagaaa aacttggaat
     1141 gaatcctatt ctttttagcg ttgaagataa tttcaccatg actgaagcag gcaagaaaaa
     1201 tcttaaaaat ttaagtgaaa cttttggttg tcatatcatt agcttaaagc ctgatatcaa
     1261 aactcaaaaa aaagttatgc taaaaacctt tgaaaaatat ggaaaaccta cttggtttat
     1321 tgatagactg atttacagct atccttttgc tatggcttta aaatttaata cacctttatt
     1381 ggtttatgga gaaaatgtta gttatgaata tggaggtagt gataccgaag aaactcctag
     1441 cgctaaagaa atatttttaa atggtgtagc tagtgattta aatataaatg aatttataga
     1501 tgatgaaatc aaagaagaaa atttgcaact ctttttcaat ccaaacaaag ataaactcga
     1561 taaacttaac cctatctatc taagttattt tgtaaaatgg aattcttata gcaattatat
     1621 ttttgctaaa agtcgtggtt ttactgatct agaaggcgaa tgggatagaa caatgtgtgc
     1681 agaaaatttt gatcaagttg atagtatagg ctatatccta cacgcttgga tgaaataccc
     1741 taaatttggt catgcttgtg cgagtgatta cgcagctcgt ttcgtgcgtt atggactttt
     1801 aagcagaaaa gaagctattg aacttgtgca aaaaagagat cataagcttg acaataaatg
     1861 cgttgaagat ttttgcaatt tcataggtat tagtaaaact acattttgga aaatagtaga
     1921 aaaacattac aatatggatt tattttataa aaatgatttt ggagaattta aattaaaaaa
     1981 caaattacaa taaaaatata aaggaaaaaa atgcaaaact cattagaagc ttatacaatg
     2041 aaatataatg aaaatggata cggattactt tttccagatg gtcatgtagt acgtttttat
     2101 gaaagaattt taaaatacaa actaaataaa ataaatggaa atttacttga ttttggttgt
     2161 ggcaatggtg tacattcagc gtattttcaa agcaaagggt ttaaaacttt tggaatagat
     2221 atagttccaa gtttaaaaga aatttgggag caaaatatta gcgggggggg ggtattgtaa
     2281 aattatagaa ccaaattcta gcatcaaagg actttttgat gaaaatatgg atattatctt
     2341 tgcaaatcaa agtctttact acatacctct aaaagaactt aaacaaaata ttttagaatt
     2401 ttacgaactt ttgaacacag gtggaatact ttttgctaca atgatgagca agaaaaatta
     2461 ttatttttcc cacagtcaaa aagaagaaaa aaatggcttg agtaaagttg aaattaatgg
     2521 aagattaaat gaaacaagct ttatacattt tattgataaa gcccaagatc tagaaaatct
     2581 ttttcaacct tttgaaactt tatttttagg agattatgat cctattaatt tttataattt
     2641 tgaaggatca gcacaccatt acatttatgt aggtattaaa aaataaaatt ttgcctttat
     2701 tttaaggcaa aataaaggca aaactatgaa aaaaactctt atcatcgcag aagcaggagt
     2761 taatcacaat ggtgatttaa atttagctaa aaagttaata gaaatcgcag cagattcagg
     2821 ggctgatttt gttaaatttc aaagttttaa agccaaaaac tgtatcagca caaaggctaa
     2881 aaaagcaccc tatcagctta aaaccacggc tagtgatgag agtcagcttc aaatggtaca
     2941 aaaactcgaa ctcgatctta aagctcataa agagcttatc ttacacgcaa aaaaatgcaa
     3001 tattaccttt ctttctactc cttttgatct tgaaagtgta gatcttttaa atgagttagg
     3061 cttaaaaatc tttaaaattc caagcggaga aatcaccaat ctaccctatc ttaaaaaaat
     3121 tgcaaagctt aataaaaaaa tcatactttc aacaggcatg gcaaatttag gcgagataga
     3181 agaagcttta aatgtgcttt gcaaaaatgg cgctaaacgc caaaatatca ctcttttaca
     3241 ctgcactaca gaataccctg ccccttttaa tgaagtcaat cttaaagcca tgcaaagctt
     3301 aaaagacgct tttaagcttg atgtgggtta ttctgatcac acaaggggta tacacatttc
     3361 cctagctgcg gttgccttgg gagcttgtgt gatagaaaag cattttactc tagacaaaaa
     3421 tatgtcaggg cctgatcata aagcaagcct agaacctcaa gaactaaaaa tgctttgtac
     3481 ccaaataaga caaatacaaa aggcaatggg tgatggcata aaaaaagcaa gcaaaagcga
     3541 acaaaaaaat atcaacatag taagaaaaag tttagtggcc aaaaaagaca tcaaaaaagg
     3601 agaaattttt agcgaaggaa atcttactac caaacgcccc gcaaatggta taagtgctat
     3661 gagatatgaa gagtttttgg gtaagattgc tactaaaaac tacaaagaag atgagcttat
     3721 ccgtgagtaa aagaaaaatt tgtatagtca gtgcaacaag ggctgaatgg tatcttttaa
     3781 gaaatttatg tcatgaaatt caaaacgata aagatctaag ccttcaaatc atcgctacag
     3841 gagcacattt aagccctgag tttggactca cttataaaga aatagaaaaa gaatttaaaa
     3901 taactaaaaa aatccctatc ctgcttgcaa acgatgataa aataagcctt tgtaaaagta
     3961 tgagtttagc ttttagtgct tttagcgatg cttttgaaga cttaaaacct gatatggtgg
     4021 tgattttagg cgatcgttat gaaatgctta gcgtagcaag tgtatgtcta ttgatgcaca
     4081 tacctttagt gcatttatgt ggcggggagc ttactttagg ggctattgat gatagtataa
     4141 gacacagcat ttcaaaaatg tcacatttac attttgtaag tcatgaaatt tataaaaaaa
     4201 ggcttttgca acttggagaa gaagaaaaaa gggtttttaa tataggttct ttagcttcta
     4261 ctatcataaa aaatatgaat tttttaaaca aaaaagattt agaaaaagcc ttagaaatga
     4321 aactagataa agaactttac ttaatcactt atcatccttt aactttaaat gtaaaaaata
     4381 ctcaaaaaga gattaaaacc ttacttaaaa aacttgacac ccttaaaaat gcaagtttga
     4441 tttttaccaa agcaaatgcc gatgaaaatg gacttttaat caatgaaatt ttgcaaaatt
     4501 actgccaaaa aaactcacac aaggctaaac tttttgataa tcttggctca caaaaatacc
     4561 taagtcttat gaaaatagcc aaggccatga taggcaattc ttcaagtggt attagtgaaa
     4621 gtcctttttt taaaactcct tgcattaata taggcgatag acaaaaaggg cgtttaagaa
     4681 ctcaaaatat cattgattcc gaaatcaacg atcttgatca agcttttgaa aaattagaaa
     4741 gcaaagaatt taaacaaaat ttaaaaaatt ttaaaaaccc ttatgataat ggtaaaaatc
     4801 ctaataaaat cataaaaact tgcctaaaaa atgtaaattt agatacaatt ttacataaaa
     4861 atttcatcga tttataaggc ttagtgtgga tataaacaaa ctcaaactca cccctgattc
     4921 tagcataaaa gaagctttaa aaatagtcgg gcaagaacgc gttagattag gcattatagt
     4981 tgataaaaag gataaatttt taggagtcat tagcgattca aacatcagaa aagctttaat
     5041 tagtggcaaa actttaaaag atagtatcaa agatatttac actaaaaatc ccatcaccat
     5101 aaaagaaaac acaagcaaag aacagctttt aaaaatttct gctaaaaccg atatttacga
     5161 ctttcctgtt ttagatgaaa aagggcaaat tctttctata aaatctatct catcactttt
     5221 aaaagccaat ccaaactcca ttatcatcat ggctggaggc ttaggctctc gcttaaaaga
     5281 gctgactaaa gatactccaa aacctatgtt aaaagtaggc aaaaaaccca ttttagaaag
     5341 cataatccaa agacttaaaa atcaaaattt tgaaaatttt atcttttgtg tgaattataa
     5401 aaaacaaatc atagaagatt attttcaaaa agggcaaaaa tttggggtta aaatttctta
     5461 tattaaagag cgtaaaaaac taggtacagc aggggcttta agccttataa aacaagaatt
     5521 taaagaaagt tttatcgtta tgaatgcaga cattttaacc gagctggatt ttaatgctct
     5581 tttaaaagcg cataaaaaat caaaagcttt aatgagcgtt tgcgtgcgtg agtttgagca
     5641 acaaattcct tatggagtga tcactcaaaa acaaggtttt atagaaaata tagaagaaaa
     5701 acctacccaa aaattcctag taagtgcggg gatttatgta cttgaaaatg aaattttaaa
     5761 tttaattgct aaaaatgaat acttagacat gcccgaactc atcaaacttg tattgcaaaa
     5821 aggcaaggta aatacctata tcatcaacga ttattggatt gacattggaa ggccagatga
     5881 gtttttaaaa gccaatgagg attttaaatg aaagtcttaa tcataggctt tggaagcata
     5941 ggaaaaaagc attttttagc cttaaaaaat ttaaatcatg aagtaagttt gctttcttta
     6001 agtgctaaaa aagaagaatt taaaaacact ccaatttatt gctctttgaa agaatgtgat
     6061 ttaaacgaat ttgatctttt tatcatcgca aatatcacta cggagcattt taacacctta
     6121 aaaactttag atgagcttgt aaaagataaa accatactcg tagaaaaacc tttatttgaa
     6181 aaaagccaaa atttcacaag ctcaaaaaat cacatttatg tagcatattt acaacgtttt
     6241 aatcctgtga ttgtcgcttt aaaaaggctt ttaaaaggtg aaaaaattta ttttgctagt
     6301 ttggtttgta attcttattt gccccattgg agagctttag actacaggca aaattacagc
     6361 gctaaaaaag agctaggtgg tggggtttta ctcgatctct ctcatgaaat cgatctagcc
     6421 ttttttcttt ttaaagactt agagcttata tactcccaaa atgctaaaat ttcagagctt
     6481 gacataacaa gcgatgattt tgcctttttg gctttaaaaa attcacaaga agctaaaatt
     6541 catatagaac tagactattt tgctaaattt aacaaaagag aaattatcat ccatacttta
     6601 gaaaaaagct ttaaagccga tttgataaac aataaaatcg aaatttatca caaaaatcaa
     6661 agtcaaaaaa tcttaaattt tgaaaatgat acgataaaaa cccttcaaaa tttacatcat
     6721 gcagtctttg aaaaagacaa agaactttgc gatcttaagc aggctttaaa agtgcttgaa
     6781 ctttgtgatg aagtaaggaa aaaaaatggc tgaaatttta tgtactattt gtgctagggg
     6841 tggtagcaaa ggcgttaaaa acaaaaatat tagaaagatt aacaaacttg aaatgatagc
     6901 ttatagcatc atacaagctc aaaattcaaa gctttttaaa cacatagtca taagtactga
     6961 tagtgatgaa atcgcaagtg tagcccaaaa atatggcgct gaagtttttt tcaaaagaga
     7021 agctcatctt gccaatgatc ggactgcaaa acttcctgtc atgcgtgatg ccttgctaag
     7081 aagtgaagag cattttaaaa cgtgttttga aactctcata gacttagatg cttcagcccc
     7141 gcttcgctca agccttgata taaaaaaagc ttatgaaagt tttgttgaaa atgataattc
     7201 caatctcatc accgcagttc ctgctagacg caatccttat tttaacctcg tagaaataca
     7261 aaataacaag gtagtaaaat ccaaagaagg aaattttacc actcgccaaa gtgccccaaa
     7321 atgctatgat atgaacgcta gtatttatat ctttaaaagg gattatcttt tagaaaatga
     7381 tagtgttttt ggcaaaaaca cagggctttt tgtaatggat gaaagcacag cttttgatat
     7441 tgatagcgag cttgatttta aaatcgtaga gtttttaatc tctttaaaaa atttatcgcc
     7501 aaaggatttt taatgcttga aaataaaatc atctttgtag caggagcttg tgggcgtata
     7561 ggtaaagcgc tttgtcaaaa aatacttctt agcaaaggta tccctatact cgcagatatc
     7621 aacaaagaat gcttaaataa attgcaagaa aatttagaaa caaattttaa aacaaaactt
     7681 ttaagcttag aacttgatat cactaaacaa gaaagcttac aaaccgccct tcaaaaaagt
     7741 caagaaagat acggcaaaat cgatgctttt gttaactcaa gctatccttt tggcaaagat
     7801 tggggtaaaa cgccttatta tgaactcaaa tacgaacaaa tttgtgaaag tttaaattta
     7861 catttagcag gctttatgct agccgctcaa gaatttgtga aattttttaa acaacaaggc
     7921 tatggtaata tcatcaatct tagctccatc atgggagttt atgcgccaaa atttgaaaac
     7981 tatgaaggca cttccatgca aagctcttta gaatacagtg tgataaaagc agggattaat
     8041 cacatgagct cttggctagc taaagagctt tttaatcaaa acatacgcgt taatacccta
     8101 gcaagtggag gaattttgga taatcaaaat gaactttttt taaaagctta tagaaaatgt
     8161 tgtgcaagca agggtatgtt agatgctgat gatgtgtgcg gaaccttggt atttttgctt
     8221 agtgatgaga gtagatttat cacagggcaa accttagtag tagatgatgg atggggctta
     8281 tgatgacctt cacccctact caaaaagaac tttttaataa aaacattgag gctttaagta
     8341 atattctttt aaaagaaagt ttaaaacaaa tccagtctag taaatttgaa cttatcttag
     8401 gtaaagataa tctagatatc aatctaaaag atacaagtga taatactttt ctttatgaaa
     8461 atgttattga tgaattaaac actatgttaa acacctataa tgacaaatac ctactttatc
     8521 ctgtattgta tttttatggt tttggaaatg gaattttatt taaagcttta ttgcaaaata
     8581 aaaatcatca acatattgtg gtttttgaaa aagatataga aatcatttgg ataatgtttc
     8641 atgtcttaga tttttcaaat gaattacaaa attcaagatt gatgattttg caaacaagtt
     8701 ctttggatat agaattgttt tctaattttt gctctagcaa gcctttcttt caattttcta
     8761 gaatttattt tttagaactg atgagtcatt attatgaaag atttcatgag gatgttttgg
     8821 agttaaataa aaagctagtg caagatttta aagattccat tctttctcat ggtaatgatc
     8881 ctcttgatgc tcttcaaggc atagaacaat ttgtctataa tcttcctcaa atgattactc
     8941 atcctagtta taaagaatta ctttctaaaa gaaaaaattt aagtgataca gctattattg
     9001 tttctacagg accaagttta actaaacaac ttcctttatt aaagaagtat gctaataaag
     9061 ctacgatttt ttgtgcagat tcttcttatc ctattttagc taagcatggt ataaagcctg
     9121 attatgtttg tatgttggaa cgcgatgaaa tagtagctga atgttttaat aatgattttg
     9181 gggaatttga taaggatatt gtgtttattg ttaaatctgt tacacatcct cacactatca
     9241 aatatcttca aaaaaataat agagctttta tacttgtatc cacctatgca agctttatac
     9301 aatatttaaa attagattat tttggatatt ttaatatggg atttagcgta gcacatatga
     9361 attttttatt aaccattcat ctaaaataca aaaacatcat tctcataggt caggatttag
     9421 cttatgccaa agatgggcaa acacattctc aaggtttcat ccatgctaat ttacacaatg
     9481 gagactatga aagggactta gataaattta gcactacagc ttatggagga aatggaaaag
     9541 ttcaaagttc tgaaatttgg ac
//
LOCUS       DARGBD010000064         9532 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.064, whole genome shotgun sequence.
ACCESSION   DARGBD010000064 DARGBD010000000
VERSION     DARGBD010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9532
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.064"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..207
                     /locus_tag="SFZ04_001263"
     CDS             <1..207
                     /locus_tag="SFZ04_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEG8065533.1"
                     /translation="IDTLILFRKGEVALEILPKLVEKNIKNLWLQLGISNETAKEECK
                     KLDINFIQNRCIMLEYPYFKTKEK"
     gene            207..1418
                     /locus_tag="SFZ04_001264"
     CDS             207..1418
                     /locus_tag="SFZ04_001264"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEG8065534.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSAEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYVFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(1415..2140)
                     /gene="truA"
                     /locus_tag="SFZ04_001265"
     CDS             complement(1415..2140)
                     /gene="truA"
                     /locus_tag="SFZ04_001265"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEG8065535.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(2137..3162)
                     /locus_tag="SFZ04_001266"
     CDS             complement(2137..3162)
                     /locus_tag="SFZ04_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG8065536.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(3162..3938)
                     /locus_tag="SFZ04_001267"
     CDS             complement(3162..3938)
                     /locus_tag="SFZ04_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEG8065537.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKPFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLPISLLINEILGAILLILVYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLFIASIL
                     TLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            complement(3935..4603)
                     /gene="uppS"
                     /locus_tag="SFZ04_001268"
     CDS             complement(3935..4603)
                     /gene="uppS"
                     /locus_tag="SFZ04_001268"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HEG8065538.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRAIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            complement(4607..5224)
                     /locus_tag="SFZ04_001269"
     CDS             complement(4607..5224)
                     /locus_tag="SFZ04_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065539.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFIFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGVSIFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            complement(5221..6375)
                     /gene="coaBC"
                     /locus_tag="SFZ04_001270"
     CDS             complement(5221..6375)
                     /gene="coaBC"
                     /locus_tag="SFZ04_001270"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEG8065540.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTRNSLKILKENKALIIEPICKVLACKDEGVGAL
                     AEVKDIFNITKRELLKEKFWCDKSVVVTGGGTKEKIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQSKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            complement(6372..7661)
                     /gene="glmU"
                     /locus_tag="SFZ04_001271"
     CDS             complement(6372..7661)
                     /gene="glmU"
                     /locus_tag="SFZ04_001271"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEG8065541.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLSNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQEKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAGHKMIKDYYYKKFQK"
     gene            7804..8538
                     /gene="fliP"
                     /locus_tag="SFZ04_001272"
     CDS             7804..8538
                     /gene="fliP"
                     /locus_tag="SFZ04_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEG8065542.1"
                     /translation="MKKILLFLLLSMSLFAAEVTIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            complement(8554..9324)
                     /locus_tag="SFZ04_001273"
     CDS             complement(8554..9324)
                     /locus_tag="SFZ04_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEG8065543.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGLFDSLGEKYLKDVKDTFKKNNLEFFF"
BASE COUNT         3389 a         1688 c         1212 g         3243 t
ORIGIN      
        1 atcgatacac ttatactttt tagaaaaggc gaagtggcac tagaaattct tcctaagctt
       61 gttgaaaaaa atattaaaaa cctatggctt caacttggta ttagtaatga aacagccaaa
      121 gaagaatgta aaaaattaga tataaatttt atacaaaatc gttgcattat gctagaatat
      181 ccgtatttta aaacaaagga aaaatagtgt tagagcttaa taaaatttac aaagcaaaac
      241 aacaaatttc agggtttgta aacaaaactc ctttcatata ctcttctttt ttaagtgata
      301 tttgtcaaag tgagatttat cttaaaaatg aaaatttaca aattacaggt gcttataaaa
      361 ttcgtggagc ttataataaa atagccaatc ttagcgctga acaaaaacaa cacggagtca
      421 ttgcggcaag tgcaggaaac catgctcaag gcgtggccat tagtgcaaaa aaatttggca
      481 ttaaagcagt tattgtaatg ccagaatcca ctccgctctt aaaagtttct gctacaaaag
      541 ccttaggagc agaggtgata ctcaaagggg acaattttga tgaagcttat gtctttgcaa
      601 cctcttatgc taaagaaaat aatcttagtt ttatccatcc ttttgaagat gaatttgtaa
      661 tggcaggaca aggaactttg atgcttgaaa tgcttgatga aataagcgat cttgatatga
      721 ttatcgcacc tgttggaggt ggaggactta taagtggtat cgcaagtgca gctaaacaaa
      781 tcaatccaaa cattaaaatc atcggagttg gagccaaagg agctcctgca atgtatgaaa
      841 gttttcatgc caaaaaaatc aaaaatgcaa aaagcgtacg cactatagcc gatggtattg
      901 ctgtgcgtga tgcaaatcct ataaatttta acattatttt agaatgcgta gatgatttta
      961 tccaagttga tgatgaagaa atcgctaatg cggtattgtt tttacttgaa aaacataaaa
     1021 tcatagttga aggcgcagga gctgcgagtg tagccgccct gcttcatcaa aaaataaata
     1081 cacaaaatca taaaaaaatt ggcgtagttt taagcggagg caatatcgat gcacaaatgc
     1141 taaatatcat catagaaaaa ggtttattta aatcttacag aaaaatgcaa attcatgtta
     1201 ctttagtaga taaacctggg gcattattac accttacaga cagcttaaaa atagccaatg
     1261 caaatatagt aaaaatcgac tatgatagat tttctaccaa gcttgattat ggcgatgcga
     1321 tgatttcaat taccctagaa accaaaggta aagaacacca agaagaaata agaaaaattt
     1381 taacccaaaa ggcttttaat ttctatgaaa gtttttaata acatatacgg cttaaataaa
     1441 gcccatttgg cggtgctaaa aagtgattgt attgcttttt agcctcaatc tgttctttga
     1501 gttctttttc actcattttt ccttctaaaa cttttaaaac gcttgctacg cttaatctaa
     1561 tttgccctct taaaaaacca ttagctttaa aatgaaaaat gctaaaatct ttataagcat
     1621 aagctctagc aataaaaatt tctcttaaag tcgttttatt atcccctcca cttttgcaaa
     1681 aaaactttaa atcctttttt cctacaaaaa aacccaaaag ctcattagct ttacctaggt
     1741 caaatttagg ataaaaatgt acataagaag ccataaaagg actataagaa gcgtgagaaa
     1801 atatatagcg gtattctcta ctttttacat caaatcttac ttcaaaatca tcttttactt
     1861 tttcaatttt tttgatatgg ataaaaggat gggaaaattt attaagttgt ttttgaagat
     1921 attctaaatt tgtaaaataa tctccacact ccacactagc tacagcatag cttgcatgta
     1981 ctcctttatc tgtacgagaa gccattaaaa gaggtgaaaa aatacccaaa tgcgataagg
     2041 ccccacttaa agcatcttga acaccttttt tatgaggctg agtagcagaa cctaaaaaag
     2101 cagagccatc ataagaaaat ataattttta ttttcatcaa tatcgactca aaatcatttt
     2161 cttaaaacaa taagccgaaa caaataaact taaagaaaaa attccaagac aagccaaaat
     2221 tggaggttga gaaaaagaac ttaaaagtcc aaaatatata gcaatcactc caaacatacc
     2281 taaatacaca tagccttttt cataacgata agtaaccaaa ccaaaacaaa gcgcaaaaag
     2341 cgtactagca agtggaaaca aggctatagt tgtataaatc acaaattctc ttgctctttg
     2401 tggattttcg tttaaatcat tccagtattc ataaaatttc tttgtttgaa gattgtctgt
     2461 attaaactga gtatttacta ctaaagtgtc aaattctcca ctaaaaatac tttgaccttg
     2521 ctcaaaatta tacattttgc cttgatttaa gctaaaagca aagctatcat cttttctttg
     2581 cacatgcgct tctttggcta tgataagttg ttctttatca tctgctttat gtttagggcg
     2641 atacataatt atgttttcat acttatcact atcttgtttt tctataaaaa tcatccagtc
     2701 taaaaatttt tgtccaaatt ctcctgtttt gtagttaaat ttcacttgag tgcttttata
     2761 gtttacaaag ttatcctgaa gttcaaatac tataggtatc attaccaaag ccacaacaag
     2821 cataaaagca ctaatcaagc ttgcaatttt aaggaaaaat tttgccaaaa tcattggtga
     2881 aaatcccaaa gtaaaaagca ctatgctttc attttcctta gaaagcctaa acaaagccaa
     2941 agttaaagaa ataaaaaaag atataggcaa ggtaaaaatt aaaattctag gcaacataaa
     3001 cccataaagc tttaaaagat ccaaaaaact aatctctata cttgaagtaa gttttgcaag
     3061 ttgaataaaa aacaccatag atacaatagc aaaaagtacg aaaaatatag acaaattcgt
     3121 acttaaaaat tgatttaaaa catatcttaa actaagcttc attagaataa tcctaagttt
     3181 ttataaaata aaactgccac aaaagcgata tttaaaaagg gtatcatagc aagttcttgc
     3241 tcttttattg ctttaattct aaaaaaaata aaaaaaggca aagtcaaaat agaagctata
     3301 aataatacta aaaatccata ctcaaaacct aaaattccac ctatacaaga cataataata
     3361 atatcagcat cacccaaatt ttctaaaatt tcatcttttt tttggaaatt cattagaaaa
     3421 aaaaccaaac tttttaataa aaaaacaaat cctccaaaac taaaagcatt tagtaaaaaa
     3481 cctccactaa actctttaaa aatcaaaaaa tgtaaaattt cactctccct aaaggcgtaa
     3541 aaaaaagcaa ataaaaaagc actccaaagt aaaatttgtg gtacggcttt gagtttaata
     3601 tcaattaaag aaagtaagaa aagattaaat aaaaatagag ataaaaataa aaaatcataa
     3661 aaattttgac ttaaagaata aaccaaaata agcaaaattg cgcctaaaat ttcattgatt
     3721 aacaaagaaa taggcaaatg acatttacaa gtttgacatt ttgcctttaa aaaaatataa
     3781 gaaaaaatag gaataatttc atagtatttt aattttgtat cacaagaaaa acaaaaagag
     3841 cgcgagataa aaaagggctt tttttcaatt atcctacttg ccaaacttgt gcaaaaagaa
     3901 cccaaacaag cccctagaat tattatgaaa aatatcattt tccaaaagtt ctttctctat
     3961 ttctaaattc tttaataatc cttttaaatt ctctcttggt aagagatgga aataaagttt
     4021 cactaaaata aatttcagca tatgaacact gccaaagtaa gaaatttgaa agtcttttag
     4081 cgtttccaac gcgaagcatc aaatccacat ctaaaggtaa atctaaattt tgcgttaaat
     4141 tttcttcatt tagctcaagt tttttttcaa tcgcacgctt agcagctctt ataatctcat
     4201 ctcttgcacc ataacttata gccaaattaa cacaaagtgc gtcacaatgc tttgtttttt
     4261 cttcaactaa ggtaattttt tctcttactt tatcttccaa gcgcgataaa tcacctatag
     4321 ctcttaaacg cacattattt ttttcaaatt tttctaaagc ttcatctaaa caacgatcta
     4381 aaagttcaaa aataaaatca atttcatctt taggacgctt ccaattttcc gtactaaaag
     4441 caaaaaggct taaatttgaa atattttctt ccatgcaaac ttccatcaat ttttgcatag
     4501 ttttaactcc ttgggaatat ccaagttttg ccaaaaaacc cttagcccta gcccagcgcc
     4561 tattgccatc cataacaaca gcaaggtgtt ttaattcatt catttttcat cctttaaaat
     4621 caaaaagcct tttgaaaaca aacaaaggtt caatcttgtt ttcttgcgat acattaaaat
     4681 ctaaatgttc gtttaaaaat ttttgcacct tagcaaaagg tgtaaaaata ctaacacctt
     4741 gtgaatctat taaaattttc aaagctccaa aaacactaaa atataagtaa atttctaaat
     4801 attttgctct tttacgcatt tgaaacaagc aagatttatt ttcaaagata aaaggaatat
     4861 gataaatatt ttcaaaactt gcaaaaagca tttcttttaa tatctgataa cgctctatat
     4921 ctttacaatc taaaagattt tgtatgatga attttttata agaaatttta tcctctaaaa
     4981 tagcgattat caaagccaat ccctcttcaa aaggtttaaa attaggacgc tttgaaagat
     5041 gtttaaattg tataactcca ccattttgca tataaagttc agctaaatat tcagcaccaa
     5101 tttcaagctc tatcatgctt ttggtttgaa tctttttatg atttaataaa agcgtataat
     5161 gtccataacc tgatttagct aaaactttca tttgtatagg taaggtagaa ttaatcatac
     5221 tcataatttt tcacaccatt ttactaattc aaatgccaat ttttctttgc tttgcaaagt
     5281 gcttttattt tcattgttta aagtgataaa ataaagctca ttttgatcgc ttccaaaata
     5341 atttttttga tcaatgatat taagacaaac catatcaagt tgcttatctt ttaaagattt
     5401 tttcgcattt tctaaggcat tttgagaatc aaattccatc ttaaaaccta tctttttgct
     5461 ttgaaatttg caagttttaa gcaaatcttc atttaaagat agatgcaaat ttaaaccctg
     5521 taaatgctca ttttttttaa ttttcccttt tacactttga gggataaaat cactcaccgc
     5581 agccgtcata atcaaaaagt catgatttaa atttttatcc aaaagctcct ttagatcctt
     5641 agaactttca aatttgcaaa gctcataagg cgtatcaaat tccacagagc ttaaaagttt
     5701 taccctagct cctaaaaaat aaaaagcgtc agctatggcc tttgccattt ttccacttga
     5761 aaaattactc acacaacgca catcatcgat cttttctttt gtgccgccac ctgtgacaac
     5821 tacactttta tcgcaccaaa acttttcttt taaaagctct cttttggtga tattaaaaat
     5881 atccttaact tcagctaagg ctcctacgcc ttcatcttta caagctaaaa ctttacaaat
     5941 aggctctata atcaaagctt tattttcttt aagtatcttt aaagaatttc gcgtgctaaa
     6001 atgatgaaac atatttgtat ttgccgcagg agctatgata agaggtttat ttgctgcgat
     6061 taaggtttgg ataaaaagat tatccgctat accaaaagca agtttattga tagaattaac
     6121 acttgcaggg gcaaacaaaa caaggtctac atccttgcta aaagctatgt gattgtttga
     6181 attttgccaa ctttcatttt cctcacataa aacttcatca accaaggctt caaaactcat
     6241 tttgctagca aattttaaca aaccattaga aagcaaaact tttaccctaa agccttcttt
     6301 tttaaacaaa gaaataagct cataagattt ataaaaagct atactaccgc taatggctaa
     6361 aagtatggtt ttcatttttg aaatttctta taataataat cttttatcat tttatgccct
     6421 gctctattga taaacaaagc acccttttct acattgacac ttactgtgct tcctgctgct
     6481 atgatcactt catcttcgat ttttacaggt gcgataaatt gcgtatccga acctacaaaa
     6541 acattttttc ctatgatggt tttatgcttt tttaccccat cataattaca agtgatagtc
     6601 ccacagccta tattggttcc actatctatc tcacaatctc ctaaatagct caaatgccct
     6661 gcttttacgg tatttaactt tgcatttttg cattctacaa aatttcctat atgagtgttt
     6721 tttaactcac aatttggacg caaatgtgcc aaaggcccta catcgctatt ttctacgatg
     6781 gaattttcta tcacgcttga acttttaatg atagagttta taatcttact tttgccctct
     6841 atccttacat tttcatatac ttcacattca cctacaaatt caacatctgc acctataaaa
     6901 gtgctttgcg gtaaatgaaa aatcacaccc tgttgcatcc agtatttttt aattttttct
     6961 tgcatgaaat tttcagctat actgagttca aatttatcat taatccccat aaattcatct
     7021 tcatctacaa aaactgcttt aatcatcaca tctttttctt ttgctagttt tacaatgtcg
     7081 gttaaataat actcttttgc cgcattattg ttatcaatca aaggtaaaag ctcttttaaa
     7141 agcctcgagt caatcacata aaccccagca ttgcaagtat ttatctcttt ttcttgcgta
     7201 tttgcatctt taaattcaac aattttttca acgctatcgt tttttatcac caccctacca
     7261 taacttttag gatctcttgc tttaaaaact gctagattta attttgcatt attactcaac
     7321 aaagcttcca aacttgtttg ctcaactaaa ggcatatcac cacaaagaat caacactctt
     7381 tcatttttag gctcaaaccc acttaaagct cccgcagttc ctggataatt ttgcaaatct
     7441 tgctctaaaa tttgtgtttt tggaaaatat tctaaaattt ctttttcaac gcgttctttt
     7501 tgatgcgata aaactacact tacatcatca cttaaagcaa aagccttttt taaaatgtgt
     7561 aaaatcatac ttttttgaca aagctcttgc aaaacctttg gcttttgtga ttttattcta
     7621 gtgcctaatc ctgccgctaa aatcaaaata gaagttttca ttttttacct ttgttattaa
     7681 gaagtctaaa agactatttt agcagtttaa agttaaaatc ctaataccct taaactagtt
     7741 tttagtcatc aaaagataaa atttaaattt ctttaataaa aaacaaaaaa aggtttttaa
     7801 attttgaaaa aaatattatt atttttactt ttaagcatga gcttatttgc tgctgaagta
     7861 actatcccta cagtaaattt aagcttaagt gcacccaata cacctaatca gcttgttact
     7921 actttaaata tagtgattgt tttaaccata cttgcgctcg ctccaagtat agtttttgtt
     7981 atgacttctt tcttgcgtct tattgtagta ttttcatttt tacgacaagc tatggggacg
     8041 caaagtatgc cacctaacac tattttggta accttggctt taattttaac tttttttatc
     8101 atggaacctg tagctacaaa atcctataat gaaggtataa aaccttattt agcagaaaaa
     8161 ataggctatg aagaggcttt tataaaagga gcaaagcctt ttaaagattt tatgcttaaa
     8221 aatactcgcg aaaaagattt agcccttttt tatcgcatac gcaatctacc caatcccaaa
     8281 accatagatg atgttcccct tacggtttta gttcctgctt ttatgatttc agagcttaaa
     8341 accgcttttg aaatagggtt tttaatctac ctgccctttt tagtcataga tatggttgta
     8401 agctcagttt taatggctat gggtatgatg atgctgcctc ctactatgat ctctttacct
     8461 tttaaactct taatttttgt attagtggat ggatggaatt tgctagtgca aaggcttgtg
     8521 gaaagctttg taacctaaga aggaaaatcc ttcttagaaa aagaattcta aattattctt
     8581 tttaaaagta tctttaacat ctttaagata tttctctcct aaagaatcaa aaagcccatc
     8641 ttttttgctt tctgcaataa attcatcaag ctctttttta agttctgcat tgcctttttg
     8701 tactgctata ccccaaaact caggattttc ttgaaaaggc gctaaaatgg ctctggttgt
     8761 atcttgatgc ttttgccaag tccgataaat cgtaagttga tcataaaaaa atccatcagc
     8821 cttgccttga atcacttcca aaatagcagc attttcttta tcaaataaat taatagttgc
     8881 attttttaaa tttttaaccg catataaatg ccctgtagaa ccacgcttta aagccaaaac
     8941 tttgcccttt ttatctaaat ctttgatatt tgtaatatca gagttcaaag gagttaaaat
     9001 agccaaattt gccttagcat aaggaatgct aaaatccacc actttctttc tctcatcggt
     9061 aattgtcata gaggacataa taagatctat cttggctgtt tttaaagcag gtattaaacc
     9121 atcccaagcg atatttttta ctacaagttt atagccgttt ttctttgcaa aagcttctaa
     9181 aaaatccacg ctaattccac ttgctttgcc tgttttatcg ctcatttcaa aaggcggata
     9241 tccaagctcc attcctacaa ccaaatcttt tgcactcaaa tttaaagcaa aaaaagagat
     9301 aaaaatcaaa ataatttttt tcataatttc ctttcaaatt tttttgtaaa aaaattatac
     9361 taattttatc ttattttgtt attagcaatt tgtttcaaac ttaaaaaatt aaaacttcta
     9421 aaccctagtt tgtcctataa gattattaag tctatccatt atagaattaa cataagagtc
     9481 tatactttgg ttacttgctt tccaaccatt agcttttact tgattaaatt ct
//
LOCUS       DARGBD010000065         9507 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.065, whole genome shotgun sequence.
ACCESSION   DARGBD010000065 DARGBD010000000
VERSION     DARGBD010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9507
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.065"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(83..1884)
                     /locus_tag="SFZ04_001274"
                     /pseudo
     CDS             complement(83..1884)
                     /locus_tag="SFZ04_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860373.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
     gene            complement(1897..2571)
                     /locus_tag="SFZ04_001275"
     CDS             complement(1897..2571)
                     /locus_tag="SFZ04_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG8065544.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINNKPFLEFIFEYLKKQ
                     GIKEIILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEAYVL
                     NGDTFFDIDLSKLKLNRSKICLALKQMNDFDRYGMINIDKHGLVISFEEKVFKKQGLI
                     NGGIYLLTKDIFNDFALQEKFSFEEFLQENYKKLKARACIFDDYFIDIGVPEDYYNFT
                     SNQSYF"
     gene            complement(2559..3164)
                     /gene="gmhA2"
                     /locus_tag="SFZ04_001276"
     CDS             complement(2559..3164)
                     /gene="gmhA2"
                     /locus_tag="SFZ04_001276"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG8065545.1"
                     /translation="MEVINSYIKEHFQESILVKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGVSGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFFCKQ"
     gene            complement(3170..4168)
                     /locus_tag="SFZ04_001277"
     CDS             complement(3170..4168)
                     /locus_tag="SFZ04_001277"
                     /inference="COORDINATES: protein
                     motif:HMM:NF020073.1,HMM:NF024880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8065546.1"
                     /translation="MYSSAGYYQTKNFTSRLNKHIIEIKNTIMKYAKNTDIFLEIAPG
                     RGDLALALSREVSFIYTIDPSKSSSNYDKTKNMKHIQGFFSKKFLDEQVDNKINFIVF
                     RHLLEHIDNPKIFLKDIVEYLDENGMIYLEVPNAHDILRYKRFIDIYHDHCGYYQEAT
                     LVNIMNHLGCKLIEKVKYFDEQHIGLFFLKKQIRKYQEPFVFYNNIKDSFDIEIKYIN
                     DVLSRYKNIGIYGAGVQGHTLINHLNYKNLLKIVCAFEINRDKVGKYMVNSNILINYP
                     DRKSLEKLDCLIMAIPSHEVYAYENEILDFIRKKYFQGDVIRTAKGIECFKFSKGK"
     gene            complement(4383..5402)
                     /gene="hddA"
                     /locus_tag="SFZ04_001278"
     CDS             complement(4383..5402)
                     /gene="hddA"
                     /locus_tag="SFZ04_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HEG8065547.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIEREDGKIIFDSPDTNSYSEYESKEFLGDDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARIVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALSKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            complement(5477..6415)
                     /locus_tag="SFZ04_001279"
     CDS             complement(5477..6415)
                     /locus_tag="SFZ04_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase"
                     /protein_id="HEG8065548.1"
                     /translation="MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLS
                     CSHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVK
                     MISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGN
                     CVTFRLATVFGISPRMRLDLLVNDFTYRAYKDKFIVLFEEHFRRNYIHVRDVVKGFIH
                     GIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYVPDFYIHSASIGEDPDKRDYLVSN
                     AKLEATGWKPDNTLEDGIEELLRAFKMMKVNRFANV"
     gene            complement(6439..7473)
                     /locus_tag="SFZ04_001280"
     CDS             complement(6439..7473)
                     /locus_tag="SFZ04_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEG8065549.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKAGVKLNEETAFHGASPYSI
                     SKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVI
                     KVGNLSSVRTFQDARDAIRAYYLLSLESEKGKVPCGEAFNIAGEEAFKLPEVIDILLN
                     FSDMGGGIEVRQVEDRMRPIDADYQMFDNGKIKSFIDWKAEIPVRQMLKDLLNHWRNE
                     IKRGRIPLNR"
     gene            complement(7482..8522)
                     /locus_tag="SFZ04_001281"
     CDS             complement(7482..8522)
                     /locus_tag="SFZ04_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEG8065550.1"
                     /translation="MQKNSKIYIAGHGGTLGKTLYNTLIDEGFNNIIVKTRKELDLVD
                     QKAVTDFFAKEKPEYVFLCAAKLDTLGLFTPADVIYENSVLQANIIHSSYQNNVKKLI
                     FYGSAWAYPQKAINPIKEENLLDGKLDLKAVAYGLPKIIGTKMCESYNLQYGTNFITL
                     YLANLYGETTEFDLQKAKVLPALLRKFHLAKLLDENKIDEVLKDLQMNSLEQAMEYLQ
                     KFGVSKDSVEIWGGGSVIREFIHAKDLADASIYVMKNIDFKNIVSSNEPHLNVGSGEF
                     LSIKELAFLIKNIVGFKGEIVFNNSKPDSTMDRMLDSSRLQNLGWKAKIKLEDGIKMM
                     YEWYLKEQNIRQ"
     gene            complement(8522..9067)
                     /locus_tag="SFZ04_001282"
     CDS             complement(8522..9067)
                     /locus_tag="SFZ04_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEG8065551.1"
                     /translation="MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTSEAVDKLL
                     PNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSPTYLKHER
                     FIINQDNQKIILVPAGFGNAHYVSSETAVYYYKCAYLGEYMDAPDQFTYAWNDERIGI
                     DWPTNNPILSERDILAMSKDK"
     gene            complement(9067..9474)
                     /locus_tag="SFZ04_001283"
     CDS             complement(9067..9474)
                     /locus_tag="SFZ04_001283"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065552.1"
                     /translation="MKHNNTLLLKLIDKIKYNLCYNGELRLKGTLQYKLGQVFLNIFT
                     KSNIIDVLFFLSRYKKEKKKIELFIQNFNINIPSFEQCYDYSNAKRIEHYLSYNIGKI
                     MIQAHQSWYKGAYFILPYKIYMLYKNFKYKKGK"
BASE COUNT         3170 a         1677 c         1076 g         3584 t
ORIGIN      
        1 ttcatatggg ggggggatct cctttaaaaa ataaattaat acaaaaacga gaaataatta
       61 tatataatta ttgattaaaa aattataaag atgggttttg attattctca tctaactctt
      121 tacacattct ttcaaattct tggtagtatt tccaagaagc tactatatcc ggacgatgtt
      181 gcttgatatg ttgcaactca taatcaaaaa gttcttttaa tttaatagtt ttttctttct
      241 tttcctctgt aaataaaaat tttaaatact gactaggagt tatttttcta gatctttcaa
      301 tgccaacttg tttttgaaat tcttgtataa atttttttaa aaaagtgttc atttttttta
      361 attctttctc atcattaatt aacaaagcat aacaatcaga tttaacaaaa attttaaaat
      421 ctaacacatc ataatcatat gatacaagat cagttatttc gctatagttt tcccaaactt
      481 tatcattaag caatactgaa gcatgagttg aaataaaaaa actaaatcta cttgacacaa
      541 tttctagacc attaaaatac caagaatatc caaaattaat atttttaatt tgatcattaa
      601 tgtttaaact gatatttaaa aaattaaaaa ttttaataaa agtgtttaca atatttattg
      661 attgcaattc attcatatca atatataaga tatcctttaa tttcaagaga tctacaaccg
      721 aatattcaaa ataacatgct ctcaaaccca tatttttaga aaaaataaaa tttttctgag
      781 cctctaaact attaacatat ttatataaat ttaattttcc atctaaattt gaatcaatgc
      841 taattttcat tgaaaaattt gggtttctaa ttttagcatt aatataagtt tctaaaatac
      901 aaataggatc tcgagtgaaa taaatacatt tggatttttt agctatcatt aataaatatt
      961 tatcacatcc ttcaaatcca taatcaaata tatctaaaaa aaatattttt ttagataaaa
     1021 aagttacata agcttgataa tatcggaatt taccttcggc ctcatggttt aaataactag
     1081 gattatgata tcctaaaaat tttaaaattg ccaacacgct cttcattccg acaccatgac
     1141 taccaaaaat cacaaactca tacctatccg gtaagggcaa attcatctcc caagcaagtt
     1201 cagcaggtat atttttataa ttaatttttt cgttttcatc atttagtttc ttgggatcaa
     1261 gtaaagaagg ataaggatga cttccttttt tatatctttc attaaaatca tctgataaca
     1321 accattcttc tataagatca aaattttgta taaaataatt aaagttgtga aagatattat
     1381 ctagtattgc tttatagtct tgatgaattt ttaatatatt ttttattctt ggaaattctt
     1441 ttaggaatag ttgtttatta tttatcaatc cttcaagaat gctagagtta atctgatcaa
     1501 attctttaaa aatttctcta aaaatttgaa attctttatt tgctttttta atatcatttt
     1561 ttagtttaaa tccacttcct ttatgccaag ttttatcagc cttgattaaa acttcaccca
     1621 gcatatagga caaatgaaat ttatatctta aagcttgttc ataatcacca catgtttcta
     1681 aacttggata tttgagctga ggaaagattt gtatagtttg ttgataaatt ttttgttctt
     1741 ttttatgttg ttttttgatt ttatagagtt ttttaaataa tgctatatac cccccccatt
     1801 gtttgtaaag tcaatcatag cttgacctag tttataagca agatgatttt ttactctttc
     1861 tatagctgag tttgggttat acatagggtt tctcctttaa aaatagcttt ggttgcttgt
     1921 aaaattataa taatcctcag gcacgccaat atctataaaa taatcatcaa aaatacaagc
     1981 tctagccttt agctttttat aattttcttg taaaaactct tcaaaagaaa atttttcctg
     2041 caaagcaaaa tcattaaaaa tatctttagt taaaagataa attccaccat tgattaaacc
     2101 ttgcttttta aatacctttt cctcaaagga aatcacaagc ccatgcttat caatatttat
     2161 catgccgtat ctatcaaaat cattcatttg ttttaaagcg aggcaaattt tacttctatt
     2221 tagctttaat ttacttaaat ctatgtcaaa aaaagtatcg ccatttaaaa cataagcctc
     2281 gttttttata aatttcaaag cctcttttat ggctccgcct gttcctagag gctctttttc
     2341 gatactgtat tttattttta tacctaaaaa ctcatcttta aaatactctt ttatcacttc
     2401 atatttgtat gatactgcta agataatctc ttttatgcct tgttttttaa gatactcaaa
     2461 aataaattct aaaaaaggtt tattatttat cggtgccata ggctttggaa tgtcctttat
     2521 aacactttta agtcttgttc ctaagccgcc acaaagtatt attgcttgca aaaaaaacct
     2581 ttaccgaaaa gctcttcttc gacaatagca caaataatat gtcctattaa aatatgtgct
     2641 tcttgaattc ttggcgtgca agttgaaggc acttttatac aataatcaca aagttcattc
     2701 atcgctccac cactaactcc acttaagcct atacttatga tttctttttg tttgcaaagc
     2761 tctaaagctt ttaagatatt tttactattt ccgcttgttg aaatgcctat aaaaacatct
     2821 cctttaacac cttgagcttg cacttgtcta gcaaataaat tttcataacc ataatcattc
     2881 ccgatagctg ttaaaatact tgtatctgtc gtaagtgcga tacttgcaat accgggccta
     2941 tcaaaataaa acctacttac aaattcccct gcaatatgct gtgcatctgc tgcgctacca
     3001 ccgtttcctg ctaataaagt tttgttacca tttttataag cttttatgac ttctaatgaa
     3061 gcatttttaa taagagttat caaattctca tcttttaaaa tttgctcttt tactaaaatt
     3121 gattcttgaa aatgttcttt tatatatgaa tttataactt ccatgatttt tatttaccct
     3181 ttgaaaattt gaaacattcg atcccttttg cagttcttat aacatctcct tgaaaatatt
     3241 tcttccttat aaaatctaga atttcatttt catatgcata tacttcatga gatggtatag
     3301 ccataattaa acaatccaat ttttctaaac ttttccgatc tggatagttt attaaaatat
     3361 ttgaattaac catatattta ccaactttat ctctattaat ttcgaaagca caaacaattt
     3421 tcaataaatt tttataattc aaatgattga ttaatgtatg cccttgcaca ccagcgccat
     3481 aaatacctat attcttatac cgagataaaa catcatttat atattttatt tcaatatcaa
     3541 aactatcttt tatgttatta tagaaaacaa atggttcttg atatttccta atttgttttt
     3601 ttaaaaaaaa taaacctatg tgttgttcat caaaatattt cactttttca ataagtttac
     3661 accctaaatg attcataata tttactaaag tagcctcttg ataataacca caatgatcat
     3721 gataaatatc aataaatctt ttatatctta aaatatcatg tgcattcgga acctccaagt
     3781 aaatcatacc attttcatct aaatactcta caatatcttt taaaaaaatt ttagggttat
     3841 caatgtgttc taataaatgt ctaaatacta taaaattaat tttattatca acctgctcat
     3901 ctaaaaattt cttactaaaa aatccttgta tatgtttcat atttttcgtt ttgtcataat
     3961 ttgaacttga tttagaagga tctatagtat aaataaaact aacttctcta gataatgcta
     4021 aagcaagatc acctctgcct ggtgcaattt ccaaaaaaat atcagtattt ttggcgtatt
     4081 tcattatagt atttttaatt tctattatat gtttattcaa acgagaggta aaattttttg
     4141 tttgataata cccagcactc gaatacattt tctgcatctc atttttatta aaagcaagat
     4201 tttctatata accacatttg tcgcactgcg ataattttat actccccccc ccctagcata
     4261 attatgtaaa tgcatgctag gtttttcttg taaattttca gcagaaataa aaatattatt
     4321 ggctttaaat ataatattct catgatatac ttggccgcat aaactacatt tttgtaaatt
     4381 attcatattc tccatgattt aaccccctct tttgtaaatg aaaaatcttg cacataacct
     4441 tgctctttgc ttaaagcttt gattaggttg tattttttag taggatctac aaagaaaaac
     4501 ataaatccac ctgctcctgc tccactagtt ttgccactat aagctccatt atctatagct
     4561 agtttataaa ttctttcaag ctcatcattg ctaacgattt ctgaaatgat tttttttgac
     4621 tgccaagact tgcctaaaat tttcgccaaa gtatcaaaat ccgccttaaa taaagcttct
     4681 ttcatcttta tagcatcttg ttttatagcg tgcatagctt caagggattt ttcatctccg
     4741 agctttcctt ttttatgctc ttctatatct tttgcttctc ttgtgatatt tgtaaaataa
     4801 agcacaattc tagcttcaag ctcactagct atccagtttt taatacgcaa aggattaacg
     4861 attactcttt tattatcata aaattccata aaattaaagc caccaaaagt tgcggcgtat
     4921 tgatcttgtg ctccgcctac tatgcctaaa tcttctcttt ctatctcata agcaagctta
     4981 gcgatttcat attctcctaa aggtagatta agccattctg caaaggcttt tataacccct
     5041 acaaccaaag ttgagcttcc gcccaaacca ctaccacttg gtacatctga gtatgtatgc
     5101 aaagaaaaac ttaaaggttt ttttgtaaaa tcttttacaa tgcgattata aatactttta
     5161 aaaatatcta attttccatc atctcctaag aattctttac tttcgtactc agagtaagaa
     5221 tttgtatcag gagaatcaaa aatgatcttt ccatcttctc tttcgatcaa agtgcaatgt
     5281 atgtataaag atatagtcgc atttaaaaca taacctgtgt atttatcaca atataaattt
     5341 atatcagttc ctccgcctgc tagaccgaga cgaagaggag tttgtgtgcg tatggttttc
     5401 atcgaattcc tacttatttt gctataattt attataaaaa ttatagcaaa atatacttaa
     5461 cttctattaa tatcacttaa acatttgcaa agcgattaac tttcatcatt ttaaatgctc
     5521 ttaaaagttc ttcaatgcca tcttctaaag tattatctgg tttccaacct gtagcctcta
     5581 atttagcatt tgaaaccaaa taatctcttt tatccggatc ttcacctata ctagctgaat
     5641 ggatataaaa atcaggaaca tactttttaa tcgtttcagc aagctgtctt ttagtcaaat
     5701 ttgcagaact taatcccata ttataagcct gacccttcat cttatcataa ttctcaattc
     5761 catgaataaa tcctttaacc acatcacgaa catgaatata attgcgtcta aaatgctctt
     5821 caaaaagcac tataaattta tctttatatg cacgataggt aaaatcatta acaagtaaat
     5881 caagtctcat tctaggtgaa attccaaaaa cagtagccaa acgaaaagtt acacaatttc
     5941 ctttatcaag caaatattgc tccgcatgca ctttatcaat cccatattct gagataggac
     6001 gcaagggaga ttcttcagtg cacattgcat ctttttctcc tataccataa ccgctatttg
     6061 tattgggata aataaatatt tgagaaggac ttgcaaaatc gcttatcatt tttacagctt
     6121 cataattgat cattttggct aattttggat ttcttttgca aagtggagct ccaaccaaag
     6181 cagctaaggg aataataata tcagcttttg ctacctcttg tctaataaga ttttcatcca
     6241 tagcatcacc atttataaaa gtaaaatttt tattatgaga acaagataaa agagagattt
     6301 gatcaaacat caaattatca atcacacaaa cttcataacc tttttcaagt aaaatcggtg
     6361 ttaaaaccga acctatataa cctgcaccac ctgtaattaa aacttttttt gacatatttt
     6421 tcctttaaat cgatggtttt atcgatttaa aggaattctg cctctcttaa tttcatttct
     6481 ccaatgattt agcaaatctt taagcatttg tctaacagga atttcagctt tccaatcgat
     6541 aaaactcttt attttaccat tatcaaacat ttgatagtca gcatcaatag gacgcatcct
     6601 atcttcaact tgtcttacct caataccccc ccccatatca ctaaaattta gcaatatatc
     6661 tataacttca ggaagtttaa aggcttcttc tcctgctata ttaaaagctt ccccacaagg
     6721 aacttttcct ttttcacttt caagagaaag tagataataa gcccttatag catctctggc
     6781 atcttgaaaa gttcttacgc ttgagagatt tccaaccttg ataacaggct cttgataacc
     6841 cgcttcaatt aaagcaattt gttttgcaac tgtgctttca aaaaacacat cagaacgtct
     6901 tgggccacta tgtgttccca ttcttgtaac aaaagtgcga atgttataag cttcgccata
     6961 aaatcttccc aaataatcag tgccaatttt gcttatactg taaggacttg caccgtgaaa
     7021 agctgtttct tcattaagct taacacctgc ttttgcttta ccataaactt cacttgaaga
     7081 gcaaatatgc actacagggt catatccatc ttttgccttt aaaattctaa tgttttccaa
     7141 aatatttgct gtgcctatta tgttagtctg taaagtttct ataggtatat caaaagaagt
     7201 ttttggataa gactgagctg ctaggtgaaa aatcacatca ggcctttgac tctcaaaaag
     7261 tttttgaaga ctagagtaat catttaaatc tgcataaaaa atactgattc tatctttttt
     7321 attgatccta tcacttaaat gatagatatt atccataggt tcttgccaac gcatcatacc
     7381 tataacatca tagtctgtgt tttctagcaa gaaatctgcc atttgagaac caacttgccc
     7441 tgtaaatcct gtaattaatg ctgttttttt catgattttt cctattgtct tatattttgc
     7501 tcttttaaat accattcata catcatctta atgccatctt caagcttgat ttttgccttc
     7561 cagcctaaat tttgcaatct tgaactgtct aacattctat ccattgtaga atctggtttt
     7621 gaattgttaa acacaatttc acccttaaat ccaacaatat ttttaatcaa aaaagcaagt
     7681 tctttgatac ttaaaaattc cccacttcct acattaagat gcggttcatt agatgaaaca
     7741 atatttttaa aatctatatt tttcatcaca taaatagaag catcagctaa atcttttgca
     7801 tgaataaatt ccctaattac actaccacca ccccaaattt ctacgctatc tttacttaca
     7861 ccaaattttt gtaaatattc cattgcttgc tctaaggaat tcatttgcaa atcctttaaa
     7921 acctcatcaa ttttattttc atctaaaagt tttgctaaat gaaatttgcg aagcaaagct
     7981 ggtaaaactt ttgctttttg taaatcaaac tcggttgtct ctccatacaa atttgcaaga
     8041 tacaaagtga taaaatttgt tccatattgc aaattataac tttcgcacat ttttgttcct
     8101 ataatttttg gtaaaccata tgcaacggct tttaaatcta gctttccatc taataaattc
     8161 tcttctttaa tgggatttat agctttttga gggtaagccc aagcagaacc ataaaaaatt
     8221 agctttttaa cattattttg ataagatgaa tgaatgatat ttgcttgaag tacgctattt
     8281 tcatagatta catcggctgg agtaaaaagc cctaaagtat caagcttggc agcacataaa
     8341 aaaacatatt ctggtttttc ttttgcaaaa aaatcagtca cagctttttg atctactaaa
     8401 tctaattctt ttcttgtttt tacgataata ttattaaaac cctcatctat aagtgtatta
     8461 taaagagttt ttcctaaggt accaccatgt cctgctatgt aaattttgga atttttttgc
     8521 attatttatc cttactcata gctaaaatat cacgctccga aagaatagga ttattagtag
     8581 gccaatctat gcctattctt tcatcattcc atgcataagt aaattgatca ggagcatcca
     8641 tatactctcc taaataagca catttataat aataaactgc agtttcacta ctaacataat
     8701 gagcatttcc aaaacccgct ggaactaaga taattttttg attatcttga tttatgatga
     8761 atctttcatg ctttaaataa gttggggaat cttttctgca atcaaccaca acttgatgca
     8821 cttctccata gacacaagtg gctaacttat aagtttttac atcaccatgg ataccgcgaa
     8881 taacattatg tttagaatgt atgaatttat cgtgtataaa ttttaatcca tttggcaaga
     8941 gtttatctac agcctcgctt gtaaaagctg tccaaatttc acctcttaaa tctctaaatt
     9001 tgttaggagt tatgatatac actcctttta aaatttttga ttcttgtata tcaaattcta
     9061 ttgccattat tttccttttt tgtatttaaa attcttataa agcatgtata ttttataagg
     9121 caaaataaaa taagctcctt tataccaaga ctggtgagct tgaatcatta ttttacctat
     9181 attataagat aaatagtgct caattctttt tgcattgcta taatcataac attgttcaaa
     9241 tgatggaata ttaatattaa aattttgaat aaataattct atttttttct tctccttctt
     9301 atatcgactt aaaaaaaata aaacatctat tatattactt ttagtaaaaa tatttaaaaa
     9361 cacttgtcct aatttatatt gcaaagtacc ctttaatcta agttctccat tataacataa
     9421 attatatttt attttatcaa tcaatttcaa taaaagcgta ttgttatgtt tcatacttat
     9481 taactcatct agatattgca aggcaca
//
LOCUS       DARGBD010000066         9350 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.066, whole genome shotgun sequence.
ACCESSION   DARGBD010000066 DARGBD010000000
VERSION     DARGBD010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9350
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.066"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            11..2102
                     /gene="cfrA"
                     /locus_tag="SFZ04_001284"
                     /pseudo
     CDS             11..2102
                     /gene="cfrA"
                     /locus_tag="SFZ04_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
     gene            2402..3196
                     /locus_tag="SFZ04_001285"
     CDS             2402..3196
                     /locus_tag="SFZ04_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HEG8065553.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            3193..3723
                     /gene="grpE"
                     /locus_tag="SFZ04_001286"
     CDS             3193..3723
                     /gene="grpE"
                     /locus_tag="SFZ04_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEG8065554.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVTVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            3745..5616
                     /gene="dnaK"
                     /locus_tag="SFZ04_001287"
     CDS             3745..5616
                     /gene="dnaK"
                     /locus_tag="SFZ04_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEG8065555.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLASEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIEGKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            5749..7659
                     /locus_tag="SFZ04_001288"
     CDS             5749..7659
                     /locus_tag="SFZ04_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG8065556.1"
                     /translation="MEQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRVD
                     AVLEPTKDKVLKTYNTYKDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRI
                     NFENYLDCFSENIKDIILKFKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEK
                     GNVIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIK
                     QGTWLIYDNACGSGGMLTESKEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLI
                     KGENPERIKFGSTLSNDQQNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPR
                     FSVGITSKSDGQMMFLLNMLSKMKFDTPLGSRIASVHNGSSLFNSDSGMVAIRKHIIE
                     NDYLEAIVALPTNMFYNTGIPTFIWIITNKKSEHKKGKVQLINTTNEEYFSKMKKSLG
                     SKQNEMTKEHIEKITKLFLENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFA
                     KLKDKDKILEKLQELEQNPQDFKNREEFIKFLGVKLKKSEENLIIDSDKTNNTEKIPL
                     KTNIQGYYDTEVKPYVANSWIAWESASVGYEILFSKYFYTYTPPRKLEEINNELEKLE
                     KEVQDLLREIVQ"
     gene            7656..8933
                     /locus_tag="SFZ04_001289"
     CDS             7656..8933
                     /locus_tag="SFZ04_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG8065557.1"
                     /translation="MKNFKESGIEWLGEIPEHWEVVKINKIVTFVNGYAFENFDFNPI
                     FEIPVIRIGDMQKEKILYDNCLKTKEKEKLKQFLISNNDILIALSGATTGKIAFCDTD
                     NKAYINQRVAIVRSKLKLVKYYFLTRGFSLLIELACNGSAQPNISTKEIGEFKIPLPP
                     LKEQEQIANFLDEKCKKIANFIEKKEKLITLLKEQKQALINETITKGLDKNINFKDSG
                     IEWLGEIPQHWRIVKLKYVAFTNIGLVYTPDDIIENPDEGYPVLRANNIQNGKIDYQD
                     LIYIKSKQIGKKQIISSGDLLMCVRNGSENLLGKTAKIQDGYFSFGAFTAIIKSQFND
                     YFYWIFQTNMLRKSIASFSASNGIGQISQDDIKNFIISFPPLKEQEQIAQFLDSEISK
                     IDKIIEKTKKQIKLIKEYKTTLINQAVCGRIDL"
     gene            8944..>9350
                     /locus_tag="SFZ04_001290"
     CDS             8944..>9350
                     /locus_tag="SFZ04_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065558.1"
                     /translation="MEENNLEYIKQNFQIHYYFDDNSHSMNAFVRNAMEKDFLNFINE
                     IGNILDIKIKLESQAREEGGLKENIIICLIGSALCYFAPAVNNILTFYLTEQNKLQNA
                     DLKLKDLELKLKELDLKLKEEELKNKKTQNEYI"
BASE COUNT         3622 a         1231 c         1721 g         2776 t
ORIGIN      
        1 aaggagaaaa atgaaaaaaa tatgtctatt agtttgcgcc attggtctct taagctccaa
       61 tgccatatcg caaaatgtag aactagatag ctcaatcgtt agtgcttctg gctttactca
      121 agatattaaa gaagctcctg ctactatcaa tgttatcagt aaaaaagaat tacaaagtaa
      181 gccttataga gatgttgcag aggctatcgc agatatccca ggcgttgatt tatatgctag
      241 caagggaaaa acaggttctt ataatattac catgagaggt attacgggat atactttggt
      301 tttgattgat ggacgccgtc agggtattgg cggggaagtt ggtcctaatg gctttaatga
      361 aatttcaaat tctttattac ctccaatttc tagcatagaa agaatagaag ttataaaagg
      421 tcctatgagt actttatatg gctctgaagc tttaggcggg gtggtaaata ttattaccaa
      481 aaaagtaagt gataaatggg aaacttctgt aagtttggat gctcttttaa atgaaaataa
      541 agattggggc aatacttatg gaacaagtat ttattctagt ggtcctttga tgaatgataa
      601 attaggtcta acgcttcgtt ttagagaatt ttatagacag caatctaatg ttgaatttac
      661 aaatggaagc gggcaaagag ttcaagggga tcaagctcaa agtcctacaa aggcaaataa
      721 ttttaacata ggaacaagaa ttagttattt agctaatgat tataatactt ttatatttga
      781 tatagatttt tcaagaaatc attacgacaa taaacaaggt caattaggaa ctattacaag
      841 tccaggtaga acaccaggta gtttaacggg tggctatgcg gatattatgg aagttgataa
      901 atttgtgact tacttaagtc atgagggtat ttatgaaaat ttttctatta cctcgacttt
      961 gcaatacaat agagtaagca ataatggtcg cgaagttgta ggacaagcaa cgcagccatt
     1021 tttgggagaa aatagagata tagtcgcaga agatattatc ttagatacta agtctgtcat
     1081 tcctttggga caaagtcata ttttgagcgc aggtggtgaa tataggcttg aaaaaatgca
     1141 agataaaata gctaatccga ccaattttga tcagtattta ttggcaatat ttgcagagga
     1201 tgagtacagc ataaaagata acttaagatt gacttttgga gcaagataca atcatcatga
     1261 aatttttgga aataatattt cgccaagagc ttatctggtt tataatccta ctgatgaact
     1321 tactttaaaa ggcggtgtat ctacgggttt taggactcct tatgcaaatc gtttgataaa
     1381 tggagcttat aattatagtg gtcaaggtag attccctata tatggaaatc ctgatttaaa
     1441 agaagagaca tctttaaatt atgaaatagc agctatttac aataatgatt tgttttatgt
     1501 ttctgcgaca ggttttttaa caaattttaa agataaaatt tcaacccaaa gatataataa
     1561 agacgatatg attccaggaa ttggtacttg cgatgctgat agatgtttta aggcaatcaa
     1621 ccatggcaag gttgaatata aaggtataga gcttggagca gggataagcc ctcttgataa
     1681 tttaaatgta aattttgctt tatacttatc ttgatactga agttaaagaa gcacaagata
     1741 gaagtgtgat aggtaaacct gaacaagata gtttaaaaca caatatcatg ttaaaaaccg
     1801 aatacagctt ctataataaa ttcactcctt ggataaaagg cgagtggcaa atagatcgct
     1861 atatgggtga tactaatatc aatagagaat attacaagga tatcttttta gcttccatgg
     1921 gtgtgcgtta tgatatcaac aaacaatgga gtatcaatgc agctatttat aatctttttg
     1981 acaaaagctt tacaaatggc tgggaatctt atgcaagtgg gagtggtagc acttgggtaa
     2041 atacctataa ccgcatagaa gaaggaagaa gaatgtatat ttctatcaat ggtaactttt
     2101 aagctttgat agaagaacca aagagctttc aaaggcttct ttggtttttt attttaatat
     2161 cttatacctt taaaaaacta gacaatcaat tcaatttaaa attttcatct tatttttatc
     2221 attgcatttt caatcttaaa agatagctta tccttataaa aaagtaacta ataaaacttt
     2281 agtcatattg actaaataaa attaagtata tttttttata tttatacttg acaaaataac
     2341 actcaatgtt gtataatata tctagcaatc aaaaaataga gtgctagata tgaaggaaaa
     2401 tatgatgaaa agccgagata aaaaggattt gattttagag tctattatcc aaacttatct
     2461 tttggataat gcacctattg gttctaatga gttaaattca aacctttgca tacctgcttc
     2521 gactatacgc gtttatctta aaagacttag cgatgagggt ttgatcactc agcttcatat
     2581 aagtagtggt agaattccta ctattttaac gatgcaaaat tattggcaaa gtttttggga
     2641 aaaagaacaa gataaaaata tccatatcaa aaacgaaagc tttttgaaag agttaagtaa
     2701 agaatttgaa atttattgtc ttgtttatgg aggtagaagt ttagtactta aagaagtact
     2761 agatcttaat actaaattta tagtgcttga ttttgaagat gaagagctgg ttttaaaata
     2821 cgaaaaagaa gcgtggaatt ttttacaaag tcttataggg cttgatcttt ctagtataga
     2881 aaaaatagct ttgagagttc attttataga tcttgtagaa aaaatagcta gcttaagaca
     2941 aaatttgatt tgctatagaa gcaatgaaga aagagcttat caaatttatc aaaatgatga
     3001 atttgttaag ctcttagatt gtcaaattca ccgtcatttt aaagaaagtc ttgaatttga
     3061 acctttattt aaagaaggtt ttatggggct taaggtggat gcgcagtttt tgggcgaaga
     3121 tgtaaatatt atcttagcag gtagtgttta tacggattat aaaaaaatat tacaatatat
     3181 aaaggaggcg gcgtgagcga gcaaaagcaa gaatttgaaa acgaaaacgc agaaaattct
     3241 gaacatttgc aagatgagaa tttgcaaaat atcgaagatg ttgagcaaaa caaattgcaa
     3301 aaagactatg atgaattaaa agacaaatat atgcgtgcaa acgctgaatt tgaaaatatt
     3361 aaaaaaagaa tggaaaaaga aaagctaagt gctatggctt atgcaaatga aagctttgca
     3421 aaggatttgc ttgatgtttt agatgcttta gaagcagctg ttaatgtcga atgccaagat
     3481 gaaattagct taaaaatcaa agaaggagtg caaaatactt tagatttatt tcttaagaaa
     3541 cttgaaaaac atggagtggc tcttatcaaa gatgaaaaag agtttgatcc taatttacac
     3601 gaagcaatgt ttcatgtaga tagtgaaaac catcaaagtg gtgaagtggt taccgtgctt
     3661 caaaaaggtt ataaaatagc cgatcgcgtg atccgcccaa ccaaagttag tgtagcaaaa
     3721 taaattttaa taaaaggata aaaaatgagt aaagttatag gtatagattt aggaacaacc
     3781 aattcttgtg ttgctgtgta tgaacgcggc gagagcaaag taatcccaaa caaagaagga
     3841 aaaaacacaa ctccttcagt ggtagctttt acagataaag gcgaagtttt agtaggcgat
     3901 agtgcaaaac gccaagcggt aaccaaccct gaaaaaacca tttattctat caaaagaatt
     3961 atgggtttaa tgatcaatga agatgcggct aaagaagcta aaaatagact tccttaccac
     4021 atcactgaaa gaaatggtgc ttgtgctatt gaaattgcag ggaaaattta tactccgcaa
     4081 gaaatttcag cgaaagtttt aatgaaacta aaagaagatg ctgaagcttt tttgggcgag
     4141 agtgttgtag atgcggttat tactgtgcct gcgtatttta acgatgcaca aagaaaagca
     4201 acaaaagaag caggaactat cgcaggactt aatgtattaa gaattatcaa tgagcctact
     4261 tcagcagctc tagcttacgg acttgataaa aaagatagtg aaaaaattgt ggtttatgat
     4321 ctaggtgggg gaacttttga tgttaccgta cttgaaacgg gcgataatgt agtagaagtt
     4381 ttagcaacag gtggtaacgc tttcttaggt ggtgatgatt ttgataataa acttatcgat
     4441 tttctagcaa gtgaatttaa agatgaaaca ggcatagatc ttaaaaatga tgttatggct
     4501 ttgcaacgct tgaaagaagc agcagaaaat gctaaaaaag aattaagctc agctaatgaa
     4561 actgaaatta atttaccatt tatcacagct gatgcgagtg gcccaaaaca cttggttaaa
     4621 aaacttacta gagctaaatt tgaaggtatg attgattctt tagtggctga aaccatcact
     4681 aaaatcaatg aagtagtaag cgatgcaggg cttaaaaaag atgagatcaa agaaatcgtt
     4741 atggtagggg gctctactcg tgttccttta gtgcaagaag aagtgaaaaa agcctttaat
     4801 aaagatctta ataagtctgt aaatcctgat gaagttgtgg ctatcggtgc ggcgattcaa
     4861 ggtgcggtta taaaaggtga tgtaaaagat gtgcttttac ttgatgttac accgctctct
     4921 ttgggtatag aaactctagg cggggtaatg actaagatta tcgaaaaagg tacaactatt
     4981 ccaactaaaa aagagcaagt tttctcaacc gctgaagata atcaaagtgc tgtaactatc
     5041 aatgttttac aaggggaaag agaatttagt cgtgataata aatctttagg aaattttaat
     5101 cttgaaggaa ttccaccagc accacgcggt atgccacaaa tcgaagttac ttttgatatc
     5161 gatgcaaatg gtattttaac tgttagtgca aaagataaag caacaggtaa ggctcaagag
     5221 atcaaaatca caggttcgag cggacttagc gaagaagaaa ttaacaacat ggtaaaagat
     5281 gctgaacttc acaaagaaga agataaaaaa cgcaaagaag ctgtagatgc tagaaatgca
     5341 gctgatagct tggctcatca agtagaaaaa tctttaagtg agttgggtga aaaagttgcc
     5401 gctgctgata aagaaaatat ccaaaaggct cttgatgatt tgcgtgagac cttgaaaaat
     5461 caaaatgcaa gcaaagaaga gattgaaggt aaaatgaaag ctttaagtga agtttctcat
     5521 aagttagctg aaaatatgta taaaaaagat gagccaaaca cagcaaatga taaaaagaaa
     5581 aaagatgacg atgtaatcga cgctgaagtt gagtaatctt ctaaaatctt cattcaagcc
     5641 ttgttaaaag gcttgaactc aattctattt tatcttattt aatttttaaa aattttttag
     5701 tagtgatttt atataatata ttattaataa aaatataagg aacacattat ggaacaaagc
     5761 caattccagc ccattgtcaa ctttatatgg agtgtggcag atgatttgct tcgtgatgtt
     5821 tatgtaaagg gcaaataccg cgatgttatc ttacccatga caatcataag aagagttgat
     5881 gcggttttag agcctacaaa agataaagtt cttaaaacct acaataccta taaagatgaa
     5941 tttgaaaatt tagaatcttt gctaggtgga aaacaaggga ataaactagg cttttttaat
     6001 tattctcgat ttaatctaca aacccttcta aacgatccaa aaaacataag aataaatttt
     6061 gaaaattatc ttgattgttt tagtgaaaat atcaaagata tcattttaaa atttaaattc
     6121 aaaaaccaac tcgataccct agaagaatcc aatatacttt ttggtgttat agaaagattt
     6181 tgctcgccta aggtaaattt cggtatagaa gatattttag atgaaaaagg taatgttatc
     6241 cataaaggct tgagtaatct tggcatgggg tatgtttttg aagagcttat ccgtaaattt
     6301 aacgaagaaa ataatgaaga agccggagag cactttaccc caagagagat tatagagctt
     6361 atgactcatc ttgtattttt gcctgtaaaa gagcagatca aacaaggaac atggcttatt
     6421 tatgataatg cttgtggaag tggtggtatg ctaacagaat caaaagaatt catcacagat
     6481 cctgaaggac ttatacagtc aaaggcaaat atttatcttt acggacaaga aatcaaccct
     6541 gaaacttatg ctatatgcaa agcagatatg ctgataaaag gcgaaaatcc agagcgcata
     6601 aaatttggtt ctaccttaag caatgatcaa caaaacttac aatttgattt catgcttagc
     6661 aatccacctt atggtaagtc ttgggaaaat gatcaaaaaa ttctaggcgt ggaaaagaaa
     6721 ggttcaaatt caacttgtaa tgatccaaga tttagtgtag gcattacaag caaaagcgat
     6781 ggacaaatga tgtttttgct taatatgctt agcaagatga aatttgacac ccctttgggt
     6841 tctcgtatcg caagcgtgca taatggaagc tcacttttta actcagatag cggtatggta
     6901 gctataagaa agcatatcat agaaaacgac tatcttgaag ctatagtcgc cctacctact
     6961 aatatgtttt ataatacagg aattcccact tttatatgga tcatcaccaa caaaaagtca
     7021 gaacacaaaa aaggcaaagt ccagcttata aacactacaa atgaagaata tttttcaaaa
     7081 atgaaaaagt ctttaggctc taaacaaaat gaaatgacta aagaacatat agaaaaaatc
     7141 actaaattat ttttagaaaa tgcaagtaat aaagattgca agattttgga taatgaagac
     7201 tttggctata ctaaaatcat catagaaaaa ccaaaaagca tagaagcttt aaaagatgat
     7261 gaaaaatttg caaaactaaa agacaaagat aaaatcttag aaaaattaca agaattagaa
     7321 caaaatccac aagactttaa aaacagagaa gaatttatca aatttttagg cgtaaagctc
     7381 aaaaaaagcg aagaaaatct catcattgat agcgataaaa ctaacaatac tgaaaaaatt
     7441 ccactcaaaa caaatataca aggctattat gacacagaag taaagcctta tgtagcaaac
     7501 tcttggatag cgtgggagag tgcaagtgtg ggctatgaaa tactttttag caaatatttt
     7561 tatacctaca caccaccaag aaagctagaa gagataaata acgaattaga aaagctagaa
     7621 aaagaagtgc aagatctttt aagagagatt gtgcaatgaa aaatttcaaa gagagtggca
     7681 tagaatggct tggggaaatt ccggagcatt gggaagtggt gaaaatcaac aagatagtaa
     7741 cttttgtaaa tggatatgct tttgaaaact ttgattttaa tccaattttt gaaattcctg
     7801 tgattcgtat cggagatatg caaaaggaaa aaattttata tgacaattgc ctaaaaacaa
     7861 aagaaaaaga aaaattgaaa caatttttaa ttagtaataa tgatatttta attgctttaa
     7921 gtggagcaac cacaggaaaa atagcatttt gtgatactga taataaagct tatatcaatc
     7981 aaagagttgc cattgttaga agtaaattaa aacttgtaaa atattatttt ttaactagag
     8041 gattttcatt acttattgag cttgcttgta atggatctgc acaaccaaat atttcaacca
     8101 aagaaatagg ggaatttaaa attccacttc caccactaaa agagcaagag caaattgcaa
     8161 attttttaga tgaaaaatgc aaaaaaatag caaatttcat agagaaaaaa gaaaaactca
     8221 tcacactttt aaaagaacaa aaacaagccc tgataaatga aactatcaca aaaggacttg
     8281 ataaaaatat aaatttcaaa gatagtggca tagaatggct tggagaaatt ccacaacatt
     8341 ggaggattgt gaaacttaaa tatgtagctt ttacaaacat aggattggtt tatactccag
     8401 atgatattat tgaaaatcct gatgaaggat atccagtttt gcgtgccaat aatattcaaa
     8461 atggaaaaat agattatcaa gatttaattt atataaagtc taaacaaatt ggaaaaaaac
     8521 aaattatctc cagtggagat ttattaatgt gcgtcagaaa tggtagtgaa aatcttttag
     8581 gaaaaacagc aaaaattcaa gatggatatt tttcttttgg agcttttaca gcaattatca
     8641 aaagtcaatt taatgattat ttttattgga tttttcaaac aaatatgtta agaaaatcta
     8701 ttgctagttt ttctgcttca aatggaattg ggcaaatttc acaagacgat attaaaaatt
     8761 ttattatatc ttttccaccc ctaaaagaac aagagcaaat cgcacaattt ttagattctg
     8821 aaatttctaa aatagataaa attatagaaa aaaccaaaaa acaaataaaa ctcataaaag
     8881 aatacaaaac cacactcata aaccaagcgg tttgtggtag gattgattta taaaaggaga
     8941 aatatggaag aaaataattt agaatatata aaacaaaatt ttcaaattca ttattatttt
     9001 gatgataact ctcattcaat gaatgctttt gttcgtaatg ctatggaaaa agatttttta
     9061 aattttatta atgaaatagg aaatatttta gatattaaaa ttaaacttga aagtcaagca
     9121 agagaagaag gtgggctaaa ggaaaatata ataatatgtt taatagggtc cgctttatgt
     9181 tattttgctc cggccgtaaa taatatttta actttttact taacagaaca aaataagtta
     9241 caaaatgcag atttgaaatt aaaagatctt gagcttaagc taaaagaact tgatttgaaa
     9301 ttaaaagaag aagaattaaa aaataaaaaa actcaaaatg aatatattaa
//
LOCUS       DARGBD010000067         9226 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.067, whole genome shotgun sequence.
ACCESSION   DARGBD010000067 DARGBD010000000
VERSION     DARGBD010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9226
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.067"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            47..463
                     /locus_tag="SFZ04_001291"
     CDS             47..463
                     /locus_tag="SFZ04_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG8065559.1"
                     /translation="MKIKFLNIITILSLSLNADIIISADNLPNVSKEFLQHNFKAPIG
                     IVQKDKNSYEVYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKSEFPNTK
                     AREIERKINHYKIKLDNDIKILIDFNGTILYKEFDD"
     gene            complement(472..2088)
                     /locus_tag="SFZ04_001292"
     CDS             complement(472..2088)
                     /locus_tag="SFZ04_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEG8065560.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGIIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNDEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKELNLSEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(2092..3342)
                     /gene="mtaB"
                     /locus_tag="SFZ04_001293"
     CDS             complement(2092..3342)
                     /gene="mtaB"
                     /locus_tag="SFZ04_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEG8065561.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            complement(3339..4910)
                     /locus_tag="SFZ04_001294"
     CDS             complement(3339..4910)
                     /locus_tag="SFZ04_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HEG8065562.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLNLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQKHF
                     EQHHENMYFHARNKD"
     gene            complement(4907..5962)
                     /locus_tag="SFZ04_001295"
     CDS             complement(4907..5962)
                     /locus_tag="SFZ04_001295"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEG8065563.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLK
                     TLSSRELAAGMAEFIKMAAMFDYSILDFIEKIDEKSFLNATCENEIFTQIIAKSIELK
                     SRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(6008..7408)
                     /locus_tag="SFZ04_001296"
     CDS             complement(6008..7408)
                     /locus_tag="SFZ04_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HEG8065564.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNIQERVLDTTLKLIQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISMWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFARNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            7438..8559
                     /gene="tgt"
                     /locus_tag="SFZ04_001297"
     CDS             7438..8559
                     /gene="tgt"
                     /locus_tag="SFZ04_001297"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEG8065565.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAIAYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDSTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            8561..>9226
                     /locus_tag="SFZ04_001298"
     CDS             8561..>9226
                     /locus_tag="SFZ04_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEG8065566.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQDGEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILSKNTKEHLAR
                     VDTLYTLTNAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSL"
BASE COUNT         3230 a         1557 c         1080 g         3359 t
ORIGIN      
        1 acataaattc tttacaattt tactaaaaaa taatttagga aaaatattga aaattaaatt
       61 tttaaatatt attactattt taagtttatc tttaaatgct gatataataa tttctgctga
      121 taatttacca aatgtttcta aagaattttt acaacataat ttcaaagcgc ctatagggat
      181 cgtgcaaaaa gacaaaaatt cctatgaagt ctatcttagc gatggaacag agcttgaatt
      241 tgatatagat ggagcttgga aggaaattga aaataaagcc tttccttttg atctagattt
      301 tttacctcaa aatttagcca atatcatcaa aagcgaattt ccaaatacaa aagctagaga
      361 aattgaaaga aaaatcaacc attataagat taaacttgat aacgatataa aaattcttat
      421 agattttaat ggaactatct tatataaaga atttgatgat taaacatatc atcaaacctg
      481 cattatatct ttaacatcgt catattctat cttttctttt tcaagcaaaa gctctgataa
      541 ttttaaaatt ttatccttca tagaatttaa aaattcatcc atttcttttt tttgttcact
      601 taaatttaac tctttcaaca tatcaaaact caacatataa tcaagcaatt ctttaatctt
      661 taaaaaatca tcttgcgagt tagtataact ttcattgtaa atcaatctca tggctctaga
      721 accagccaaa taaactttta tacgattgat aagctctgat tttgatctta tattatgctc
      781 atattcttta aaacgatctt caatgagagt gattttttca aatcctatgt caaaataata
      841 cgcactcaaa gcttttgcag cttgataagt ggcttgaatt ttcttctctt catcattaaa
      901 acttaaaatc tttttcttac ctaaaagaac tttatttaat acagcataaa aatcgctttc
      961 ctcaactaaa gcactatttc ttcttaaagc attaattgct gcttcattga ccaaagtttc
     1021 aagccctgct ccactaaaac ctacgcttgc tttagcgatt ttatttaaat tgatattatt
     1081 gtttttatct ttcatataaa tttctaaaat tttaagtcta tccttaaaat caggcaaaga
     1141 taaaaaaatt ctcctatcaa aacgccccga acgcaataaa gcaggatcca taagttcgat
     1201 tttatttgtc gcagctataa ctataatccc gctattgtcc tcaaaaccat ccatttgagt
     1261 taaaagttga tttaaagtgc tatctctttc aacatttgac atttctcctc ttgccttacc
     1321 tacggcatct atttcatcaa taaaaactat gctaggcgcc atcattttag cttttgaaaa
     1381 aagctctcta actctttttg cacccatacc tacataaatt tcaacaaaac ttgaaccact
     1441 ttgataaaaa aatggcaccc ctgcttctcc tgcaactgct tttgctatca atgtttttcc
     1501 tacaccaggt gggcctacca ttaaaacacc ttttggcatt tttacaccaa attctttata
     1561 ttttttagga ttttgtaaaa aatccacaag ttcgcttagc tccattttaa cttcatcaac
     1621 acctgctaca tcattaaaag taatatttga aatcacaggt tttatatggg aactttctaa
     1681 atttatattt gaattttgag cttgagtgtg attttgattc ttatttgata ttggatattt
     1741 agccaactct tttttacgag caaaataacc aagacttata aaaagtgcga taataaaaat
     1801 aagtaaaaca aaaaacaccc aaagcgtatt atctttttta acctctacgg gaacttttga
     1861 taaaagtgtt tttatatcta tgccatcttt tataattacg taattttcac cttctgcctt
     1921 aagccaaatt tcgtctttat caatcacagc tttttggatt aaattttggc ttaatagact
     1981 ttgataaaga ttttcatcta tatatttagg ttcattttta aaatataaaa ttcccaaaag
     2041 catacataaa accataaaag atgctaaaat tatcttttta tttttcatta tctagccttt
     2101 taaatttgta aagttagact tttcttgtac ttcatattca gatataacga tccattcttt
     2161 agctatatct ttatcacttt taattttgat cttattaaaa aactgatcat aaccctcaaa
     2221 aaaaccatct ttttgatttt ctaccaaaac ttcaagtgaa acttgatttt ttttcctaaa
     2281 ttcataatta tttttttcta ctatggattt taaagtgttt agcctttctt tagctaaagt
     2341 tccatttatc acatctttca tggtagcaga atgcgtgttg tttctagggc taaaaataaa
     2401 agcatggata tgagtgagtg gaaattcttt aaaatttctt aaagcttctt gccatagctc
     2461 ttcactctcg cctggatgag ctactataaa atccgtccct aaagcatatc ctttgcttgc
     2521 tatagtatta aaaagcttta aatcattatc cgtatgtgat cttcttctca ttatacgaag
     2581 cattttttca cttgtatgtt gcaatgcaat atgtaaatgc ctttcaagcc aagcttcatc
     2641 taagatttct aaaaaacttt catcaagctg tgcaggttct aaactaccta gccttatgcg
     2701 ttttatacct aaaatttgtc ccattttttg caaaagcttg cctagggttg tgccattttt
     2761 aagcccatat gaacctatat tagtccctgt taaaacaatt tcactataac cattagctcc
     2821 caaaatttca acctgtttta aaagagcttt ttcatccaca cttcttgatt ttcccctcac
     2881 gctaggaata atacaataag aacaagcaaa atcacaacct tcttgaattt tcacaaaagc
     2941 tttggtatga ttttcatact cacaaactat atctttatca ataaaattta aatttccaag
     3001 ttcataaaaa cttgtctttg ctcctaaaaa ttcattgatt ttatctttat ttgacgctcc
     3061 aagcactcca aaaacttgct ttttatctaa aagctcctta cctttgctta cagcaccaca
     3121 acctgtaagt ataactttaa tgcctttttt ttgcatggta tttacataag actttatccc
     3181 gctatcagct ccatttgtaa ccgtgcaaga atttacaacg ataatttgtg ctttattctc
     3241 atcatttata atctcataat cttttacata actttttaaa agctctgtat cataaatatt
     3301 tgtgcgacac ccaaaggttt taaaaaaaac tttttctttc aatccttatt ccttgcatga
     3361 aaatacatat tttcatgatg ttgttcaaaa tgtttttgat ttaaatttcc taaatataaa
     3421 ttttgcgatg gataagcaat ttttatatct ttatgcttat taaattcttt tataatctct
     3481 ttgctaatcg tacttcttaa taccaaagcc gcataagcat tagtcatata ccatgcagaa
     3541 attctcattc cccaatgttc aaaaaacata aaaaaccttg gctccacttt aggattttta
     3601 atactatatt catgttgtaa acgagctata ttttttctag caagctcagt ataacctttg
     3661 gcatggcgtg taacaatatt ttccacaatt tcttgagctt tgtcaagatt gctatcaaaa
     3721 gtaacactta tatcaatgcc atcaagcacg gttttcatac catgatgggt ataattagca
     3781 agcaaatttg taaaaacata gttattagga ataaatataa tacgcccact acgacgattt
     3841 ttattataag tttcaagcgt aagctcttca taaagagtaa tgcgtaaaaa agaaatgtct
     3901 ataatatctc ctatataggt agtatcattt tgaaaaactt ttacacgatc ccctactcta
     3961 aaacttccgc caaaaataat cacacaccat ccaagcatag acataaacat atctttcata
     4021 gcaatagcta agcccgcaga ggcaaaacca agtatagtta caagataagt aatattttct
     4081 atataagcaa agagcaaaat aagaaaaata atatttatat taataaaatt aataatcttc
     4141 gtagcagtat aatatctttc actatcctta atatattttt tagcaataaa tttcaacata
     4201 aaagctatag ctataacaat aacaatagca acaagtatat ttacagccct taagctttga
     4261 actttaatct cagcacttac tcgagaaagc tcttcatcaa tttttttctc ataaacagaa
     4321 taagaaacac tagcaaaatt taaagcttgc tcaaattctt ccagcttttt atccgaagct
     4381 tttaaagctt ctatattctc aacacttggt ttaagctcaa ctaattcctt aagttctgag
     4441 tttttttccc tgattttatc tactaaattt ttaaaatcat taaatttaaa tatatactct
     4501 tccttttctc cttttaattt cttaatatga gaaaaagctc ctataatagc caaaggatta
     4561 gtaagcttag ataaagtttc tatattatca ggggcactaa gactttgtgc aaaatttaaa
     4621 tctttatatt ctttaagcaa gttcaattgc tcttctaaat ttgctatctt gcgtttaagt
     4681 tcttcttgtt ggtgaatatc ggaagtcttt tttaaattaa gatttaaaat gattaattca
     4741 tcatttatat cttgatattt tataaaattt tcataacgta tattccaaat actagcactg
     4801 attacagtat ttaaagtatt aattttctca tttatattat taataatagt ccgatttaca
     4861 tcaccaaaag caaaaacaac aaaaaaggtt aaaataataa tttttttcat tggaattctc
     4921 ttaaagttgc aattatatct tctttagaaa tatcaccttt tatcaaaccc ttacccaaag
     4981 gactagcaag aacaaaattg atttttttat tagagctttt tttatccatg aaaaaagctt
     5041 cataaaattc atctacattg ttgattttat atgatattgg caaaccgaat ttaagtaaaa
     5101 tatcttttat tctttgactt tgcattttat ccaaaagccc taaatttaaa gccaattgat
     5161 ttgccataac catacctata gccaccgctt ctccgtgtaa ataaagctta taatctgtaa
     5221 aattttctat aacatgagca aaagtatgac cataatttaa aagcattcta agccttgatt
     5281 ctttttcatc ttgttcaaca acccttgatt taagctctat gctttttgct ataatctgag
     5341 taaaaatttc attctcacaa gtagcattta agaaactttt ttcatcaatt ttttctataa
     5401 aatcaagtat actataatca aacattgctg ccattttaat aaattcagcc atgcctgcag
     5461 caagttctct agagctcaaa gtctttaaaa aaaaactctc acaatataca gctttaggtt
     5521 gataaaaagt gccaataaga tttttaccaa aattattatt aacacctgtt tttccaccta
     5581 ctgctgcatc aacacaagct aaaagtgtag taggaatatt tataaaatca atacctcttt
     5641 gataaatact agcagcaaat ccgcccatat cactaatcac gccaccacca aaacttataa
     5701 gtacgctttt tctatccaat ttagaattaa acatttggtt taaaatttct tccatggtgc
     5761 ttaaattttt atattcttca ccatctttca cagtagcaat aaaaatttct tttgccttaa
     5821 ttttagaaag taatgttttc aaatgaagac ctgaaatctt aggatttgaa agtataaaaa
     5881 ccttactatc aaattctaat tcttcaagtt catcaatata aaccttataa gcattttctt
     5941 ttaacttaac ttctacttgc attgaactac tctttttgca tttattttat cacatttaat
     6001 taattattta ttctactggt atgaaaagtt ggtaattttg tctcattttg taataatgcc
     6061 tatttaaatt tgtacttaaa tttctggcaa aatctctatt tagtaattct ttttgaaaac
     6121 tcacaaattg taacaaatct tcgcgatatt gcaaatttaa aagagggttt tcatcatttt
     6181 tattaataat ttgtatattt ttatcataaa gcttagataa acttctaaaa tactcctcca
     6241 tatctgtagt attttgagaa tttggattat aataatataa aataactcca aaatcaagct
     6301 gtttacttaa atcagtaatg acatttgcat tgttttcaag ttcactctca tcagcactta
     6361 aaataatcgc ttctttaagc tcatcaaaag aagcttcacc caccttcata ataggaattt
     6421 ttaaatcaaa aaaagcttgt ttttctttct caaaattttt tatatcggtt acaactaatc
     6481 ctatatcatt attttgcaac cacatggaaa tttgtttaaa atccgtgttg aaataatcaa
     6541 aaaacacacc ttctttatcc tcagaaagtt tttttaattt ttcatacatt acccctaatt
     6601 taggattgat aacatgtata aaaaatcttt ttgcattgct tttttgaatt aattttaaag
     6661 tagtatcaag cactctttct tgtatatttt gattcatatt tttcatatca attaaagcaa
     6721 aaacattact tccaaaaggc ataggaaatt gccctgcttt gcctcttata ttatgaaaaa
     6781 tactttgtaa aacaacagga tccccaacga tcaaaatgct atcatttggc tctagaacaa
     6841 aagatggttt tacaaaataa attttagaat ttctataaat aaggactatg cgccaccttt
     6901 tttgttgtat tgaacttatg tgcctataag caaaaataga ccctgctgga atttttactt
     6961 ccataatctc cccaactcca agtcctatat actgagctgt taaagcaata tctggtaaaa
     7021 aatccataaa tctacggctt aaagtcattc tagcatcagc taaatttgca tgagtatcat
     7081 taacacttaa cccccaaaaa tccattattt ctatttctaa atttggattt aaagaacgca
     7141 aagcctcata acttttttta gtttcaaatt catcttgcat ataaataaaa gcctgtttaa
     7201 aatccttact cataatattt tcaagacgcg ctgtgcttgt aggatcaaaa taatgcaagt
     7261 caatatactc actagaaata tttaagttat ttttttcact attttgacac actactgtaa
     7321 aaaagtaacc taagcctttt tcaaaacaaa gcctttctaa gaaatgcttt gctaaaatac
     7381 catctattat aattaaaata ttattcattt taaactccaa aaaggaaatt ataacaaatg
     7441 gaatttaaat taaagcataa agatggaatg gcaagggttt gtgaaatcac taccgcacac
     7501 agcacttttt taacccctgt ttttatgcct gttggcacag taggagcggt taaaagtctt
     7561 gatgctaatg atatgaaaaa tgagcttgat gcaaaaatta ttttagcaaa tacctatcac
     7621 atgtacttgc gtccaacttc caaagtagta aaagattttg gaggtttaca tggatttacg
     7681 aaatttgata gaagtttttt aaccgatagt ggtggttttc aagctttttc tttaagtaaa
     7741 aattccaaac attttaatga aggtatagaa tttaaaagtc acattgatgg aagtcgtcat
     7801 ctttttactc caaaaagtgt tttagatacc caatatgatt ttaactctga tattatgatg
     7861 attttagatg atttagtagc cctacctgca accaaagaaa gggttaaaat ttctgttgat
     7921 cgcactatac tttgggcaaa agaagctatt gcttatcata aaaatatgca aaataaaggt
     7981 ataggtatag ggcaaaatat ttttggtatt atccaaggtg gcacagatta tgaagaaaga
     8041 aagcgttgtg ctttaagttt aaacgaaatg ccatttgatg gtttagctat aggtgggctt
     8101 agcgtgggcg aagaaaacgc cttgatgtac gaaacagtcc aaaacttaaa cccttatcta
     8161 gatgaaaatc gtccaagata tttaatgggc gtaggaacgc ctgaagattt agtagaaaat
     8221 gttgagcgag gagtagatat gtttgactgt gtgatgccaa ctagaaatgc aagaaatgga
     8281 acatttttca caagttttgg aaaatttaat atcaaaaaag cagaatttat caacgatcat
     8341 gaagttatag attctacttg ctcatgttat acttgtcgta atttttcaag gggttattta
     8401 aaccatcttt ttaaagctaa agaacttact ttttttcgtt tggcaagtct gcacaatcta
     8461 cattattatc ttgaacttgc aagaaagatg cgtgaagcaa ttttgaacaa ttcttttacg
     8521 caatttaaaa gaaattttta tcacttaaga ggcaaataaa atgctagaac tacacgaaaa
     8581 tctaaaaaaa atcctacaag caaagaattt agaaactttt tatagtgaaa tttatggaca
     8641 aaaaattttt gtttatgtgg gattaaattt ggaaacttgg ctttttaacg atgaaaaaat
     8701 ttataaactt caagatggag aatttaagct ttctagcata gaagaatttt caaattttat
     8761 taaatccatt ttagaagatt ttaaagtaca aaatactcat tttcaaaacc ttttagaaca
     8821 caaagaaggt attatcttaa aaggtggttt tgttaaaaat ttttacaaaa aatcctttgt
     8881 gttaagacaa aaaatcaaca aaaatctaaa gcaaattaat cttctaagcg aagctttcaa
     8941 tcttttgctt agtgaacaag cacaatataa aaaacattta aaaattttaa atttatccat
     9001 cagcatctta agtaaaaaca ccaaagaaca tctagcaaga gttgatactc tttatacatt
     9061 aacaaatgca attaaaaatg aaaaaatgaa taaaagtatt tatcttttaa gtatactttc
     9121 ttctattttc ttgcctttaa atttgatcgt aggatttttt ggaatgaata ctaataatct
     9181 ttttttcaaa gatagccctt atggtacact ttatattttt tctttg
//
LOCUS       DARGBD010000068         9186 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.068, whole genome shotgun sequence.
ACCESSION   DARGBD010000068 DARGBD010000000
VERSION     DARGBD010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9186
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.068"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            9..290
                     /locus_tag="SFZ04_001299"
                     /pseudo
     CDS             9..290
                     /locus_tag="SFZ04_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782082.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            426..1256
                     /locus_tag="SFZ04_001300"
                     /pseudo
     CDS             426..1256
                     /locus_tag="SFZ04_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009881991.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1520..2272
                     /gene="peb3"
                     /locus_tag="SFZ04_001301"
     CDS             1520..2272
                     /gene="peb3"
                     /locus_tag="SFZ04_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HEG8065567.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVTFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            2369..3463
                     /locus_tag="SFZ04_001302"
     CDS             2369..3463
                     /locus_tag="SFZ04_001302"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEG8065568.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELVNLTLSQTMDTVLCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            3475..3960
                     /gene="greA"
                     /locus_tag="SFZ04_001303"
     CDS             3475..3960
                     /gene="greA"
                     /locus_tag="SFZ04_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEG8065569.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            4111..4728
                     /locus_tag="SFZ04_001304"
     CDS             4111..4728
                     /locus_tag="SFZ04_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEG8065570.1"
                     /translation="MLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFF
                     KRVKIFNLQEQPIKLNLHTSKGNNLVLNNAFIKLAHGDIFLPPLLQFTLKTLRNHYLL
                     VFLNFLNIITRNFISNKILQNQNKKNLFYQIKDFENLAKKRYEKYENLGFWVCEGHYH
                     QNHQINKENIKYLNLASFAYKRSFFVVEYQQEIKFREQKLRGQNV"
     gene            4721..5677
                     /locus_tag="SFZ04_001305"
     CDS             4721..5677
                     /locus_tag="SFZ04_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEG8065571.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQIYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            5681..7990
                     /locus_tag="SFZ04_001306"
     CDS             5681..7990
                     /locus_tag="SFZ04_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG8065572.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSTPQAELEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            7995..8516
                     /locus_tag="SFZ04_001307"
     CDS             7995..8516
                     /locus_tag="SFZ04_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HEG8065573.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            8516..9139
                     /gene="serB"
                     /locus_tag="SFZ04_001308"
     CDS             8516..9139
                     /gene="serB"
                     /locus_tag="SFZ04_001308"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEG8065574.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
BASE COUNT         3277 a         1270 c         1745 g         2894 t
ORIGIN      
        1 gtttaaatat gtttgatttt ttcaaaccta aggcaaaagc tattaaattt cctctttagg
       61 aaattttacc tagatattac aaaatgagaa cttggagttt aagtggggtt tttataggat
      121 atatgggata ttatcttgtg cgaaataata tcactctttc aactccattt atacaaaatc
      181 aacttaatct cagtaaatca gacatcggaa caatcacagg ctcaatgctt atagcttacg
      241 ggattagcaa gggtgcaatg agcgttataa gcgacaaagc tggtcctaaa aaatacatgg
      301 ctttaggtct tattttatgt gctcttgtaa atgttttact tggtttttca aattcttttt
      361 acgcttatgt aggttttgtt atcgcgcttg gggtttttca aggtatgggg gtaggtcctt
      421 cttttatcac tcttgcaaac tggtatccta aaaaagagcg gggaatttac acggccgttt
      481 ggaatatctc acataatata ggaggcggga tagttgctcc tatagtttcg ctttcaggtt
      541 ttgctttagc agcattattg ggtgtgagta tggcaaattt taacgaaaca tattggcaca
      601 tgaatcattt ttatactcct gctgcttgtg cagttatcat tagtctttat gcgctttatg
      661 cagttaaagg aaatcctaaa aatgaaggtt tggttgatat tactgaaatc aatgaaatgc
      721 gagggattaa aacagaagaa atcaaagcta tagaaactcc aaatttaagc agttttgaaa
      781 ttttttatca ttatgtactt aaaaacaaaa atgcttggca tgtggcttga atggatactt
      841 ttgtttatat ggtgcgtttt gggcttattt cttggcttcc tatttacttg ctagaaacaa
      901 aaggctttaa taaagaacaa ataggtattg ccttttggct ttttgaatgg gctgctatac
      961 cttctacttt acttgcagga tatatttcag ataaaatttt taaaggctat agaatgcctc
     1021 ctgctatagg cgccatggtg attattttct ttatgattat tggatatttt acttcaaata
     1081 atctttatat ggttattttc tttgcagcta tggcggggtg tttagtctat ataccacaat
     1141 ttttagcaag tatgcaaact atggaagtcg ttcctgcttt tgcagtagga tcttgtgtag
     1201 gacttcatgg ctttatgagt tatgtagtcg gcgcttcact tggaacaaaa gcataggttg
     1261 ggctgtggat tactatggta gttggaatgc tggtcttatc atgctcctta gtgcttgtat
     1321 tctttgtata ctttgttcta ctttatgtca ttttagcgct aaaaagaagc atcaataaca
     1381 attttaactt ttgcttgcaa aaataccaag caaaagttag attttaataa tatttttgtt
     1441 acattataac tatttattaa catataattt ctaaaatctt accttcaatc aataaaaatt
     1501 tatcataaaa ggaaatacta tgaaaaaaat tattacttta tttggtgcat gtgccttagc
     1561 ttttagtatg gcaaatgcag atgtaaacct ttacggacca ggtggcccac acacggcctt
     1621 aaaagatata gcaaacaaat atagcgaaaa aacaggcgtt aaagtaaatg taaattttgg
     1681 ccctcaagcg acttggtttg aaaaggctaa aaaagatgca gatattttat ttggcgcttc
     1741 agatcaatcg gctttagcta tagcgagtga ttttggaaaa gattttaatg tgagtaaaat
     1801 caagccttta tattttagag aagccatcat acttactcaa aaaggcaatc ctttaaaaat
     1861 caaaggttta aaagatttgg ctaataaaaa agtaagaatc gttgtgcctg aaggtgctgg
     1921 aaagagcaat acttctggaa ctggagtttg ggaagacatg ataggtagaa ctcaagatat
     1981 aaaaaccata caaaatttta gaaacaatat cgtgaccttt gttccaaata gtggaagtgc
     2041 aagaaagctt ttcgcacaag atcaagccga tgcttggatc acttggattg actggtcaaa
     2101 aagcaatcct gatataggaa ctgccgtagc tatagaaaaa gatttggttg tttatagaac
     2161 ttttaatgtg gtagctaaag aaggtgcgag caaagaaaca caagatttta ttgcttattt
     2221 aagttctaag gaagctaaag aaatttttaa aaaatacggc tggagagaat aaaccttcat
     2281 acacgctttt tagcgtgtat tcttgcataa cttcttttaa ttaagtcaaa ataagataaa
     2341 atgtttaaaa tattgataag gaaatttttt gaaaaccttt ttagtttgtg ctttagagcc
     2401 ttcagcaaat ttgcatttaa aagaagtttt aaaagcttat aaaaaagatt ttggtgaatt
     2461 tgaacttcat gggatttatg atgagagttt atgcaaagaa tttgatttaa attctaaacc
     2521 actttatagc tcacatgaat ttagtgctat gggttttata gaagttttac ctttgatttt
     2581 caaagcaaaa aaagcgatca aagaattagt gaatctaact ttaagccaaa caatggacac
     2641 agttttatgt atcgattctc ccgcttttaa tatccctttt gccaaggctt taaaaaaagc
     2701 aggcagtaaa attccacgca tttattatat cttgcctcaa gtttgggcgt ggaaaaaagg
     2761 tcgcatacct atcatagaaa gtcattttga tattttagct tctattttgc cctttgataa
     2821 tcaatttttt aacaaaagca cctatatagg ccatccgctt ttagatgaga taaaagaatt
     2881 taaaaatcaa gaagatatta atcatacatt ttcaaaaaaa gatgatgaaa aaactatagc
     2941 ctttttacca ggttcaaggc gtagtgaaat taggcgttta atgcctattt ttaaagaact
     3001 ttctcaaaaa tttaagggtg aaaaaattct ttgcgttccc tcatttaatc ttgaaaaatt
     3061 agaagtttat ggtgatatta gcgaatttaa gatagaaagt aacactccaa aagtgcttaa
     3121 aaaagctgat tttgccttta tttgtagtgg aacagctact ttagaagcag ctttagtggg
     3181 aactcctttt gttcttgctt ataaggcaaa ggctatcgat atttttatcg caaaactttt
     3241 tgtaaaatta aaacatatag gacttgcaaa tattttttgt gatttcgctg gaaaagaagc
     3301 tttaaatcct gaatttttac aagataaagt caatgtttta aatttatatg aagcttacaa
     3361 taaatatgat tataaggcat tttttgctaa agttgatttt ttaaaagaat atttacaatt
     3421 tggaagtgct aaaaatttag caaaaatcct aaacgaaata taaaaggata aatcatgcaa
     3481 aaagaaccaa tgagtcaatt tggctatgat aagttagccg cagaattaaa agatttaaaa
     3541 gacaatcaac gccctgccgt tgtaatagaa atcgatacag caagaagtca tggggatttg
     3601 aaagaaaatg ctgaatacca tgctgcaaga gaaaagcaag ctttgataga aagtcgtatt
     3661 gcagagctta gtgacttgct agcaagagct caagtgatcg atccttcaag ttatgagcac
     3721 gatagtgtga aatttggttc aagtgttgtg atcatggatt tggatacaga aaaagaaagc
     3781 aaatatactc tagtaggaat ttgcgaagga aatttagata agggttatat ttccatcgca
     3841 tctccaatag caaaagctat gcttggaaaa aaagaaggag atgattttaa agtgcgtttg
     3901 ccaaaaggtg aaagtgaatt tgaaatcctt tctataaatt atgagccttt gaaattttaa
     3961 ggataaaaaa ttttactaca aaatggagcg attttaatcg cagatgctca tgaaaatgaa
     4021 caaagaaagg gattttggga atttttacaa gccttaaaaa aaggtaaaat ttccacccct
     4081 caactcatac ttatgggtga tattttcgat ttgcttatag gcgaaatctc tgctacacat
     4141 gaatttgcta aaccttacat agaactttta gaagaattgg ccttaaaaat tgaaattatc
     4201 tacttagaag gcaatcatga ttttaatctt tcttgttttt ttaaaagggt aaaaattttt
     4261 aacttacaag agcagcccat aaaacttaat ttgcatacaa gtaaaggtaa taatcttgtt
     4321 ttaaataatg cttttataaa attagctcac ggagatattt ttttaccacc tcttttacaa
     4381 tttactctga aaacattaag aaatcattat ttgcttgtat ttttgaattt tttaaatatt
     4441 attactcgta attttatttc aaataaaatt cttcaaaatc aaaacaaaaa aaaccttttt
     4501 tatcaaataa aagattttga aaatttagcg aaaaaaagat atgaaaaata tgaaaattta
     4561 ggattttggg tatgtgaagg acactatcat caaaatcatc aaatcaacaa agaaaacatt
     4621 aaatatctta acttagctag ttttgcatat aagagaagtt tttttgtagt agaatatcag
     4681 caagaaatca aatttcgaga acagaaattg aggggtcaaa atgtttgatg aaaatatcgt
     4741 gaaaacgggt tcaaatgaaa tggagcttgt cgatttccgt atctttaagc aagggcacga
     4801 taaagtctat gaaggaattt atggtgtaaa tgtttctaag gtaagggaga ttataaaaat
     4861 cccaagcctt acagaacttc caggtgtacc tgattacatc gaaggtatct ttgatcttcg
     4921 tggagtggtt atacctgtag tcaatcttgc caaatggatg caaatcactg agccagaaag
     4981 cactatgcta aaacctagag ttattattac tgaatttagc aatattctta ttggttttat
     5041 agttcacgaa gcaaaaagaa ttcgtagaat aaactggaaa gatatagaac cagcaacttt
     5101 ttctacagga tcaggtgctt tagataaagg taaaattaca ggtgtaacac gcattgaaaa
     5161 tgatgaagtg ttgctaattt tagatcttga aagtgttgtt gaagatttag gaatttacgc
     5221 tccaaaaaca gatatagatt ttggaaaaat agaaaaattt actggaacag cacttatact
     5281 tgatgacagc atgactgcta gaaaacgcgt caaagaaatg atgcaacaga tgggctttca
     5341 agttgttgaa gctaaggacg gcgtagaggg cataaacaaa ttagaagaat taagccaaat
     5401 ttatggtgaa agtttaaacg atactttaaa aattatagta agcgatgtcg aaatgccaca
     5461 aatggatggt ttccactttg ctgcacgcat taaagaagat ccaagattta aagatattcc
     5521 tatagtcttt aactcatctt tatcaaatga atttatgaat gagaaaggtg ttcaagaagc
     5581 tggtggagaa ggctatcttg tcaaatttaa cgctagcgat ttcttcaatg aaattgcaaa
     5641 ggttattaaa aaacatcaat ctcaagaaca ggggtaaaat atggaagata tgcaagaaat
     5701 acttgaagac tttttggttg aagcttttga gcttgttgag caaatcgacc atgatttagt
     5761 agagcttgaa tcaaatccag aagatttaga attattaaat agaattttcc gtgttgcaca
     5821 tacggttaaa ggatcatcaa gcttcttaaa ttttgatgtt ttaacaaagt taactcacca
     5881 catggaggat gttttaaaca aagcaagaca tggcgagtta aaaataactc cagatatcat
     5941 ggatgtggtt ttagagtcta ttgatagaat gaaaacttta cttaattcca ttcgtgataa
     6001 tggcaacgat actgctattg gtatggatat agaaccaatt tgcgcaagat taacagctat
     6061 ttcagaggga gagtctcctg ttgtggcaac agattcaaat gaaaaatcta ctccacaagc
     6121 agaactagaa gcaccaaaac aagaaatagc tactccagaa cctgaagtag atgttaatca
     6181 attaagtgat tctgaagttg aagctgaaat agaaagactt ttaaaagtta gaaaagctga
     6241 agatcaagct cgtcgcgcac aaaagaaaca aacaacaaat gcggcaccta aaccgactaa
     6301 caatacagcg aataaaccta cggaaagtgg agagaaaaaa gttcctgctt caggtagtaa
     6361 tgctagcagt atggatcaaa ccatacgcgt ggaggtaaaa agattagatc acttaatgaa
     6421 tctaattggg gagcttgttt taggcaaaaa ccgtttgctt aaaatttacg atgatgttga
     6481 agagcgttat gaaggagaaa aattccttga agaacttaat caggttgtaa gtcaattaag
     6541 tattattaca actgatgttc agcttgctgt gatgaaaaca agaatgcaac ctatagcaaa
     6601 agttttcaat aaattcccaa gagttgttcg tgatttaagt cgtgaattag gaaagcaaat
     6661 agaacttgaa attacaggtg aagaaactga acttgataaa tctatcgtag aggaaattgg
     6721 cgatcctatc atgcatatga ttagaaattc atgtgatcat ggtgttgagg atccagcaac
     6781 tcgtgcagcg aatggaaaac ctgaaaaagg tatagtccaa cttaaagctt ataatgaggg
     6841 caatcacatc gttgtagaaa ttacagatga cggtaaagga cttgatccaa atggcttaaa
     6901 agcaaaagct atagagaaaa atttgattac cgaaagagaa gcagatcaaa tgacagacaa
     6961 agaagctttt gctttgattt tcaagcctgg tttttcaact gcggctaaag taacaaatgt
     7021 ttcaggtcgt ggcgtaggaa tggatgttgt taaaaccaac atcgaaaaac ttaatggggt
     7081 aattgaaatt gatagtgagt taggtaaagg aagttcattt aaacttaaaa ttcctcttac
     7141 cttggcaatc attcaatctt tacttgtagg aactcaagag gaattctatg caattccact
     7201 tgcaagcgtt cttgaaacag ttagagtgcc aattgatgat atctatacta tcgaaggtaa
     7261 aaatgtatta cgcttaagag atgaagtgct ttctcttgtg agactttcag atgtatttgg
     7321 agttaaacaa gtccttgaaa gcggtgatca aacttatgtc gttgttatag gggtagcaga
     7381 aagcaagctt ggtattatag tagatactct tgtaggacaa gaagaaatag ttattaaatc
     7441 catgggtgat tatttacaaa atatccaagg tatagcagga gctacaatcc gtggtgatgg
     7501 tagggtgaca ttaatcattg atgtaggcgc tatgatggat atggccaaag aaattaaagt
     7561 tgatattaaa gcgcaattag aatcaagtgc gaaaaaacct aaagaacaac caagtgatta
     7621 taaagtctta attgtagatg attctaaaat ggacagaact ttaatgcaaa aagctttaga
     7681 accgctagga gttagtttaa tcgaagcaac aaatggtgtt gaagcattga atattataaa
     7741 atctggcgaa catgatattg atgcaatgct tatagatatc gaaatgccaa gaatggatgg
     7801 atacacctta gctggtgaaa ttagaaagta ttctaaatat cgcaacttac cattgatagc
     7861 agttacttca agaacaagta aaactgaccg tttaagaggt gttgaagtgg gtatgactga
     7921 atatatcact aaaccttatt ctccagaata cttggaaaat gtggttagaa aaaatttgaa
     7981 actaggataa gaatatgagt aatgaaaaat tagagcaaat tttgcaaaaa cagcaaactc
     8041 agatggctgg tcctgatgtc gatcaaagag aagatgatat catccaactt gttggctttg
     8101 tagttggaga tgaggaatat gcgattccaa ttcttaatat acaagaaatc atcaaaccta
     8161 tagaatatac tagagttcct agtgtacctg attatgttct aggggttttt aatatgcgtg
     8221 gtaatgttat gccgctcatt gatctagctc aacgctttca tttaggaagt tctaaaatga
     8281 cacctcaaac aagatatatt gttttaagag gtgagacaaa tggaactgga gttggaggaa
     8341 atgctggttt tgttatagat agattaactg aagcaattaa aattcacaga aacagaatcg
     8401 atccaccacc tgaaacttta gttaaagaca aaggtatgat ttatggtata ggaaaaagag
     8461 atgaaaatat cttaactata ctcaaagtag aagctttgct taagcgcgaa ttttaatgat
     8521 taaactttgt gtttttgact ttgatgctac tttaatggat ggtgaaacca tcgatatttt
     8581 agctacagcg catggcaagg gtaatcaaac aagcgaaatt acccgccatg ctatgactgg
     8641 agaacttgat tttttcgaaa gtcttcaaaa acgagtaagc tttttaaaag gtatgtctta
     8701 taaaaaagtt ttagaattaa gtagcacact tccactaatg cgtggagcac atgaacttat
     8761 ccaatattta aaatctaaaa atatacaaat tgttattttt agcggtggtt ttcatgaagg
     8821 cataaatcct gctatgcaaa aacttggaat taacctcggt tttgcaaatt atctgcatca
     8881 taaaaatgac attttaacag ggctagttgg tggggaaatg atgttttcaa attcaaaagg
     8941 cttaatgcta caacgattaa aaagcttttt aaatttgaaa acagatgaag tgatgtgtgt
     9001 tggcgatggg gcaaatgatt tggcaatgtt taacgaaagt ggattaaaga ttgcattttg
     9061 tgctaaagaa attttacgtt ctcaagctga tatttgcata gatataaaag acttaaaaga
     9121 aataataaag gtaatataat gaaaaatttt tctctttggt gtgattttat agaaaatagt
     9181 ttttta
//
LOCUS       DARGBD010000069         9052 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.069, whole genome shotgun sequence.
ACCESSION   DARGBD010000069 DARGBD010000000
VERSION     DARGBD010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9052
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.069"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1472
                     /gene="cmeF"
                     /locus_tag="SFZ04_001309"
     CDS             <1..1472
                     /gene="cmeF"
                     /locus_tag="SFZ04_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HEG8065575.1"
                     /translation="FIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKS
                     LNLLEKIKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKF
                     QDESLKIKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISD
                     NTNATKDEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFA
                     PEFKKDIEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDL
                     SLGAVQKLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAA
                     LYESFILPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDV
                     ANKKCHEGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAI
                     IFGLISSTLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(1496..2302)
                     /locus_tag="SFZ04_001310"
     CDS             complement(1496..2302)
                     /locus_tag="SFZ04_001310"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG8065576.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(2303..3022)
                     /locus_tag="SFZ04_001311"
     CDS             complement(2303..3022)
                     /locus_tag="SFZ04_001311"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEG8065577.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(3022..3273)
                     /locus_tag="SFZ04_001312"
     CDS             complement(3022..3273)
                     /locus_tag="SFZ04_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065578.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(3277..4722)
                     /locus_tag="SFZ04_001313"
     CDS             complement(3277..4722)
                     /locus_tag="SFZ04_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HEG8065579.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            4862..6025
                     /gene="ftsW"
                     /locus_tag="SFZ04_001314"
     CDS             4862..6025
                     /gene="ftsW"
                     /locus_tag="SFZ04_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEG8065580.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            6022..7050
                     /gene="murG"
                     /locus_tag="SFZ04_001315"
     CDS             6022..7050
                     /gene="murG"
                     /locus_tag="SFZ04_001315"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEG8065581.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCKEIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(7021..8184)
                     /locus_tag="SFZ04_001316"
     CDS             complement(7021..8184)
                     /locus_tag="SFZ04_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HEG8065582.1"
                     /translation="MASFKKIFWINVIIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGGISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIIGIALAIPLLSVFDLAGA
                     MFFWAIFSFVALVVYYPQAKNGRFFRIKKKAHKKINLFINLTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGMLFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALA
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(8192..9043)
                     /locus_tag="SFZ04_001317"
     CDS             complement(8192..9043)
                     /locus_tag="SFZ04_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8065583.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFITGYHPDGVSGGVVMAYNLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
BASE COUNT         3107 a         1503 c         1232 g         3210 t
ORIGIN      
        1 tttttatagg gctttctttt gctttagcca ctcgcatagg gcttgatttt ttacctatgg
       61 aagatgatag tgaaattcaa gttttgcttg aaagcaaaaa ggatttaagt ttagaagcca
      121 tgaaagaaaa aagtttaaat ttgcttgaaa aaatcaaaaa tgatagcaat gtcaaatacg
      181 cttttttact tgtaggctat gatgatgcca aagatgctac aaaggctaaa atttatgtta
      241 aacttaaaaa tttagacgaa agaaatttaa gacaaagtgc catagtaagt ttatatcgtc
      301 aaaaatttca agatgaaagt ttaaaaatca aaattttaga acttccaaag atagagggtg
      361 caggcattga tgatcccgtg caatttttaa tcttaggaga tgatttaaac actctaaaag
      421 aagctgcttc tcaggcaaaa gaaattttag gcactaatgc acgcattgta gatataagtg
      481 ataatactaa tgctacaaaa gatgaagtag ccttacacat caacaaagaa aaagccaaac
      541 ttttagatgt caatcctcaa tatatcgctg gggttttagg gtattctttc tcgcaactta
      601 gcgtaggaag catggataga ggcaattcaa aagatgatat tatcctaagt tttgctccag
      661 aatttaaaaa agacatagaa gctttaaagc gcattagcat taaaaacaac caaggtataa
      721 atttagaact ttcaagcgtg gtggatttta tatacagtaa agatttaaaa actatcaatc
      781 gttacaataa aaaccgctct gtgaaaatca cagctggagt gaatgatctt tccttaggag
      841 cggtgcaaaa acttttacta gataatatgg ataaaatttt aaataacaat ccaagtctta
      901 gctatgcttt ttcaggcttt atcaatcttt taggtgaaac cgtgcaaggt tttgctatgg
      961 cagtagcact tgcttttgtt ttaatttatc ttgttttagc cgcactttat gaaagtttta
     1021 ttctgccttt aatcatcatg ataaccatgc ctttagcctt tggcggagct tctatagggc
     1081 tttttatcac agggcataat ttttcacttt ttgtacttat tgccatcatc ttactttttg
     1141 gtatggtggg gaaaaatgct attttactcg tagatgtagc taataaaaaa tgccatgaag
     1201 gtttagatcc cgataaagct cttttaatcg ctggaaaatc gcgcttaagg gctatattga
     1261 tgacaacttt tgctatgatt tttgctatgc tcccacttgc tctttcaagg ggtgcgggct
     1321 atgaagctaa ttctcctatg gcaatagcca ttatctttgg acttataagt tcgactttgc
     1381 ttaccttact cgtagtacct gcacttttta aattttgttt taaactagat agcaaattaa
     1441 gaaaaattta tgagagagaa aaattaaatt aaccaaaatg attaatttaa tttttttaag
     1501 tattattctt ataaagtgct tttaagttat cataggcgat ttgtattttt tcaaactgtt
     1561 ctcttgcgta agctttttct attgcacttt ttccttgatg aaaatcagga tgataaagtt
     1621 ttaccaaaat caaatatttt tgtctgattt cactaagatc attttgcgga gtgcattcta
     1681 aagtattaaa ataattacta aaaagcttag ctaaagcatt aaatttccat ttcatatttt
     1741 ctttattgtg aatattttgg cgaaattttt tatactcttc gcggtcaact tcaaaattca
     1801 cgcaatattt taaatgctcg ctctcatctg caaaagcttc aaaaagttca agggtattct
     1861 cgtttttata ttctaaaatt agaatatttg tcatttcatt atattctata ttatgatctt
     1921 gaaaataatt tcttatataa gtaataaata atttttcatt agagcttaac ttcatcaaaa
     1981 ttctacccgc aacaaaatca atcttgataa acaacatagg cttaagcata ttattttgct
     2041 caaaaattaa tctaaaagtt ttaaaatgag catcttgtaa attctctata ccttcatttg
     2101 tgcttttacg atatttttga tctaaaactt ttaagaaata acggcgctgt ggaatttcat
     2161 tttcttcaaa aaaagaaaaa attttatttt ttcgtcctat gacctttgtg aaatttttgg
     2221 taatcaagtc tttaaaatac tgaaatacgc taatatcatc tgtattaaca ttgatagttt
     2281 ctaaagtttg cacgatttgc atctatttct cccataaaac ctcattttca aaaagctctt
     2341 tagtgccttt taaaatttca ttgggtgtat aatcggcttt ataagataaa gattgacact
     2401 tttttacaaa atacccaaga taaatataat ctaagttcat ttttttagct atttgtattt
     2461 cattgagcaa agaaaattta cccaaagaaa aatacgaaaa atcaggatca taaaaacaat
     2521 aaatgcttga aattccatcc tctaaaatat caatcaaatc aacacaaacg agcttatctt
     2581 ctatataaaa tgcaagctca tatccaaaat tcataaaacc atcgacataa agattataat
     2641 actgtttaaa gcttaaatca taacgcttcc agttcttttt ttcttccata aaacgatggt
     2701 atttatcata taaaaacaaa tgttcattgc ttaaattggg tgttctaagt ataactttgg
     2761 tgttaatatt tttatttaca acccttcttt cacttcttga aaaattatat tcattaacta
     2821 aaattctaag acttaaacat tcatcacaat ctttacaaat agggcgtgaa aaatacctac
     2881 caaaacgacg ccaacctcgt tttattagct cattattgat ttctttaggg caattttcaa
     2941 tgtatttata ctctattctt gaacgtttat cctttaagta aggacactga tcttcaagag
     3001 tacaaaaacc aatctcaagc attaaatttt cttaatatct gtatttttga taaattcgga
     3061 aaattcatcc tgtagttttt cttgctttaa gaaaatttct tgcatttcct tatctatgtt
     3121 tgtttcttga tttttttcgc gaatatcttt agctagtttt tctaaatttt ttacacttgc
     3181 accactcttg cttgatttct tcgctaattt tgaagtattg gtgttagctt gcatttcttt
     3241 tttaatactt ttaagactgt ctaaaaaatc catctattat tccctacttt ctcgtatttt
     3301 tttaagcgta gcagctattg cagctataac ttcttcttta ttttcttgat gacgatcttc
     3361 tgttttttct aataattctt gcatatgtgt ttctatgaaa gaggtgtcta aataccccct
     3421 tctaaattct cttgtttttg taatggcaat taaaaatggt attgttgttc taatatcatc
     3481 aatcacaaat tctttcaaag cacgctcaag tttattaacc gctaaatcat aacttgttgc
     3541 tttaataata agctttgcaa gcatggaatc ataataaggc ggcacagtat agtctttata
     3601 aatatgacta tcaaccctaa cagatggtcc aagagctggg tagtattctc ctatttttcc
     3661 aggacttgga ataaaatttt tccatacatt ttcagcagta attctagctt caatagcaaa
     3721 acccctaggt ttaatatcgc tttgttctaa gtccaaaatt tctcctgctg caatacgaat
     3781 ttgtcttaca ataagatcaa tacctgtaat ttcttcagta attggatgct caacttgaat
     3841 tcttgtattc atttccataa aataaaagcg attataatca tcaagcaaaa actctatagt
     3901 tccagcattt gtataaccta cagccttagc agctgccaca gctgtaacac ccatagtttt
     3961 tctaagatta tctgaaattc caggacaagg tgctatctca attacctttt gatgtcttct
     4021 ttgaatagaa caatcccttt cacaaagatg gataatattt ccgtagttat ctcctaaaat
     4081 ttgaaattct atatgtctgg gattaactac atatttttcc ataaatactt catcattatt
     4141 aaagtatgtt aaagcttctc ttttgcaaga ttcaaaggca ttttcaagat cttgttcttt
     4201 atgaacaacg cgaattccgc gtccacctcc accacctgaa gcttttaaaa taacaggata
     4261 accaatcttc tcagcaaaaa ttttaatttc ttccatgcta taggaattta atttttcagt
     4321 ccctggaaca ataggtatgc catttttagc cattaactta cgagcgatat ttttatttcc
     4381 catcttatgg attacttcag attttggacc tataaaaata attccagcat cttcacaagc
     4441 cttagcaaat tcgtaattct cacttaaaaa tccataacca ggatgaatcg catcagcacc
     4501 acaagcctta gcaatctcga caatacgagc aacatctaaa tatcctctta tagcatccgt
     4561 tcctatacga tatgcctcat ctgcgatttt tacatgcaaa cattcacgat caggctctgt
     4621 aaaaactgca acacttttaa tatgtaaatc tctacaagca cggattactc taacagctat
     4681 ttcagctcta tttgctatga gaattttatg gatttgattc ataatttgcc ttttttgtta
     4741 tatttttatt gttaatttta gcaaattttc cttacaaaaa cttagcaaaa aatttaattt
     4801 attttagtta taataaaact ttttaaaatt ttaattccaa taaagaaaag ttataattat
     4861 aatggttgct gataaaagat tattttattt aagttgtatt ttaatcacca taggaatagt
     4921 attttcatac tctcttacag cttttactgt tctttttctt gactatagcg agtttcattt
     4981 ttttattcgt cagctttttt ttggaattag tggcatactt ataatgtttt ttatttctcg
     5041 attggatcct gataaagcac tttctaaaaa aattatttta gctattttga ttatttcttt
     5101 tatctttatc atcattttgc catttttacc ttctgcatta gcaacagcta gcggaggagc
     5161 taaacgctgg atacgcttag gcccactctc tatctctcct gtggaatttt ttaaaatagg
     5221 attgatttat tttttagcat ggagctatac aaggcgtatt gatgatagta aaaaagctat
     5281 cagacacgag gctttaattc ttctgcctta ttgtatctta gcttctatag ttataggata
     5341 tatttatatc actcaaaacg atttaggaca aagtgtaatt tctttctttt tgattctagc
     5401 tttagctttt tttgcaggag ctagtaaaag actttttgct tttggaactt taatcattat
     5461 gatgataggt ataatggtaa tttttagtaa ccaaagaaga attcaaagaa tcgcttcttg
     5521 gtgggggaat atacaagatg cttttttacc tatgcttcct gattggctgg caaatgcttt
     5581 aagagtaagt agcaacagcg agccttatca aatttcacac tctttaaatg ctatagccca
     5641 tggaggaatg tttggcgaag gcctaggact tggaactttt aaattaggct ttttaagtga
     5701 agtgcatact gactttgttc tttcaggaat tactgaagaa ataggactct taggtcttgg
     5761 ggttatttgc tatatttatc tttggatgat tttaagaatt tttagaattg caggaagatg
     5821 tgaagctaaa caagatttta ttttttgttc aggcatagcc ttacttttac ttttttcttt
     5881 ctttatgaat gcttttggta ttatttctct tactccacta aaaggtgtag cggttccact
     5941 tttaagctat ggaggaagtt caatgtgggc aatttgcata ggcataggat atgtattaat
     6001 gatttcaaaa aaggttaaat tatgacaata gctttaacag gtggtggaac tggaggacat
     6061 ttggccatag tgcgttgctt attagaaagt gcgattaaaa aaaatataga atgtgtatac
     6121 ataggtagtc aaaatggtca agataaagct tggtttgaaa atgaagtacg ctttaaggaa
     6181 aaattttttt taagctctaa aggagtggtt aatcaaagca aatttgacaa aatcagttct
     6241 ttactccaca ccttaaaact ctccaaagat tgtaaagaaa tttttaaaaa ataccacatc
     6301 caagccgttt ttagtgtagg tggatacagt gcagctcctg catcttttgc ggctttattc
     6361 tcacatttgc ctctttttat acatgaacaa aattcaaaaa gcggctcttt aaatatgctt
     6421 ttaaaacctt tcgctacaaa attttttagc gcctttgaaa aagaaattag cccttatcct
     6481 gtagcagata aattttttga taatgctagg attcgcaaag aattaaaaaa tattattttc
     6541 ttaggaggat cacaaggagc tcaatttatc aacgaactag ctttaaattt agcaccaaaa
     6601 cttcaagaac aaaatatcaa aatcatccat caatgtggaa aaaatgattt tgaaaagtgc
     6661 aaaaaacatt atcaaagctt aaatatccaa gctgatattt ttgattttag tttaaatttg
     6721 gaagaaaaaa tgaaaaatgc agatctagct atatcaagag caggtgcaag tactcttttt
     6781 gaactttgtg ctaatacttt gcccactatt tttatacctt atccttatgc agctaaaaat
     6841 catcaatact ttaatgctaa atttttacaa gatcaagctt tatgtcaaat ttttatgcaa
     6901 aactctatta atcttgatga attttttaag tcaatattaa aactaaatct agaaaatatt
     6961 tctacaagat tgcaaaatat aacccaaaaa aatggcgcag atatgctaat ccaaaaagct
     7021 ttatttgata atttgacttt tataagataa atatccaaag atatttacta aaattccaac
     7081 aaaaactaac atcaaaatag caaatgaaaa attttcaaat ttgtcatgca aaaaacctat
     7141 aatccattgt ccttgtgctg caattaaata tccaaaaccc tgagctaaag cagaaagtct
     7201 cgctgctatt tgagcattag agcttttttg tgcaataaaa agcaacgcaa tgccaaaaac
     7261 tccaccccat ggaaaaccca tgataaaagc actgataata atagaaattt tactatcaaa
     7321 aataaagagc ataccaaaag cgatcacata catactgcac aaacctgcta tgtaaaaagt
     7381 atgtaaattt tgtcttaatt ttcctaaaag taaagggcca aaaagagaca ctggagctgc
     7441 aacaagttga gcaaataaaa ccatacttgt agaaaattct ttatcaaatc ctttttctac
     7501 aacaatttga acataccaaa aaaacaaaga ataagctaaa aaactttgaa atcccataaa
     7561 aagagtaatt ttccaagttg ttaaatttat aaaaagattg atttttttat gagctttttt
     7621 cttaatacga aaaaatctac catttttagc ttgaggatag taaactacta aagctacaaa
     7681 agaaaaaata gcccagaaaa acatagctcc agctaaatca aatacactaa gcaaaggtat
     7741 agctaaagca atacctataa tcgaagaaat actcaaaaca agactataaa ttcccattat
     7801 acttgccatt ttttttggaa atttttcttt aataaaacta ggaagtaaaa catttgcaat
     7861 tgctatacca cagcccattg ctaacattcc taaaaataag ccatatacac caaaataaga
     7921 acgaataatt tcgcctaaaa aaattaaaaa aattccaaaa acaatagcac gaataggaga
     7981 aaaatacccc acaataaaag aaatacctcc aaaagctatc aaaggaagac ttgtaagtat
     8041 gcctgctacg gttgagttta aataatactt atctttaata atatcaataa taggccccac
     8101 tgcagtaatt ggggctctaa gattaaaagc tacaataata acaataataa cattaatcca
     8161 aaatatcttt ttaaaagaag ccataaaagc cttatttgtt aagttctact ttgaatattt
     8221 taccttctgc catcttagga atccataaaa tattaccttc aataaatata tctgcaggac
     8281 ctttcatcaa aggaagttca agttttacag atttaacatt atctaaatta taaatatatc
     8341 catttagatt atttccccaa gaacttacca ataaaccatc tttataagga actattccat
     8401 cataagattc tttttcattt ttaattatac tgagttcttt tgtatttaaa ttataagcca
     8461 ttacaacacc gccacttaca ccatcaggat gataaccagt tataaaaagc ttatgttttt
     8521 ttctatctag atataaccca tttggaccgc caaattttgc taaatcaagt tttaataatt
     8581 catcatattg cttagttttt aaatcaacct ttaaaataag ccctgtgcca gtatcgctaa
     8641 ccaaaagcgt attgtcgtct aatttttcta tgtcatttaa aaagattgca cctttaatag
     8701 gtaaattaaa aatttctttt ttagttttaa gatcaaaacc gcgtaaaaca tcgatatcta
     8761 ccacataaag agtttttcca atctccatca tgccttttgg tgcattaaga tgggttaaaa
     8821 atttatattc tagcactttg ccatttttat caagcttaga aataaatcca tcattatctt
     8881 tcgccaaagg ttcaagtttt tctcctacat tagatacata aacatagttt ttatctacaa
     8941 aaatactttc agggctttta aaaccatcaa attcttgata ttttaattca cttgcaccaa
     9001 gcaaacttcc aagaagcgct aaacttaaaa catatttttt catattttct cc
//
LOCUS       DARGBD010000070         8948 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.070, whole genome shotgun sequence.
ACCESSION   DARGBD010000070 DARGBD010000000
VERSION     DARGBD010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8948
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.070"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            221..904
                     /locus_tag="SFZ04_001318"
     CDS             221..904
                     /locus_tag="SFZ04_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG8065584.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNETIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIYPRQAR
                     KMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYEKTFHI
                     KIPLVYKLS"
     gene            complement(996..1806)
                     /locus_tag="SFZ04_001319"
                     /pseudo
     CDS             complement(996..1806)
                     /locus_tag="SFZ04_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843529.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(2235..2329)
                     /locus_tag="SFZ04_001320"
                     /pseudo
     CDS             complement(2235..2329)
                     /locus_tag="SFZ04_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2919..3035)
                     /gene="rrf"
                     /locus_tag="SFZ04_001321"
     rRNA            complement(2919..3035)
                     /gene="rrf"
                     /locus_tag="SFZ04_001321"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(3271..6177)
                     /locus_tag="SFZ04_001322"
     rRNA            complement(3271..6177)
                     /locus_tag="SFZ04_001322"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(6712..6788)
                     /locus_tag="SFZ04_001323"
     tRNA            complement(6712..6788)
                     /locus_tag="SFZ04_001323"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6752..6754),aa:Ile,seq:gat)
     gene            complement(6797..6872)
                     /locus_tag="SFZ04_001324"
     tRNA            complement(6797..6872)
                     /locus_tag="SFZ04_001324"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6837..6839),aa:Ala,seq:tgc)
     gene            complement(6975..8487)
                     /locus_tag="SFZ04_001325"
     rRNA            complement(6975..8487)
                     /locus_tag="SFZ04_001325"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         2716 a         1893 c         1424 g         2915 t
ORIGIN      
        1 aatttatttt ttcttgctat aattcttaaa aatataagtt tttttagaga agtaaatagc
       61 aaaaattaaa tatcttttag atacaagctt gattatttga ttgttatttt tctctgtgaa
      121 atttgtttca aaaatttatc tttttaaaca atttatcata gaatgtgttt aagaaataaa
      181 gatatttaaa tcaaaaaata aaatcataac ggagtaaaag atgaaaacat ttataagcaa
      241 tcataaaaac caatcttctt ttatcacttt atttgttttt acacctttat tttttgtttt
      301 tctttattct aaagattttt tacacataca acccaatgaa actattaaag aaaataaatt
      361 taatatggca atcaaacatt ttgtacaaaa ttcctccgat atgaaaccga cacaacctac
      421 acaaactata caagagcctt cgaatgtgca acctaaagaa cctgtgcaag aaataaaaaa
      481 aataaaaccg agaaaagaaa aacctatcgc taaacctaaa aaaataatcc ctccagcaaa
      541 tgcaaaggca ataagtcaac ccaaaaaaga tacaaacatg cagcaacaaa ctccacaagc
      601 cagctcttac caaagcgtat ctttaactag taatagtgag cttttaaaag aaataaaatc
      661 agcaatcgat gaagccctaa tctaccctag acaagctaga aaaatgcgta tgagtgggga
      721 ggttcttgta gaatttacct ggacaaaaga aaagaaatta gaaaatttaa aaatacttaa
      781 gccttcaaaa tatgattttc taaataaaag tgctttagaa actatacgca tagcttctaa
      841 aaaatttcca caatatgaaa aaacttttca tataaaaata ccattggtat ataaattaag
      901 ctaaatcttt cacaatatac tctattttta atacaaatca ctccagcttt gctaacgctt
      961 agaagtagaa gcttcctagc taaagctaac tagtattagc taattcgaaa ggctttgagt
     1021 ttatagtcct caaggctaat tcctaaccca aacgacttta atccacgctt taagatatta
     1081 tttgcagcat taatatctct atgtaaagta ttgccacatt tttcacaaag atacactcta
     1141 tctttaaaca taagattttt tttgatattt ccacatacac tacaagtttt gcttgtatat
     1201 tgtggattga cttttataaa gaatttgcca ttatgctttg ctttatactc tagatattga
     1261 gagaattgat agaatgaagt attaagaata gatttattta aaccactttt agcttttata
     1321 ttctttaatt tagctctttt acacatattc ttaatttgca aatcttcaac tgctagcaag
     1381 tcaaattctt gtatgagttt tgaagttatc ttgtgataac tatccttttt gatatttgaa
     1441 cttttttcat agattttatt taattttaat tgtgtttttt tgaaattatg gcttaacttt
     1501 gttttctcct tttttgtttt taatattctc ctgctttgtt ttctttgcaa tcttttaata
     1561 ttcagctcta ctaagtagct ttaataactc tccactgctt aaggtaatct cattgatatt
     1621 taaatcaatg tcaactgctt ttttaatatc aaaatctttg ctagatatta aagaaacatt
     1681 tgattcatca taaatgatac taaaagctaa atagtattta ttgtgatttt tgataatagt
     1741 gatttgatta aacttataag tatttggtaa atctctgtga taacgcattt taaaaaatgt
     1801 attcataagt ctaaatatct taaacttagt agtatcacta tctttgattt tgtaggcttg
     1861 attattccaa ttaaagcttt gctttgcaaa tttagagttt ttaaatttgg gaaagccttt
     1921 tttttatctc taattgcttg ctctaaggca cgagaagatt aatccttgct tgttgggtta
     1981 caacactttt atagcttaat tctcttgctt ttataaggct agttttattg attatctatc
     2041 ttacttgcct ttaaataact cctatctttt ttatctaaat tcttattttt atcccactgc
     2101 tcttgctgta aatttaaaca aatattatag gcttgatata gatgaaacat tgatgattaa
     2161 taagcttttg ttgttctttg tttaggtaga attctatatt taaaaccttt ggttatttgc
     2221 attgctttgt tccattaggg ctttttttct ttttggttat atattttttc ttagggtaat
     2281 tatcttctat gccttgattt tctgcatatt ttttaagagt ttctagcatt attccgcata
     2341 ggtattctat aaaaatactg attatgtcaa atacctaact agagccgtac aactaacact
     2401 gtaagcaatt catctcccac ttaagaagtg agagttttat tgaataaaaa aagataaatt
     2461 taaagcaagt aatctttttt tagacaacac taaacccttg catgtattta cagcaatatt
     2521 tatttcatca taaacaaccc ccaacccata aaacctcaat aaacactata aaataaactt
     2581 gagtgattaa aaatccaacc caattattga ataaacccaa cctacataat aaaatataaa
     2641 ctagacatat aaagaacaat tgacacataa aaatagattg aataaataaa cctatacaag
     2701 taaacataaa agattaatta ttgatacaaa agattcaata aataaaaaga ataattgaga
     2761 tataaaaaca tataaactaa gcaactcaaa caaccattaa attaacccaa gctaattaaa
     2821 cctataaaca taaaaaaata attaaatata aaaacaacga ttgacatata aaaactaaga
     2881 ttttaaatct ataagaataa gataaagcag aattaacaag tccgcaatga gctactttcc
     2941 ccctgccagt aaggcgtagt atcatcaccc acgatgtgct tagcttcttg gttcgggatg
     3001 gagcaaggcg tttccacatc tgtataatca cggacattgt tatttaaata ttctttgaaa
     3061 aattgaattt aagaataaaa cttaatcttt tattctcttt cttcttttct tatcttttat
     3121 ctttgataag tttttatata gaatacttaa aaaacaatgt taagagcaag ttctaataca
     3181 aactttactt gaaagatttc tattaaactc taaatattat ctatattcaa agtcttctta
     3241 aaaaccttaa caaggaagtg atgctttatt aaagataagc caaacgctct attagtactg
     3301 gtcagctaaa ggactttcat ccattacaca cccagcctat caaactagta gtcttctaga
     3361 gagcttagag aagattcatc ttagagttgg cttcacgctt agatgctttc agcgtttatc
     3421 ctttccaaac ttagctacgc tgcgatgctc ttggcagaac aacagctaca ccagtggttt
     3481 gttcaacccg gtcctctcgt actagggtca aatctcttca atcttcttac gcccacggca
     3541 gatagggacc gaactgtctc acgacgttct gaacccagct cgcgtaccgc tttaaatggc
     3601 gaacagccat acccttggga cctgctccag ccccaggatg cgatgagccg acatcgaggt
     3661 gccaaacctc cccgtcgatg tgagctcttg ggggagatca gcctgttatc cccggggtac
     3721 cttttatcct ttgagcgatg gcccttccac acagaaccac cggatcacta agaccgactt
     3781 tcgtctctgc ttgacttgta tgtcttgcag ttaagctggc ttataccttt atactctacg
     3841 aacgatttcc aaccgttctg agccaacctt tgtaagcctc cgttattatt tgggaggcga
     3901 ccgccccagt caaactaccc accagacatt gtcccacttg aggataactc aagctggtta
     3961 gctacccaaa taagaaagag tggtatctca acaatggctc atatacaact ggcgtcatat
     4021 actcaaagcc tcccacctat cctgcacatt cttatccaag tagcagtgtc aagctgtagt
     4081 aaaggtccac ggggtctttc cgtcttgccg cgggtaggag gaattttcac ctccactaca
     4141 atttcactgg atccctcttt gagacagctc ccatctcgtt acgccattca tgcaggtcgg
     4201 tatttaaccg acaaggaatt tcgctacctt aggaccgtta tagttacggc cgccgtttac
     4261 tcgggcttcg atcaagagct tcgctaatgc taaccccatc aattaacctt cgagcaccgg
     4321 gcaggcgtca caccctatac atcctcttac gagttagcag agtgctgtgt ttttggtaaa
     4381 cagtcgggag ggactctttg ttgtaagttt ccttgctttc ggagtaaatc ctaatacaaa
     4441 gctaaccaca ccttataccg aagatacggt gctattttgc agagttcctt aaagagagtt
     4501 cttccacgcg ccttagaata ctcatcccac ccacctgtgt cggtttacgg tacgggcaac
     4561 attagctaaa cttagaaact tttcttggct cgacggcatc aggggttctt ctatccatcc
     4621 gaagacttca aaaagccttt cagttctcgg agtattgtta tacggatttg cctgtacaac
     4681 ctcctacgac cttagactag cacttccatc cgctagcccc cttagcccta agcgtccttc
     4741 catcgcacac taatgttggt attggaatat taaccaattt gccatcgtct acccctttcg
     4801 gactcgactt aggacccgac taaccctacg atgacgagca tcgcgtagga aaccttgggt
     4861 ttacggcgtt aatgattctc acattaatta tcgctactca tgcctgcatg ctcacttcta
     4921 ttcgctccag cactccttac cggtatacct tcgacgcaaa tagaacgctc tcctaccact
     4981 tagtaaacta agtctacagc ttcggtactt actttagccc cgttatattt tccgcgcaaa
     5041 atcactagac cagtgagcta ttacgctttc tttaaaggat ggctgcttct aagccaacct
     5101 cctggttgtt taagtaactt cacatcgttt tccacttaag taagatttag ggaccttagc
     5161 tggtagtctg ggttgtttcc ctcttgacga cggattttat cactcgccgc ctgactgctg
     5221 tgattacata taaggtattc ggagtttgat agggtttggt acattggtgt atgccctagc
     5281 ccattcagtg ctctaccccc ttatattacg acacaacgct atacctaaat atatttcgga
     5341 gagaaccagc tatcacgaag tttgattggc ctttcacccc tatccacaag tcatcccggg
     5401 gcttttcaac gcctatgggt tcagtcctcc actagttctt acactagctt caacttgctc
     5461 atggatagat cacttcgttt cgggtctgca gcatctgact aagcgcccta ttcagactcg
     5521 ctttcgctac ggcttcgcgt ttgcttaacc ttgccagaca ccacaactcg caggctcatt
     5581 atgcaaaagg cagtccatca ccctgtattg ctacataggg ctctgaatga ttgtaagcaa
     5641 atggtttcag gttctatttc actctgatca cctcagttct tttcaccttt ccctcacggt
     5701 acttgtgcac tatcgatctg gtattagtat ttagggttgg atcgtggtcg acccggattc
     5761 agacaggatt cctcgtgtcc cgccctactc aggatactgc tagctaaggt ttgtttttcg
     5821 catacgggac tatcaccctc tatggttata ctttccagaa tgttctgcta aacttacctc
     5881 ttgcacattg cagtcctaca acccccagtg caagcactgg gtttgccctc ttgcgctttc
     5941 gctcgccgct actgacgcaa tctctattga tttcttttcc tgagggtact aagatgtttc
     6001 aattcccctc gttcgctcct atataggtaa tgtatatctc tatacattgg gttgccccat
     6061 tcggaaatct acggatcaaa gcttcttgac agctccccgt agcttatcgc agtctagtac
     6121 gtccttcatc gcctttacca gtcaaggcat ccaccattcg ctcttagtag cttacctttt
     6181 ttacctttta ttattgattc taaaacgcat cacttccttg ttaaagtttt tatgataaga
     6241 cttctttatc ttaagacgga aagcattcaa acacttaata taaaactaaa tgatttagtc
     6301 tcaactaagc agtgagtttg aaacttgtct ttaatttata atccttaaat ctaatattct
     6361 ctttattcat agaagagaag acagctaaaa gttaagttaa actaaagaaa agataaatag
     6421 gttttatcct ttaacaagtc ctgtaaaatt gtttttatta aaacttgctt gtgactctta
     6481 acaatgataa ttaaaaagaa catttaggtt taaaacctaa aggaagtata tatattaaca
     6541 taatcattat aaatataaat gcataatgta tatgctactt atatctatta aagtatattc
     6601 ttttatagtt aaagataaaa ataaatctaa gtatagagtt tatattttat atttaatcta
     6661 ttttatatac ttgctttaga ttttaaagct tctttattca aatctttttt atggtgggcc
     6721 taacaagact tgaacttgtg acctcaccct tatcaggggt gcactctaac cagctgagct
     6781 ataggccctt aataaatggt ggagaatagc gggatcgaac cgctgacctc ctgcgtgcaa
     6841 agcaggcgct ctcccagctg agctaattcc ccataaacaa ttagctttat catcaatctt
     6901 tgaaatctaa acaagaatca attgagttta tatattgaag taatagttgt gagacttatt
     6961 actttgtact ctagaaagga ggtgatccaa ccgcaggttc tcctacggtt accttgttac
     7021 gacttcaccc cagtcgctga ttccactgtg gacggtaact agtttagtat tccggcttcg
     7081 agtgaaatca actcccatgg tgtgacgggc ggtgagtaca agacccggga acgtattcac
     7141 cgtagcatgg ctgatctacg attactagcg attccggctt catgctctcg agttgcagag
     7201 aacaatccga actgggacat attttataga tttgctccac ctcgcggtat tgcgtctcat
     7261 tgtatatgcc attgtagcac gtgtgtcgcc ctgggcataa gggccatgat gacttgacgt
     7321 cgtccacacc ttcctcctcc ttacgaaggc agtctattta gagtgctcgg ccgaaccgtt
     7381 agcaactaaa tacgtgggtt gcgctcgttg cgggacttaa cccaacatct cacgacacga
     7441 gctgacgaca gccgtgcagc acctgtctct aagttctagc aagctagcac cctcttatct
     7501 ctaaaaggtt cttaggatat caagcccagg taaggttctt cgcgtatctt cgaattaaac
     7561 cacatgctcc accgcttgtg cgggtccccg tctattcctt tgagttttaa tcttgcgacc
     7621 gtactcccca ggcggtacac ttaatgcgtt agctgcatta ctgagatgac tagcacccca
     7681 acaactagtg tacatcgttt agggcgtgga ctaccagggt atctaatcct gtttgctccc
     7741 cacgctttcg cgccttagcg tcagttgagt tccagcagat cgccttcgca atgggtattc
     7801 ttggtgatat ctacggattt tacccctaca ccaccaattc catctgcctc tccctcactc
     7861 tagactatca gtttcccaag cagtttaatg gttaagccat tagatttcac aagagacttg
     7921 ataatccgcc tacgcgccct ttacgcccag tgattccgag taacgcttgc accctccgta
     7981 ttaccgcggc tgctggcacg gagttagccg gtgcttattc cttaggtacc gtcagaattc
     8041 ttccctaaga aaaggagttt acgctccgaa aagtgtcatc ctccacgcgg cgttgctgcg
     8101 tcagggtttc ccccattgcg caatattccc tactgctgcc tcccgtagga gtctggaccg
     8161 tgtctcagtt ccagtgtgac tgatcatcct ctcagaccag ttaagcgtca tagccttggt
     8221 aagccattac cttaccaact agctgatact atatagtctc atcctacacc gaaaaacttt
     8281 ccctactcaa cttgtgttaa gcaggagtat agagtattag cagtcgtttc caactgttgt
     8341 cctcttgtgt agggcagatt aactatacct tactcacccg tgcgccacta atccacttct
     8401 agcaagctag aagcttcatc gttcgacttg catgtattag gcacgccgcc agcgttcact
     8461 ctgagccagg atcaaactct ccataaaaat tatagatagt ttaatctttt tcttcaaaga
     8521 aaaagttatg aaagattaaa agaaaaactt ttaatctttt taattattag attgaataga
     8581 ttttacataa ttacttatgc ctaaatcttt ctggctcaat cgatcactta tttagatttc
     8641 aaagattgac taataagatt tgaataacaa tactaagtta aaagaacaaa acaaaaaatc
     8701 atttttaaaa gaaaagtttt taaattaaaa aacaagattt ataaaaaagc ttttagttta
     8761 taagacaaaa accaaaagag ttaatttata aaatctacta agctagtgaa actttataat
     8821 ttaaaagatt ttaagtcctt ttttcaaaaa aaggaaatga aagtataacc aattaaactt
     8881 aaaagtgtat taaacaaagg attaaatagt ataaatattt gtgtaagtat ttatataagt
     8941 atttggtg
//
LOCUS       DARGBD010000071         8729 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.071, whole genome shotgun sequence.
ACCESSION   DARGBD010000071 DARGBD010000000
VERSION     DARGBD010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8729
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.071"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..557)
                     /locus_tag="SFZ04_001326"
     CDS             complement(<1..557)
                     /locus_tag="SFZ04_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HEG8065585.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHIFSKENHYLIATLSNP"
     gene            complement(557..2365)
                     /gene="typA"
                     /locus_tag="SFZ04_001327"
     CDS             complement(557..2365)
                     /gene="typA"
                     /locus_tag="SFZ04_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEG8065586.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2500..2823
                     /locus_tag="SFZ04_001328"
     CDS             2500..2823
                     /locus_tag="SFZ04_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065587.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTEILENEENLEKILNARNLEELLNILIALNEDKMIKVYEDSYLKEKFPNVMV
                     DKFLK"
     gene            2841..4634
                     /locus_tag="SFZ04_001329"
     CDS             2841..4634
                     /locus_tag="SFZ04_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8065588.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSNTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTNTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQ
                     DQNKNLKNNDQNLNLDKNLNKEIVKDTQKLVSNLTQKDFNLNKEPKNNNKENKDIKQN
                     FFDQKLNFENLNKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVDKNSLDELNS
                     LVKDLNKVTQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVT
                     LIQRGNNLHINFNSNTNAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQG
                     KNRSGYGFKDALDGKNESEKVNLELVLAKYF"
     gene            4688..5572
                     /locus_tag="SFZ04_001330"
     CDS             4688..5572
                     /locus_tag="SFZ04_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HEG8065589.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDSKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            5576..7213
                     /locus_tag="SFZ04_001331"
     CDS             5576..7213
                     /locus_tag="SFZ04_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG8065590.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(7217..>8729)
                     /locus_tag="SFZ04_001332"
     CDS             complement(7217..>8729)
                     /locus_tag="SFZ04_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG8065591.1"
                     /translation="ILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSIKEIE
                     LEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIYRILG
                     KEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHTGYCI
                     ANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVNGNVG
                     ATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKNVFVE
                     NCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSDTECE
                     NLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLYHDII
                     KKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPNTNTN
                     LELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
BASE COUNT         3074 a         1301 c         1369 g         2985 t
ORIGIN      
        1 ggattgctta aagtagcaat aagataatga ttttctttag aaaagatatg atttaaagtg
       61 aaatttttat cttgaagttt gatataaatt tgctcttcat tttcaaagct aggatttttg
      121 tttgcactta aaatttcgag caaaattccg caaaaaaagc gtttattttc gtccaaaaac
      181 tgaatatcat aaattttaaa atccttaaat tcaaagcagt tttgactttt aaattctttc
      241 aaatcctttg taagtcctaa ttttaaaaag tctttttggc ttaaactttg ctttttaaat
      301 tttgccccaa aacgacgcaa aaacaaattt aaagcattaa tttgtaattc tttttgtgcg
      361 agttttagtt ttttagctgt aaaacgaaag aaaaaaacac ctacaaaaac agctaaaatt
      421 actgcgatta aggcatctct tataaaaaca aaggctaaaa aacctacaag taaggcttcg
      481 ataatgctta ggaattttaa gattcctaag cgtttaagta tataaagtct attattttct
      541 aagcttttta aatccattaa gattttgctt tttccattct ttttctttga gttgggtcaa
      601 gatagcgttt gcgaacacgc acatttacag gtgtaacttc tacaagttca tcttcttcta
      661 tccactctaa agctctttca agacttaatt ttctaggtgg cacaagtttg attgcatcat
      721 cgcttccact tgctcttaca ttggtaagat tctttccttt gataggatta acatctaaat
      781 catttggacg agagtgctca cctataatca taccggtata aactttagtt tgaggctcta
      841 tgaaaagtac tccacgctct tgaaggttaa acaaagaata ccctaaagcc acgccatttt
      901 ccatagaaat taacgctcca ttattacgct tttcaaccgc accgctaaaa ggacggaatt
      961 ctaaaaagct atgattcatc acgccttcgc ctttggtatc ggttaaaaac tgacttctaa
     1021 aacctataag tccgcgtgct ggaatttcaa actcaagtct tgtttgtcca tcgcctgttg
     1081 gcgccatggt tttcatttca gcttttcttt tgccaagttt ttctattacc gcaccgctaa
     1141 attcctcagg tacatcgata actaaatgtt caaaaggttc tgttttaacc ccatcttcaa
     1201 cctttacgat aacttcaggt cttcccatac aaaactcaaa accttcacga cgcatatttt
     1261 cagctaaaat agtgatttga agttcgcccc taccgcttac tttaaatttg ccttcgcctg
     1321 tgctttcgta tttcatagca atattagttt tcatttcagc ttctaaacgt tcagcgattt
     1381 tatttgaagt tacatgtttt ccttcagttc ctgctaatgg gccatcattt acagaaaata
     1441 ctatacttaa agtcggctct tcaatgtgta aaggatcaag tggcatagga ttgtttggat
     1501 ctacaacgct atcacccaca tctaaagctt caaaacctgc tatagctacg atatctccac
     1561 ttcctgcttc ttcaatatcc attttttcta agcccataaa gccaatgagc tttgaaattc
     1621 taccatttac tttggtgcca tcagcttttg caagcattac gctttgattt ttcttaacaa
     1681 ccccattgaa aattctagca atgcctattt tacctacgaa attatcatac cctaaagtga
     1741 aaacttgaag ttgtaaagga ttgtcatttg taccacttgg cgctggaacg cgttcaagta
     1801 tagttttaaa aagtggctcc atattatcac tttcatcgtt tagatcaagc ttagcataac
     1861 cattttttgc tgcagcataa actatagcaa agtcaagttg ctcatcgttt gcatctaggg
     1921 ctacaaaaag atcaaaaatt tcattgatta ctctttcagg atcagcagct ggtttgtcga
     1981 ttttgttgat tacaactata ggtttaagcc ctaaagataa agctttttta accacgaatt
     2041 tagtttgcgg cataacgcct tcttgagcat ccactaaaag caaaactcca tcaatcattt
     2101 ttaaaacgcg ttctacttct ccgccaaaat cagcatgccc tggagtatct atgatgttga
     2161 tttttgtacc tttgtaattg atcgctgtgt tttttgaaag tatggtaatg ccacgttctt
     2221 tttctatatc gttgctatcc ataacgcgtt ctgaaatttg ttctctttcg ctaaaggtgc
     2281 ctgattgttt taataattca tctaccatag tggttttacc atggtcaacg tgagctataa
     2341 ctgctatatt tctaatgttt tccaaatttt cttctccaaa gctaaatttt taaaagctta
     2401 gattatacaa aaatttaact taaactacaa agcatcaaaa cttggaacac ttcttgcttt
     2461 aaagacttgt gaaattaaaa ttttaaaaag gaagttaaaa tgtcaaaacc attaaatgaa
     2521 gagattttta ttgaatttaa aagcgattta gctgagagaa aaaatgaagt tttacttcaa
     2581 gttttagaac ttttagaaac ttttagatca gataaaaacg aaaaaatggc aagaatttca
     2641 agtgagctta cagaaatttt agaaaatgaa gaaaatttag aaaaaatttt aaatgctaga
     2701 aatttagaag agcttttaaa tattttaatt gctttaaatg aagataagat gattaaagta
     2761 tatgaagatt cttatttgaa agaaaaattt cctaatgtaa tggtagataa atttttaaaa
     2821 taattttttt tgaaggaaaa gtgatgtcaa atttagctcc gcaaaatgat gttttaaatc
     2881 ttacgccgag taaaacttct aatactagta gttcctttag taaaacgagt aaaaataaag
     2941 aacatgaaag tagcgatagt aaaaattcaa ctcaagatga tacagagagt tttttaaatt
     3001 ctttgcttaa ttctatcaat gaaaccaatg aatttttacc tgatcatatg aagatcagtc
     3061 aaaaagaagt tgttaatgaa gcgatgagca gacttcaaaa aggagctttt gatgagagcg
     3121 ataagataag cattttcgaa tctgcttctt ttatgcaaat tctttctttg ttagataagc
     3181 taaaaacaaa tacagcagat gttaaactag caaatctttc tactcaactt tcaagtctta
     3241 ttaaaacaga ggctaatttt aatgctttaa aaggtgcatc aaatcttagt gagcttttgg
     3301 acatagctaa agatctgggc ttaaatgtaa aaaatattaa agtagatcgt cttcttgatc
     3361 ttaaagcaac ttttccaaat ttagataagg ctgatttttt taagggtgct gtggataatg
     3421 tttttaaaga aatcatcaat aataaaattt ccaatgtgag taaaaattta aatcacaatt
     3481 tagaaaatac aactcatact acaagcactc attctatgca aaaaacaaat tctaaagata
     3541 gcggttcttt gctttctcaa actttaaaaa atttagattc catactttca tccaaagaaa
     3601 gcaaacacga aaaaaacgat aaagttaaat caaaaataga agaagatacc acagatgcta
     3661 aaaatacttt aaaaaatatc aaaaatgatg agtttgcaaa aaatttaaca gaagagttaa
     3721 atataaaaga taaaaaaaac caagataatt taaataaaga aagcaaagac ttaaacaaag
     3781 attttaataa agagttaaat aaaaatcaag aaaaaaacaa tttaaatcaa gaaaatatac
     3841 aagatcaaaa taaaaattta aagaacaatg atcaaaattt aaatcttgat aaaaatttaa
     3901 ataaagaaat tgttaaagat actcagaaat tagtttcaaa tttaacacaa aaagatttta
     3961 atctaaataa agagcctaaa aacaacaaca aagaaaataa agatataaaa caaaatttct
     4021 ttgatcaaaa attaaatttt gaaaatttaa ataaaactca agtagttcaa aacaaagaga
     4081 ataatgcaaa ttttaataat aatactacta ataaagaaac ttttactcaa gagcaaacaa
     4141 aaacgcacag tgaaaatgta gataaaaata gcttagatga gttaaattct ttagtcaaag
     4201 atttaaataa agtaacacaa aacaatgctc gcaatatcac tcctaaagaa actttgcagt
     4261 atttttcaca agatttaaaa gaggctgtgg atcaatacaa agcgcctatt actaaactta
     4321 gtatcactct aaatcctaat aatcttggag aagtggaggt aactttgata caaagaggta
     4381 ataaccttca tatcaatttc aactccaata ccaatgcaat gaatttgttt atccaaaatc
     4441 aagccgagtt taaaaattct cttgtaaata tgggatttac tggacttgaa atgaatttta
     4501 gtgatcaagg taaaagagag caaaatcaaa atcaaggaaa aaatcgtagt ggatatggtt
     4561 ttaaagatgc tttagatgga aaaaatgaaa gtgaaaaagt caatctagag cttgttttag
     4621 cgaagtattt ttaaattgga acacttattg cttaaataat aaaaaactaa ataaaaagga
     4681 gtttataatg atatcatcat cggattggaa tttaaatacc actgctacaa cttcaggtac
     4741 tacttcttca ggaagtacta gtggaacaac tagaacagat tcaagcagta gctcaggaat
     4801 agtgagcaat ccaaatgcta ccttagataa ggatgcgttt ttaaaacttc ttttgataga
     4861 gcttcaacat caagatccaa cagatcctat ggatagcgat aaaatgctta ctcaaacttc
     4921 acagcttagt gcacttgaaa tgcagcaaaa taccaataca actatgcaaa aaatggttga
     4981 aactatgcaa aagctttctg attcttttag tacaagtatg agtacttcag ctttaggggc
     5041 tattggtaaa atggcaactg tttcagataa taaaatcaaa cttacaggtg cagatgagct
     5101 tatcgctctt aaaatgtatt tgcctgaaga ttctgatgaa aacggtgtta cgctagaaat
     5161 ttatgatagc aataataaac ttgttttcag tgaaaaaagc gattctaaat ctatttctca
     5221 aggtttattt actatggagt ggccaggaag aaataacgat ggggtttatg caggtgatgg
     5281 tgagtacact gttaaaatgg tttataataa taaaaatggt gaaaaaatca ctgcaaatta
     5341 cggaacttat cctatcgaag gtgttgtttt taaagatggt gttgcctatg caaaaatggc
     5401 tggacaagaa gttccttttg atgcaataca agaaataaca gattataagc ttggttcatc
     5461 ttcatctact ggaggaagcg gttcaagtgg agactcaagt ggtggttcaa gcgatggaga
     5521 ttcttctggg tctggatcta cagaagatgg cgacaaagag gaaaaggcat aagccatgat
     5581 gaattcattt tataatggga tttctggagt aaaaagcaat agctttggta ttgatatcac
     5641 tgctaataac atagcaaatg tcaataccac gggctttaaa tactctgatg ctcaatttaa
     5701 agatattttt tatactacca taacaaccca atcaaccaac cctgctcaag gtggttatgg
     5761 tagcggtgca gcatcttctc aagttgtttt cgaacagggt tctcctgttg caagtgatgg
     5821 cgaatttgat gtggctttgc aaggaaaagg attttttggg gttttagggg ctgatggtaa
     5881 tgcttactat actagaaatg gatcatttag aagagatgcc aatggatatt tggtggattc
     5941 ttatggaaat tttgttttag gaacaatgaa tcctgctttt actggtatta actatagcga
     6001 tagagttgct gggcttatgg gggattatct taacacagga actccggtaa ataatggttt
     6061 tactgtaaat tcaaataatt ctttcagtat aggcacaaca gcttctcaag gggctattaa
     6121 agtacctgtg aatatgtatt tacctcctca agtaactcaa aatgtaaaat ggagtggaag
     6181 tttaaatact aacacaacaa cagaagtagt taaagtagat cttgatccta gtaaatttaa
     6241 cattacaaaa actgaagatg gaaaatatgt agttagtggt agtgttagca aagaagatgt
     6301 gtttagtgct aaagcgggtg ataggattat tttaaatttc actgatgata atggcgtaaa
     6361 aacaagcttt gaagcgactt tagatgaaaa tctaaatttt aaaagtaacg agcttgattt
     6421 aaaaggattg gatgaaaata gcatcaagct tgatacagct caaatttcaa cagagcaaca
     6481 aaaagccaat aaagatattt tagaatcccc tatttataat gcagatggaa gtaaaagcac
     6541 tttaagggtt acacttgaaa gagttttacc gcaagaaggc gataatatac aatataaagc
     6601 tattgcacaa atttatgatt ctaatggcaa tgccgtaggc aatccgactg aaggaaatat
     6661 ggtttttgat aaaaatggtg ctttgcttca aaacaatatt acaagcattg caaatccaaa
     6721 tggtggaaca attaatattg atttaggttc tccttatgat gctaacaagc ctggttcggg
     6781 ttatagtggg atttatatta aacaaggcgt cgaaaaaaat gtagttacac aacaagatgg
     6841 tgtagctgaa gggttttttg aacaatataa tatatccgat gatggaagta ttgttgcgca
     6901 atttagcaat ggtaaaaatg ccatagttgg aaagcttgct ttatataatt ttatcaatga
     6961 gcaaggatta gttgctatgg gagataatat ttttgcagca acggcaaata gcggtgatgc
     7021 aagttttatt atgaaagatg gtcaagttgt taatacagct aaatttaaag gcggattctt
     7081 agaacaatca aatgttgatt taagcgcaga gctttcaaac cttatcgtaa ctcaaaaagc
     7141 ctttgatgca agctcaaaaa gtatcactac aagtgatcag atgatacaaa aagccattaa
     7201 tatgaaaaga taattcttag gaattatctt tttctaattt ttcaaaaata attttaattt
     7261 cttctatgtc gctttcgcta taattatggc ttgatttaat ataacttact tgctgtcctt
     7321 tttcaagata taaaaccttt tcatagtctt ttaaatttat atgatgtttt agttcaaggt
     7381 tggtgtttgt gttaggataa aattttaaaa aattatcctc tccgatattt tcggctttta
     7441 tgtatatttt tacattgtaa accatttcat ttaagaaatt taatttcgca tcaatttgat
     7501 attttaattt tataaatttt ttatacgaaa tgctaagatg attgtatttt tttatgatat
     7561 cgtgataaag atttgaaaat ttcatttcta tggcgctagg atttttagtc ttttgaagtt
     7621 tgatgatttt gatttgattt ttgattagat aatcatagta attttgcatt ttgcttatgg
     7681 tgtcatcaag cttacttttt attttaaggc ttagattttt aagattttcg cattctgtat
     7741 ctgagttgtt ttcaatagaa actagtggtg aaactacgat attgttttta aattttatat
     7801 tgtttgttat gattagattt tttcttggat ataaagtatt atccgttagt aaattgcaaa
     7861 tataaatatt ttctgcttct atttttccac ccatgcagtt ttcaacaaat acatttttag
     7921 ctataattgt cccattttct aaatttttta tatatacagt gtcagcttgc aaagttcctt
     7981 tgtgtgttgt aataaaaata tcttgtgcaa aaatttcgct ttttgcatga gttaagcctt
     8041 tgatactgat attttttcca taaagttttg ttgctccaac attcccattt acttttatat
     8101 ttgaagcttg aacatttaca atacctgatt taatagcatc atcacttata tcaaaattag
     8161 tgatttctaa gtttatattt tcatcggtat ttgttttgat tgaaccggtt gttttaagcc
     8221 ctatttgtga taattttaaa ttatttgcga tacaatatcc tgtatgatct ttgtttaaaa
     8281 atccataatt ggcactaaaa tatttaattc tatcttctaa ttcttctgtg taaatgcttt
     8341 catcttttat gataaaagga ttatcaagaa aggctattgg atttaaatga agtatctctc
     8401 ctcttaaatt tcgtccttct tttccaagaa ttctataaat gtattcaaaa agtagctcat
     8461 ttttttcaat aggtttacag tagtttcctt catcatagtt aatattttcg tcaaaacatt
     8521 cttcgttaac atctctatga taaataattt catcactttt atgttcaatc ttatctacac
     8581 ctttggcaat ttcaagctct atttctttaa tagatggact tttttgtatt gataagataa
     8641 aatcatcaat cttatcaaat aaatttttat caagtcttaa gattaaaaat ttttgtttga
     8701 tcattatttt gtagatattt tgcaaaata
//
LOCUS       DARGBD010000072         8610 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.072, whole genome shotgun sequence.
ACCESSION   DARGBD010000072 DARGBD010000000
VERSION     DARGBD010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8610
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.072"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..405)
                     /locus_tag="SFZ04_001333"
     CDS             complement(<1..405)
                     /locus_tag="SFZ04_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8065592.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     PGGAEDMNSYIYIDDYLTRNYKVAVININYHCIGNRPHLGSSFYLDDIDKFILVTSLK
                     AINLKCINVYGINSYENLNNAFIRIDQEIQKLK"
     gene            complement(468..1208)
                     /locus_tag="SFZ04_001334"
     CDS             complement(468..1208)
                     /locus_tag="SFZ04_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEG8065593.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            complement(1205..2293)
                     /gene="pstA"
                     /locus_tag="SFZ04_001335"
     CDS             complement(1205..2293)
                     /gene="pstA"
                     /locus_tag="SFZ04_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEG8065594.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLMQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDSTSVLPTQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            complement(2290..3204)
                     /gene="pstC"
                     /locus_tag="SFZ04_001336"
     CDS             complement(2290..3204)
                     /gene="pstC"
                     /locus_tag="SFZ04_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEG8065595.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVIT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            complement(3214..4209)
                     /locus_tag="SFZ04_001337"
     CDS             complement(3214..4209)
                     /locus_tag="SFZ04_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG8065596.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGITDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            4389..4892
                     /gene="ctf"
                     /locus_tag="SFZ04_001338"
     CDS             4389..4892
                     /gene="ctf"
                     /locus_tag="SFZ04_001338"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HEG8065597.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            4935..6311
                     /locus_tag="SFZ04_001339"
     CDS             4935..6311
                     /locus_tag="SFZ04_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HEG8065598.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPSNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGMPRTIVNILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNSFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            6312..7322
                     /locus_tag="SFZ04_001340"
     CDS             6312..7322
                     /locus_tag="SFZ04_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HEG8065599.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIRDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            7309..8487
                     /locus_tag="SFZ04_001341"
     CDS             7309..8487
                     /locus_tag="SFZ04_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEG8065600.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKTKGAKINLDTTLDKKNFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDIHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
BASE COUNT         3024 a         1436 c         1171 g         2979 t
ORIGIN      
        1 ttttaatttt tgaatttctt gatctattct tataaaagca ttatttagat tttcataaga
       61 atttatacca taaacattta tacattttaa atttatagcc tttaaactag taactaaaat
      121 gaatttatct atatcatcca aataaaaact agaacccaaa tgaggtctat ttcctataca
      181 atgatagtta atattaataa cagcaacttt ataatttcta gtcaaataat catcaatata
      241 aatataacta ttcatatctt cagcaccacc tggaataata caaacaatag cttctatttc
      301 tttactatca tcataagtca atctaaattc taatttactt ccccttttga tatttaattc
      361 tacatcatca caagaatcta tagaataaat ttggtttata atcatattaa accttttttt
      421 tggaaatttt taattaatta tatcatcaaa tttccaaaaa ataaatctca cccaaaagca
      481 ccgcttaagt aagccttggt tttttcttgt tttggatttt caaaaaattc cttgctttct
      541 ccaaattcta taagctcacc taggtgaaaa aatgctgtat aatcagctac gcgtttgcct
      601 tgttgcatat tatgcgtaac catgatcata gaaagattat ggcttaattc tttcaaaagc
      661 tcttcaatca cgcctgaact tataggatca agtgcagaag ttggctcatc taaaagcaaa
      721 agtttaggtt tgatcgctaa agctcttgcg atacaaaggc gttgttgttg tccgcctgaa
      781 agagctaggg cattttgctt taatttatct ttaacctctt caaaaagccc cactttttgc
      841 aagcaatcca ccaccaaagc ttcttcttca tctttgtttt taatcatacc atgaagtttt
      901 ggtgcataag agatgttttc ataaatgctt tttacaaaaa cattaggttg ttgaaaaacc
      961 atgcctacat ttttacgcaa ggctactaca tcttgatttt taacatcttt tccttcaatt
     1021 tccactaaac catcgatttt tgcaatttta tcattcattc tattaaaaca gcgcaaaaaa
     1081 gtggatttac cacatcctga agcaccgatg agtgcagtaa ttttgttttg ttctatttgc
     1141 atattgatat caaataaagc ttgttttttt ccataaaata aatttaaatt tgttgttttt
     1201 gctatcactt taattttcct tgaaaatatt ttcttaataa tattgcacta agatttaata
     1261 cgactaaaag tcctaaaagc acaataatac ccgctgcggt tctttctaaa aatgcacgct
     1321 ctggcatagc cgaccatgag taaatttgag taggcaaaac gctagttgaa tcaaaaatcg
     1381 aactagctac atcagggata aatgctatca taccgataat catcaaaggt gctgtctcgc
     1441 ctatagcccc tgctaaagtc aaaatagaac ctgttaaaat cataggcata gctaaaggta
     1501 gcataatgcc ttttaccatt tgaaccttag tcatacctaa ggcataagcg gcatttttca
     1561 tgttaatgtc cacacttttt aaagctgcct tagttgaaac aatgataata ggtaaactca
     1621 tgatcgccaa agtaagccca cccactaaag cacttgagcg aggcattcca aaaagattga
     1681 taaacactcc aagtcctaaa agtccaaaca agatacttgg aatacttgca aggttgttaa
     1741 tacacacttc tataaaatgt gtaaggatat tttgtggcgc aaattcttct aagtaaattg
     1801 ccgctgcaac gcctatagga acactcacaa ccatacaaac aagcataaca agcaaagtcc
     1861 ctacaactga agataaaatt cctgaatttt caggagattt tgagtcccca tttaaaaaga
     1921 aattgctatt aaatttaagc tctatctcgc ctttttgcat aagatcatcg actaaagttc
     1981 tttgtttttc actaaggcga ttatattttt gcttcatata ttgatctact tctgaatttg
     2041 ccaaaagcca agatttttca gtgatttgcc ctgttcttat ctttctttgc tcagcacgag
     2101 ataaaagatc ataagcagga gaatttctat tagcctctac aaaaatatag gtttgcttaa
     2161 aagcaggaaa tccaagataa gccacacttc ctaaaaagat acaaagaaaa attaaattaa
     2221 tataaagccc cattttacaa agtcttttaa aagactttga agctttttgt ctttttttaa
     2281 aaagtttttt cataaatttt tccttttgtg aaagcgattg ataagataaa cgctaaacat
     2341 attgatgatt aaagtgatga caaaaagcac caaacctaaa gaaaaagcac ttaaagccaa
     2401 agaactatca aaagcttgat ctccacttaa agcttctacg atttttaccg ttaccgttgt
     2461 catatcttct aaaaaattta aagttaaatt tggacgcaaa gaagctgcca tcaccactat
     2521 catagtttcg cctaaggctc ttgaaagtcc taaaagacaa gctgcaacta taccaggaat
     2581 agcctcaggt aaaatcacgg caaaaaccac ttcttttttt gtcataccta aagcataagc
     2641 gccattaatc cttttctcgc ttactgcttc aatgcaatct tgagataacg aagccactat
     2701 aggtactatc atgatcccca tgataaaacc tgcgcctaaa gcactttgaa agcttgcttg
     2761 tatgccaaat aaagaaaaaa accacactat aaaaggcgct acaactatag ccgcaaaaaa
     2821 tccaaaaaca acagtaggaa tccctgcaat gatttctaaa ataggtttta agtaattttt
     2881 agattttttg ccagcaaaaa cacctaaata tatagcacac ataaccccta aaggtaaagc
     2941 cgttagcata gcaatcaatg aaatataaaa agttccccaa aaaagcgata gcgctccaaa
     3001 aacaccttgt ttgctcgtgc catctgcatt cataaaagct gcatcagctg cccactgact
     3061 tgagaataaa aaggtaataa cgctttcttt ttgaaagaat tttaaagctt caattaaaat
     3121 tgtaagcatg atagcaaaac ttactatcac gcttacaaaa gcacataaaa aaagtgcaaa
     3181 tttgattatt ttttctttta acaaagtttt tccttaaaaa acttttccag cttttacaag
     3241 ctcatcattt aaaatttttc tatcttctac atgtttttga gaagctttta atttatcatc
     3301 acttaaagga acaagtccta ttttttcaag ctctccacca ctttttgcca aatcatcact
     3361 catataaatt tttgcaaaat caaaggcttc ttttggattt ttcttagcat tgatataaat
     3421 aaacaaactt cttgcaagtt cgtatttttc atctgcgata ctttcttcgc ttggcgtaac
     3481 accatcgata ttagcagcat tgattttgtc tgaattgctc actaaaaagc tataaccaaa
     3541 aattccaaaa gcatccttat caatagtaag tttggaaacg attagattat cattttcacc
     3601 acttgggata taagcaccat cttggcgtat ggttttatac tcgcctttat actcaggaat
     3661 ttttttagac acatcactca ttacaagctc ttctatagta tctcttgttc ctgaacttga
     3721 tggtggacca taaacactaa ttttacgatt tggtaaattt ttattgattt gattccagtt
     3781 tgtataagga tttggtataa gttttccatt ttgtggaatt tcttttgcta atgctaagaa
     3841 aagttctttt tttgtgatat ttaatggagc attggtttta ttttgagcta aaactatacc
     3901 atcataacct atcatcatcc ctactatatc agttatccct gcttttttgc aagtttcaaa
     3961 ttcgcttaat ttcataggtc ttgaagcatt agaaatatca gtagttcctt cacaaaatac
     4021 cttaaatcca ccccctgttc ccaagctctc tactataggg gtttttgtat ttttaatcga
     4081 agcatattct tcagctacaa aagaagtaaa aggatacaca gtcgatgaac ctgcgatttt
     4141 taaatctgct gcatttaaag caccacaaag tgcaagactt gccacactta aagatagaat
     4201 ttttttcatt ttttctcctt aactttaaaa aagtaatgga agtttaaaaa aacttggaaa
     4261 cattttggaa acatttttta ttttgtattt ttcttaaata taatttttaa ctatcaaaaa
     4321 atttagcttg tttttaaaaa aataatatat cattataaaa cattttaaat tttaataagg
     4381 agataagaat gctttctaaa gaagttgtaa aattactcaa tgaacaaata aacaaagaaa
     4441 tgtatgcggc aaacttatat cttagtatga gttcttggtg ctatgaaaac agtcttgatg
     4501 gagctggagc cttcttgttt gcacatgcaa gcgaagaaag cgatcatgct aaaaagctta
     4561 tcacttatct taatgaaaca gattctcatg tagagcttca agaagtaaaa cagcctgaac
     4621 aaaatttcaa atctttactt gatgtttttg aaaaaaccta tgaacatgag caatttatca
     4681 caaaatcaat caatacttta gttgaacaca tgctaacaca taaagactat tctactttta
     4741 atttcttaca gtggtatgta agcgaacaac acgaagaaga agcacttttc cgcggtatag
     4801 ttgacaagat taagttaatc ggagaacacg gaaatggact ttatttagct gatcaataca
     4861 tcaaaaatat tgcattaagc agaaaaaaat aatctttgcc ctactatggg caaatctcgc
     4921 tttggattga aggtatgact tatttttctc tagaatttag tattttaatg atagcttttt
     4981 ttgctattta ttggactttt aaaaatgatt acaaaataca aaatatttta attttaattt
     5041 tctcttatat tatttatatt ttaatcaatc cttatttcgc cttagtttta tttatatata
     5101 ccttttttat acactatttt gccttgctaa tttttgtgcg tcgcaagcgt tatatttttg
     5161 ctacttgcat ggcttttatt attttaaatt tatgtttttt taaatacttt cctagcatca
     5221 aaggaagtgt tgatgagata ttaaattttt tcggtttaga atttttaaat attgatttag
     5281 tattaccaat aggaattagt ttttatacct ttacttctat cacctatctt gtagaagttt
     5341 atcaaaaacg ccgtttagaa agttttttaa atttagcaac cttcttatca ttttttccaa
     5401 cactactttc agggcctatt atgcgaagtt cttttttctt tgagcaggcc tatcaaaaac
     5461 gcgaatttaa acatgcaaat ttaatcatca tcttgcttgt ttttggtata gttaaaaaag
     5521 ttttaatagc caattacctt ggaatttatg ctaaaagtat tttagacttt ccacaatctt
     5581 ataatttcat acaactttta agcgcaattt acgcctatgc gattcaaata tactgcgatt
     5641 ttagcggata tgttgattta gtttgtgctt ttgctttaat gttaggtttt acccttccat
     5701 ctaactttaa catgccttat cttgcaaaaa acctaaaaga tttttgggct agatggcata
     5761 tcagtctttc aacctttata agagattata tctatatacc tttagggggc aatagaaaag
     5821 gaatgccacg cactatagtt aacatactca tcgcttttat actttcaggt atgtggcatg
     5881 gcaatacact tgcttttatt gtttggggtt tattgcatgg tattggcata gtttttatac
     5941 atttgctagc tttaagcaaa tttagtttac aaaaaattcc agctttagga agatttttaa
     6001 cctttcaatt tgtatgtttt acttggattt tcttttacta tagcaaaaat ctagaagatg
     6061 caatagaata ttttaaagct tgttattata attccttcca aattccatct tataacgata
     6121 tctatatgtt ggttgctttt ggggttcttt ttatgatcta tcctttattt attaatttta
     6181 aagaatattg cattaagatt ttaaatctta ctccattttt actaaaacct tttatcatag
     6241 cttttatttt acttttggtt tttgctttta tgccagatgg aattcctgat tttatttatt
     6301 cgagttttta gatgagtgtg gttagatttt tctttatttt gattatagtg cttggcttgg
     6361 ttgttgtagt tatgaatcag agcattagct cttatataga acaaaaatat cactttgcat
     6421 tctatcctca taatgatctt ttaaaagaag ccaatggctt caaaattaaa ttagaacaaa
     6481 ttcgtgcaat tttaagcaac gaacccttgc ctcaaactaa tgaagaaact acaaatcaag
     6541 aaaataaatc aatagatgaa aacttaagta aaatagataa agttctaaac actttagaaa
     6601 atgatgaaaa cacttctcat aaagaaacaa atccaacctt aatccgagat gcaaatatta
     6661 gttttatcga caataccaaa ttagaactac aaaatggaga tgagttttta tttatcggag
     6721 attctttaat gcaaggtgtt gcaatagcct taaatagaga tttaagaaat ttaaatctta
     6781 aggtaaccga tcttagcaaa caaaatacag gcctttctta taaatcctat tttgactggt
     6841 caaaagccac caatgaagct tttattaaaa actcaaatat taaatatctt gttgttcttc
     6901 ttggcgctaa tgatccttgg gatattaaaa aaggaggaaa ttaccatcgt tttggctccc
     6961 cttcttggat agatatttac acaagtcgtg tagatgaaat cattaaaatc gctaaaaaac
     7021 ataaagccaa agttttttgg tttgaaatcc ctcctgtaaa aaaagaagat ttgaacaaaa
     7081 aaatacaagt gctcaataaa atttacagcg atgaaattct taaaaataaa gaaattttta
     7141 tcaacactaa gctatttttt agtgtcaatg atgaatactc agcttatata aaagatgaaa
     7201 acaatagaag tataaaagta agaacagatg atggggttca ttttactcca agtggcgcaa
     7261 gagaaatgtc taaactttta ttagaacaca taaaacttaa ggaagaaaat gctagtaaat
     7321 aaatttaaaa ttatcttatt gttttttatt atttttacta gctcttatgc acaaaattta
     7381 aatacaaatg acacaataga ttccatactc aatcaaaaca aaaatcactc tgctttaaca
     7441 agttatgtat taaaaaaaga tcttaaaaat ctagaaaaaa aattagaaaa aaatcaaaac
     7501 ataggaatta gaatttatgg ggattctcat atggcggctg atttctttcc gcgtgtcata
     7561 agaggatatt taatccgttc taactctata ggttttgcct atcctttaca gcctaaatat
     7621 caacaaaatc ttaatcttgt ttattcttat aaaaactttg aaattttaaa ctcaagaaat
     7681 cctgctaatg ctggacataa ttttccacta ggtgggataa tagccaaagc aaaaactaaa
     7741 ggcgcaaaaa tcaaccttga tacaacccta gataaaaaaa atttcaaaat aggattttta
     7801 tttaaagcca agcaaaatac caatgctttt agcatcaaag atgcaaaaaa tcaaagctat
     7861 gagttaagaa ctacacaaat taacaaatgg tcttataaag aactagaact tgatcttcct
     7921 ttgcaaattt cagccttaca aaaggatgct gaactaggag gatatttcat cacaaataaa
     7981 gataataatg ttttcttaga taccattgca atcaatggtg ccaaaagtga tttatggctc
     8041 tcttggaatc aaacagttgt aaaaaaagaa ctaggacttt tacacaatga tttaattatt
     8101 cttgcctatg gttctaatga tgcactcttt aaagggtttg aaaaacaaaa attcaaaaat
     8161 aatttaaaaa aatggattag tattttaaaa acttacaata aaaacgctgt tatcatgcta
     8221 atctctccac caactgtagt tcaaaaacaa ggtaaaaact acaagcttgc tcctgatttt
     8281 tttaccatac gcaaagcatt atatgaagtt gctaaagaag aaaaaactct tatttttgat
     8341 atacatcagt ttatgcaaga tagtggggga aaaaacaaat ggatagaaca aaagctttcg
     8401 ctcaatgatg tacatcttac tataaaaggc tatgagctga tggctaaaaa gttactcgag
     8461 gatttaaaaa atatcattga ttattaaatt taatacttag gaaattctaa gttttcatca
     8521 ttaaaactta aagctgtgat ttgatagtaa gaattaatgg tttttaaaag attaaatcta
     8581 gctcttaaaa attcttgctg ggtagaattt
//
LOCUS       DARGBD010000073         8434 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.073, whole genome shotgun sequence.
ACCESSION   DARGBD010000073 DARGBD010000000
VERSION     DARGBD010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8434
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.073"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            44..415
                     /gene="exbB"
                     /locus_tag="SFZ04_001342"
     CDS             44..415
                     /gene="exbB"
                     /locus_tag="SFZ04_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HEG8065601.1"
                     /translation="MAFIAFWCVVERMLFFRKINFKNYENQEQFDDAISENLTTIYII
                     YSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIIVGLSLALKATALGLLVAIPALMA
                     YNALLRKVSLLSNAYKANKNA"
     gene            408..797
                     /gene="exbD"
                     /locus_tag="SFZ04_001343"
     CDS             408..797
                     /gene="exbD"
                     /locus_tag="SFZ04_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HEG8065602.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            794..1476
                     /locus_tag="SFZ04_001344"
                     /pseudo
     CDS             794..1476
                     /locus_tag="SFZ04_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
     gene            complement(1489..2358)
                     /locus_tag="SFZ04_001345"
     CDS             complement(1489..2358)
                     /locus_tag="SFZ04_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065603.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYTNYVARNDGSIRLNGEANQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2362..2523)
                     /locus_tag="SFZ04_001346"
     CDS             complement(2362..2523)
                     /locus_tag="SFZ04_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065604.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2618..3601
                     /locus_tag="SFZ04_001347"
     CDS             2618..3601
                     /locus_tag="SFZ04_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HEG8065605.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3687..4775)
                     /gene="aroC"
                     /locus_tag="SFZ04_001348"
     CDS             complement(3687..4775)
                     /gene="aroC"
                     /locus_tag="SFZ04_001348"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEG8065606.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGIPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFGICVQSGVFGVGTFV
                     SNLKEKEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSYNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4775..5449)
                     /locus_tag="SFZ04_001349"
     CDS             complement(4775..5449)
                     /locus_tag="SFZ04_001349"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEG8065607.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5436..5876)
                     /gene="rnhA"
                     /locus_tag="SFZ04_001350"
     CDS             complement(5436..5876)
                     /gene="rnhA"
                     /locus_tag="SFZ04_001350"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEG8065608.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5863..6849)
                     /locus_tag="SFZ04_001351"
     CDS             complement(5863..6849)
                     /locus_tag="SFZ04_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065609.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKEHDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6919..>8434
                     /locus_tag="SFZ04_001352"
     CDS             6919..>8434
                     /locus_tag="SFZ04_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEG8065610.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPIKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEF"
BASE COUNT         3035 a         1444 c         1092 g         2863 t
ORIGIN      
        1 aaaagattac atcgatttaa ttatcttttt aattctagga attatggcat ttatagcttt
       61 ttggtgtgtt gtagaaagaa tgctattttt tagaaaaatt aactttaaaa attatgagaa
      121 tcaagagcaa tttgatgatg cgattagtga aaatttaacc actatatata tcatctattc
      181 caatgcccct tatataggac ttttaggcac tgtaataggc atcatggtta cattttacga
      241 aatgggcttg gcgggcaata tagatgtcaa atctataatc gtggggcttt ctttagctct
      301 taaagctaca gccttaggac ttttggttgc tattcctgct ttaatggctt ataatgcctt
      361 acttagaaaa gtttccctct taagcaatgc ttataaggca aataaaaatg cttaaactac
      421 caaaaaatga aggtttaaat atagtcccat ttatagacat tatgcttgtt ttgcttgcta
      481 tagtgcttag tatttcaacc tttattgcgc atggaaaaat tcaaatctca cttccttcaa
      541 gtgaaaatgc taccaatata agcaataatg aaaaaaaact tcttataacc atagacgaaa
      601 aaaatacttt ttatttaaat gacaaattag ctgatttaaa tgaagttcaa aatgctattt
      661 tttcacttga taaaaaaacc atagtagaac taaaaagcga taaaaatgct aaatttgaaa
      721 gctttgtaaa aattatagat tttttaaaag ccaaagaaca tgaaaatttt cagattctta
      781 ctgagaaaaa caaatgaaaa ctttattttt aaattataaa taccaagctt cttatataac
      841 ttttatagtc tttatacctt tgctttttgt cattttttac tcaaatgact tttttaaaat
      901 ggaaattaaa aatgaagatt ctttttcttt agcaataaaa caatttaccc aaactaatcc
      961 aacaaatgag accaaaccaa cagaatccat tatagaacct atcaaaccaa aacctcagcc
     1021 aaaagttatt aaaaaaactc ctgaaaaaat gcaaaaaaag ataaaaaaaa cacctccaca
     1081 cccaatacca aataaaaccc caatagcacc aactcaagaa gttaaaactt ttgcaaaaac
     1141 aactgataca aatgtcaaac ctaagatcac tcaattaaca caaggaaaag ataatcaccc
     1201 tgtattaaag aaatccaaaa agctatacaa caagcacaat tttatccaag gcaagcaaaa
     1261 aaaatgcgta tgcaagaaac tgtaaaagta gaatttttat ggaaagaaaa caaaacttta
     1321 gcagatttaa aaatcataga aagctcagga tatgatttat tagataaaag tgctttagaa
     1381 agcataagaa aagcttcttt aaattttcca cactataacg gagatttaag aattacacta
     1441 cctattatat atgattttaa aaccctaaga ggataaaatt ataatttgct acactctctt
     1501 atctacaatt tgtgcttctt gattttcaat tttattttga aaatctttac ttaaattctg
     1561 acttaattct tgcaaagatt tttgcttcag tttttcaaat tcttcaggat tgctagcctc
     1621 aagctttgct tgctcatcag cacttaaagc acttaaacct ttttcttgag ctttttgaag
     1681 caaatcttcg tcttcttttt ctttgatatt attttcctta tcatcttttt tattgatttt
     1741 ttgcggatct atggttttca tagcattagc tccaccacct gatgcttctt taatgtcgct
     1801 taaaatttct ctcatgctag gttctttaac atcactatca tcaactttac catctttatt
     1861 tacatcttta tcaataaaaa aatttaattt ttcttctata tttgcatcat cagatatttt
     1921 ttcatcgctt gttttaaagc ctaaattttg catactttgt tgaagggtgc ttgtattaaa
     1981 atttaatttt acactttgtt gtttattatt taaatttgaa tttaaagaac caaaattatc
     2041 ttttacactt tcaaaccaat ttgaaacaaa ttgatttgct tcgccattaa gccttatact
     2101 accatcattt ctagcaacat aattcgtata agaaccgaaa tttttttgta aactactata
     2161 attttcatcg cttaaattta aagctataag ttcaccttgc ttattttcaa aaacaacctt
     2221 aacaccatcg ctatttaaac tcgaaagatc ttgcacggga attttatctt gatcttcttt
     2281 ttttaatacg ctaagctctt ttttatcaac attattagtt aaagaatggg ttaaactagc
     2341 agaagtatcg attttcatta tttatccttt tttacatttt gcaaataagc ctaaacgaca
     2401 catttttctc tcatgtgaat tttttaaaga attacacttt ttaagttctt gctcgtagtt
     2461 agcacaagaa tttgcaaaag caaaagaact caaaatgctt aaaaccaaaa ttatttttaa
     2521 cactttccaa tccttatttt aaagattttt tagttaaaat tatacctttt ataatcgaca
     2581 aaatcttaaa aaactttata atctcagaaa ggaatcaatg aaagcattag ctctttttag
     2641 cggtgggctt gatagtatgc ttgcaatgaa actcatcact gcacaaggca tagaagttaa
     2701 agctctaaat atcaacatag gttttggaag cacaagtgat aaaagcgaaa tcatgaaaaa
     2761 gcgtgcagcg atggtaggtg cggattttga aatgatagat gtaagaaatt cctatcttca
     2821 agaagtgctt tttaatccac aatatggcta tggcaaacat tttaatcctt gtatagattg
     2881 tcatgctttt atgtttaaaa ctgctcttgc tatgttaaaa gaagaaaatg caagttttat
     2941 catcacagga gaagttttag gacaacgccc tatgagtcaa agaagtgatg caatggcaaa
     3001 ggttaaaaaa cttgctcttg atgaagaaga tttaatcttg cgtcctatgt gtgcaaaaaa
     3061 cctacctcta accaaacctg aaagagaagg ttgggtagat agagaaaaac tcgaaggtat
     3121 tagcggaaga agtcgtaaaa gacaacttga acttgcagct aaatttggat tagaagactt
     3181 tgaaagccca ggtggaggtt gtttgctaac tcttgatagt tttgctaaaa aaattcgaga
     3241 tttcatagaa tttgacaaag atatgcaggt taatgacgca caacttttaa aatatggtcg
     3301 tcatttaaga ttacccaatg gagctaaaat gatcataggt agaaatgaac ttgaaaatac
     3361 tcttttaaaa ggtttaaaaa ctcctaaata tgaagtaata gaacttggag atttaatcgg
     3421 agcttactct ttggtagatg aaaaaatttc agaaaaagac ttagaacttg ccttaaaaat
     3481 agcccttacc tatactaaac acgaagtagg aaaaagctat gaacttaaat ttaaaaatca
     3541 agcttataca agtatagctt ttgaaaataa ggctgatatt aatcaatttt ttattagtta
     3601 aagtataaag tatttagcaa aacaagcgat atagtatttg aatcttttca aaatattgca
     3661 atcaagccca tgaaaatggg ctttttttat tttaatccat aagcattttt taaattgttt
     3721 aaattcgcac tcgcattcaa aagcaaacaa tcagccaaaa ctaaacgcac catagcacta
     3781 gctacaacac ttcctctaac acctacacaa ggatcatgcc tacctttgag ttcaaattcc
     3841 aaattattgc caaatttatc tatactttct tgcttggcaa aaatagaagg agtaggttta
     3901 aaataagttt ttaaaataag attttctcca tttgaaattc ctcctaaaat tcctccacta
     3961 tgattgctta aaaacttgcc atcttttaaa gcatcattat tatacgatcc gcgcattttg
     4021 cttgcattaa taccttcgcc tatttcaact gctttaacag cattaattcc cattaaagca
     4081 tgagctaatt tagagtctaa cttatcataa agaacttctc caagtcctat aagcatacca
     4141 ctaacttttg taaaaacagc agcgcctaca ctatcttttg aatttctagc atttaaaatt
     4201 tcatttttaa agtcactttc tagttttgga tcaaggcaaa aaatttcact tttcttagca
     4261 aattcaaaat caaattcttt ttctttcaaa tttgatacaa aagttcctac cccaaaaaca
     4321 ccactttgaa cacaaatgcc aaattcacgc aaaagcatcg ctgcaactgc accaccagcc
     4381 actctagcaa cactttccct agcacttgat ctacccccac ccctatgatc tcttatgcca
     4441 tatttataaa aataagtaaa atccgcatga gcaggacgaa atagatcttt taaattatca
     4501 taatccttag aatgggcatt ttcattaaaa accactatag ctatgggatg acccgttgta
     4561 tatccttcaa aaaccccgct taaaacctga gctttatcgc tttcttttct tggtgttgca
     4621 aatttacttc cgcctttgcg tttatcaagc tcattttgca aaaattcttc atcaaattta
     4681 actccagcag gtattccatc aataatacat ccaacagcca caccatgaga ctcaccaaaa
     4741 cttgtaaatt tcaatctcgt accaaaggta ttcactataa agctcctaat ttctcaagtg
     4801 caatttttgc tgccatttgc tgtgcttctt ttttgcttcc tgcaatagct cttgcaagtt
     4861 ctttaccatc aagcattaaa gcaatttcaa attgctttaa atgatcaggg ccaaaagcac
     4921 gcactgtttc atactgcgga gtttgtccga tttttccctg tgtaatctct tgtaattttg
     4981 ttttataatc ttttataaga atttttgcat caatttgagg gaaatttttt tctataagcc
     5041 ttaaagcaat agtttttgca aactcgaacc cagcttctaa atgtatagca cctataatgg
     5101 cttctaacgc atctgaaagt atagaaggct tttcttttcc tccattgttt tcctcagcaa
     5161 cactcataag aataaaatcg cccaaattta aactatttgc aatttttgca aaagactttt
     5221 cattcactaa agctgctcta agcttagata aatctccttc agcatctttg gcgaatttat
     5281 gaaaaaggta ttcacctaca actaaatcaa gcacggcatc acctaaaaat tccaagcgtt
     5341 cgttgttgta agatttttta aaacttttat gggttaaagc atgtataaga agatttttat
     5401 ctttaaattc ataagttaaa ctctgctcta gcttttcaat gtttttcatc attttccctt
     5461 gcaattttca aagcagcttc acgcgccaat gtatcacacc tttcattttc caaatgtcca
     5521 ttatgtgctt ttacccaaaa agccttaatc ttatgagatt ttgccacttt aatatattcc
     5581 ttccataaat ctatattttt tttaccttta aaatcctttt ttatccatcc ttctagccat
     5641 tcattaatac tttgaaccat tagattagaa tctgtaaaaa gcgaaatttc acaaggctct
     5701 tttaaagcct tcaaagattc aataattgcc attagctcca ttctattgtt agtggtatta
     5761 gcctcagctc caaaaccttc cttttgatac tccttataac gcaaaatata agcccatccg
     5821 ccaaaacctg gattattaag acatgagcca tctgtataaa tttcaatgtg tttcattgtt
     5881 tttcacttca taaataattt tacaagtatt aaactcataa caaacaggac agtgataaaa
     5941 aaacaaaggc ataacatttt tacactcaga acaacggtat gaaaattcta accccgcatt
     6001 aaaagaatta tcttttaaaa tttttaacat tttaaaatta gaatttttaa aaacaaactg
     6061 atgcgtatca tcatgctttg aaattttacc caaagcataa aagaattcta aaaaatcttg
     6121 attttctaaa ttaaacgctt cattttctct ataaagcaaa tcacaaatat caaaaaaatt
     6181 ttgccctaaa aacatatgat atttttcaaa aactaaacgc cctaacatag gattatcttc
     6241 tattttaaat tctaaaagtt ttttcttttt ttcttcatca gtgatattaa aagtacaaag
     6301 ttctaaagct ttgataaaat catgctcttt ttgcacatct tcattaagct caaaaagaca
     6361 ttctaaaagt tctaaatttt ctttataaga acgaagtttt aaataaacaa tttttaaaag
     6421 ttttaaggct tgtatatttc ttggacgcag ttttaaagct tgtaataaaa cttcttttgc
     6481 acgctctaaa aatcctgctt taaaataaac ttttgctaaa gaaaggaaaa taaattctct
     6541 ttcttgttta tctttacatt tttcaagagc aatcaaataa atttgagttg ctttttcaaa
     6601 ttccccactt ttggtaaaaa tttcggccaa aaaacttaaa tttccaaaac tcaagctact
     6661 atttcttaac aactctttat gagcgttatc catttcaaat ttttttataa atttttcaag
     6721 cttttgttct tcatctttgt tagcaaatat tttccaaata taatttgcaa cagctacaac
     6781 aaatactaaa atggttaaaa ttataagccc tactaaaggg tctctgtatt ctacaaagaa
     6841 aaaatccata gtctcgctct aaaaatttta tgccaaatta tagccaaatc tttgtataat
     6901 tttaacaagg tttgtaaaat gataactaaa gaaagtatag aaaatttatc ccaaagactt
     6961 aatattgttg atattataga aaattatatt gaagtaaaaa aacaaggctc tagttttgta
     7021 tgtatctgtc cttttcatgc agataaaaac ccgtctatgc atatcaatcc tatcaaaggt
     7081 ttttatcatt gttttgcctg caaggctggt ggagatgctt ttaaatttgt aatggattat
     7141 gaaaaattaa gttttgctga tgcagttgaa aaagttgcaa gccttagtaa ttttactttg
     7201 agttatacaa aagaaaaaca agaaaataaa aaagagctaa agtctatact accaagctta
     7261 aatgcgtatt ttaaagataa tctcaaacac cacaaagaag ttttaaccta tctttaccag
     7321 agagctttaa atgacaaaga tatagccaaa ttcgaattag gttttgcagg agcaagtgaa
     7381 gatagtataa gattattgca aaatcaaaaa attcctttag aagatgctat gagtgttgga
     7441 gctttaaaaa aagatgaaaa taatgaattt tacgcaagtt ttatatggcg tatcaccttt
     7501 ccaatctacg atcataaaga cttattggta gggtttggag ggcgcacttt aaatcccaat
     7561 gtaccggcaa agtatgtaaa ttcaccccaa aatatacttt ttgataaaag tagaattttt
     7621 tatgctttta acatcgctaa agaaaatata gccaaaaaaa aagaaataat agtatgtgaa
     7681 ggctacatgg atgcaatagc ttttcacaaa gcagggttta acaatgctgt agcagttctt
     7741 ggaacagcat taaccgaaca tcatctaccc ttaatccgcc gttatgatgc aaaagtgatt
     7801 ttatgttttg acaatgatga agcaggatta aaagctgcga cacgatctgc atttttatta
     7861 agcacaaaca aaatagacgg taaagtggca attttgcaag gcggaaaaga tcctgctgag
     7921 ctcgtagcaa aaaatgaaag cacaaaactc cataatatac tcgatgaagg aatagagctt
     7981 ggtgaatttt atatcagacg cttaatatcc actcattcca taatttctgc tcttgataaa
     8041 caaaaagctt tagaaactat acaaaaattc acctttaatc ttgaaccttt agtggcaaat
     8101 tcttacacta gtctagtttc aaatttatta aaagtggatg aaaaatttat tgtcttatca
     8161 caaaattcaa aaaaaaccat acaaacccct ttaatttctc aaaataaata caattttcct
     8221 aaagaaaaaa ttcacattgc agaattagaa cttatagcct ttttaaaaca gcatccagat
     8281 atatgtaacg attttaagca aattagtgat agtgtttgtt ttaaacataa gattttattg
     8341 gataaaattt tagaaaaaaa aggttatgaa gatagtgata ttagagaatt tgaaagtaaa
     8401 aatattcgaa aaaatttaaa ctatagcgaa ttct
//
LOCUS       DARGBD010000074         8288 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.074, whole genome shotgun sequence.
ACCESSION   DARGBD010000074 DARGBD010000000
VERSION     DARGBD010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8288
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.074"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            11..814
                     /locus_tag="SFZ04_001353"
     CDS             11..814
                     /locus_tag="SFZ04_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEG8065611.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKHYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLILLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLVHLIGKFLKR"
     gene            complement(803..2134)
                     /locus_tag="SFZ04_001354"
     CDS             complement(803..2134)
                     /locus_tag="SFZ04_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HEG8065612.1"
                     /translation="MNSTFSIIEYQAFSKEDLKEIFKEKAEGFYKELEDFAKNNENLL
                     GFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLKRYYELDN
                     ISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFLDE
                     FDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKQNFIHKERFFTSNDEFVLDIAPNR
                     LIKSTLNFLKSKTSLNKFRLIKAMQMLDEVEFSKNYEKDFSYKISRHFDYYENLLLWC
                     KIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPAQDIKVQNNGKYLISK
                     NDENCFMLKPDLYIENKMILDTKWKIPNDSENEKKQGIEQSDLYQMFAYACKFKIYDI
                     KLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVFFAPLPF"
     gene            complement(2131..3903)
                     /locus_tag="SFZ04_001355"
     CDS             complement(2131..3903)
                     /locus_tag="SFZ04_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8065613.1"
                     /translation="MLENKCDWKISKADQNGNVYYYFPKDEDEFKEAVVKNGGMSVYV
                     YQEGKFIDEFHTKSQGDKWTSSILNYLKTMSKDGEIFYRYYKNCKFFAIPKNTFSKDD
                     FKIIKDNINNNISLNQILYGSPGTGKTYHTIDKALEILGENLESRDEKKAKFDEYVKN
                     GQIVFTTFHQSYGYEEFVEGIKPSLNSDENSQINYKVKDGIFKELCKKALENRDDIES
                     FNFYINDLKEKTKEDANNPEKYFQLPNTKYSIQYRGGKTFRIKFDDMSKNHKDYPVSI
                     DNIEKLYKTSNIDEIYNSAYVKAILNYLKSQGLKDYKEKDEKINLPYIIIIDEINRGN
                     VSKIFGELITLIEPSKRLGNEEALELTLPYSGEKFGVPKNVYIIGTMNTADRSITSLD
                     TALRRRFEFVEMMPNSDLLNNVFICKDVENPNEDEDYLGDDAKTEGYAEILQNILISI
                     NKRIEFLLDREKTIGHAFFMSEAVKFNKNNWIKPDEYEEDWYVLSISKLKKVFQNKII
                     PLLQEYFYNDYALINEVLNDNGMIFEDKKDDKYLQKIKNLDSVNSERSIYNIASFDDK
                     IWDKIEIYQAIYNDEIANKLKKRK"
     gene            complement(3960..4382)
                     /gene="rimP"
                     /locus_tag="SFZ04_001356"
     CDS             complement(3960..4382)
                     /gene="rimP"
                     /locus_tag="SFZ04_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEG8065614.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGKKIYRIYVQKEGGVNLDDCA
                     KLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELAKITTNEKEKIE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFIQW"
     gene            complement(4372..4734)
                     /gene="rbfA"
                     /locus_tag="SFZ04_001357"
     CDS             complement(4372..4734)
                     /gene="rbfA"
                     /locus_tag="SFZ04_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEG8065615.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            complement(4731..7346)
                     /gene="infB"
                     /locus_tag="SFZ04_001358"
     CDS             complement(4731..7346)
                     /gene="infB"
                     /locus_tag="SFZ04_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEG8065616.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERS
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCM
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            complement(7333..7590)
                     /locus_tag="SFZ04_001359"
     CDS             complement(7333..7590)
                     /locus_tag="SFZ04_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEG8065617.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            complement(7615..8262)
                     /locus_tag="SFZ04_001360"
     CDS             complement(7615..8262)
                     /locus_tag="SFZ04_001360"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEG8065618.1"
                     /translation="MFQNNIPLSRGLGSSSAVIVGAIASAYYMSGFKVEKERILDEAL
                     IYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLAAVVVIPNLAMSTEQSRQAL
                     AKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKLHEINRMKNLPELFEVQKFA
                     LENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKDFRVQYLEFDDNGFEIC"
BASE COUNT         2429 a         1510 c          988 g         3361 t
ORIGIN      
        1 aaggaaaata atgcttgaaa ttttaaattt cacctttttt caaaacgctt tactaggagc
       61 gattttagtc agtatagctt gtgggatcat aggcactttg gtgatgataa atcgcctttt
      121 ttctatggct ggaggtataa cacatggggc ttttggtggt ataggtatag ctttttattt
      181 ctctttgcct attttattaa gcacgggaat atttacttta tttttggctt ttttagtagc
      241 ttttttagct aaacactatg aacacagaag tgatagtatt atcgctgtaa tatgggcttt
      301 tggaatggct gttgggatta ttttaatcga tttaagccct agttataaca cagatttaat
      361 ggcttatctt tttgggagca ttttggctgt aggaacacaa gatttatggc ttatggcttt
      421 ggttgatagc gtggtggtgc ttttaatttt attattttat agacaatttg aagcattaag
      481 ctttgatgcg gaatttgcaa aagttcgtgg tatcaataca agtttttttc attatctttt
      541 aatcgccctt atggcttttt gcatagttat ttccatacgc cttgtagggc ttattttagt
      601 tatggcttta cttagtatcc caagctttat tgctgaaaat tttaccaaaa gacttggctt
      661 tatcatgatt ttggcaagtt ttttaagtat gattttttgt gttttaggac ttatacttag
      721 ttattatctt aatctctcaa gcggtgcttg catcatagct gtagcttgct ttggtttttt
      781 agtgcatttg ataggcaaat ttttaaaaag gtaaaggtgc aaaaaatact tggactttta
      841 tatctttttg cccttgttct ttaaaataca aatgttcgct tgctttaaaa acaaaaaatt
      901 tttctgcgat ttttctttgt aaatcttgag ttttttcaca taaaggatac acaagtttaa
      961 tatcataaat tttaaatttg caagcataag caaacatttg atacaaatcg ctttgttcta
     1021 taccctgttt tttctcattt tcactatcat ttggaatttt ccatttggta tctaggatca
     1081 ttttattttc tatatataaa tcaggcttta acatgaaaca attttcatca ttttttgaga
     1141 ttaaatactt tccattgttt tgaactttaa tatcttgagc tggatttact ttttttagca
     1201 tataagctac ataatcttca aaaattttct ccataggaaa aagcaaagca aaagcttcat
     1261 ttttaccatg ataaggcata aaactttcat tttttaagaa aattttacac cacaaaagca
     1321 agttttcata ataatcaaaa tgtcttgaaa ttttatagct aaaatctttt tcataatttt
     1381 tagaaaattc tacctcatca agcatttgca tggcttttat aagtctaaat ttattcaaac
     1441 ttgtttttga ttttaaaaaa tttagcgttg attttatcaa acgattgggt gctatatcta
     1501 aaacaaactc atcgttgctt gtaaaaaatc tttctttgtg tataaaattt tgcttgatat
     1561 gctcgttaaa tagtaatttt ccctttaaaa aagccctatt ttcttcgcaa cttagataag
     1621 atctcatcaa gcctttttta tacacgctat caaattcatc taaaaacata gtgataaaca
     1681 cttcaaataa aggaatttta gaactttgca aagatgaaat ttgtgatttt ttaaaggggg
     1741 agttttttaa ggtttttagc atatttatca aaagattttt aggattaaat ttaaaatctt
     1801 tttcataaaa atcattattt ttagaaatat tgtctaattc atagtatctt tttagttttt
     1861 ctttatcgtg atttgaagaa ctatcttctt ttttataact atctaaattc gtgcattttg
     1921 gcaaaatctc caaaaccccg cttttagtct gtataatgcc gacataattt ttagctttta
     1981 aggaattttt gtttttaaag cctagaagat tttcattatt ttttgcaaag tcttctagct
     2041 ctttataaaa cccttcggcc ttttctttga aaatttcttt taaatcttct ttagaaaaag
     2101 cttggtattc gatgatggaa aaagtgctat tcattttcgt ttttttaatt tatttgctat
     2161 ttcatcatta taaattgctt gatatatttc tattttatcc caaattttat catcaaatga
     2221 agcaatatta taaatacttc tctcgctatt aacactatct agatttttta ttttttgaag
     2281 atatttatca tcttttttat cttcaaaaat cataccatta tcatttaaaa cctcattaat
     2341 caaagcataa tcattataaa aatactcttg caaaagcgga ataattttat tttgaaaaac
     2401 tttttttaac tttgagatac ttaaaacata ccaatcttct tcatattcat ctggcttaat
     2461 ccaattattt ttattaaatt taacagcttc actcataaaa aatgcatgcc ctatagtttt
     2521 ttctctatct aataaaaatt caattctttt atttatactt attaaaatat tttgaagtat
     2581 ctctgcataa ccctctgttt tagcatcatc tcctaaataa tcttcgtctt catttggatt
     2641 ttctacatct ttacaaataa aaacattatt aagtaaatca gaattaggca tcatctcaac
     2701 aaattcaaat cttcttctta aagctgtatc aagagaagtt atgcttctat cggctgtatt
     2761 catagtgcct atgatataaa catttttagg cactccgaat ttttcaccac tataaggcaa
     2821 agttaattct aatgcttctt catttcctaa tctcttacta ggctctatca aggttataag
     2881 ctcaccaaaa atcttactta cattaccacg attgatttca tcgatgatga ttatataagg
     2941 taaatttatt ttttcatctt tttctttata atcttttaaa ccttgtgatt tcaaatagtt
     3001 taagatagct ttaacatatg ctgaattata tatttcatct atattagaag ttttatataa
     3061 tttttctata ttatctatac ttactggata gtctttatga tttttgctca tatcatcaaa
     3121 tttaattcta aatgtttttc cacctctata ttgaatagaa tattttgtat ttggcaattg
     3181 aaaatatttt tcaggattat tggcatcttc ttttgttttt tctttcaagt catttatata
     3241 aaaattaaaa ctttctatgt catctctatt ctccaaagct ttcttgcaaa gctctttaaa
     3301 aattccatct ttaaccttat aattaatttg cgaattttca tcactattta aactaggctt
     3361 tataccttct acaaattctt catatccgta gctttgatga aaagtagtaa atactatttg
     3421 tccatttttt acatactcat caaatttagc ttttttctca tctctacttt ctaaattttc
     3481 acccaagatt tccaaagcct tatctatagt atgataagtt tttcctgtcc ctggagaccc
     3541 ataaagaatt tggtttaagg atatattatt atttatatta tcctttataa ttttaaaatc
     3601 atctttagaa aatgtatttt ttggtatagc aaaaaatttg caatttttat aatatctata
     3661 aaatatttct ccatctttac tcatagtttt taaataatta agaatagaag aagtccattt
     3721 atcaccttga ctttttgtgt gaaattcatc tataaattta ccttcttgat aaacatacac
     3781 actcataccg ccatttttta caactgcttc tttaaattca tcttcatctt ttggaaaata
     3841 ataatacaca ttaccatttt gatctgcctt acttattttc caatcacatt tattttctaa
     3901 cattgcatgc cttttgattt tttgttttta ttttaattat ataaaaaaaa tctaaatttt
     3961 taccattgta tgaaggttct agcttttttt atatcattaa aatttatagt agttttttct
     4021 ttattttcta aattttctaa agtgatattt tcatcatcta cagcaatgat ttttgcttcg
     4081 attttttctt tttcattggt tgtgatcttc gcaagttcac ctatactttt tgcaaaatgt
     4141 tctatcttac tcagttttct ttcaagtcct ggtgaagata cttctaaaaa atactcccca
     4201 tttacaggtg gttctacatc aaaaataggc gataaaattt cactaagctt tgcacaatca
     4261 tcaagattta ccccgccttc tttttgcaca taaattctat aaattttttt accattttca
     4321 cttactagct catcatcata aaagctaagt tctgcttctt tgcaaagggc ttcaagattc
     4381 atttttatcc ttttttattt tttcaaaaag tgcgtccata tggttttgat actcaagcct
     4441 atcatcaaat ttaaaatgaa aattcggaca cctataccag ccctgctcgc tcatgcaata
     4501 attttgcaaa gctctacttg ccttttttaa agaagataaa attttttctt gctcatgaac
     4561 attaaaaaac attttatcaa gatacacaaa agcatcgtat ctgccttttt tacactctac
     4621 atccactaca cacaaatttt tcaaattttc atcatctaaa tttgctaaag cttcagggat
     4681 cagctctttt aagatacttt cagtgcgtag ttttttaatc tcacttgggt tcatagactt
     4741 gcttgttcct ctacttcttt atagctttct atataatcac ccactctcat atcatcgcac
     4801 ccttctatac ctacgccaca ttcatagcct tttgccactt ctttagcatc atctttaaag
     4861 cgtttaagtg agcttacatt tccctcataa accacaactc catcacggat aaggcgaatt
     4921 ttagccccac ggttaatcac cccttcggtt accatacaac ctgcaatttg tccgattttt
     4981 ggcacattga tcacttgtct aatctctgct tgtcctaatt gctcttcaga aataatcgga
     5041 ctcatcatac caccaagcaa ggcttttaca tcatctaaaa gattataaat cacattataa
     5101 gttttaattt ctacgccttt atctttagaa cgctctttaa cttcccctgt tgggcgtatg
     5161 ttaaaaccta gtactataga gttttcactc gcacttgcaa gctctatatc actttgcgtg
     5221 attcctccta ctccactatg aatgatattc actttaatct catcatttct aagtttttct
     5281 aaacttgcct ttaaggcttc taaagatcct tgcacatcag cttttaaaat aacaggcaag
     5341 gcttttagat taccttcttt gatcttagct ccaagctcat caatgctaac tttagtggat
     5401 ttgctaagtt ctttttggcg attgtattcg tggcgtttat tagcatattc tcttgcttct
     5461 ttatcggttt ttactgcgat taaaatttca cctgcatctg ctacttcact aagccctacg
     5521 ataaccccac attcgcctgg tttaatttct tttaaggctt taccttgatc atcgctcatc
     5581 gcacgcactt ttccataagc ctcgcctgca accacggtac ttcctacagt aagtgttcca
     5641 ttttgcacga tgatagtagc caccgcacca cgcccttttt gcacagaact ttctataatg
     5701 cttgctttag caaaactttt tggattggct ttaagttcta aaatatcagc ttgtaaaagc
     5761 acgatttcaa gcaaatcttc aatccccatt cctgttttag ccgaaactcc tacaaattca
     5821 taagatccgc cccattctac tggcatgatt tccatttctg cgagttgagt ttttaccata
     5881 tcgggatttg ctgcttcttt atccatttta ttaatagcaa taataatagg cacacctgct
     5941 gctttagcat gatttatcgc ttctttagtt tgtggtttta ccccatcatc tgcggctaca
     6001 acgatgatta caatatcagt gatacttgca ccccttgcac gcatagcagt aaaagcttcg
     6061 tgacctggag tatcaataaa agtaatttta cgtccatttt tttctaccat ataagcaccc
     6121 acgtgctgag taataccccc tgcttcacca cttgcaacgc gtgattttct aatataatct
     6181 aacaaagaag ttttaccatg atcaacatgc cccatgatgg taatcacagg tgctctagtc
     6241 actaaatctt tttcatcagt ctcttcttca tagtctttta cataatcaaa ctcatcagcc
     6301 tcgttaatga tattgatctc tataccaaat tcagcagcca aaatttcaat cgcatcttca
     6361 tccaagaaat cattttttgt tgtcatcatt ccaagcatga aaagttttga aatcacttca
     6421 ctagtgcttt ttcctatctt atcagcgaat tcatacacac gaatttcttt agaaatagca
     6481 acgctaccta cttcttctac ttcctttttt tcaatctttt tagatggttt tttacgactt
     6541 cttctttgaa ttccaccttc aagcccaaaa cccgcagaat ttccaacagc ttgtcttata
     6601 aaattaggtt gttttttatt gatattttgt ggtttttctt gttcttttac actaaaatca
     6661 ggtaatacta cctcatcttc atcatctaaa gaaatatcac caaaatcatg ttcatctaaa
     6721 aaattcattt tttcggtact ttctttttta ctcgcaacaa aagatttttt ttcttttttc
     6781 tttttcttta aactctcatc agcatttgaa aacatagttt ttaaacttaa gcgctcttca
     6841 ttattgatag atatatcatt tgaatttttt acttcttctt ttttaacttg aatttcttct
     6901 tcgtcttttt tctttttaac aataacaagt ccgcgtcttt tggctaaagt tgcactagca
     6961 aggctttgtg gcttatgagc atcaataatt tcttgttttt cttcctcttt tgcattttct
     7021 ttttcaattt ttaattcttc ttttttaact tcttgtttaa gcttttcttc ttttttaggt
     7081 tctttttttt cagattcatt tagcttttct tgttctttta tattttcttt tttaggcttt
     7141 tttgccgtag gagttttgat atttttctta aaagcttctg gaatttctct tgtttgtata
     7201 tactcataaa tagctgccgc aatctcaggt tctacagcat ttgatgctgt tttaattcca
     7261 agtcctaatt catttgcctt ttcaataatt tccttactat cataacctaa ttcttttgcg
     7321 atttcatgaa ttctaatctt tgccatttaa aaatatctcc ttaagtcctt gctgagtaat
     7381 tttagtattt aaatttttac atattttaga aaatgctttt tgtaagactt tatcttctct
     7441 ctcaatacaa ttttgacata aatatccgct tcttccatgt tccgctttag gcacaatatc
     7501 tcctaaaaca actttaaatc taaataacat attttgctca aagcggtttt tacacactat
     7561 gcacattcta attggtatat gttttttcaa aattatatct tttttttata ttttttagca
     7621 aatttcaaag ccattatcat caaattctaa atattgcaca cgaaaatctt taaattttgt
     7681 ttgtattttc tttgctaaag ctaaagcatc atctttaaaa gctaaagaaa aaaagctcga
     7741 tcccgaacct gaaagtgtgc tcattaaagc tttattttct aaggcaaatt tttgcacttc
     7801 aaaaagctcg ggtaagtttt tcatacgatt gatttcatgg agcttatctt gacttgcaaa
     7861 ttttaaaaat tcatattttt tctccaaaaa acaagcggtt aaaaatgaag catgagaaag
     7921 gttgaaaacc gcatcattaa aacttaaatt tttggccaaa gcttggcgtg attgttccgt
     7981 gctcattgcc aaatttggga tcacaaccac agcagctaaa tctttatcaa tctctttttt
     8041 gatactataa actttatttt tttcaaccaa agaacacaca aaaccaccaa gagtagctgg
     8101 agcgatatta tctggatggt tttcataaat taaagcttca tctaaaatac gttctttttc
     8161 taccttaaat ccactcatat aataagcact ggcaatagct ccaacaatca cagctgaaga
     8221 gcttcctaat cctcttgaaa gaggaatgtt attttgaaaa ataaaacgaa aattatcttt
     8281 ttttccgc
//
LOCUS       DARGBD010000075         8197 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.075, whole genome shotgun sequence.
ACCESSION   DARGBD010000075 DARGBD010000000
VERSION     DARGBD010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8197
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.075"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(18..1265)
                     /locus_tag="SFZ04_001361"
     CDS             complement(18..1265)
                     /locus_tag="SFZ04_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8065619.1"
                     /translation="MIVSKAYEIDSCDDVELGIKRESKLEFKLWYDDEKTPEALVFVV
                     QGVGADCNDVYLKFIVEYLLKNFNLAFVGVNYHCIGNRPQTGSTFYLDDIDKLILKAS
                     CEAADIKLPYDVDKIQDYKQMSEIFHFVNNQMVEGKQKGNFTPNYFLNLHVSLQPAKN
                     EYQNFGIMQAQDLLNVALYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLV
                     DGVIDNSSGAKFLWRVVGFGKEIDFMQYSEFATFDFFHHIKTHCSTKTFWTSNSSSPR
                     FFSPARRKIRNLLEEDHLLEQSKCLKTCFISYHSLYDEYVSLKEKTMLYKELEKLGFD
                     ATLHSITKESQVDGKFIKNLNHGMGIPVKLLIKKELPLMLEKIKQNPKKDCKEKYISY
                     PCEDLLYKFSEKDDKILLKIDKI"
     gene            complement(1265..1780)
                     /locus_tag="SFZ04_001362"
     CDS             complement(1265..1780)
                     /locus_tag="SFZ04_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG8065620.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSNFNGIKEVNFRVGDDKECLKLVF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(1781..2788)
                     /gene="tsaD"
                     /locus_tag="SFZ04_001363"
     CDS             complement(1781..2788)
                     /gene="tsaD"
                     /locus_tag="SFZ04_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEG8065621.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDANLEPLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKYSKELAFSFSGLKNAVRL
                     EILKHENLNEDTKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNINLKLAPLKFCSDNALMIARAAVDAYEKKEFVSIEEDILSPKNKNFSR
                     I"
     gene            complement(2785..4179)
                     /locus_tag="SFZ04_001364"
     CDS             complement(2785..4179)
                     /locus_tag="SFZ04_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HEG8065622.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFANISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINKELEVKLFDDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDSNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHGKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            complement(4181..5251)
                     /locus_tag="SFZ04_001365"
     CDS             complement(4181..5251)
                     /locus_tag="SFZ04_001365"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEG8065623.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     KYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            complement(5248..5973)
                     /locus_tag="SFZ04_001366"
     CDS             complement(5248..5973)
                     /locus_tag="SFZ04_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEG8065624.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSLTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVTLL"
     gene            complement(5982..6320)
                     /locus_tag="SFZ04_001367"
     CDS             complement(5982..6320)
                     /locus_tag="SFZ04_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065625.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            complement(6322..7629)
                     /locus_tag="SFZ04_001368"
     CDS             complement(6322..7629)
                     /locus_tag="SFZ04_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEG8065626.1"
                     /translation="MKYTELLQLQTFFSRFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELCSSLDEENSLFLKALEY
                     RKRADVLFANLSVLKDYEREIKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYF
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            7691..>8197
                     /locus_tag="SFZ04_001369"
     CDS             7691..>8197
                     /locus_tag="SFZ04_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEG8065627.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVDKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFE"
BASE COUNT         2762 a         1447 c         1042 g         2946 t
ORIGIN      
        1 aggctcatta gatttcctta aattttatct atctttaaca atattttgtc atctttttcg
       61 ctaaatttat acaacaaatc ctcacaagga taagagatgt atttttcttt acaatctttt
      121 tttggatttt gttttatttt ttctagcatt aaaggaagtt ctttcttaat caaaagtttt
      181 actggaattc ccatgccgtg atttaagttt ttaataaatt ttccatcaac ttgagattct
      241 ttagtaatag aatgcaaagt tgcatcaaaa ccaagtttct caagctcttt ataaagcata
      301 gttttttctt ttaaagaaac atactcatca tataatgaat gataacttat aaagcaagtt
      361 tttaaacatt ttgattgttc taaaagatga tcttcctcta aaagatttcg aatttttctt
      421 cttgcgggag aaaaaaaacg aggcgacgaa gaattacttg tccaaaaagt ttttgtcgaa
      481 caatgtgttt taatatgatg aaaaaaatca aaagtagcaa attcgctata ctgcataaaa
      541 tctatttcct ttccaaaacc tacaactctc cataaaaact tagcaccact agaattatct
      601 atcaccccat ctaccaacca aggtgcaatc ttagctgcca aatgtgctaa atatccccca
      661 tgagaactac ctatcataat aactggtata ccccccccca tagtatcaaa aggagcatgt
      721 tttttaaggt aaagtgcaac atttaaaaga tcttgagctt gcataatccc aaaattttga
      781 tattcgtttt ttgcaggttg caaactcaca tgtaaattta aaaaataatt tggtgtaaaa
      841 ttaccttttt gcttgccttc aaccatttga ttatttacaa aatgaaaaat ttcactcatt
      901 tgtttataat cttgaatttt atcaacatca taaggaagct tgatatccgc agcttcacaa
      961 cttgctttta aaataagctt gtctatatca tctaaataaa aagttgatcc agtttgagga
     1021 cgattgccaa tacaatgata atttactcca acaaaagcta aattaaaatt tttaagcaaa
     1081 tactctacga taaattttaa atatacatca ttacaatccg cacccactcc ttgcaccaca
     1141 aacaccaagg cttcaggtgt tttttcatca tcataccaaa gcttaaattc aagctttgat
     1201 tctcttttta taccaagctc tacatcatca caagagtcaa tctcataagc tttactcact
     1261 atcattacat tccccctatt aaaagataag ttttactcgc taggttttta aaattttcat
     1321 tcttacttaa aatcacacaa gctttattac tagaagagct tgtaaagtct atattttcta
     1381 aatcttcatg gctttgattg gctgcgttga tgatagcatt tttacttgct tcattgcttg
     1441 aaattcccat gagtataaaa tcagctttat ttataaaaac aagttttaag cattctttat
     1501 catcacctac gcgaaaattt acttctttta taccgttaaa attactaaga tcaacatttt
     1561 caaccccgct tacattactc atcgttttta tagagcttaa atgatcattt tttaaagtat
     1621 aaatgcttat atcgttgatc aaagttttaa ggttatttaa agacttacta acttcagctt
     1681 catccttact tgaactcatt tttggtaaag caatagcggc taaaattcct aaaataacaa
     1741 tcacaaaaac aagttctaat atggtaaaag cttttttcat ttatatcctt gaaaaatttt
     1801 tatttttagg gcttaaaata tcttcttcta tgcttacaaa ttcctttttt tcataagcat
     1861 caaccgcagc tcttgctatc atcaaagcat tatcagagca gaattttaaa ggagctagtt
     1921 ttaaatttat attatatttt tgacataaat tttgcaaacg cgaacgcaag ttaagatttg
     1981 cactagctcc acctacaacg ccaaaatttt taaatttata aagattaaaa attttttcta
     2041 atttatccat gatatgatca caagctgtat tttcaaaggc ataagctatt tctgcttttg
     2101 tgtcttcatt taaattttca tgctttaaaa tttccaaacg cactgcattt ttaagccctg
     2161 aaaaactgaa agcaagttct ttagaatact ttaaaggtat attaaaagag atatttttaa
     2221 gtttggcgtt ttttgctaaa ttttctatga tgaccccacc aggataacct aaattcatca
     2281 ttttagccac tttatcaaaa ctttctccaa agctatcatc atttgtactt gctaaaggct
     2341 ctaagtttgc atcatcttta agataaagca ccatagtatg cccaccacta acaagtaaaa
     2401 ttcccatatc taaagaaatt ttttcttcca aaaaaagact ataaatatga cctttaagat
     2461 gatttatagg gattaagggt aaatttagag cacttgctaa ggtttttgcc atagaaattc
     2521 cactgagcaa agaaacgcta agcccaggtt catttgtcac agctatggca caaagatttt
     2581 taaaatgctc tttgcattgc ttaagtatct ttggcaaagc ctcgctatga agtcttgcag
     2641 caagttcagg caccactccc ccatagatgc tatgatctaa ttcttgggaa atttttttat
     2701 gaaatttaca ttctaaggta tttttatcaa tgatagctat agaactatca tcacaagaac
     2761 tttctatagc taggataaga tttttcattc aaattccact aaaatagaac ctaagaattt
     2821 atcttttgat cttgccattt taagagtatt taaatccaaa tttttagcgt ttttgatcaa
     2881 cttgctattg atatttgcct ctaaaagttg ttgcaaattt gcacctctta actcataaaa
     2941 ttccactcta taaattttac ctgccatgtc taaagagtat tgtgtttgca tatttttttt
     3001 atgaactaaa ataccacttt catcttttcc atgatcaaag cctatgatat ttacgcgcac
     3061 attagctatc tttggaataa gaaaattctc ttttactttt accttggttc caaaaggaac
     3121 tgtggtttca ttgctatcaa cttgaaaagt tacttcatta aaagcatcgc taaattctaa
     3181 atactcagga tataatcttg tttgaaaacg attgccatat tggatataaa aagaatttcc
     3241 ttctgcgata acagccgtaa gttcattgct tgtgttataa tttaactctt tatttaccgg
     3301 aaaaggcaca tagttgataa cctttcttgg attttttaaa gaaagtaaaa ttctatcatc
     3361 aaaaagtttt acttcaagct ctttatttat ggctttatca actccttgcg gagtgagttc
     3421 gaaatctctg ctaaattcaa ttcctgcagt ttttaaataa ttttcaattg ccaaaagatg
     3481 ataataagct cttaaattta caggcagatt tttacttgct tcatttgcaa aagcggcttt
     3541 gtgatttgaa atcacaaaat aagttaaagc tttaagcatt tccgtatcgc caagctcttg
     3601 ggttttggtg tttttaagat gataagcatg ctttggatca gcaagcgaag aattgacact
     3661 atttacggtt tgagtggcga tattttcaag atcagggtat ttgcttgcat tgatttcgct
     3721 tgtatcaatc acgcttgaat ttccccaacg cttaggattt tgcatcgcat cgatataagt
     3781 gggtttataa aaaccccaac catcgtgaag attgatcacc atactaactt caggaagtaa
     3841 aataagctct ttaatgcgtt gaacggtttt ataatcagga tcttttgggc taatatttgc
     3901 aaatttacgg tttaaatccc cattattccc acgagaacgc ttgataatgc tatcaaaagc
     3961 taaatttgga gccactataa tcttaccctt agtgatatta taatcactca aaagcaaact
     4021 tgccgcatga aatccaccag gctcatcgcc ttgaattcca ccaaaaatta aaactgtatt
     4081 attatcatct agactttttc cattttctcc tacgctaaag tctagctcta aagcaaaaat
     4141 gcttgttata aaaaataaaa ttgttaaaaa aaatttcatt ttaactcctt aaatactctc
     4201 ttgttttaaa atcatactca aaaacttctt ctatgcttga aattttaggt actccaaaat
     4261 gatcaagagc tttaaaaatg catttagcaa tgtctaaaaa tccactttta ttttctaaaa
     4321 aattataaac accaacttca ttagcagcat tgatgataac acctaaattt ggctctttta
     4381 aaaatgtatt tttaagctta aaaataggat atttttttgt gctgattgga tgaaatttta
     4441 aagcaggcat tttactaaaa tcaacagcct ctaaaatagg cgtatcttgt ttttcaaata
     4501 tagcatctga aatagctagt ttcatatctg cttttgaaaa atacgccgtg ctagctccat
     4561 ttttaaattc acacattgca tgcactaaag atcttggttc tattaaagca tcaatttctt
     4621 taaaatcata taaatgataa gcctctataa tctcaaaaag cttatttgcc atagtcgcac
     4681 tatctatagt gatctttgct cccatgttcc aattaggatg ttttaaagca tctttgacac
     4741 tgacttgatt taaatctttg attttatact tataaaaagc tccgccgctt gctgtgatat
     4801 aaagttttgc tatatttttt ttaccttcga gtaaaaattt taaagctgca tgctcactat
     4861 caacgggtaa aaatttagcc cctttcaaaa aactcccagc tactacaaga ctttctttgt
     4921 tagctaaagc tatgtttttg ccaagctctt tagcctttaa agtgctttta agtcctgcaa
     4981 aacctacaat ggcattgagt aaaagcttat cttgacattc tgttaaaatt tgctctaaac
     5041 cttcttgccc tataaaaact ctatcgtgtt taactaaatg cttatttttt gaatctttta
     5101 tggcaacaaa tttgggttta aaccttgcga tttgctcatt taaaagagcg atgttatccc
     5161 cacaagctaa agcagaaata cgaatgtttt ttaaagcagc aagtttaaga gcgtttactc
     5221 ctatgctgcc cgtgcttcca aaaagtatca taaaagagta accatcacaa aagcagcaat
     5281 gatcaccgca tcgatcctat cgagcacgcc cccatgacca gggataagat ctccactatc
     5341 ttttacacct gcttctcttt taaaataact ctcaagcaaa tctccaatca ctgcaaaaat
     5401 cgctacaaaa aacgaacaaa gcaaagaaag ccaaaaacta taaacaaaaa ctcccaaaat
     5461 agttccaata acactcgcac aaatcaagcc acctataaca ccttctaagg ttttgtttgg
     5521 acttgttaga gaaaaaggag ttttacccat aagttttccg ataaaatacg ccccactatc
     5581 acaagctgca acgataatga taagccaaaa aagtgcaaac ataccctgat ctaaatacac
     5641 ttgccaaagt gctaaaatag gcaaactagg ataaatataa ataagagctg gttttaagga
     5701 agccttttta taaaccaaat atccaacgac taataacaaa gctaaaatcc caaaaagcaa
     5761 agctttatgc gataaacttc ccaaaataaa agctatagcc aaagggataa tagagatatt
     5821 ttctaaagca aaaagttttt ttgcttcact aaaagataga tacaataaaa ccgcaaaaac
     5881 gataaaattg ataaaaaatt gatcaatcaa cgcgataata ataatagccc ctatcatcac
     5941 aagagctgaa ataattctag ttgtattaaa catatttttc cttatatact aatatctaag
     6001 cgatgaatgc tttgtgcgtc tttaaaattt ggatctttag actcatcttc ttcatttttc
     6061 tcatcatcgc tggttttagc ttcttgattg tgttttttct ttttttcttc ttgttcggct
     6121 ttttctttga tctcttcttt gatttcatga gtctcattga ctttttcaag cttgttcaaa
     6181 gttttttctt tttcattaaa ttcagccata tttagcgtag ctgcaaaacc ttcttttgca
     6241 agctcattgc ttgcttgtgt agctggataa gccatattct gatttatata attgatattt
     6301 cctaaagggc taactggcat tttaatcctt tgtgatatta atacttttaa aatttgtata
     6361 atttacaaac gccttttgct gaaccttaac aaaatttttt aaggtataat cgacccaata
     6421 cgaacctttc tttaacttag aaaagcttac acaaagcctt gcagcaaatt ctatcacatc
     6481 gaggctgatt ttttgcttgt ttgatacaat caaagtatgt gcgctaggaa tatcccttac
     6541 atgaagccac aaatcatctt ttttagcatt tttaagtaaa aattcattgc ctttttcatt
     6601 tttacccaca caaattttaa actcgttaaa ataaaaattt gccacaagat cttcttgttt
     6661 atgatcttga ttttttttgc tatttttttt aggtagtaaa atttcaagct ctatctcact
     6721 cttagcttga agcaataatt ctttcaaact caaggtaaaa tctaactttt cttttaaatt
     6781 ttgtctttgt atgtttaaat ttttagcttt ttgttctaat tttttagcat ttttataata
     6841 taaattagcg ctttgcttag gattaaattc aagcttaaat tcaagctctt tgccttcaaa
     6901 atcatcaagc ttaatttccc tttcataatc ttttaaaaca ctcaaatttg caaacaatac
     6961 atcggccctt tttctgtatt ctaaagcttt taagaataaa gaattttctt catctaaact
     7021 agaacaaagt tcttgtaaat tttgtatttt tttatccact tgtgcaagtt ttaaattttt
     7081 tatttgtttg attttactct cataaatgct tgtaaatttg cgagaaaaat aatctgcaaa
     7141 gtctttaatt tcctcaaaat tttcatccat tttataaggc tttaaagact ctaaaatcac
     7201 attaggtttt acaacacgat aacttttatc aatgtgtctt aaagcctcta tgatcaaatc
     7261 tttttcatct gtaagaataa cattggtatt tttacccgta aattcaaaat aaattttgct
     7321 ctcatagctt ttataagcct tattagcttt tacactaaaa cataaaatac gattgccttc
     7381 aaggacttta acttccttta taaaagcatt gctaaaatac tttttaagca taaaatcaaa
     7441 aggtgcatta taattttttg cattaaattt agctgtataa atcgcactca ttgcacgagt
     7501 aagatcaaaa ataaatcttt ctctatcaaa gcttaattcc aaaatattgt cattgatacg
     7561 cttgataaaa tcgatttttt taaaccgaga aaaaaaagtt tgtaattgta aaagttctgt
     7621 gtatttcata aaagaaatta taaaatattt tggcgaattt tgtggtagaa ttacattaaa
     7681 aaggaaattt gtgcagctta atgagctaaa ttgcgtgatt ttatgtggtg gtaaatctag
     7741 ccgtatggga caagataaaa gcaaattgat tcttaaaaat caaaatttaa ctcaatttca
     7801 agtagataaa ttttctaaaa tttttaaaaa tgtctatgtg agtgcgaaag aagacaaatt
     7861 tgaaaaccat tttagcttga taaaagattc tttagaattt gaagtttact ctcctatgct
     7921 tgcgctttac tctatacttt caaattttaa aaatgaattt gtttttgttt taagtgtaga
     7981 tagtcctaaa gtaggtgaaa atgaactttt aaaaatgctt ccttttttag aacaaaacta
     8041 taaaataatc atagcaaaaa cccctttgca taaacatccc ttatgtggct tttatcacag
     8101 ctctttagct caaacttgta aaaatttctt agaaaaaaat gaacaaaaaa taggactttt
     8161 attttctgag attaaaacca aatttgtaga atttgaa
//
LOCUS       DARGBD010000076         8106 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.076, whole genome shotgun sequence.
ACCESSION   DARGBD010000076 DARGBD010000000
VERSION     DARGBD010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8106
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.076"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            75..590
                     /gene="nrfH"
                     /locus_tag="SFZ04_001370"
     CDS             75..590
                     /gene="nrfH"
                     /locus_tag="SFZ04_001370"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HEG8065628.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            605..2437
                     /locus_tag="SFZ04_001371"
     CDS             605..2437
                     /locus_tag="SFZ04_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEG8065629.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            2572..3126
                     /locus_tag="SFZ04_001372"
     CDS             2572..3126
                     /locus_tag="SFZ04_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065630.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEFLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYSITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            3190..3279
                     /locus_tag="SFZ04_001373"
     tRNA            3190..3279
                     /locus_tag="SFZ04_001373"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3224..3226,aa:Ser,seq:gct)
     gene            complement(3352..4344)
                     /gene="ceuB"
                     /locus_tag="SFZ04_001374"
     CDS             complement(3352..4344)
                     /gene="ceuB"
                     /locus_tag="SFZ04_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HEG8065631.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAIDALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVIVGNK
                     ERAQGILDNVLVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(4357..5112)
                     /locus_tag="SFZ04_001375"
     CDS             complement(4357..5112)
                     /locus_tag="SFZ04_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8065632.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELNNLRNEFLDTLSGGQKQRVFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            complement(5109..6047)
                     /locus_tag="SFZ04_001376"
     CDS             complement(5109..6047)
                     /locus_tag="SFZ04_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEG8065633.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            complement(6040..7008)
                     /locus_tag="SFZ04_001377"
     CDS             complement(6040..7008)
                     /locus_tag="SFZ04_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8065634.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            complement(7094..8083)
                     /locus_tag="SFZ04_001378"
     CDS             complement(7094..8083)
                     /locus_tag="SFZ04_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HEG8065635.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSEATQMQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDLPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
BASE COUNT         2889 a         1198 c         1295 g         2724 t
ORIGIN      
        1 catctatgtt aaaattaaaa aatttatttc tgggaaattc tgtgacattg ttgtttcatt
       61 gaagatttta agaaatgata attttaagga ggaaaatttt gaagaaaact tcgaatcttt
      121 ttactatttt tcttgttttg ctttttgttt tctttgcggt tgggttttat actttttata
      181 acgctaaggg cacatcttat ttaagcaatg caagtgaatc ttgtaataac tgccatatta
      241 tgaatgaagt ttataacgaa tacatggcag gaccacactc tcaaaaagtc aaaggcgaac
      301 caagagcaac ttgtgtggat tgtcatttgc cacataattt tgtagctaag tggatagcta
      361 aagcgcaaag tggtttagga catgcttatg cttttacttt taaacttgat gagttgccta
      421 caaatttgag tgcgactgaa aaaagcagaa aaatggtgca agaaaactgc atacgctgtc
      481 atgcagattt tgctcaaaca gctatcaatg ctacaacaaa tccacatgca gacaagtcat
      541 taaattgtgc ttcttgtcat aaagatgttg gacataaaca cggaatttaa taaggagaag
      601 atgaatgaaa aaaaatattt tacgcttagg tattgtcgtt ttggttttac ttatagcggg
      661 agttttatgg ctaaataatg atatcaatca aaaaaaagaa gatgaagcaa ataaaaatgc
      721 cattgcagca aatgctgatt tttctttgct tagtgatgat gatccaaatt ttgaaaaatg
      781 gggtaaggtt tttccagagc aactaaaaat gtatttaacg gttgaaaaag aagaacctaa
      841 ggctactgaa tttggtggta atttagctta ttcaaaatta attcgctttc ctcaattaac
      901 catactttgg gcaggatatc cttttagtct tgatttcaat gaagaaagag ggcatttttg
      961 ggttcaagta gatcaaatga aaacagcaag aaacaacaaa gattttctta atgctcacgg
     1021 ccttgctgct tttaaaggcc agcccgcagc ttgtatgaat tgtcatagtg gatggactcc
     1081 atggcttata aaaaatgttg ctaaaggaga ttttactgct tttaactcta caaattattg
     1141 gactatgatt aaaaatatcc cagccgttga tggtatagtg gaaaattcac ctgaacatgc
     1201 aggtccacat ggtggtaaaa gaatgggtgt aacttgtgca gattgtcaca atccaaatga
     1261 tatgagttta agacttactc gtccagcagc tattaatgct ttagtttcta gaggatatga
     1321 aaaagatcca gtgcaaggcg taaaagctac aagagaagaa atgagaactt tagtttgctc
     1381 tcaatgccat gttgaatact attttaaacc aacgggggaa aaagtaaaag taatgggtga
     1441 aactattgta gatgatagtt ctaaaaaatg gtggaatgga actcagaaaa attatgatga
     1501 gtatgaattt tggagagatg gtaataaagc taaagagatt gaaaccgatg gtatagtttt
     1561 aacttttcct tggagtgagt ggaaaaaagg gcaaccattt agaattgaaa tgttagatga
     1621 ttattatgat aaagttcgtg gagtatttgg agctgatttt actcataaat taacaggggc
     1681 gcaaattatt aaaattcaac acccagaaag cgaactttat agtggcggtg tgcatgctgc
     1741 aaatggggta agttgcgtgg attgtcatat gccttatgtt agagaaggag ctaaaaaggt
     1801 tactcaacac aatatcacct ctcctttaag agatattaac tctgcttgta agtcttgtca
     1861 taaacaaagc gaagattatt taaaagctca agtgcttgac atacaaaata gcgttgcaca
     1921 tgatcaaaga actgcagagt atgcaattgt tagtttgatt atggatacta aaaaactacg
     1981 cgatgaacta ggtaatatgg aaaaattcca aagcgatgga aaagctgatg cgaaaaaaat
     2041 tagcgaagaa ctaaaagaag ttttagaact tcatcgtaaa gctcaaatga gagcagattt
     2101 tgttaatgct gaaaactcaa ctggtttcca taatcctcgc gaagcttcaa gaatgttatt
     2161 gcaagctgtt gatatggcaa gaatgggaca aactaaactt gtagaaatcg ccgcagcaaa
     2221 tggaattaaa gattttaaaa cttcaaattt aggttttgaa gatattcaaa aatttaatcc
     2281 aggagagctt tattataaag tagatgttaa taatcataaa gctggagagc gttactatgc
     2341 agatgaaaaa gatgttaatg gtaatcctcc aaaagaactt ttagagcatg ataaagagct
     2401 cgctccttat aattatcaag tgattgataa aaaataattc ttaagcccta taaattatgg
     2461 ggctttttct tttttatttt aaaaaatata aactttttat ttaaaattca cttttgcttc
     2521 actttgtttt gtcaaaatat cacaaatttt gataatcaaa aaggagttaa aatgatcaat
     2581 aaaaataaat tgtttagaca ggttcatatc tatcttagtt tgttcttctt gccttgtgct
     2641 ttgctttttg ctttaacggg tatagcgtat atttttggta ttaatcaaga tgtgggctta
     2701 aaagttgagc agtatcaatt gtcaaaagtt atagaaagtg gtaaagaaag agaagcttta
     2761 atagagtttt taaaaacaaa tggtttaaaa gtgccatcta atacaaatat aattaaaagt
     2821 aaagataaag gtataacaat aggtggaact cattatagtg ctaatataac tcaaaattct
     2881 actaatgaat acagcattac tctaaaaaca agatctttgc ttggagatat gattatgctt
     2941 cataaagata agggtgcttg gtatttttct gtgcttagtg taggttttgg tattacttta
     3001 tttatgcttt atatttcagg gcttatgatt actttgtttg caaataaaaa agatagaagt
     3061 aaacaatttg cagttcttgg agtaggggtt gttgtaactt tgcttttggc ttatcttagc
     3121 ctttgatttt tcctagcttt ttaagctagg tattatttat ttttttgtat aattacactt
     3181 tactttattg gacagatggg tgagcggctg aaaccacacc cctgctaagg gtgcagatct
     3241 taacgggtct cgagggttca aatccctctc tgtccgccac taaaactttc ttgaaaatcc
     3301 caagtatttt attaagtatc gaagcaagag actagccctt gcgaagttat attattttac
     3361 agcgtttttg atttctaaaa tcatagtttt taaagactct agcccatttc cacttgctaa
     3421 ataccagtat tctggatcaa gatagatgat ttttttgttt tgtgctgctt tggttttagc
     3481 gacaagcaca ttatcgagta tgccttgagc gcgttctttg ttgcctacga tgacatttct
     3541 atcaacaaca aaaatataat caggattttt ttctaatata aattcagagt tgatactttt
     3601 tccgtgtgtg cctactttta tattctcatc tactgcatta atccctaaaa catcgtgaat
     3661 aatcccaaag cgagattgag gaccaaaggc tgaaattttg ttagaatttg taagaatgat
     3721 aagagctttt ttatcttcat caactatact tttggctttt tcaatttcat ttttaatatc
     3781 tgaaattttt tctaaagctt ctttttctaa accataaagt tttgcaacgc ttaagacatt
     3841 gttttcaaaa gagcttaaaa aatttgcatt atcaagacct acaaataaag ttggagctat
     3901 ttcttttaac ttatcataaa atttactttg gcgtccagaa atgatgataa gatcaggttt
     3961 taaagcatca atggcttcaa aatcaacttg ttgtactcca cctacactag gtttgttttt
     4021 aaattgttgt aggtattttg gtaaattttt agcaggaacg ccaacgactt tatcatttaa
     4081 ttttaaagca tcaaaagtat ctaaaattcc aagatctaag atcactacct tagaaggatt
     4141 tttagggatt ttattttctc ctagactatc cttcactaaa aaactatcac cctcatcgct
     4201 catactaata ggcaaaactt tcaccgtagc agtgttggtt tttgttgtag aacttgcgtt
     4261 gttttcattt gagtttgaat tacaagctgt taagattaga cttaaaaaaa atgcaaaaaa
     4321 tgcaaaaact aaagattttt tcatattttc tcctttttaa aaataaatac aaattttctt
     4381 accattaatt tgacttacgg gtatatccat atcataaatt tgttttaaat tttcttgatt
     4441 gatgatttca tcttttgagc cttgttttaa aagcttccca tcttttaagg ctatgatttc
     4501 atcagaataa atcgaagcaa aattaatatc atgtaataca acagctatac ttttgttaaa
     4561 gtctttgact aaatttttca ttagttgcat gatttgtacg ctatgcttca tatcaagatt
     4621 gttcaaaggt tcatcaaaca ttataaattc agtatcctga gcgatgatca tggctataaa
     4681 aactctttgc ttttgtcccc cgcttaatgt atctaaaaat tcatttctta agttgttaag
     4741 ttccatgtat tctaaagctt cattgatttt gattttatcg tttgtattaa gtcttccttg
     4801 agaatgcgga aaacgcccaa aagcgactaa ttcttcaact tttaatctta aattgatatt
     4861 gttttgttgt ttgagaatgg aaattttttg tgctaagatt tgctctttat aattttttaa
     4921 attcattcca tcgatataaa tttctccact actaggtttt atcaaacgac ttgctagagc
     4981 taaaagagtg gattttccag cgccattggc tcctattata gaagtgattt tgcctttatg
     5041 aaaatcaagg ctaagatctg aaataatgac tttattatca taaaatttgg tgatattttt
     5101 tagtttaatc ataatttatt accctttaat acaagataga taaaatatat cccacctaag
     5161 aaattaataa ccacgcttat agtggcatta taatcaaaaa ctctagagac aaaaaacacc
     5221 cctccaagta aagccaaaat actaataagt atacaagcgc ttagcaaaat actatgcttt
     5281 gcagttttaa atagttcata agtgatattt accaccaaaa gccctaaaaa ggttatagga
     5341 cctacaagtg cggtgctaat agaagttaaa atagctatga taatcattaa ttgttttgaa
     5401 attttttgat aatttatccc taaatttatc gctaaatctt tgcctaaatt taaaggatct
     5461 aaaaatttca tatagcgaaa aatccatata aaacttaaaa agctaataat ataagcaaga
     5521 attaaaacat caaaagcaat attatcaaaa ctagcaaaca ttcttccttg tattaccatg
     5581 aattcatcag ggtcgattag cacttcaaaa aaagagctta aagtgctaaa aagtgttcca
     5641 aaaactaaac ctaaaagcat gataagataa atacttctat cgctactaaa taaaatttta
     5701 taaagtccta gtgaaaaaac caccatacaa actagagtga ttaaaaaatt gatatcgttt
     5761 ttataaacac ttaaattagc cgcaccaaaa gaaaagataa gagcactttg aagcaacata
     5821 tataaagaat ctaatcctat gatagcaggg gttagaattt tgttattgca taaagtttga
     5881 aaaatcactg ttgaaacagc gatacaaata gctactatga taatagctgc aatttgtaaa
     5941 aaacgacttt ttaaagcata ctcatcaaag ccatttaaac ccacaagtat aaaaatccct
     6001 atcataccaa gtgttaaaaa gcttaaaatt agcatttttt tacgcataaa ctttcctttt
     6061 tagcaaaaga aagataaaga ttaaagatcc taaaacacct gtagtgatgc ttaaaggcat
     6121 ttcaaaagga aagatgacaa gtcttgaaat gatatcgcaa acaagcaaaa acaaagctcc
     6181 acaaagtgct atatagataa gattttttct aagattatca cctagataaa gagctactaa
     6241 atttgggata attagcccta aaaaagggat aatcccaacg cttacaatca ctaaactagt
     6301 gataatgctt acaatcatca agcctaaaaa taatatccca ttataagaaa ttccaagatt
     6361 taaagctata tcttcaccca tgccaactat ggtaatttta tgagctaaaa aataagcaag
     6421 tataaaaagt ggtaaagaaa tgtagagcaa ttcataattt ccctgcataa catttgccat
     6481 actgccttgt agccaacctt ggatattttg tatataattt aaagcatagg caaaaaaagt
     6541 ggttatagca ctaataatac ctccaaacat caagcctatc aaaggtacaa aaatcacatc
     6601 tttgagtttg atttttctta aaatttggat aaatataaaa gaacccaaaa gtgcaaatac
     6661 agaagcaatg atagtttgag taaaaaaaga cgctccagca aaaaatatta aagaaataag
     6721 tatgccaaat ttagcacaat ccatagtccc tgctgtagtt ggggaaacga atttattttg
     6781 cgtgagttgt tgcatgataa gcccgcatat actaagactc attcctgtga gtaaaattgc
     6841 tataagtcta ggaattcttg tgagagttat gatttctagt tgagtggagt taagattaag
     6901 aatatctttt acattgatac tgataactcc tataaataaa cttatcattc caaagaataa
     6961 aagtaaagct ataagcactt ttaaactcaa tatatgctta aaaaacaaat ctttccttat
     7021 agtaataata attatcaaaa atgaaattgt aatgaaattt gttttaagaa atgataaaac
     7081 tacaaaggat attttagtaa gaaatcaaaa atccagtgga aagtctttgt aagtgtttgt
     7141 tatagtctat aaggctttct ccatagccat taaagtattg taaataccaa taaattccgt
     7201 tattaaaaat atcatatcct agatcaactt gtatagcgcc tttgttattg tggaatttaa
     7261 gattatttct tagcataaga ttgataaaat aatcatcacc taaatacgct aaattcacat
     7321 caaaatttcc catataatgc aagatggcag gattatcatc atcttttttg ttttcaggaa
     7381 ttctatacca aaggcgtgga acaaataaaa atttattata taaaatagca gtagatacat
     7441 aaattctatt ccatgagcga gattgtaaat tctcatctcc cttgccattg ctttcatgca
     7501 atatacctac gcgtagattg ttaaaaaatt cataatcttt aagatataaa ggaagatcta
     7561 taaaaaattc tggttgatag ttggtttctc taaaaggaga agaatgctca taaatttgcc
     7621 accaagaagt ttgagtatag gctatataat atttttcatc tagtcctagt aaattttcaa
     7681 aaagtctttt tttaacacta agttggaatt tcgcctcact cttattatta tttactccta
     7741 aagaattaaa actataagca aaaggtaaaa aataattcat cttataagag ctaatgccaa
     7801 ggggattaaa gctttcattt tcaccaagat aattagccaa agctaagcga gaaaagtctt
     7861 gtttttcttc tttttttata gtgatagaat tttgcatttg tgttgcttcg cttgagttat
     7921 tttgttcttg agaaatcaaa acagatgaat tttttaaagc gagttttttg taaatttcca
     7981 tagctttttt ataatcgcct tgtttttcat actctaaagc ttgttgtaaa tcactagccc
     8041 atataaaaac gcataagctt aaaaataaag caatttttct cattttaact tgcttttaaa
     8101 tttttc
//
LOCUS       DARGBD010000077         7979 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.077, whole genome shotgun sequence.
ACCESSION   DARGBD010000077 DARGBD010000000
VERSION     DARGBD010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7979
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.077"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            74..1324
                     /locus_tag="SFZ04_001379"
     CDS             74..1324
                     /locus_tag="SFZ04_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEG8065636.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            1339..2703
                     /locus_tag="SFZ04_001380"
     CDS             1339..2703
                     /locus_tag="SFZ04_001380"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HEG8065637.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGVNAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2711..3232)
                     /locus_tag="SFZ04_001381"
     CDS             complement(2711..3232)
                     /locus_tag="SFZ04_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065638.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLVFLMICLLLLVMGAINLGLLFKQIRILKSFSKEEMK
                     EFLSLRMKKYTKV"
     gene            complement(3213..4223)
                     /gene="ribD"
                     /locus_tag="SFZ04_001382"
     CDS             complement(3213..4223)
                     /gene="ribD"
                     /locus_tag="SFZ04_001382"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEG8065639.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDGNKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4429..4516)
                     /locus_tag="SFZ04_001383"
     tRNA            complement(4429..4516)
                     /locus_tag="SFZ04_001383"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4480..4482),aa:Ser,seq:tga)
     gene            complement(4538..4611)
                     /locus_tag="SFZ04_001384"
     tRNA            complement(4538..4611)
                     /locus_tag="SFZ04_001384"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4577..4579),aa:Cys,seq:gca)
     gene            complement(4630..4718)
                     /locus_tag="SFZ04_001385"
     tRNA            complement(4630..4718)
                     /locus_tag="SFZ04_001385"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4682..4684),aa:Leu,seq:taa)
     gene            complement(4728..4802)
                     /locus_tag="SFZ04_001386"
     tRNA            complement(4728..4802)
                     /locus_tag="SFZ04_001386"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4768..4770),aa:Gly,seq:gcc)
     gene            complement(4874..5626)
                     /locus_tag="SFZ04_001387"
     CDS             complement(4874..5626)
                     /locus_tag="SFZ04_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065640.1"
                     /translation="MLAFFKGLSVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNNLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNANTNIAPR
                     MLNAKSDNIELSSPIISEKEQILNAKALFICK"
     gene            5699..6718
                     /gene="mutY"
                     /locus_tag="SFZ04_001388"
     CDS             5699..6718
                     /gene="mutY"
                     /locus_tag="SFZ04_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEG8065641.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCGICPLYDF
                     CQGKFNTEFYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMSFVGEFKHGYTKYKLNIKVYHQILNNENKNYEFQTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6704..7962)
                     /locus_tag="SFZ04_001389"
                     /pseudo
     CDS             complement(6704..7962)
                     /locus_tag="SFZ04_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT         2621 a         1195 c         1353 g         2810 t
ORIGIN      
        1 tttttaaaaa ataattattt ataaatattt tgctaaaata aaagagatgt aatcttaaat
       61 ttaaggaaga ataatgaata ctcctaaatg gactagtcac gatacaaggt gggttttatc
      121 tctttttgga acagctattg gagccggcgt acttttgttg cctattagtg ctgggcttgg
      181 tggattgata cctttgttag ttatacttgt tttagctttt cctatgactt acttagctca
      241 tagaaattta tgtcgctttg tgctttcaag ttctaatcca aaagatgata ttacttttgt
      301 tgcagaaagt tattttggca agggcggtgg atttttaatt acacttttgt atttttttgc
      361 tattttgcct attttattgg tttatagtgc taatcttaca acaactttgc ttgagttctt
      421 aatcaatcag ttcaatttca atgcagatct tactcatgct gctcgttggt gggtgagttt
      481 tttgattgtt ggagttttgg ttttgatttc tattcttggt gaaaatgttg taacaaaagc
      541 aatgagtttt cttgtttttc cttttattat atttttattt attttttcat tgcttttaat
      601 tccacaatgg aatttatcgt tatttgcaaa tgttgatttt tccgtaattt caacaagtaa
      661 tttttgggtt actttatggc ttgttattcc tgtgatggta tttagtttta atcactctcc
      721 tatcatttct tcacttgctt gttattgtaa aaaagaatat ggtggttatg ctgaacctcg
      781 cgctagaaaa attatttctt tggcaattat tcttatggtt tttgttgtaa tgttttttgt
      841 tttttcttgt gctttaacct ttacaccaga agattttgca tcagcaaaag atcaaaatat
      901 caatattctt acttttatag caaataaatt tcctgaagtt tctttactag cttatgttgg
      961 acctattgtt gcacttgtgg ctattagcaa aagtttctta gggcattatc ttggttctca
     1021 agaaggctta aatggtattt tatataaagc aagtaatggt agaattcaag gtaaattcgc
     1081 tcaaacttta acagcgatca ttacctttgc tatcgcgtgg cttgttgcgt ataaaaatcc
     1141 aagtgttata ggaattatcg aggctattgg tggtcctgtt ttggctattt tgcttttctt
     1201 aatgccgctt tattgtattt atcgttttga tattttggca agatttcgta ataaattttt
     1261 agatcttttt gttttggtaa tggggatagt tgcaatttct gctgcaattc atgatctttt
     1321 ataaattaag gataaaaaat gagtaattta agcattttta aaataggtgt tggcccttct
     1381 tcttctcata ctttagggcc tatgcttgct ggaaatttat tttgtaaaaa agttgctaaa
     1441 aagcttgatg aaattgatag agttgaggtt actctttatg gttctttgtc gttaacaggc
     1501 aaaggacact tgagtgataa ggctgtaatt tgggggttaa atggcttaga agctaaaaat
     1561 ttaagtgcgg caatacaaga tgaagtaaat aaaaatgcta ttgaaaatgc tcaaattgat
     1621 ttttgtggcg agaaaaaact tagttttaat tatgaaaaag atttgatatt ttctaaagat
     1681 tttttacctt tacatgagaa tggtatgaaa attaaagctt atgattgtaa aggtgggtta
     1741 gttgatgagg aaacttatta ttctgtaggt ggaggctttg ttttaacagc tgcggaatta
     1801 gaaaaaaaag gtaaaaattc taaccaaaat aaaaagaaaa aactagatat agagcttaat
     1861 aacgctaaag aagctttaga gctttgcgat aaaagagatt gggatttagc agagctttcc
     1921 tatcgttatg aattgcaatt tcacactaaa gaggaaattc gtgcttattg tcttgaaatt
     1981 tgggaagtga tgcaagaagt gtattataat ggtacgcatc caaatgaaga ttatttgccc
     2041 ggaaaacttc atttaaaacg tagagctaaa gggcttaaag aaagagtggc gatgacagct
     2101 gatcctatgg gcattataga ttttatttct ttatatgcta ttgcgattgc tgaagaaaat
     2161 gctagcggag caaaagttgt aaccgcgcca acaaatggag catgtgccgt tatccctgct
     2221 gttatgcttt atcttaaaaa ccatactata ggttttagtg atgaaaaagc tatagagttt
     2281 ttattaacag caatgcttat aggttctttt tataagaaaa atgcaagtat tagcggagca
     2341 gaagcaggct gtcaagcaga aattggtagt gctagttcta tggcagctgc ggctatggca
     2401 acagttttag gggttaatgc ttttaaagca tgtaatgctg ctgaaatggc aatggaacat
     2461 catctaggtt taacttgcga tccagttgca ggacttgtgc aaattccttg catagaaaga
     2521 aatgcctttg gagctattaa ggctataagt gctgctagaa tggcaatgac acgcaaatcc
     2581 actcctatgg taagccttga tgaggttata gaaaccatgt atgaaacagg aaaagatatg
     2641 aattataaat acaaagaaac ttctttaggt ggtcttgcta caaatttaaa aacagtatgc
     2701 taaagtgttt ttacactttg gtgtattttt tcattcttag acttaaaaat tctttcattt
     2761 cttctttgga aaaactttta agaatgcgaa tttgcttaaa aagcaagcca agattgattg
     2821 ctcccatcac taaaagcaat aagcaaatca ttaaaaaaac aagatctatg gctccaaatt
     2881 cattaatcat agccaaactt gcaaaaaata cgctcgctaa taacaaaaaa aataaaagca
     2941 atatttgttt taattttgcc tcattaaaat tatcgcaatt ttgagtgaaa tttctaaaaa
     3001 gtatgatctt tttacccaaa tttgaaacta aaatttcatc attttcttta aataagcctt
     3061 cttttaaact ttgataaaaa aagatttcat tatttaaatt taaagcatct ttgtagcttg
     3121 ataaggtgta gtctttgtaa aaaaaggatt ttaattcatt tttcttttct attttaaata
     3181 atcttaaatc atttctcgca taaaaaaatc cactaaagtt cataaatgcc ataagtatca
     3241 ctccctaaaa aattcctata aagtggcttg aaatttaaag gtattgtaac atttttttca
     3301 tcatttaaac ttgaactttg gaaaatcaaa aacatatcta tttcatcttt aaaggttttg
     3361 agaaaatttt ctccaccctc atacattaaa aatttagctt cacttggaat ttgggtataa
     3421 atttggcggt ttggaacctt aaataaaggg atatttttat caaaattatc tatattttga
     3481 cggcttaaga tacaaagatt aggcgctttt gctttgcaaa gcctagcatc tagtataggg
     3541 tgatcttttc ttatggtttc tccaccgact acaagcaaat caatcaccgc tctaatttta
     3601 tgtgcataag tgcgacttag ctcattgctt acgattttgc caaaaggcga gccattcata
     3661 gaaagggcta atttaaaaag tttaaattgc cctttttgcc attttaaaaa aggttttaaa
     3721 agtttttttc cttcttcttt aagtatgtca aattcaacct ctatgccttg tttttttaaa
     3781 aattcagccc caccacttgc gattttattt ccatctttaa cgctgatgaa aattttttta
     3841 aaacctagct cgctaaagag ttttgcacaa ggaggcgttt ttccttgatg agagcaaggc
     3901 tcaagtgtga caaaagctat gctatcttta aatacacctt gatggttttt gcaaataaac
     3961 tcatgcaagg cgtttgcttc tttaggcaat gaaatttcag gtcttaagct tttaaaagca
     4021 tgagctatgg cattaagttc cgcatgagct aatccagctt tttcatgagc ttttatggct
     4081 aaaatttttt catttttatc taagattaca cagcctacag ccggatttgg ataggttaaa
     4141 aactgatatt tccaagcctc atttaaagct aaattcatat aaaattcttt catttgccta
     4201 ccttgtattt taaaatttga catattttta aaattttata tttttgtttt aagataacaa
     4261 attctaaatt ttccatttgt atttcttatt tttaattata ttagccatag tttttctaag
     4321 tttttttagg atataacaaa aatagtaaga ttgaagtatt atttttcatt tgtagtatcc
     4381 tttataattt caggaatgat ataagcttga taaactagaa agtcttggtg gccgggagaa
     4441 agggattcga acccctggag gtgtgaccct caacggtttt caagaccgcc gctttcgacc
     4501 actcagccat ctcccgataa agtaaagttt tgccttttgg aggcgacatc cggattcgaa
     4561 ccggagatca aggctttgca ggcccatgcc ttaccgcttg gctatgtcgc cctgataatg
     4621 ttgaaaaagt ggtgcccgag gccggacttg aaccggcacg gaagaaaaat tccgagggat
     4681 tttaagtccc ttgtgtctac caattccacc acccgggcgg gtgattatgg agcgggaaac
     4741 gagattcgaa ctcgcgaccc caaccttggc aaggttgtgc tctacccctg agctattccc
     4801 gcataaattt ctgaaagaat tgaagataaa agtatagcaa aataaactta aaaggagttt
     4861 attttgcctt aagttatttg caaataaata aagctttcgc gtttaaaatt tgttcttttt
     4921 cgctgataat tggagatgaa agttctatat tgtcagattt tgcatttagc attctaggtg
     4981 cgatattggt attggcattt acttgtaaat ttttcaatac acaagtttta ttaagatcta
     5041 aagagtaagt tttttcatat tcgtatgatg tttttaaaag ctctttgtag agattttctt
     5101 tgttgttgtt tagtgtatct tttgaaaatt ttgtttgtat ggctggtgtt gaaacgctga
     5161 taaaattatt tttagctatg atagaattga tgtcatttaa aagattgtta aaatctgcaa
     5221 gttggttttc tttaaattca cattctaaat tcgcatcaaa tctttgacct tttggagttt
     5281 gtataccatc tttataggaa aaattaggtt ctaaagaaaa acttcctccg ctacaaaaat
     5341 tttctttttt tgagcgttct aaaatttgat tgaaagtatt tgtgatttca gctttttcac
     5401 tattgtctaa tgtaattttt gaacttaaat tttcatttgc ccaaaaatta atatttgcat
     5461 ataaaatatc gggttttagt gtattgctta cttctatatt tcttgaaaaa tataaatcat
     5521 gattagagtc ttttttgcct aaaaattcta cattaaaaac tactcctgca acaaaaagta
     5581 ataaacataa aaaacctaca cttaaacctt taaaaaaagc taacatggat atccttaata
     5641 atttaatttg agctaatttt agcaaaaaat tttaaaattt tttgttatac tctcatttat
     5701 gcaaaaaaaa gagcttgaaa aactacaaga aaatttactt ctttggtatg aaaaaaatgg
     5761 acgcaaaact ttgccttggc gtaatttaca aagtcaaaat tgtgatgaaa gtttaaagca
     5821 tattgataga gcttatggag tttatatcag cgaaattatg cttcagcaaa ctcaagttaa
     5881 atcagtttta gaaaggtttt atttcccctt tttgcaaaaa tttcctactt tagaaagttt
     5941 ggctaatgct aatgaagacg agcttttaaa ggcttggcaa ggacttggtt attacactcg
     6001 tgctagaaat ttaaaaaagg cagctttaga atgcgtggat aagtttgggg ctaaattacc
     6061 taaagaagtt gaggatctaa aaaaattaag tggtatagga gcttatacag caggcgctat
     6121 agcttgtttt ggctacgatc aaaaggtttc ttttgttgat ggcaatatac gccgtgtgct
     6181 ttctcgtctt tttgctttgg aaaatcctag catgaaagaa cttgaaaaaa gagctaaaga
     6241 gcttttaaat ttaaatcatg cctttgatca caaccaagct ttgcttgata taggggcttt
     6301 ggtttgtgtg ggtaaaaatg caaagtgtgg gatttgtcct ttgtatgatt tttgtcaagg
     6361 caaatttaat acagagtttt atccaagagc taaaaaaata ctttatgaga gtttaaattt
     6421 aaatcttttt ttgtttgaat ttaataaaaa atttgcgata cagaaaagcc aagataagct
     6481 ttataagggt atgtataatt ttcctttttt taaagaagga gaatataaac tttctaaaga
     6541 tatgagtttt gtaggggagt ttaagcacgg ctatactaag tataaactta atatcaaggt
     6601 ttatcatcaa attttaaaca atgaaaataa aaattatgaa tttcaaacct taaaagagtt
     6661 agaaagtacc gcactttcgg cactttcttt aaaagcgtta aaattaatta agctctgatt
     6721 ttttaggcaa acataaagta gctataagca tgatgattgt aaaaatagct atatagataa
     6781 aaaagccatt ttctatacct gcatttttaa attgtaaagc aacccaagga gcagatcctc
     6841 caaaaacagc atttgaaata gcataaccca aacctgtccc taaagctctt acatgttcag
     6901 gaaaaagttt tgctttaaaa atcccagcaa ctgaagtata aaaacttaaa ataacaaaca
     6961 ataataccac caacataaat gtcaaagaag gattattttg tgcgttattg gctataagtg
     7021 aaaaaatagg ataaattcct accaatgcca aaatacaaaa tacaattaaa gatcgtttgt
     7081 gacctatttt atctcctata tatccaaaaa gaggttgaat gatcattagt ataaataaag
     7141 cacctaagaa aagattatta acaagcattt tatccatacc cgtattttcc ataaaagttt
     7201 tagtataagt tgtaatggtg taaaaagcta aagaacctcc agaggtaacc ccaagtacca
     7261 ttaaaaaagg tttccaagat ttgcataatg cttttaaagt accacgatct tcatgctggt
     7321 gaagttttgt agcactttca ttcatcattt ttcttacaaa aagcgagcct agtgctaaaa
     7381 ttctgcctat tacaaaaagt attctccaag cataatcttt catatcatca atgctaaaaa
     7441 ataaaaacat tatactaatg cttgcaacgg ccaaaagttg accacctatt agggttacat
     7501 actgaaaaga tgagtaaaaa ccgcattttc cttccgtagc aagttctgaa agataagtag
     7561 ctgctatgcc atactccccg cctacactaa gaccttgaat aagtcttgct attaaaagca
     7621 agataatagc aagatcgccc actgtatctt tgcttggtaa ggctgctatc ataaaagagc
     7681 ctaaagccat taaaaccact gatataacca tagattttta cgacctactt tatcagctaa
     7741 agagccaaaa agccaagagc ctataggacg cataaaaaat cctgctgcaa aaaccccaaa
     7801 ggcattgatt tgctggataa caggattatc tgaagttgaa aaagtatgag caaaataagt
     7861 tgctgtaaaa gcatagatat aaaaatcaaa ccactctact aaatttccgc tacttgcagc
     7921 aataatagag cgaatttttt tcgtgcgagt aagctcttgc ataaaccctt ccttaattt
//
LOCUS       DARGBD010000078         7960 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.078, whole genome shotgun sequence.
ACCESSION   DARGBD010000078 DARGBD010000000
VERSION     DARGBD010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7960
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.078"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1024
                     /locus_tag="SFZ04_001390"
     CDS             <1..1024
                     /locus_tag="SFZ04_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HEG8065642.1"
                     /translation="EAYYKPYIYDNYENFASFYDLLLQVQDDDIYFDFDKDEDTYMVV
                     NKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKNDFLDKYKYLEKFGDEED
                     KKLYAKYDYLYYASEILDYLPEYMGDGVFYLASKMIEKYPEKKIEILKTLADKEKGIF
                     YHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAFDNEIKELKEIKHNFKD
                     FNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNPTLSYKIAADIVLDAYDS
                     GADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFEFLALIEGIQAPSLKNHT
                     LKVSLI"
     gene            1021..1404
                     /locus_tag="SFZ04_001391"
     CDS             1021..1404
                     /locus_tag="SFZ04_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG8065643.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIYTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1397..2080
                     /gene="rsmD"
                     /locus_tag="SFZ04_001392"
     CDS             1397..2080
                     /gene="rsmD"
                     /locus_tag="SFZ04_001392"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEG8065644.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPLKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            2139..3185
                     /locus_tag="SFZ04_001393"
     CDS             2139..3185
                     /locus_tag="SFZ04_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEG8065645.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNSDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3185..3526
                     /locus_tag="SFZ04_001394"
     CDS             3185..3526
                     /locus_tag="SFZ04_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065646.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKTKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3589..3786
                     /gene="flgM"
                     /locus_tag="SFZ04_001395"
     CDS             3589..3786
                     /gene="flgM"
                     /locus_tag="SFZ04_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEG8065647.1"
                     /translation="MINPIQQSYVANTTLNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            3829..4263
                     /locus_tag="SFZ04_001396"
     CDS             3829..4263
                     /locus_tag="SFZ04_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HEG8065648.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESITPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            4273..6099
                     /gene="flgK"
                     /locus_tag="SFZ04_001397"
     CDS             4273..6099
                     /gene="flgK"
                     /locus_tag="SFZ04_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEG8065649.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITAGGVQVGTGTAIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRFP
                     DLQNTGILKDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLSGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            6116..6880
                     /locus_tag="SFZ04_001398"
     CDS             6116..6880
                     /locus_tag="SFZ04_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HEG8065650.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            6884..7648
                     /locus_tag="SFZ04_001399"
     CDS             6884..7648
                     /locus_tag="SFZ04_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEG8065651.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7641..>7960)
                     /locus_tag="SFZ04_001400"
     CDS             complement(7641..>7960)
                     /locus_tag="SFZ04_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEG8065652.1"
                     /translation="FLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSG
                     RLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGV
                     NFN"
BASE COUNT         3064 a         1191 c         1272 g         2433 t
ORIGIN      
        1 tgaggcttat tataaacctt atatttatga taattatgaa aattttgcaa gtttttatga
       61 tttgcttttg caagttcaag atgatgatat ttattttgat tttgataaag atgaagatac
      121 ttacatggtt gtaaataagc aaatcatacc actttttaca cctttagaaa aaatagcaaa
      181 agaatttgat tttagtcttt gtatcgagcc tttaagcaca aaaagagcca ttaaagatct
      241 tatcatcgat aaaaatgatt ttttagacaa atacaaatat cttgaaaaat ttggtgatga
      301 agaggataaa aaactttatg caaaatatga ttatttatat tatgcaagtg aaattttaga
      361 ctatcttcct gaatatatgg gcgatggagt gttttatttg gcttcaaaaa tgatagaaaa
      421 atatcctgaa aaaaagatag aaattttaaa aactctagca gataaagaaa agggtatttt
      481 ttatcatctt gaaagcaaaa atgaaatttt agaaacaacg atcaaaaacc tacaaaatga
      541 aattttaaat ttagggcttt ttgataaaaa tattttacac tttgatttac ctaaaaccaa
      601 tgcttttgat aatgagatca aagaacttaa agaaattaaa cataatttta aagatttcaa
      661 tatagctttt tatggtttta atgcttgcga tactttaaaa tccaaactta aggctaaatt
      721 tatttcctat gaaaacagta taaaaaataa tggctttagc ttgcttaatc taaatcctac
      781 gctaagctat aaaatagccg cagatattgt tttggacgct tatgatagcg gggctgattt
      841 tatggtagta aaagaagaaa aagattttta tctttttgat acttgtgcta aaaaacttat
      901 gcaaacaagt ggaagggaat ttgaagactt ttatattttg agccgttttg agtttttagc
      961 ccttatcgaa ggcatacaag ctccatcatt aaaaaatcac actttaaagg ttagtttgat
     1021 atgaaaatct ctttagaatg caaagatctc atcatagaaa aaactttaga acttttttta
     1081 aaagatcatt tggtaatgaa aaaaaattgt gatttcatca ttagcgatga aaaaatttat
     1141 accgcaaaac ccttatttat catctctaaa aactctccat ttttaagcat accatttagc
     1201 aaagaagcct tgtttgagtc tttaaatgaa tttgataatg ccttaaaagc agcagctttg
     1261 caacttgcac ttgaacaaaa aagactgctt gaagaaaaaa ttgacgctat tgctttggaa
     1321 tttaaaaaag attatgaaaa taaaatcgat cttgccataa aagatcttaa aaacaaactc
     1381 gtaaaagcac ttaatgatga atgatgaatt tataagcgtt aaagactttt ttaatcacaa
     1441 tgaaaaaaga aaaaaatttc ttcaaaaaca agaaattaaa cctcttaaag aaaaaacaaa
     1501 aaaaactaaa gaaacaaagc tttatacaaa tatagaaagt ggtaaataca aagggaaaaa
     1561 actactttta cctagtctta caacaacaag aagtactaaa agcatagtca aaagttgtgt
     1621 ttttaatgta ataagagaag atttaagaag taaaattttc attgaagcct ttggaggaag
     1681 tgctttaatg gcggctgaag cactaagtaa tcatgcttta aaagcttatg ctatagaact
     1741 tgatgtaaaa gcttataaaa ttgctttaga aaatgctaaa aatatagatc caaatttaga
     1801 agtgatccat gcaaatactt ttgaaatttt acctaaactc atagaaaatt caaaaaatga
     1861 aatcatctta tatcttgacc caccttttga taccagagaa ggttttagcg atatttatga
     1921 aaaaatttat cattttttag aaaatttaga tttaaagact ttaaatttaa tcatttttga
     1981 acaccactca accataaaaa ctcccgaaaa aatccaaaat tttcaaaaag tcaaagaaaa
     2041 gaaatttgga tcaactagct taagctttta cgcttcttaa cttacttgga acacttcttg
     2101 cttgatctat catcaacaat agattaaagg aagaatccat gagagtttta acgatatttt
     2161 tactctttat gacaagcatt tttgcagtgc aaatcaagga tgtagcaaac actgtaggtg
     2221 taagagataa ccaacttata ggttatggac ttgttgtagg gcttaatgga agcggcgatg
     2281 gaacaagctc taaatttaca ctacaatcca tctcaaacct tttgcaaggt atgaatatca
     2341 aagtagatcc taacgatatc aaatcaaaaa ataccgcagc tgttatggtt acagccaaac
     2401 ttccggcctt tgcaaaaagc ggagataaac ttgatattac cgtttcatct atgggtgatg
     2461 caaaatcttt acaaggcgga acacttttac tgactgcact tcgtgggatt gatggtgaaa
     2521 tttatgctat agcacaaggc tctatctcaa caggaggttt aacacctaga ccaggaggag
     2581 caggttctca ctcaactgct gcaaccgtaa tgggcggagc taatgtagaa agagaaattc
     2641 cacaaaattt tagtcaaaac agtgatctaa ccttaagttt aaaagtagcg gactttaaaa
     2701 ccgcaaatga tatagaaaga gttttaaata ctgtctttgg cgaagaagta gctaaagcta
     2761 tcgactctcg cacagtaaaa ctcaaaaaac ctgaagatct ttcaaatgtt gattttatgg
     2821 caagagtttt agaacaagat atagcttata aaccacaaag caaagttatc atcgatgaaa
     2881 gaacaggaac agtgattgct ggagttgatg tagaggtaga acctgtttta atcactcata
     2941 aagatatcac cataaaaata gatccaaaca ataacgcagt agctaatcaa aatgaaatcg
     3001 atatgaaaga tggtggtttt gtagatccaa gttcaaatac cttaagaatc aacaatgcaa
     3061 aaagcacagt tgcgaatata gctagaatgc ttaacaaact tggagcaacc ccaaatgaca
     3121 ttatcgctat tatggaaaat ttaaagcgcg caggtgcaat taacgcggat ttggagatca
     3181 tctaatgaaa gtggataatt ttttaaatac ttatagtatg aatagcgctt tacttgatcg
     3241 tgcagccaaa gcaagaagct tagaatcaag tattaaaata aatgataatg atatagttac
     3301 aaaaaccaaa gaagatgaag ccttaaaaga acaaacagat gcttttgaag catttttttt
     3361 aaagcaagtt ttagatgtat ctttaaaaag tcaaaattca ctctttggaa aagatgccag
     3421 tgatgaaata tactcttcca tgtataacga tactatgagt aaagctttaa gtggaggtat
     3481 gggtttttca aaattattat acgatttttt aaaagaaagg ggttaagttt tttaaatttg
     3541 ggtcgatatg gtttgtagag gattataact aagatcaagg aggcagaaat gatcaatcct
     3601 atacaacaaa gttatgtggc aaataccaca ttaaatacaa atagaataga taaagaaact
     3661 aaaacaaacg atactcaaaa aacggaaaat gataaagcga gtaaaatcgc agagcagatt
     3721 aaaaacggta cttataaaat cgatacaaaa gctacggctg ctgcgattgc tgactcttta
     3781 atctaaaact ttcattctcc ttttttttga gagagaaaag gagaaaatat gcttaaacaa
     3841 agacttgatg aagtaaatgc tatcttagca aaacttattg ctttaaccga agaagatata
     3901 gaaaatatca aagtggctaa acatgagagt ataacgccaa gtgtagaaga aaaaaacaaa
     3961 cttattgccg aatttattac agctaaaaaa caacttgatg ttgccttggt tgagctaaat
     4021 aatagctcta caaaagggct tagtgaactc ttagatgatg aagataaaca aaaactagat
     4081 ctacttaaaa aaaatcttca aaaccttcat agtaaaaaca aagagtatgc taaatttgtt
     4141 cttattgtca aagattttct tgatggctta gtaaataaaa tgtttgatat caatgatgga
     4201 acaaataatg cttatggaga taaaaagaca aatccagagt caattttcaa gatcaatgta
     4261 taaggattta taatgggtat ttttggaaca ttatacacag gtgttacagg cttaaaggca
     4321 agcgaagttc aaatcgcaac aactggaaac aatatctcaa atgctaatgc aactttttat
     4381 acacgccaaa gagtagtgca aactacaaat gggtatatta ccgcaggtgg agttcaagta
     4441 ggcacaggaa ctgctataga aagtatagtg cgtttgcatg atgagtattc ttactataaa
     4501 ttaaaaggtg catcaaacca actagaatac actaaatata tggcttcaac cttacaagaa
     4561 atcgctcagc gttttccaga cttacaaaat actggaattt tgaaagattt agaaaattat
     4621 aacaaagctt ggaatgattt tgcatctaac cctaatgaaa atgccacaaa aatagccctt
     4681 gtaaaagctt ctcagacctt aacagaaagc gttaataaca cttttgcaac cttggataaa
     4741 atccaaaaaa aagtaaatga tgatattaaa aatacagttg atgagattaa tagaattggc
     4801 gaagaaattg ctactataaa taaacaaatt tatggacaag aagccttacc aacagaacac
     4861 gcaaatgaac ttagggatag aagagatgaa cttgagctta ctctttcaaa gctagttagt
     4921 gcagttgcaa gcaaaaatga aatcaatcaa gacaatcgcc ttgatacaac catcactgat
     4981 ccaggacatc aatacaatct aagtatagaa ggttttagta tagtagatgg aataaatttt
     5041 catcctttaa agcttgatta tgatgataaa aataaatctt atagcattta ttatgaaact
     5101 cctgatgaaa aagttcgcga tcttactgca aaaattagcg gtggacagct tggtgctcaa
     5161 cttgacttac gcggtagaaa ctatagcaaa agcgaaggaa aatatgaaga tggaattatc
     5221 caaggttata tggattcttt agatactttt gctaagacca tgatcaatga aactaacaat
     5281 ctttatgcaa gttctgcgaa aagttctgtt acttctgatt atctatctgg gcttaaggga
     5341 gatattcctt tagttaatta cgacagaacc atacaaccag gaagttttga tatagtcatt
     5401 tatgatgata aaggcgataa aaaactcacc aaaaccatca ccatagatgt aaatacaacc
     5461 atgaatgata tcatgcgtca aatcaatgct aatacagatg ataataacaa taaaaattca
     5521 aacgatgatg ttgatgatca tatcaatgca agttttagct acgatgcaaa aactggagat
     5581 ggtttatttc aaatcaatgc aaaatcaggt tttaaggtag ccattgaaga taagggcaca
     5641 aatttcgcag gtgcgtttag tataggtggt tttttcagcg gaactgatgc aagtaatatg
     5701 aaagtaaaag attccatctt aaatgaccca agcacagtaa gagcaagttt aagtggggtt
     5761 gatagtggca atgacatggc aaataaaatc atccaacttc aatatgaaaa agttaatttt
     5821 tataatgaag atggcactat cgataatctt accatggaag aatattaccg caaacttaca
     5881 ggtaaaatag cctcagatgg tgaaaataac aatgtcgtca attcaagcaa tgaaactctt
     5941 tataattctg tttatagcga gtaccaatct aaaagtggcg taaatacaaa tgaagaatta
     6001 gccgccctta tacaatatca atcaagttac ggtgcagcag caaaaatcgt ctcaaccgta
     6061 gatcaaatgc ttgatacctt actagggctt aaatcttaag ctctagtaat atcaaatgaa
     6121 aaattttatc catcttaaag ctaagctcga ttttttagcc aatcaaaaaa ataccaatca
     6181 ttcccttttt gaaactccag atcctttgca aattgctaaa attcacaatg atgaatttat
     6241 tgccttaatt tgtgctttat ttgcctatgg aaatgctaaa aatatagtaa attttctaaa
     6301 gaaacttgat ttttctttat taaaccttca agaaaaacaa ataaaaaaag aacttaaaaa
     6361 tttaaaatac cgcttccaaa atgaaaaaga tatacaagaa atttttatca ctctttcaag
     6421 gctgaaaaat gaaatttcac tctacgaact tttttatcaa gcctatcaag aaagagaaaa
     6481 taccacagat gccatcttag cttttatgca aaaaatcaaa accttaaatt catattcaag
     6541 ttatggatat gattttttct ttggaaaaat ttggcaaaac actcctactt cacctcttaa
     6601 acgctataat atgtatctaa gatggatggt tagaaaagat gaacttgatc ttggactttt
     6661 taccaaaatt cacaccaaag atcttttaat tccacttgat acacatgcac ataaaatttc
     6721 cttgacttta ggacttctaa agcgtaaaat atatgattat aaaagtgttt tagaactcac
     6781 acaaaattta aaaaaattag atgcaaatga tcccataaaa tatgactttg cactctatcg
     6841 tttagggcaa agtaaggaaa ttgacaaatt taaggagtga agaatgggtt ttgagcactt
     6901 aaatacgatt tattatttca tacttttttt tgtagctctt tttgctggtt ttatagattc
     6961 tattgtaggt ggaggaggac ttattactct accagcactc atagcctgtg ggattcctgc
     7021 gcatttatcc ttagcaacaa acaaactcca aagcgtcttt ggttctttta cggctacttt
     7081 aacttatttt aaatccacca ctctacctca tcttgcttgg ggtgtttttt tcacagcctt
     7141 aggagcagct ataggaagtt atagtgttct ttttgtaaaa gatgagcaat taaagcttat
     7201 tatcttaatc tttttaactc ttaccttctt atatacagcc ttacgtccca acttaggcaa
     7261 acacgaaagc gaacctaaaa taaaaaatat caaaattttt catttaattt gtggcttaac
     7321 tttaggattt tatgatggat ttttagggcc tggaacgggt tcattttgga tttttgcttg
     7381 tgtgatgcta ctaggtttta atatgagaaa agcgagcatt aatactaaaa ttttaaattt
     7441 cacaagcaac atcattgctc ttgctatatt tttatggcaa tatgaacttt tatgggctgt
     7501 aggtttgctt atgggtgtag gacaagtttt aggagcttat ttgggttcaa aacttgtgtt
     7561 aaaaactaat ggaaagttta taaaaacttt atttttaatc gttgtaggag ctactattat
     7621 taaagtagct tgggattatt ttagttaaaa ttgacccctg agctaagctc ccacataggt
     7681 aaaaatatac ctaaagccaa aaacaaaact aaaagcgcta caaataaagt catcataggc
     7741 tctaaaaaaa tcaaaaatct atccatcaaa ttttcgcttt tttgttgata atatttggca
     7801 atttcttcac ttaatacttc aagtcttcca cttttcatcg caacactaag catagaaaac
     7861 accaaagaat caaaaatatc aatcttttta aaagcctgac ttaactcaag accagaatct
     7921 ataaaactaa aaagtttttt atactgaaaa attaaaaatt
//
LOCUS       DARGBD010000079         7892 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.079, whole genome shotgun sequence.
ACCESSION   DARGBD010000079 DARGBD010000000
VERSION     DARGBD010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7892
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.079"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            63..635
                     /locus_tag="SFZ04_001401"
     CDS             63..635
                     /locus_tag="SFZ04_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065653.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(651..1217)
                     /gene="rsmG"
                     /locus_tag="SFZ04_001402"
     CDS             complement(651..1217)
                     /gene="rsmG"
                     /locus_tag="SFZ04_001402"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEG8065654.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADIGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(1218..1778)
                     /gene="ribA"
                     /locus_tag="SFZ04_001403"
     CDS             complement(1218..1778)
                     /gene="ribA"
                     /locus_tag="SFZ04_001403"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEG8065655.1"
                     /translation="MKIKISEIANLPSKWGNFQIQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            1836..2819
                     /gene="hemB"
                     /locus_tag="SFZ04_001404"
     CDS             1836..2819
                     /gene="hemB"
                     /locus_tag="SFZ04_001404"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEG8065656.1"
                     /translation="MFKRFRRLRLNENLRAMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDVTLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            2816..3736
                     /gene="argF"
                     /locus_tag="SFZ04_001405"
     CDS             2816..3736
                     /gene="argF"
                     /locus_tag="SFZ04_001405"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG8065657.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVVGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            3733..4224
                     /locus_tag="SFZ04_001406"
     CDS             3733..4224
                     /locus_tag="SFZ04_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HEG8065658.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRAIFKMKQSENENEKCL
                     VLENGSFNSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            4211..5566
                     /gene="hemN"
                     /locus_tag="SFZ04_001407"
     CDS             4211..5566
                     /gene="hemN"
                     /locus_tag="SFZ04_001407"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEG8065659.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQSLILKIRSVFGNFSKDAEISCEIDPRFLNEEQAIVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQSFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCENFLSKNG
                     YKMIGMDHFAKEDDELFKALENGTLHRNFQGYTTKGGADLVGVGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVVLSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            5568..6833
                     /locus_tag="SFZ04_001408"
     CDS             5568..6833
                     /locus_tag="SFZ04_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8065660.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKINYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVGMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            6830..7591
                     /locus_tag="SFZ04_001409"
     CDS             6830..7591
                     /locus_tag="SFZ04_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065661.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDSEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKNLKFFSRIFKNENFLSDFKESKQEVVTIKKHEKLEIFKNLSQED
                     QEISFVKIEILNYDSNEDSLSFNLDIFPSGMSYKYGILKGSMHIILQGKTSSTMLFPF
                     LKSMIYKNKSENSSEKIFTLMINQKKHYKLIANLS"
     gene            complement(7594..7800)
                     /locus_tag="SFZ04_001410"
     CDS             complement(7594..7800)
                     /locus_tag="SFZ04_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065662.1"
                     /translation="MEFLAFIFLIIIFLFVVFIIVTRYEKKIKLLNQNIQNMKEDIAD
                     LKETTQKNRSLIEKNRSNIENIIK"
BASE COUNT         2842 a          927 c         1421 g         2702 t
ORIGIN      
        1 tttattaatc aactaagaat ataatttaat tcattaatta aatttattaa aaaggaataa
       61 agatgaaaaa aattcttgta agtgttttaa gttcttgctt gttagcttcg gctttaagtg
      121 ctgtatcttt taaagaagat agtttaaagg tttcttttga aggatataaa actaaagata
      181 tgataggaac aaaaggtgaa tttaaaaatg tagaatataa attttctaaa aatataaagg
      241 atttggcaag ttatcttaaa ggcgctaaag ctaccataaa gccaagcaat gcttttatgg
      301 gtgaaggcaa tgatattata accaataata tcacaaaagt atttttccct gctttattgg
      361 gagatacgga tattaaagtt gtttttcaag atgtgattgc gggtgaaaat aaaggcgtta
      421 tttcagcaaa aattactatg gataaaaaaa gtactattgt acctttaact tataccatca
      481 aagataataa atttgaagct aaaggacaac ttgatttgca tacttttaaa aatggttcta
      541 aagcattaaa agcattaagc gatgttgctg caggacatgg tggaatttct tggcctttag
      601 tggatatcag ttttaatgct gatttagcag aataaaaagt agccttaggg ctactttaaa
      661 atacaatatc ttcttaaatt attttcaaaa atttcataat cttttatatt ttcaagttct
      721 tgataaattt cactaccttt ccataaaata aaaactgtat tttcatcttt tagatttttg
      781 caaatttcaa gcaaaggctt gacatccatt aaggctcttg aagtgatgat atcagcttta
      841 aaggtattct tgtattcttg aactttttct ttgtaaatat gtaaatttgg aagttcacat
      901 tctattttta atgtccgcaa aaaggcagct tttttgggat tgggttcgaa aagatgaaaa
      961 ttgctttgca gtaaaaaagc taaaaataca gctggaaatc ctgcgccact tcctatatcg
     1021 gcaatatttt ttgctttaga aaaatcataa aaatctaaaa ttttaatact atcaaagata
     1081 ttttcatcta tattttttaa atgagtaaga ttgtgaatgc ggttaaattt agataataat
     1141 tctttataaa tttttacctt ttcttcaaag ttttttaaat cgtagttttg caaaaaatca
     1201 taatctttaa aaatcattta tttaagatgt cccatttgag tttgttttat gtttaaatac
     1261 tctacattaa aacgattagg ttctattaaa atcggtatgc gtgtgatgat tttttctttg
     1321 atagaatcta gcttttcagg gttatttgtg agtaaattaa ccttagaaat ttcatagtgt
     1381 ttgagtataa attctacaat ttcataagtt ctctcatcgg ctttaaagcc aagctgatga
     1441 tttgctttaa tcgtatcaaa acctttatct tgtaaagcat aagcattaac cttgttaaaa
     1501 agccctatac cccttccttc ttgcctaaga taaatcacca ttccgccatt cttttctata
     1561 tattttagtg aaaattcaag ctgttcccca caatcacact ttaaacttcc taaagcatct
     1621 cctgttaagc actctgaatg aattcttaga ttgagtgtgt cttttggagt atttttaaat
     1681 atacataaat gttctttatc attttctttg aaactttgta tttggaaatt tccccatttg
     1741 ctaggtaaat tcgcaatttc tgaaattttt attttcattt actactctct ataatcaaat
     1801 ttatgttaag attttagcaa aaaaaggaca aaaaaatgtt taaaagattt agaagattaa
     1861 ggcttaatga aaacttaaga gccatggtaa gagaaaattc tttaagtgta aatgatttga
     1921 tttatccgct ttttgtggtt aatggaacgg ggataaaaaa agaaatttct tctatgcctg
     1981 atgtgtttca aatgagttta gatgaaattt taaaagagtg tcaaaatgta gttaatttag
     2041 gcattaaagc cattatactt tttggcgttt tggaaaatga gaaaaaagac agctgtggaa
     2101 gcgatgcttt agatgatgaa gggcttgttg caagaagtat aagagagatt aagaaaaatt
     2161 ttccagatct ttttataatc agtgatcttt gtttttgtga atacacagat cacgggcatt
     2221 gtgggattat cgatccaaaa acaaaaagtg tggataatga tgtcacttta gaaatttcag
     2281 ccaaacaagc cttagttcac gcaagagcag gggtagatat gatagcacct agtggaatga
     2341 tggatggtat tatcactact ttgcgcaaag ctttagataa agaaggtttt gaaaatttgc
     2401 ctataatggc gtattctact aaatttgctt caagttatta tgggccattt cgagatgtag
     2461 cagaatcagc tccaagttat ggagatagaa aaagctatca aatggatttt gctaatggta
     2521 aagaagcttt agaagaaagc ttggaagatg aagcacaagg agctgatatt ttgatggtaa
     2581 aacccgctct tgcttatctt gatgtggtta aagaaatatc ccttcattct aacttgcctt
     2641 tgtgtgttta taatgtaagc ggagagtatg ctatgttaaa ggcagctaaa aatgcaggag
     2701 tgattgatta tgaaaaagtt ttgtatgaaa ctatgatagc ttttaaaaga gcaggggcaa
     2761 agcttatcat cacttatcat gccaaagaat tagctaaaat gttaaaagga gaaaaatgaa
     2821 acatttttta actttaagag atttttctaa ggaggaaatt ttaagccttg taaatcatgc
     2881 tagcgagtta aaaaaagagc ctaaaaaact tttacaagat aaaactttag caatgatttt
     2941 tgaaaaaaac tctacaagaa caagaatggc ctttgaatta gccataacag agcttggcgg
     3001 aaaggcttta tttttaagta gcaatgattt acaacttagt cgtggcgagc ctgtaaagga
     3061 tacagctagg gtggtagggg cgatggttga ttttgtgatg atgagagtca ataaacatga
     3121 aactttactc gaatttgcaa gatattctaa agcccctgtg atcaatgctt taagcgagct
     3181 ttatcaccct actcaggttt taggagattt gcttactatc aaagaatgga ataagatgca
     3241 aaatggtata gcaaaagttg cttttatcgg agatagtaac aatatgtgca attcttggct
     3301 tattgcggct gcgattttgg gctttgaatt tagtatagct ataccaaaaa actataaaat
     3361 tagccctgaa atttgggaat ttgctatgaa acaggctttg atttcaggag ctaaaatttc
     3421 cttaagtcat gataaatttg aagccttaaa ggataaagat gtagtcatta ccgatacttg
     3481 ggtttctatg ggtgaagaga atgaaaaaga acgcaagatt aaagaatttg aaggatttat
     3541 gattgatgaa aaggctatga gcgttgccaa taaagacgcg atattgcttc attgtttgcc
     3601 tgcttatagg ggttatgaag tgagtgaaga aatttttgaa aaacatgcag atgtgatttt
     3661 tgaagaagca agaaatcgcc tttatgtggt aaaagccttg ctttgctttt tggataatca
     3721 gagaggaaga gaatgaaaga gctagaaaag tatagcactt gcttaaaacg cattgatgaa
     3781 tttagtcaaa atctaggaat aaagaaaaaa gatagagcga tttttaaaat gaagcaaagc
     3841 gagaatgaaa acgaaaaatg tttagttctt gaaaatggaa gttttaattc tcctgagcct
     3901 tggtttgtga tagatgaaaa cgatgaaatt cacactttgc tttctttaca aagtcttaag
     3961 aatatacttg aaagtttaaa acaaagtcaa aaagagaatt ttgaattgcg tttagaaaag
     4021 gcgatttatc aacaaattcc tgtagatttt aacgatgttt ggacggttgc tatggatgag
     4081 atcaagcaaa aggcacaaaa tggtactatg gaagttagta ttgatcttga aaaattaatt
     4141 tctaaaatca aacaagagca tccaaattta tttgtagata tgcaagcgat gatagaaagg
     4201 gtaaaccaaa atgagagatt ataaagcttt tgtaaaatac tctaaagcag gaccacgcta
     4261 tacttcttat cctacagcag tagagtttaa tacaaatttc aaatacgaag aatatataga
     4321 aattttaaaa aaacaagata gatctttatc gctttatttt catttaccat tttgtaggag
     4381 tgcctgttat ttttgtggtt gcaatgttat ttatactgca aaagaagaga gtaaagaaag
     4441 gtatttaact tatattttta aagagcttga tattttaagt actattttag atactaaaag
     4501 agaagtggtg caaatgcact ttggtggcgg aactccaact ttttttagcg ctaaacaact
     4561 tcaaagtttg attttaaaaa tcagatctgt ttttggaaat ttttctaaag atgcagagat
     4621 tagctgtgag atcgatccgc gttttttaaa tgaggaacaa gccatagttt taacgcaaaa
     4681 tggctttaat cgtattagct ttggagtgca ggattttgat gaaaaagttc aaaaagaaat
     4741 tcatcgcatc cagtcttttg aattaacaca aaatgcttta aatcttgtaa gaagcaaagg
     4801 gataaagtct gtaaatatgg atttaattta tggtttgcct tatcaaaatt tacaaagctt
     4861 tacacaaact ttagaaaaag ttatgctttt aaaccctgat cgtttggcga tttttaatta
     4921 cgctcatgtg ccttggctta agaaaaatat gagaaaattt gatgaaaata ccctgccaag
     4981 tcctgatgtt aaacttgaaa ttttagaatt ttgtgagaat tttttgagta aaaacggcta
     5041 taaaatgata ggaatggatc attttgcaaa agaagatgat gagcttttta aagctttaga
     5101 aaatggaact ttacatagaa atttccaagg ttataccacc aaaggcggtg ctgatttagt
     5161 cggtgttggg cttacaagta taggtgaagg acaaagacat tatgcacaaa atttcaaaga
     5221 tatgtcaagt tatgaagctg cattagatag aggagttttg ccttttgaaa gaggtgtagt
     5281 tttaagcgat gatgatgagc ttagaaaagc agttattatg gagttaatgg caaattttaa
     5341 gcttgatatt aagtcaatag aaaaagaatt ttgcattgat tttcaggagt attttaaaga
     5401 ggatttaaaa gctttggaag aatacaaaga ttttattaat tttgatgaaa attttatcaa
     5461 agtcaatgaa acaggcgttt tgcttataag aaatattgct atgtgttttg atgcttatat
     5521 gaaaaacatt agtgaagata aaaaagtatt ctcaaaaacg gtgtaagatg aaatttagtc
     5581 aaataagtga tgcttgtgtt aaatgtggca aatgtatacc tgtttgtact atacatgaag
     5641 aaaatcgcga tgaaattact agtccaagag gatttttaga tcttttagct gcttataaag
     5701 agggaagtct agagcttgat aaagaagcta agaaagtttt tgaatcttgt tttttatgca
     5761 ccaattgtgt tgaagtatgt ccaagtaaat taagagtaga taatgccata gaagaagttc
     5821 gttatgatat agctaaaaaa tttggtatag cttggtataa aaaacttatt tttttctttc
     5881 taagaagacg caaaatttta gatttggtag ctaagcttgg ctatgtgttt caaagttgtg
     5941 cgtttaaaat tcaaaatgag aatgaaaata caggtatgaa ggcaagattt tccatgcctt
     6001 ttgttaaaaa gggaagattg cttacaagtt ttaataaaaa aagtttctta aattctaatc
     6061 caaaatttat caataatgat ggagaaaaaa caataggttt ttttgtaggt tgtttggcga
     6121 attattttta catagatacg gctaatgcag tgcttaaaat cgctaaggaa ttaaaaatca
     6181 atgtggattt gatgaaagaa caagtgtgtt gtggagcgcc gcaatttttt acgggtgatt
     6241 ttaaaagtgt tgaagttttg gctaaaaaaa atattgagta ttttgaaaaa aaattagaaa
     6301 aattagatgc tattatagtt cctgaggcca cttgttcggc tatgttaaag atagattatg
     6361 aacatttttt tataatgcaa aatgatttag actgggcaaa acgcgcaaaa tgtgtgtcat
     6421 ctaagatata tatggctagc gagtattttt ataaatttac ttctttagaa gaaattttaa
     6481 aaacaaaaaa taaaattaat tatagcatta cttatcacga tccttgccat gcaagaaaaa
     6541 tgcaaggggt ttttaaagag ccaagagaac ttttaaaaac aaattatcat tttgtagaaa
     6601 tgagtaattc taatacttgt tgcggttttg gcggggtggg tatgcaaacg gattattatg
     6661 atagagcctt aagtgtaggg cttaaaaaag cacaaatgat cgatgaaagt aaggctagtg
     6721 tggtaagtgc cgagtgttca gcttgcagaa tgcaaatttc aaatgcatta gaacaaaatt
     6781 caagcaaggt tgtttttgct agtcctttag aacttatagc aaaagctttg tgatgatgaa
     6841 gatagtattt aaaggcaaaa gttctgaata tgaaattcaa agatcgtgct tttgtgttga
     6901 tgcttttgtg attaaagata agattgaaga acgagatggt gttgatttta tcacttcaaa
     6961 tgtagatctt ttggaattta gtgatgacag ttttactttt gaagaaattg taaaacattt
     7021 taatatttgt gatagtgaag atatgattat cgttgaagat tttgacatga aatcaaacaa
     7081 agataatcaa aaccaagaag atgatataga acacaacatc ttaaaatccg aaaaaataat
     7141 acatgaaaac acaaaacaaa caagtatgca atttaaaaat ttaaaatttt tttcaagaat
     7201 ttttaaaaat gaaaattttc tttctgattt taaagaaagt aagcaagaag ttgttactat
     7261 caaaaaacat gaaaaacttg aaatttttaa aaatttatct caagaagatc aagaaattag
     7321 ctttgttaaa attgaaattt taaattatga tagtaatgaa gatagtttaa gttttaatct
     7381 tgatatattt ccaagcggta tgagctataa gtacggaatt ttaaaaggct ctatgcatat
     7441 tattttacaa ggtaaaactt ctagtacgat gctttttccg tttttaaaaa gtatgattta
     7501 taaaaataaa agcgaaaatt caagtgaaaa aatttttact ttaatgataa atcagaaaaa
     7561 acactataag cttatcgcaa atctttctta gttttatttt attatatttt ctatattaga
     7621 gcgatttttt tcaattaaag agcgattttt ttgagttgtt tctttaagat cggctatatc
     7681 ttctttcata ttttgtatgt tttggttgag taattttatc tttttttcat agcgagtaac
     7741 gatgataaag actacaaata aaaatataat aatcaaaaaa ataaatgcta aaaattccat
     7801 atttttcctt tttaaaacta gattttgaaa tatatcattt aaatacttca aaaaactttt
     7861 acgggttttt tattttgtat tttagttttt tt
//
LOCUS       DARGBD010000080         7872 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.080, whole genome shotgun sequence.
ACCESSION   DARGBD010000080 DARGBD010000000
VERSION     DARGBD010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7872
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.080"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..3918
                     /locus_tag="SFZ04_001411"
     CDS             <1..3918
                     /locus_tag="SFZ04_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065663.1"
                     /translation="KTELIQTIKNLTINNKEVKQIDFIYPNFSILHAILKNIDFHQRK
                     MLSKNQILTMEILEILKQTCDNHNNIEINIHTLNELDAGQNVNLKDLSSSEICTKVYL
                     EDLEEEIQDKKQDKDLNLFYHTDKNNLCIEFINTLKELAKDSEDITTLDELIENIDPD
                     DISSEKFDDFKKKVLEKIGNVIESDFFKNSISPTLKNTYEKFINELLEHIKKLAEEKE
                     YEKIKIILSAIAGVAIATVVAVLTGGAGLAILAAGLFSLMGSASEYYEFAQRDYGTLL
                     TPLAAFLATRCAMFIHYINSRLLSCVLIIDKKEIIDLSGFGLYLGSDESNIASNLAYK
                     ITLSEEIKSIENIFSEIFLNPEQKDKGYKNTPNDSKSSNLPAFISTQKLSNLYLKNNA
                     ILKNLQEDIKQFIYFSYIESPNFNSSKLAEFFAQKNQNAQIDLNTTKISKNYLIISNI
                     PNKYNAGLSESLTQEIANYNIQDKYRRIKKNIDTSKKTYDSTRDYSEYSIEMPQDENE
                     PYILQLSPFVKISKEAYENSKKAYEDMQKVYKYLTNFVATPQKLPEFAKTAKEKLAIS
                     ENEPIIEIVKKTENLRHCERINILAYIDYNKKINDKKWLPYFYIKKFFKQNEVKESII
                     EKEKKIAHQYLTFLKKEFFEKSDKSSFENYSLMECLFISFVLYQAKLIFPNINLDLKK
                     YGGSNFVYIKYLDKTYVLWTDECPIYVNNEPTNITAYEVVSQLLKILDKKDYSFVEND
                     SSITIDDFFNELSKDLDTTNTLDKKIIKLKQMYHLDEQKCIKEFMNLDEETQRAFVAW
                     MDIEKQISDLSKLLEQMYGKEYLNKAKEQKTSEIFTYAMLKILLSASPFISFTAQMLW
                     DFNFLKTIEYVIQACIKINKEGFKEFFKEQLGIFAPPKKNSIYHIHIKSNLIIKARLQ
                     QIEKELIHTKIQMILAQEIKSNLIIQKNTSGLNLFITKIKEYFNEKQIKIYWSDKYMK
                     QLFIYSNQESNISKIALMHSIDIQTQKYTIYTYAKLNKLDLASIVTGEFVGIFLNYLF
                     PTNFKALQEQYESIVYQLYTFKDDSPLAVIRDHFVTYPFAINSKFISFDLKKIFYGID
                     LCTGVFDTHFSFHYEIDQKLEENKEFLLKRLLSYLIIDEKRNATALEDIKEQKYIIDD
                     YTFYFKELKSLELKKCTIYQLPCNHPLFKEFRNKEKQISAFKKDEDSPIQAYNEALQI
                     LQDFANGLYNTSKDKTGRYIEDKNKTRRLLEKLNIIGQNNLKAMYMGINGNEESLKAI
                     GKRENNTSKASANADITSETKTPPNFIGRLATTIIIEDGLYMG"
     gene            3937..5223
                     /locus_tag="SFZ04_001412"
                     /pseudo
     CDS             3937..5223
                     /locus_tag="SFZ04_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(5227..6126)
                     /locus_tag="SFZ04_001413"
     CDS             complement(5227..6126)
                     /locus_tag="SFZ04_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEG8065664.1"
                     /translation="MIEKEEIGIAIENYDECISGSKTFVFNTKGGTIGSGDDCTFRIQ
                     DKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSFSRMPSGYEIIISIGDIFKIGNL
                     EFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENN
                     DYKFIEEEKADDSFLKEIIQKNPNSLEYENVLKSLVKNLKDIKTKQQSSKLNKDYSSI
                     SIKDFESIINNIPLIKSTRLINILALSLIAKELYTPIFEEMEENMFIKYIEAAIQNNI
                     KEDKILFENLTIKALEKYIKDFE"
     gene            complement(6123..>7872)
                     /locus_tag="SFZ04_001414"
     CDS             complement(6123..>7872)
                     /locus_tag="SFZ04_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEG8065665.1"
                     /translation="KYFNKEILKIWINENWNTLSKYSISKDDFLEGVDELKQFNLKSF
                     TEDENSIHTGKRKLESISRTQRIYILLNFLNSDKPKEKYLIKEDLGFAANSVFSNNSQ
                     ITSIDKIYTKVGMMDFLNDLNQQVDTAINIESWMLDNNFKENKNTLTMGILKLYLSEY
                     QNAWQNLLASLQPVRYNTKEAMLNELNILSKKENPLYSLLKIVSSNTNLNDAVLLTQA
                     YNLGLNAGEIRSNFIGVSNAFTQYHKLVNKNTLLSVGNIEVGKGTDDEKILDILNTNI
                     TNMSNKIIDFSSNNNQSAEEKISYALGGNKDANDPFAVFQMNIKKLPNDLERYYSQLS
                     NYSWNFIENHGISLFNTAWINEVYNPFVNDIAPYYPFNDESVADLSMDSFKTFFGRNG
                     TLNSFYKKYLNNVLVKRKNNYSINSQFASKLNFSKEFLDFITNAGNLSSLILNGNDNI
                     KVNFTIQSLDLSADFSFIKLGYDNKNIQYDHTLNQTLQIVAEKFNNGTSLNFTAYNYS
                     NPNLNYTKSYKGEWAWYKFIKDNKSNSIYSIIFNNNKNLYFDFEIINGASELNNIVYI
                     LNNLKIVENITGVNKQ"
BASE COUNT         3048 a         1030 c         1064 g         2730 t
ORIGIN      
        1 aaaacagaat taattcaaac tattaaaaat ttaacaatca acaataaaga agttaaacag
       61 attgatttta tttatcctaa tttttctatt ttacacgcta tattaaaaaa tattgatttt
      121 catcaaagaa aaatgctatc taaaaatcaa atattgacta tggaaatact agaaatttta
      181 aaacaaactt gtgataatca caataatata gaaataaata tccataccct taatgagctt
      241 gatgctggac aaaatgtaaa tttaaaagat ttatcaagca gtgaaatttg cactaaagtt
      301 tatttagaag acttagaaga agaaattcaa gacaagaaac aagataaaga tttgaatctt
      361 ttttatcata cagataaaaa taatctttgt atcgaattta tcaatacttt aaaagaacta
      421 gccaaagatt ctgaagatat aacaacctta gacgagttaa tcgaaaacat tgatcctgat
      481 gatataagca gtgagaaatt tgatgatttt aagaaaaaag ttttagaaaa gattggaaat
      541 gtcatagaat cggatttttt caaaaatagc ataagtccca ctttaaaaaa tacttatgaa
      601 aaatttatca atgagttgtt agaacacatt aaaaaacttg ccgaagaaaa agaatatgaa
      661 aaaattaaaa tcatactaag tgctatagcg ggtgttgcaa tagccacagt ggtagctgtt
      721 cttacaggtg gggcaggatt agctattttg gctgctggtt tattttcttt aatgggttct
      781 gcaagcgagt attatgaatt tgctcaaaga gattatggca cacttttaac gcctttagcc
      841 gcatttttag ccactagatg tgctatgttt attcattata ttaattctcg cttgttatct
      901 tgtgttttaa ttattgataa aaaagaaatt attgatttaa gtggttttgg attatatctt
      961 ggaagcgatg aaagcaatat cgcttcgaat ttggcttata aaatcacttt aagcgaagaa
     1021 ataaaaagca ttgaaaatat ttttagtgaa atctttttaa acccagaaca aaaagacaag
     1081 gggtataaaa atacacccaa tgattcaaaa tcgagcaatt tacccgcttt catttcaacg
     1141 caaaaattat ctaatttgta tttaaaaaac aatgctattt taaagaattt gcaagaagat
     1201 attaaacaat ttatttattt ttcctatata gaaagtccaa attttaactc aagtaaacta
     1261 gctgaatttt tcgcacaaaa aaatcaaaat gcacaaatag atttaaatac aactaaaata
     1321 agtaaaaatt atttgattat ttcaaatatc cccaataaat acaatgcagg acttagtgaa
     1381 agtttaactc aagaaatcgc caactataat atacaagata aatacagaag aattaaaaaa
     1441 aatattgata cttcaaaaaa aacttatgac agcacaagag attatagcga atatagcata
     1501 gaaatgccac aagatgaaaa tgaaccttat attttacaat taagcccttt tgtgaaaata
     1561 tccaaagaag cttatgagaa tagtaaaaaa gcttatgaag atatgcaaaa ggtttataaa
     1621 tatttaacaa attttgttgc tacacctcag aagctaccag aattcgcaaa aacagctaaa
     1681 gaaaaattag caatatcaga aaatgagcca ataatagaaa tagtaaaaaa gacggaaaat
     1741 ttacgacatt gcgaacgaat aaacatttta gcttatattg actacaataa aaaaataaat
     1801 gataaaaaat ggcttcctta tttttatatc aaaaaattct ttaaacaaaa cgaagtcaaa
     1861 gaatccatca tagaaaaaga aaaaaagata gctcatcaat atttaacttt tttgaaaaaa
     1921 gagttttttg aaaaatcgga taaatcttca tttgagaact attctttaat ggaatgttta
     1981 ttcatttcat ttgtcttgta tcaagctaag cttatttttc caaatatcaa tttggatttg
     2041 aaaaaatatg gaggcagtaa ttttgtatat ataaaatact tagataaaac ttatgtttta
     2101 tggacagatg aatgtccaat atatgtaaat aatgagccaa caaatattac agcatatgaa
     2161 gttgtatcgc aattattaaa aatacttgac aaaaaagatt attcttttgt ggaaaatgat
     2221 agttcgataa ctatagatga tttttttaat gaattatcaa aagatttaga tacaacaaat
     2281 acattagata aaaaaataat caaattaaag caaatgtatc atttagatga acaaaaatgc
     2341 attaaagaat ttatgaattt agacgaagaa acgcaacgag cttttgttgc atggatggat
     2401 atagagaaac aaatatcaga tttatcaaag cttttggaac agatgtatgg aaaagaatat
     2461 ttaaataagg caaaagaaca aaaaacaagt gaaatattta cttatgcaat gttaaaaatt
     2521 ttattaagtg ctagtccttt tatcagcttt acagctcaaa tgttgtggga ttttaatttt
     2581 ttaaaaacaa tagaatatgt tattcaagct tgtattaaaa taaacaaaga aggatttaaa
     2641 gaatttttta aagaacagct tggtattttt gcacctccaa aaaagaatag tatatatcat
     2701 atacacataa aatctaattt aataataaaa gcacgcttgc aacaaataga aaaagaatta
     2761 attcatacta aaatccaaat gattttagca caagagataa aatccaattt aataatacaa
     2821 aaaaatacat ccggtttaaa tctatttatc acaaagataa aagaatactt taatgaaaaa
     2881 caaattaaga tttattggag tgataaatat atgaagcaat tatttatata ctctaatcaa
     2941 gaaagcaata tatctaaaat tgctcttatg catagcatag atatacaaac tcaaaaatat
     3001 actatttata cttatgctaa gctaaataaa cttgaccttg cttctattgt gactggagaa
     3061 tttgtgggta tttttttaaa ttatctcttt ccaacaaatt ttaaagccct acaagaacaa
     3121 tatgaaagca ttgtttatca gctttacacc tttaaagatg attctccttt agcggttata
     3181 agagatcatt ttgtaactta tccttttgca atcaattcga aattcattag ctttgattta
     3241 aagaaaattt tttatggcat agatctttgc acaggagttt ttgacactca tttttccttt
     3301 cattatgaaa tagatcaaaa gcttgaagaa aataaagaat ttcttttaaa aagacttttg
     3361 tcttatttga ttattgatga gaaaagaaat gcaactgctt tagaggatat aaaagaacaa
     3421 aaatatatta tagatgatta tactttttat tttaaagagt taaaatcttt agaacttaaa
     3481 aaatgcacta tatatcaact tccttgtaat catcctttgt ttaaagagtt tagaaataaa
     3541 gaaaagcaaa ttagtgcttt taaaaaggat gaagatagtc ctattcaagc ttacaatgaa
     3601 gctttacaaa ttttacaaga ttttgctaat ggactttaca atacaagtaa agataaaaca
     3661 ggaagatata tagaagataa aaataaaacc agaagattac tagaaaaact caatatcata
     3721 ggacaaaaca atcttaaggc tatgtatatg gggataaatg gaaatgaaga aagcttgaaa
     3781 gctataggca aaagagaaaa taacactagc aaagcaagcg caaatgctga tatcacatca
     3841 gaaacaaaaa ctccgcctaa tttcataggc agactagcca ctactataat catagaagat
     3901 ggtttatata tgggttaaat taagaaagga tagataatga gtgaaactta tgagatttat
     3961 acacctaatg gattaacatt agatgtggaa aaagatacca ataaaatact ctttaaagaa
     4021 aatgttaagc ccacaggcaa ctataccgaa gaatattcca aagcggtttt taaatcttat
     4081 catattatga aaaactcccc ctacaaagac tataaacccc aatacctaga tcctaacttt
     4141 tatacaggac aaaaatccac tctagttgaa tttaaagatt ggcaaagtat atatttaaaa
     4201 gatcctatca aaggagctat agctccttga actaaagcag aaaaagctta ttataaatct
     4261 ttaaaaacta aaagagaaag atataaatat ttagcaataa gaagtggatt aagatctgtg
     4321 gttatagata taccctatga tgcttatgcc aatgtagatg aaaaaggata tttaatcaat
     4381 gaagaatacg cctatattta tgatgaagtt aacaataata aagaaacctt aaaatcttct
     4441 ctttttagac aagaatgggg tatagcagca ggaatactag gaaaacctga atattttgtg
     4501 cgttctaaaa atcatggctt taatgccaga atgatacaat gttttatttt atatattcaa
     4561 ctcacaggtg gaggatatga agaattaggt ataaaaaggg gaatttataa ttatgccgat
     4621 aatcttttag aaataggtat aggtatggca gggatacata aaaatccttt aagggctaaa
     4681 ttagtaaaag atttagctaa aactatacag cctgatgaat ttggtatgct tccttttata
     4741 gatgagatta tgggagtaga ttgggtgatt gatttaaata aatatgattt tgcctatgat
     4801 gaagaaggca ggatcatttg ggctttatat aatgatattg aaaaaggcaa attaaaagat
     4861 ccaagagata tagattctac tccagaaagt agaaataaat ttgatgatgc tatggatgga
     4921 tacgaaaatg gaatggtaac aagatttgat gtagatatta gaaacgaaag agatgaaaga
     4981 tctgctaaac tgactatgga taccctagta ttaagcgcta aactagcagc cttaactcct
     5041 cctcaaggct atcctaatgc accttattat tttacacctg aaagattgga atggatttat
     5101 aaaagaggat atttagacaa actccttgat ccaagaattc ctgctattta tagatataat
     5161 tttccgcaag aacttcgagc taagataaga gcttatgcta aagagcataa tatcaaagag
     5221 taaaaatcac tcaaaatctt taatatactt ttccaatgct ttgatggtaa gattttcaaa
     5281 aagaatctta tcttctttga tattgttttg tatggcagct tcaatatatt taataaacat
     5341 attttcttcc atttcttcaa atattggagt atataattct tttgcgatta ggctaagggc
     5401 taaaatattg atcaatcttg tggatttgat taagggtata ttattaataa tactttcaaa
     5461 atctttgata ctaatagaag aataatcttt atttaattta gagctttgtt gttttgtttt
     5521 aatatctttt aaatttttta ccaaactttt taaaacattt tcatattcta atgaatttgg
     5581 atttttttga attatttctt ttaaaaagct atcatctgcc ttttcttctt cgataaattt
     5641 ataatcatta ttttctaaaa tctcttttaa ctctttgttt ttgtcaaaat ttatacttgt
     5701 ttttcctcta ggtttaattt caatttcatc aaaatgattg cgtttttcaa tatcttctaa
     5761 gtatttttta ttttctttaa tgcttgcttc aatgcttttt gcatccacaa atctaaattc
     5821 taaattaccg attttaaaaa tatcgcctat gctgattatt atttcatagc cacttggcat
     5881 tctagaaaag gacttattat aataaatgtc agaatcttca aaagccgcaa ttgtaaaaga
     5941 tccttcttca taagatacta tggcatgggt atttttgatt tgttctagtt tatcttgaat
     6001 acgaaaagtg caatcatcac cgcttcctat agttccaccc tttgtgttaa atacaaatgt
     6061 tttagaacca ctaatacatt cgtcataatt ctcaatagca attcctatct cttctttttc
     6121 tatcattgtt tatttacccc tgtaatattt tctactattt taagattatt taaaatataa
     6181 actatattat ttaattcact agcaccgtta ataatttcaa agtcaaaata taagttttta
     6241 ttattgttaa atataatgct gtatatagaa ttacttttat tatcttttat aaacttatac
     6301 catgcccatt ctcctttata tgattttgta taatttaaat taggattaga gtagttatag
     6361 gctgtaaaat ttaaacttgt tccattattg aatttttctg ctacaatttg tagggtttga
     6421 ttaagagtat gatcgtattg gatattttta ttatcatagc caagctttat aaaggaaaaa
     6481 tccgcactta aatcaaggct ttgaatagta aaattaactt ttatattatc attaccattt
     6541 agtatgagac tagagagatt gcctgcattg gtgataaaat ctaaaaattc tttagagaaa
     6601 tttaattttg aagcaaattg agaattgata gaatagttat tttttctttt tactaaaaca
     6661 ttgttcaagt attttttata aaaactattt aatgtcccat ttcttccaaa aaatgtttta
     6721 aaactatcca tactaagatc tgctacactc tcatcattaa aaggataata tggtgcaata
     6781 tcattaacaa atggattata cacttcatta atccaagcag tattaaataa agaaatacca
     6841 tgattttcta taaaattcca cgaataatta gaaagctgac tataatatct ctctaaatca
     6901 ttaggtaatt tttttatgtt catttgaaat acagcaaaag gatcattggc atctttattg
     6961 cctccaagag catatgaaat tttttcttca gcactttggt tattattaga actaaaatct
     7021 ataattttat tggacatatt tgtaatattt gtattaagaa tatctaatat tttttcatca
     7081 tcagtgcctt tgcccacttc tatattacca acactcaaaa gtgtattttt gtttactagc
     7141 ttatgatatt gtgtgaaagc attgcttacc ccaataaaat ttgatctaat ttccccagca
     7201 tttaacccta aattgtaggc ttgagttagt aaaactgcat catttaaatt tgtattagaa
     7261 ctaacaattt ttaacaaaga atataaaggg ttttcttttt ttgataagat attaagctca
     7321 ttaagcattg cctctttggt attataccta acaggttgca atgaagcgag tagattttgc
     7381 caagcatttt ggtattcact taagtataat tttaaaatac ccatagtcaa agtgttttta
     7441 ttttctttaa aattgttatc tagcatccaa gattcaatat tgattgcggt gtcaacttgt
     7501 tgatttaaat catttaaaaa gtccatcata ccaacttttg tatatatttt atctatagaa
     7561 gttatttgag aattatttga aaatacacta tttgcagcaa aacctaaatc ctcttttata
     7621 agatattttt ctttaggttt atcgctattt aaaaaattaa gaagaatgta aattctttga
     7681 gttctactta tactctcaag ttttcttttt cctgtatgta tactgttttc atcttctgta
     7741 aaagatttaa gattaaattg tttaagctca tccacccctt ctagaaagtc atctttagag
     7801 attgaatact tacttaaagt attccaattc tcgttaatcc aaatttttag tatttcttta
     7861 ttaaaatatt tt
//
LOCUS       DARGBD010000081         7732 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.081, whole genome shotgun sequence.
ACCESSION   DARGBD010000081 DARGBD010000000
VERSION     DARGBD010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7732
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.081"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1173)
                     /locus_tag="SFZ04_001415"
     CDS             complement(<1..1173)
                     /locus_tag="SFZ04_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEG8065666.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAY"
     gene            1268..2149
                     /gene="ppk2"
                     /locus_tag="SFZ04_001416"
     CDS             1268..2149
                     /gene="ppk2"
                     /locus_tag="SFZ04_001416"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HEG8065667.1"
                     /translation="MQENNSPKAQAVVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVHSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
     gene            2158..3348
                     /locus_tag="SFZ04_001417"
     CDS             2158..3348
                     /locus_tag="SFZ04_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8065668.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            3427..4599
                     /locus_tag="SFZ04_001418"
     CDS             3427..4599
                     /locus_tag="SFZ04_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEG8065669.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSNSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
     gene            4599..6524
                     /locus_tag="SFZ04_001419"
     CDS             4599..6524
                     /locus_tag="SFZ04_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8065670.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDFKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIKIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTIFTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            6526..>7732
                     /locus_tag="SFZ04_001420"
     CDS             6526..>7732
                     /locus_tag="SFZ04_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEG8065671.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMEELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLARQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYIL"
BASE COUNT         2852 a          980 c         1400 g         2500 t
ORIGIN      
        1 ataggcaatt aaaatgtaat tttcttcaat aattctagaa agtatccaaa tagccatagc
       61 caacataaca aaaccaaaga aaatttttac tttttccatc caaaaaccag gtttaataaa
      121 acctaatcct aagcctatga aaagcaaagg tatacccatg ccaaaactca tgataaaaag
      181 tgcactacca cctaataaag cattgcctgt attggctata taaattaaag cacctgctaa
      241 aggagctgct acgcaaggac ctactattaa agcagataaa aatcccatga tggctatacc
      301 tacaactccc ttcccttttt cgcttttttt atgtataaag gtttgaaatc ttaatggcaa
      361 ttcaaaacga aaagctccaa acatagcaaa agcaaaagct atgaaaatta gagcaaaaag
      421 aattaaaata ataggttttt gtaaaattcc ttgaatactt gctcctagaa aacttgctat
      481 aactccagca atagcatagg ctaaagacat gaaaaaaaca tagataaaag agagaaaaaa
      541 actatatttt tttgaaaatt tagcattact ttttgctacg ataagagaag ataaaatcgg
      601 aatcataggt aaaatacaag gtgttaagga gagtaaaagt ccatagccaa aaaaacttag
      661 caaaatccaa aaaaagttat ctgttgctaa aaaatttgct atagagcttt cttcagattc
      721 aattttagtt tttttatctg ttttttgagc tttgtaaggt tttgaaattt caaaagcatc
      781 ttttttagaa atgagatcaa agtaccaagt ttgaggatta taacacaagc cttgttcaga
      841 acagccttga aattcgagtt tgattaaatt tgtggtattt tttgcaaagc gctctagtaa
      901 taaatttggc aaagctaaat ttaatttttg ataataaaca ttttcattac ctcttgtaga
      961 actttgaggt agattaatca aagaacttat atctttttcg tttatatata atttaagttt
     1021 attagaataa agataaatat cttttccaag ttcaatatca attgagatag agttattata
     1081 agagtttgat tttacattaa aagcttcatt taaagataat atagaagcaa aacataaaca
     1141 aaaacttaat aaaataatac caaaaatacg cataaatttc ctaaaaactt attttttcct
     1201 ttatttttaa cttcaattat aatttattat ggtaaattta ctttaaatac tttataaagg
     1261 tttgaaaatg caagaaaata attctccaaa agcgcaagcg gttgttaaaa agaatgaaat
     1321 ttatgtttct gttaaaagaa agaaaagtac aatagaatat gaaaaagatt taaagaattt
     1381 gcaaattgag cttttgaaat ttcaaaatca tgttaaagcc aagggtttaa aggttcttat
     1441 acttatagaa gggcgtgatg cagctggaaa aggtggggcg attaaacgtt tgattgagca
     1501 tttaaatccg cgtggttgcc gcgttgtggc tcttgaaaaa cctagtgatg tggaaaaaac
     1561 acagtggtat tttcagcgtt atatagcaca tttgccctca gccggtgaga ttgtgatttt
     1621 tgacagatct tggtataatc gtgcaggagt agaaccggtt atgggttttt gtacaccgca
     1681 acaacataaa gattttttaa gagaagtgcc tttgtttgaa aatatgattt caaatagtga
     1741 tattattttt tttaaatttt atttttcagt atcaaaagac gagcaaaaaa aacgttttga
     1801 aaaacgccga agcgatccac ttaaacaata taaattatct cctgtggatc aaaaatcgca
     1861 agaattatgg gataaatata ctttagctaa atactctatg cttttagcat ctaatactcc
     1921 aacttgtcct tggactatta tttcttctga tgataagaaa aaagcaagat taaatttatt
     1981 gcgttttata ctttctaagg tagaatatcc aaataaaaaa actggagatt tttccaaaat
     2041 tgatgcaaaa ttagtgcata gtggagaaga agaaatacga aaaatggagg cgaatttgga
     2101 aaaacttgac agtaaaaaag cagatgagaa aataaaagat ttagattaag gaaaagaatg
     2161 caaaagctgg ttgaaaattt agcactaaag tactatgata aagtagttga tttaagacat
     2221 caaattcata tgcatcctga gcttgaattt gaagaagaaa atacagccca tttagtgtgt
     2281 aaaattttag atgagtttgg cattaaatat caaaaaaata ttgcaaaaac aggaatttta
     2341 gctattatag aaggaaaaaa gaagagtcag aaaaaaccaa aatgtgttct tttaagagcg
     2401 gatatggatg ctttgcctgt gcaagaaaaa actaatctaa gctatgcttc aaaaattgat
     2461 ggtaagatgc atgcatgtgg acatgatgga catacagcag ggcttttggg agctgctttg
     2521 atattaaatg agcttaaaga tgaattttgt ggcacgatta aatttatgtt tcagcccgca
     2581 gaagagggaa gcggtggagc taaacctatg atagaatcag gtgtattgga aaatccttat
     2641 gttgatgcag tttttggttg tcatttatgg gggcctttgc ttgaaaatac tgctcaaatt
     2701 gtaagtggtg aaatgatggc tggaacggat atttttgatt tggaatttat tggcagagga
     2761 gggcatggag ctcatccgca cacttgtata gatcctataa ttatgacaac gcaatttgta
     2821 aataatatac aaagtgttat ttctagacgt ttagcccctt atgaagcagg ggtgattacc
     2881 gtaggtcaaa tttgtgcagg aactacttat aatgttattc ctacaaatgc ttatttaaaa
     2941 ggaactgtgc gctttttaaa tgataaaacg caagatattt taaaaagttc tttagaagaa
     3001 gtggctgctg ctacagcaaa atccaatggc ggagattata agcttaaata tactaaagaa
     3061 tttcctccat tgattaatga tgaaaaagct gttttaatag caagaaaagc ttttgcaaag
     3121 gtcttaggag aagaaaatat cattgtttct tctaaacctg acatgggggc tgaagatttt
     3181 gcttttttaa cacgagaaag aatgggggct tatgtatttg ttggaatttc aaaggattta
     3241 aatcatccag ctttgcatca tagttctact ttttgttggg atgatgaaaa tttaaaagtt
     3301 ttaatgcagg gtgatgtgat gatggcttta gaatttttaa atttataaaa tagaattaaa
     3361 aattcacaaa aaattcacaa aaaatgagta aaatttaatc ttgatttttc tttaggattt
     3421 gttattatga aaaagaagat tgttttaatc attttaattg caatacttgg aagtgttggg
     3481 gcttatttta ttttttttaa taatgatgaa aaaatcagct atttaactca aaaaatacaa
     3541 aaaaaagata tatctcaaac catagaggca gtaggaaagg tatatgccaa agatcaagtc
     3601 gatgtgggtg ctcaagttag tggacaaatt ataaaacttt atgttgatgt gggaactcat
     3661 gtaaagcaag gtgatttgat cgctcaaatt gataaagata aacaacaaaa cgatttagat
     3721 attacaaaag ctcagcttga aagtgctaag gctaatttag agagtaaaaa agttgccctt
     3781 gagattgcga ataagcaata tcaaagagag caaaaacttt atgcagctaa agcaagttct
     3841 cttgaaaatt tagaaactca aaaaaataat tattatactt taaaagccaa tgttgcagag
     3901 cttaatgctc aagtagttca gcttgaaatc actcttaaaa atgcacaaaa agatttaggt
     3961 tatacaacca ttactgctcc tatggatggt gttgtgatta atgtagctgt agatgaagga
     4021 caaacagtta atgctaatca aaacactcct actatagtcc gtatagctaa tttagacgaa
     4081 atggaagtaa gaatggaaat agcagaggct gatgtgagta agataaaagt aggaacagag
     4141 cttgattttt ctttgcttaa tgatcctcaa aaaacttatc atgctaagat tgcaagtata
     4201 gatccagctg atactgaagt gagtgattct agtacaagct caagctcatc aagttcgagt
     4261 tcttcaagct caaactcatc aaatgctatt tattattacg caaaatttta tgtagccaat
     4321 aaagatgatt ttttgcgtat tggtatgagt atacaaaatg aaattgtcgt agcaagtgca
     4381 aaggctgttt tagcagtgcc aacttatgca attaaaagcg atccaaaagg ctattatgtt
     4441 gaaattttgg aaaatcaaaa agctgttaaa aaatatgtca aacttggcat taaagattct
     4501 atcaatactc aaattttaga aggtgtaaat gaagatgaag aattgatagt aagctcaagt
     4561 gctgatggtt tagctcctaa aatgaagttg agattttaat gatttttctt aaaaatattt
     4621 gcaaaaatat aggcgaaaat gccattttaa aaaatgtaag tttaagtata gaaaaaggtg
     4681 aatttgttgc tattatagga caaagtggaa gtggtaaaac ttcacttttg aatatcatag
     4741 gaacattaga tacaccaagt agtggaactt atgtttttga tgagtatgaa gtcactaaac
     4801 ttaataatga tgaaaaagca agattaaggc gtgaaaaaat aggctttata tttcaaagat
     4861 acaatctttt aagcttgctg agtgctaaag aaaatgtttc tttacctgca gtttatgcgg
     4921 gaaaaaattt acaagaaaga agtcaaaatg ctaaaaaact cttaaatgat ttagaattag
     4981 ctcacaagtt agattttaag ccaaacgaat taagcggagg gcagcaacaa cgcgtttcta
     5041 tagcaagagc tttaatcaat ggcggagagc ttattttggc tgatgagcca acgggagctt
     5101 tggatagtaa aagcggtatt atggtgcttg aaattttaca aaaacttaac gagcaaggtc
     5161 atactatagt cttagtaact cacgatccaa aaattgcagc acaagctaaa agggttatag
     5221 agattaaaga tggagaaatt ttaagcgata ctaaaaagga aaaagctcaa gaaaaactta
     5281 ttttaaaaac aatgcccaaa gagaaaaaaa cacttacttt gcttaaaaat caagcctttg
     5341 aatgttttaa gatagcttat tcttccatac ttgcacacaa acttcgttct attttaacta
     5401 tgcttggaat catcataggt attgcttctg tagtttgtgt tgtagcttta ggattaggct
     5461 ctcaagctaa agtgcttgag tctattgcaa gacttgggac aaatactatt aaaattcgcc
     5521 ctggaaaagg atttggggat ttgcgttcgg gtaaaacaag gcttaatttt agtgatttag
     5581 aaacattaag atctttagaa tatttagaag cagttgatgc tcattcaaat acttcaggag
     5641 tggcaactta taccaatatt tctttaagcg caagagctga aggagtaggg gtaaataatt
     5701 ttgctataga aggtttaagg atagatgcgg gaagaatttt aaataatgat gatgtaaaaa
     5761 atagtaccaa tgttgctgta ttggatttta atgctaaaaa aaatcttttt cctgatgaaa
     5821 aaagtgaaaa tattttaggt cgtgtggtgc tttttaattc tcaacctttt aagattatag
     5881 gagttttgca aaaagataca gacaagccta tagaagataa tgtagtacgt ctttatatac
     5941 cctatacaac actgatgaat aagcttacag gagatagaaa tttgcgtgaa atcatagtta
     6001 aggttaaaga tgatgtgagt tcaactttgg ctgaaaatgc tattataaga attttagaaa
     6061 ttaaacgcgg acaaaaggat ttttttactt ttaattctga cacttttaag caagctatta
     6121 cagcaaataa acgcactaca accatattta ccgcttgtgt ggctgtgatt gctttgattg
     6181 ttgggggtat aggagtgatg aatatcatgc ttgtttctgt aagtgaaaga acaagagaaa
     6241 taggcatacg catggctata ggggctagaa gagaagatat tatgatgcag tttttaatcg
     6301 aagcggttat gatttgtact ataggggcga ttttaggtgt gattttatcg atttttgtta
     6361 tttttgcttt taatacttta agtacggatt ttcctatgat tttaaatgcc tattctgtgc
     6421 ttttgggact tttaagttct atgtttatcg gtgtggtttt tggttttttc cctgcaagaa
     6481 atgcagcaaa tttaaatcct attagtgcat tatcaaagga ataaaatgaa aataatactt
     6541 agcatttttt tagcattttt cttgagcgct tgtggtgtaa aacttagctt gcctaaagaa
     6601 gttgatttaa ctcaagaaca aatgaaagat ttaaatctta cttatgattg gtatagatct
     6661 tatgataatg caaaattaaa tgaatttcta aattttgttt tattgaataa tagtgatatt
     6721 aatattgcta gaaaaacttt gctttcggct ttggctagag ctgatttgat tgattatgat
     6781 ttatatccga ctttaagtgg aaatttgggt tttggtgcgg ataaagattt aaattcaggc
     6841 aaacaaagta aaaatttcaa taattcttta aatttaagct atgagcttga tatttatggc
     6901 aaattaagag atagtgcaag tgcgagtgaa tttagtgcaa aagcaagtgc ttatgatctt
     6961 gaaaatttaa aaataagtat gatcaataca gctttaaatg atgtgtttga gctggcttat
     7021 tttaacgatg tagataaatt gcttcgagct tatctttcaa atttagaaca aatggaagag
     7081 ctttataatt ataaatacaa gcttggaaaa atagaagaat tagatctttt aaacatagaa
     7141 caaagcttat taagagctaa acaaaattta ttaagcaatg atcaaaatcg taatttactc
     7201 ataaaaaatt tacaagattt attggcaagg caagaaggtt ttgcttatat agagtatttt
     7261 aaaactttat ctttaaatga ttttaaaacc ttaagtcctg attttaatat acctttaaaa
     7321 gctttagcgt accgtgcaga tgtgagatct aaactcaata gcttaaaatc agcctttaag
     7381 gattattctt ccatgcaaaa atctattttg cctagtattt ctttaggtgg agcattaagc
     7441 ggaagtgata aaaaaatcga tgatagtttt aaatttgaaa ttttaagtgg caatgttaag
     7501 atttctttac ctttcttaga ttatggtagg gtaaagcaaa atatcaaaat ttcacaattt
     7561 acttatgagc aacttttaat ttcttatgag caagccttgc aaagtgcgat gaatgaattt
     7621 gcattgaatt ataaagatta tcaaagcgac accttgcttt tgcaaaattt gcaaaatatt
     7681 aacattaaac aagagcttat cactaaggcg tattatgaaa aatatatttt ag
//
LOCUS       DARGBD010000082         7661 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.082, whole genome shotgun sequence.
ACCESSION   DARGBD010000082 DARGBD010000000
VERSION     DARGBD010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7661
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.082"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(27..1958)
                     /locus_tag="SFZ04_001421"
     CDS             complement(27..1958)
                     /locus_tag="SFZ04_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG8065672.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFTKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYTFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(1962..3251)
                     /locus_tag="SFZ04_001422"
     CDS             complement(1962..3251)
                     /locus_tag="SFZ04_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG8065673.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAKDTRADLIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKILTKSFIYKGYKYIIIVYPRFLDLELFWTKMAIGFGVCLLFVFILMLLLGRRI
                     EKNFNKILDFLDSIGDHKVVILEKGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKI
                     TLKNTQLASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSVKLN
                     ALTHKLNFVFNLNSEALQMQEFDLFSLCEKITKNPGFERVALQGKSTKVKADEFLIEQ
                     VIINLLSNALKYSQKEVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSF
                     GLGLFLVKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            complement(3245..3907)
                     /locus_tag="SFZ04_001423"
     CDS             complement(3245..3907)
                     /locus_tag="SFZ04_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG8065674.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            complement(3894..5477)
                     /locus_tag="SFZ04_001424"
     CDS             complement(3894..5477)
                     /locus_tag="SFZ04_001424"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEG8065675.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKNGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            complement(5474..5962)
                     /locus_tag="SFZ04_001425"
     CDS             complement(5474..5962)
                     /locus_tag="SFZ04_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065676.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            complement(5962..7632)
                     /locus_tag="SFZ04_001426"
     CDS             complement(5962..7632)
                     /locus_tag="SFZ04_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEG8065677.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDGIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEINVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELNSSPV
                     QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRMKEREVLNEINNDDKVTLGDIIKDQLA"
BASE COUNT         2452 a         1376 c          881 g         2952 t
ORIGIN      
        1 agtaaaaaaa tataaaatct ttttaattat aaattctcgc ttttctctaa tactaaaaaa
       61 tactcatttt ctagaatttc aagttctttt tgcattactt caagttcttg ataaagcttg
      121 ttaataccta tttcttggta tacatttgga tcggataaat cttgatttaa tttagctatc
      181 ttttgctcta aaaaatctat tttttcggga tggtttttta atatctcatt ttctttgtag
      241 ctcaattttt tagagctttt ttctttttgg ttattatttt gctcttgggt ttgaagctct
      301 aaagcaaaat tatccaattc ttcaatttct ttttcatttt caagatattc agtataaaga
      361 gtgtgtaaaa tatttatata tccatttccc tcaaaagtat aaagttttgt tgcgatttta
      421 tcaacaaaat atctatcgtg tgatactagc aaaatagccc cttcaaaact aagtaaatat
      481 tcttctaata tattaatcgt agctatatca agatcattag ttggctcatc taaaatcaaa
      541 acatcatatt ctttagtaaa aagcaaggct aaagcaacgc gatttttctc tccgccactt
      601 aaaagagcta cgcttttatc taaaaattcc ttaggaaata aaaaattttt caaatatcca
      661 taaacatgca tatttttacc acgaacttca accctatctc caccattggg acaaaaaatt
      721 tcaagcaagc ttttatcgga atttaccaag cttctagcct gatcaaaata tcctatctta
      781 agctctccgc gttttatttc accgctatct tgttttattt gccctagaag aatttttaac
      841 aatgttgatt ttccacaacc atttcttcct acgatagcta tgcgttcacc ttgtaaaata
      901 cgcgttgaaa aatctttaaa aagattttta ttgtttatat ttttgcttat atttttaagc
      961 tcaaaaagca tttttttacg attgatcgtt ttttctccat taaaatttaa agccgctctt
     1021 gaaatttcaa gttttaagcg tttgattgcc ccaggatttt ttttcgcttc ttcacgcatt
     1081 ttaaaaatgc gttcttttcg tccttcattt cttttaagtc ttgctttaac ccctcttcta
     1141 agccattctt cttcgctttt taattgcttt aaaagagttt catggctctt agcaaggctt
     1201 tgcaaaattt gtgttttttt ctctaaatag tttgcatatc cgcctttaaa aatactaagc
     1261 ttaccctgct ctacttctac acacttgtgt gctatagcgt caataaaata tctatcatgg
     1321 gaaataaaaa tcacacacat ctttgaattt tttagcaatt cttccaaaaa gcttgtcata
     1381 tatacatcta aatgattagt tggttcatca agcaataaaa tatcaggatt ttttagtaaa
     1441 agtatgcaaa gcccaacgcg gcgtatttct ccaccactta aagtagatat aatgcgattt
     1501 tcatactcaa gtaaactaaa ttcttttaaa acgcgtatta ttttagattc tatactccaa
     1561 gcatctttac tatcaatcaa agtcataagc gtatctattt tttgaagata atctttatta
     1621 ctaggatctt cttctaattt tttatgcagt atttcatatt cttctaaggt attgtaaatt
     1681 tctacaagct cttgcttgat ggcttctttt acgcttaaat ttgcattaaa atcaacggtt
     1741 tgtgaaagca tggctatgct ttttccattt tgtcttatta ttctaccgct atctaaagga
     1801 agtgtgccta aaagcgtttt taaaaaagta gattttcctt ctccattttt gcctataata
     1861 gcaatctttt ctccctcgtt tgcgctaaaa tttacttcat ttaaaactat tttgtctcca
     1921 aatttttttg aagcttcaat taaatctata agagccattt tttatccttg actgagttta
     1981 aagctaaaac tagaaccata acctaaagtg ctagaaattt caagataact tttatgtata
     2041 tttaaaattt tctttactaa aaaaagtccc aaaccaaaag aattatcact ttttacatca
     2101 attttataaa atttttttgt aatcaatttt attttatctt cttctatgcc ttttccaaaa
     2161 tcttgcacta ttatcttttg atctcttgcc gttaaaatga cttctttttg actatatttt
     2221 aaagcattag aaagcaaatt tataatcact tgctcgatta aaaattcatc agccttaact
     2281 ttcgtgcttt taccttgcaa tgcaactctt tcaaagcctg ggtttttagt gattttttca
     2341 catagagaaa aaagatcaaa ttcttgcatc tgcaaggctt cactattaag attaaaaaca
     2401 aaattaagct tatgggttaa agcattaagt ttaacgcttt gacgtgaaat tttttctagt
     2461 aattcctttt ttaatttttt atcttccaat ttctcatctt ttagcatctc taagctaaga
     2521 tcaatcacgc ttaatggatt tttaagctca tgagaaatag cagaaatcac gctagcaagc
     2581 tgagtatttt ttaaagtgat tttatcgctt tgttttttat ttttttgggt attctttaga
     2641 attttatcct tagtttttaa aagtttctca tttagtaaat taaattcttt aaacattcct
     2701 ttttctaata taacaacttt atgatcccct atagaatcca aaaaatccaa aattttatta
     2761 aaatttttct ctattcttct acctaacaac aacattaaaa taaaaacaaa cagcaagcat
     2821 actccaaaac cgattgccat ttttgtccaa aaaagttcta aatctaaaaa acgaggataa
     2881 acaataataa tatatttata tcctttgtaa ataaagcttt tagtgagaat tttttttgaa
     2941 ttgaaattta aaatttctcc ttctttaaga ttagaaaaaa aatcaggatt ttttacagaa
     3001 cttattttca tatcattgtt taggataata agatcagccc tagtatcttt agcaaaatcc
     3061 ttgatattag catcatttaa atgctctaag agagaaaatt ttaaaacatc atcaaggctt
     3121 ttgatttttt gttcatattg ttttataagc aagaaattaa gataagaatt agtaaaagta
     3181 taaaaaataa acccaaaaat caaagccaat acaacaaaaa aaactataaa aatattttta
     3241 gtttttagca taatttatag ccaatacccc taacacttat aatatgatct tttagttttg
     3301 gaaatttatt tctaagtctt gttagagcta tattgattgt tttatcactt gtagtatcat
     3361 ctttccaaac actttcgctt aaaaattgtc tagtaagcaa ggtatttgga ttttcaaaaa
     3421 aacattttaa aagctcatag tcaagatttg agatttctaa tttttgattt ttgtaaaaga
     3481 attcataact aaccaaatct aaaataaaat caccaaaaga tagtttttct tcttcttttt
     3541 tatggcgttt taaaattgct ttaatgcgaa gcaaaagctc attgaaatca aaaggtttac
     3601 aaacataatc atcacaacca ctttcaaagc cttcgagtaa atcttgatgt aaagccttgg
     3661 ctgtaagaaa aataactgct tctttatatc cttgctctct taaatcttga attttttcta
     3721 aagaatctcc actgggcaaa tttctatcga ctattaaaag atcaatttgc tcattatcga
     3781 gcaaatcttc aactccaaaa aaatccgcta aagatataac ttcataacca ctagatttta
     3841 actttaaaac aagcagttcg tttaaatcta tatcatcttc tataattaaa attttaaatt
     3901 tcaacatatt ggacaaatac acacgcctct aattgtttta gttcatctaa tacttctttt
     3961 tgaacttttt catcaatcaa aacaacagcc aaagcatacc caaaaccatc tctaccaagc
     4021 ctaaaatcag ctatgttgat atttttagct gccaaaacgg aactgatttt agctataact
     4081 cctggtatgt ctttgttttt aaaaataatc atttttccct ttggcttaaa atcagtttta
     4141 aagccattta atccaactat gcgttgttca ttttcattaa acactgttcc tgaaacactg
     4201 atatttgaat tttcggtgat aattttaacg ctaagtttat tattataacc actatttgga
     4261 agagtttcgc aagataattc aactcctttt tctttggcaa caaattctgc attaacataa
     4321 ttaattttct ctcctaaaat tccacccaaa gcaccaacag ctgcaaaagt tagcatagaa
     4381 tttgcatact caccaataat tccttcagcc tctaatttaa tactttttat aggattttta
     4441 tcaatttgaa cagctaaaaa agccatttta gaaacaagtt ctatataagg agctacaaaa
     4501 ggtggtaagt cttcagtttt aattggtaaa tttaaggcat taggataagc cacgcctcgt
     4561 gctgcactta atgcttgctc acaagcttct cttgcgatat tgtcttgact ttctaaagta
     4621 tttgctccta ggtgagaagt aactgaaata ttttcaaagt ctaaaagagg atgattggtt
     4681 gcgggttctt tatcgaacac atctatacca agccatgcta ttttaccatt ttttaaacct
     4741 tcatataaag cctcttctgt gtataatcct ccgcgagcac aatttattaa tcttattcca
     4801 tctttcattt ttgcaatttc ttgctttcct atcataccat tggtttcttt ggtttttggt
     4861 gtgtgaatgg taataaaatc acttttttct aaaatttcat ccaaattttt tgcttgttcc
     4921 atatctaaat ctgtaatctt agaagcagaa atatacggat cataggctaa aattttcata
     4981 ccaaatgctt tagcacggat agctactctt gaacctatat ttccaaaacc tataacccct
     5041 agcgttttat tcatcaattc aatgccatac catttttctc tttcccattt tctttcaatt
     5101 tttaaaaaat tatgagcatt gacaaagctt ctagctgatg ttaaaagatg tgccattgtt
     5161 agttcaactg cggcaatagt atttgcagtt gggacattca tcacaatcac tcctcgttta
     5221 gaacactctg gaatatcaac attatctacg cccaccccag cacgcacaag cgcttttaat
     5281 tttttggcat gatttaaaaa atttacatct acatccgtag aacttctagt aattgcaact
     5341 tcaatatcgc ttagcatttg cataagttca tcttttggaa attttgcagc ttctataagc
     5401 tcaatatctt cagcttttct tagaatatcg acacctttat ccaaaatagc atcacacact
     5461 ataatctttt ttttcataac caaatttcct ttacttctgt atttatttta tattttttta
     5521 attctttgat aatatcatct ataagttttt cattgcctgt atccaaaaag atttctggac
     5581 tatcgccaga tttaagaaga aaatacttca cattaaaaga atttaaagtc tgtcttaagc
     5641 aaaacataga ataaatatca tattttccaa ctataagttg ataatattta tttttctcct
     5701 taagctcgct agtatccgca tcaaaatata aggtaaattt ttctgctgct ggggtaaaat
     5761 ctcttgtagg ccattttgct aattcttctt gccatgaaag atcttgattt tgggtttgaa
     5821 tgcttggctg cgtatttgta tctttagcaa attgtggaat gaaatttaca ttagctttaa
     5881 attgccaaag caatgtaaaa acaacagcaa gcaaaatgag taataaaata ctcaaaatgc
     5941 ttattgtaat gtattttttc attaagctag ctgatcttta atgatatcac ctaaagttac
     6001 tttatcatca ttattgattt cattaagaac ttctctttct ttcattctaa caagattttt
     6061 gacacttagg cgaattctat ttttcttttc atcaataaaa actatagcag cttcaatatc
     6121 gtcgccaatt tttaaatttt caagcataga agtgcttata tcttctttat gaattaaagc
     6181 atcaacattt ttacttagct ctacaaaaac accaaaatct ttaatatcac ggatagtgcc
     6241 ttttacaata tcgccgactt tatgaatttt ggcatattct tgcactggag aactgtttaa
     6301 ttcttttgtg cttaatgata ttttttggtt ttcttcatct attttgataa tttttacctt
     6361 gattttatcc ccttgagaga atttgtcttt acatttatcg tttctatccc aagaagcatc
     6421 ttcattatgc aatagacctt caataccgcc aagtttaaca aacgcaccaa aagaagttac
     6481 cgaggtaatt tctccttcaa ccacatccgc aattttgtaa gatttcataa attcatcaaa
     6541 aggtctagaa agtaaatttc ttaaagaaac tcttaagcgt ctttcatttg gattgatttc
     6601 aattacttca acattaattt cttgaccttt gttgatataa tcttttggat ttttaatatt
     6661 tttatcccaa gaaatttcac tgatatgtaa aaatccttct atatcatttc ctaaatccac
     6721 aaaagcacca taaggctcta tatttgatac tattacttta atggtatcac ctacatcaag
     6781 agtatctttt atctcgctcc atggatcggg taaagccgct tttatagaca aggataaatg
     6841 tttgcgttct ttatcatact ttataacttt aactggaacc ttatcaccct ctttataaag
     6901 tgttccagga tttacaggtc ctttgtaaga aatttcgctg taatgaacaa gaccatcaac
     6961 acctcctaca tccacaaaca taccataagt agtaattttt ttcacaatac cttcaattaa
     7021 atcttcttgt tgtgctacat tattgatcaa ttctttgcgt tttcttctct cgtcatctaa
     7081 agttttttta cgagaaacaa tgatactttg ctcatctttg tcgattttaa taattttaac
     7141 tttaaacgtt ttgcctataa tattatttgt ttctttgaag ccatattgag attttggtaa
     7201 gaaaaattca acatcatttt catcaacaac tatcaatccg cctttatttt ttccaactac
     7261 ttttacggta aaaatatcat cttgattttc ttgatagttt ttaataaatt cgataacttt
     7321 ttcttttctc aaagcttttt tatgagaaag taaagatctg ccaccacgag aacccataac
     7381 agcaacttta ataccatcgc ctacattaaa taatagctta gaattgtcat cttgtatttc
     7441 gctaagagct aaaatacctt cagatttttt acctatatct acataaactt catcattttt
     7501 gatctctaca atcacaccct ctgttgtagc ctcttctctt gatttatcaa aagcttctaa
     7561 aagctgtcca aaatcttctt cctcaagata atcatctacg ccgccttgaa cttttttgtt
     7621 cacctcgctc attatggtcc tttaaaataa tttttagaaa t
//
LOCUS       DARGBD010000083         7399 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.083, whole genome shotgun sequence.
ACCESSION   DARGBD010000083 DARGBD010000000
VERSION     DARGBD010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7399
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.083"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            87..698
                     /locus_tag="SFZ04_001427"
     CDS             87..698
                     /locus_tag="SFZ04_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065678.1"
                     /translation="MEKSLLFHFRRIGVEFIIFSVYAVFSISWAATGSLMPLISNDLA
                     LNTQQTTLITTMIVVAKIFGPYLGLFFKRKNISFKIMLLSGGACIFICGFCMLFLQNL
                     VLIQIFAVLSGIFYSMWFPFFFNLPSELKNSNPNQTAYIMSAFWSITFVILSFNLWVV
                     SWSVDKTHSFTLGFVYIFALIFISAILAQFVLPRRENFIQGEK"
     gene            700..1851
                     /locus_tag="SFZ04_001428"
     CDS             700..1851
                     /locus_tag="SFZ04_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG8065679.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIVTIKMSVRALDNETRKLTEEKIYKICK
                     GLAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(1855..2595)
                     /gene="yaaA"
                     /locus_tag="SFZ04_001429"
     CDS             complement(1855..2595)
                     /gene="yaaA"
                     /locus_tag="SFZ04_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEG8065680.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYGEF
                     IKNASLKNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDEYLENK
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQIKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIVLEILD"
     gene            complement(2689..3807)
                     /locus_tag="SFZ04_001430"
     CDS             complement(2689..3807)
                     /locus_tag="SFZ04_001430"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065681.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLAKDNNNEYQELFQAKNIKIRSNEIY
                     KGEANASISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKIRSFI
                     NKLSSDSYTLSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLAMDEQAINELLNIANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     ITTAKENLQTLKTQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGALF"
     gene            4028..4867
                     /locus_tag="SFZ04_001431"
     CDS             4028..4867
                     /locus_tag="SFZ04_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG8065682.1"
                     /translation="MKKILLSVLTTFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKENNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            4908..6155
                     /locus_tag="SFZ04_001432"
     CDS             4908..6155
                     /locus_tag="SFZ04_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8065683.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICFIFSIAFIIFGVLFSFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(6138..>7399)
                     /locus_tag="SFZ04_001433"
     CDS             complement(6138..>7399)
                     /locus_tag="SFZ04_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEG8065684.1"
                     /translation="VIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKAGNI
                     HAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMSAMA
                     EFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEASLS
                     FNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGGERI
                     NSIPKHAKALVHFKDEIKSNNWIKCEFKEEGEFEICDQSKKLLSLINSFTHGVRAYDE
                     NLDIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRSFNF
                     YPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNIHNP
                     HSTDEHCEIASVEKISKVVFEVLKDNA"
BASE COUNT         2302 a          976 c         1241 g         2880 t
ORIGIN      
        1 taattaaatt aaaaaaataa ttaaagataa taaatatctt atttttttat gttatatttt
       61 aatagatatc taaaaaggat tttaatatgg aaaaatcact tttatttcat tttagacgca
      121 ttggagttga atttatcatt tttagtgttt atgctgtttt tagtatctct tgggcagcga
      181 cagggtcttt gatgcctttg atttcaaatg atcttgccct aaatactcag caaactactt
      241 taatcactac catgatagta gtcgcgaaaa tttttggtcc ttatcttgga ttatttttta
      301 aaagaaaaaa tatttctttt aaaataatgc tattgtctgg aggagcgtgt atttttatat
      361 gcggattttg tatgttattt ttacaaaatt tagtattgat acagattttt gctgtgttat
      421 caggcatttt ttattctatg tggtttccat ttttctttaa tctaccttca gaactaaaaa
      481 attccaatcc aaatcaaact gcttatatta tgagtgcttt ttggagtatt acctttgtta
      541 tactatcatt taacctatgg gtagtatctt ggagtgttga taaaacccat agttttactt
      601 tgggttttgt ttatattttt gctttgattt ttatttcagc gatcttagca caatttgttt
      661 tacctagaag agaaaatttt atacaaggag aaaaatagaa tgaatttaat tccagaaata
      721 ctagacttac aaggcgaatt tgaaaaaatt cgtcatcaaa ttcatgaaaa tcctgagctt
      781 ggttttgatg aattatgtac tgcaaaatta gtggcgcaaa aattaaaaga atttggttat
      841 gaggtttatg aggaaatagg aaaaacaggc gttgtggggg ttttaaaaaa ggggaatagc
      901 gataaaaaaa taggacttcg tgcagatatg gatgctttgc ctttgcaaga atgcacaaat
      961 ttgccttata aaagcaaaaa agaaaatgta atgcatgctt gcggtcatga tggacatact
     1021 acttctttat tgcttgctgc aaagtattta gcaagtcaga attttaatgg cactttaaat
     1081 ctttattttc aacctgctga agagggtttg ggtggtgcta aggcaatgat agaagatgga
     1141 ttgtttgaaa aatttgatag tgattatgtt tttggatggc acaatatgcc ttttggtagt
     1201 gataagaaat tttatcttaa aaaaggtgcg atgatggctt cttcggatag ttatagcatt
     1261 gaagttattg gaagaggtgg tcatggaagt gctccagaaa aggcaaaaga tcctatttat
     1321 gctgcttctt tacttgttgt ggctttacaa agcatagtat ctcgcaatgt tgatccccaa
     1381 aattcagcag ttgtaagcat aggagctttt aatgcaggac atgcttttaa tatcattcca
     1441 gatattgtaa cgattaaaat gagtgttaga gcattagata atgaaactag aaagctaact
     1501 gaagaaaaaa tttataaaat ttgtaaaggt cttgcacagg ctaatgatat agagattaaa
     1561 atcaataaaa atgttgttgc accagtgact atgaataacg atgaagctgt ggattttgct
     1621 agtgaggttg caaaagaatt atttggcgaa aaaaattgtg aatttaatca tcgtccttta
     1681 atggcaagtg aggattttgg atttttttgc gaaatgaaaa aatgtgccta tgctttttta
     1741 gaaaatgaaa acgacattta tttacataat tctagttatg tttttaatga taagctttta
     1801 gctagggctg caagttatta tgcgaagcta gctttaaaat acttaaaata aaaactaatc
     1861 tagaatttca agcacaattt cttcctttaa acctttgatt tgaatttctt tgagttttag
     1921 gtttgaagga aggtttgcta aaagctcttt attgtttttt atttggtttt ttgcacttat
     1981 ggagagtaaa attcccctat aagctttagc aaaatgactg atgactttac cattttttac
     2041 aaatttataa gtataaaatt tcttttttgg ggtgtagaat ttatcataaa atcctgctct
     2101 aaggtcaagt atttctttat tttctaagta ttcatctaag gctttactaa aatgttcttt
     2161 ataaaatttc tctatggcaa aatttcctat tttagcccct tgcttgaatt tataaaaagg
     2221 tagggtatca ttagctctta caacgccaaa aagattagaa aatataagag tattttctaa
     2281 aatataagct tgactttttt tatctaaagc tttaaaatta agatattcat aacttacccc
     2341 agtataaagc aatatagctt cttgagtggg agcttgtttt aagtcgtgtt taaatttatc
     2401 aatttcattt tcgtttttaa tgccaaaaag ttcttgtaaa ttttttaaac ttgcattttt
     2461 gataaattct ccataatgct ttaaagcttc cattctataa ggaaataatt ctttaaatat
     2521 aaatgagttt tcatcgatgg gattttttgt acaattttca tttttgcttt cactagggga
     2581 gaataaaatt ttcattttag cctttttttg ttaatgttat gaaaacatta agagcaaaga
     2641 aatttaatct tgcttttaat gtttttgaag tttttatcat tttaaaattt aaaataacgc
     2701 tccgcccatt aacatagaaa acatgataaa tggaagtata atttttaacg cttctgtggc
     2761 atcttgattg ttgatgctta gtttttctat gctgtcgatt ccctgtgtgc tatagtcact
     2821 aacagggatg tttttaaatt ttaaatcaag attgagttta taatcatcat tttgagtgat
     2881 attgtttaaa atagctaaag ctttatcaaa gattaatgct tgttcttcat tttgactttg
     2941 agtttttaag gtttgtaaat tttccttagc agttgttata tagctactaa atacgccttc
     3001 ggttttaaga gttgaatcaa ttttaaaatt gtttaagatg atgtattttt ggattgtatt
     3061 gctaaaatct gaagcttgtt cgtagtttgc tatattaaga agttcattga tagcttgttc
     3121 atccatagct aaagtttgag tgttaaattt tataccctta gaatcaaggt aattaagcaa
     3181 atcttctttt agatttatat ttagatttgt attgaaattt aattttgcgt tataaaattt
     3241 tatatcaaga ttatctagat aattgttttc ttgtttgttt atagagttat caaatgataa
     3301 agtataagaa tccgagctta atttattgat aaaagatctg atttttggat cttgttgaaa
     3361 taagcttgca ttgatgtcac taacaacttt ttctccaagt ttaaaatctt caaaaaccaa
     3421 atttgattgt atgctttttt ggtttttaaa aagatcgttg taatattctt taatgctaat
     3481 tgatgcattt gcttcgcctt tgtaaatttc atttgagcga attttgatat tttttgcttg
     3541 aaatagttct tgatactcat tgttattatc ttttgcaaga gttttgaaat ttggacttaa
     3601 acacgctata aaatcaccat ctgcattgca tttaaaatca gaaaattcaa tctttattcc
     3661 agagtcctga gaaagacttg caatttcttg tttaactgtt tgatttagtt gattttcata
     3721 ttttttaact gttttttcat ctatggaatt tccgcaagct gaaaacaaaa cagctattcc
     3781 aatagagaga aaaatacctt ttttcatagt tttctcctta aaaaatttaa aaaaaagatt
     3841 atatcttttt ttacttaaaa tttaaacaat actaaaagag agtgtgtgat taattacatt
     3901 tttacacata ggaaaatctt tttagtttgt ttcaaatgca ttatttataa ttttaagtat
     3961 aattaacttt gcaattatta tatatttttg caacagcttt aagcttattt ttaaagaaag
     4021 gaaatgtatg aaaaaaatac ttctaagtgt tttaacgacc tttgttgcag tagtattggc
     4081 tgcttgtgga ggaaattctg actctaaaac tttaaattct cttgataaga tcaagcaaaa
     4141 tggagttgtt aggattgggg tatttggcga taaaccacct tttggttatg tagatgaaaa
     4201 agaaaacaat caaggctatg atatagcttt agctaaacgc atagcaaaag aactttttgg
     4261 cgatgaaaat aaggtgcaat ttgttcttgt tgaagctgca aatagggttg agtttttaaa
     4321 atcaaataaa gtagatatta ttttggctaa ttttactcaa actccgcaaa gggcagaaca
     4381 ggttgatttt tgcttgcctt atatgaaggt agctttaggc gtagctgtac caaaggatag
     4441 taatataact agcgtagaag atttaaaaga taaaaccttg cttttaaaca aaggtacaac
     4501 agcagatgct tattttacgc aaaattatcc taatattaaa actttaaaat atgatcaaaa
     4561 taccgaaacc tttgccgctt tgatggataa aagaggcgat gctttaagtc atgataatac
     4621 cttgcttttt gcttgggtga aagatcatcc tgattttaaa atgggtatca aagagttagg
     4681 taacaaagat gttatcgcac cagcggttaa aaaaggcgat aaagaactta aagaatttat
     4741 cgataatttg atcattaaac taggccaaga gcagtttttt cacaaggctt atgatgaaac
     4801 tttaaaagct cattttggag atgatgttaa ggctgatgat gtagtgattg aaggtggaaa
     4861 aatttaataa agggcttttt gccctttata ttgatttagg ataaaatatg caaaaaaaat
     4921 acaaaaatat tatttatgct tctttgggtg gaattttaga attttatgat tttgtgcttt
     4981 ttgccttttt tttggatatt tttgctaagg tattctttcc gcaaaatgat gctttttgga
     5041 tgcagataaa tgcttatata gcctttggtg ctgcttattt agcgcgtcct tttggttcta
     5101 ttgtgatggc acattttgct gatagatatg gaagaaagaa tattttttat atttctatgc
     5161 ttttgatggt tttgcctagt tttgctttag cttttttacc aagttatgaa agtataggta
     5221 tatttgctac tttgatttta tttactattc gtattttgca aggtttagcc gttggaactg
     5281 aggtgagcgg agcttggatt tatgtgagcg aatttgttaa agggcgtcaa attcctttgg
     5341 ctcttggttt tatttcagcg actttaacca taggtttatt gctaggaaat attgccactt
     5401 taggcataag atcttatttt accccagaag aagttcaaag ctatgcttgg agaattcctt
     5461 ttatcatagg aggatttttt ggaattttag ctttgttttt aagaaataaa ctcagcgaaa
     5521 ctccagaatt tataaaagtt caaaatgaaa agaaaatttt aagttttcca ttgtttgaag
     5581 ctttgaaaac tcataaaatg agtatgcttg tttgtttttt aatgaccatg gttttaacaa
     5641 gcggtgtggc aactttgatg attttaccta agtattttga aagtctttta gctatgagta
     5701 aaacttctgc tttatgggtg caaaattttg ctattttagc ggtgattttt ggagctttat
     5761 ttcaaggttt tttagcaagc aaatggggaa gctataggat ttgttttatt tttagtatag
     5821 cttttattat ttttggtgtg ctttttagtt tttatgatga gaatttttta ttttattttt
     5881 tactggcttg ttttgcacaa ggtattatta ctttcgcgcc tgtttttatg acgcaaattt
     5941 ttaaaagtga actgaaattt agcgggctta gttttgctta taatatttct tatgcgattt
     6001 taggtttttt aacccctttt atagttaatg ctttttataa agagtatttg ggtatttatc
     6061 ttgctatagt gggatcttgt tccttgcttt gcgtgttttt gttaaaacgc gtttttgcaa
     6121 gaagcaagat taaagaatta agcattgtct tttaaaactt caaaaacaac cttagatatt
     6181 ttttcaactg aagcgatttc acaatgctca tcagttgaat gaggattatg gatatttggg
     6241 cctatagaag cgcataaaag ctcttgtttt ttctctataa tgccacactc aagccctgca
     6301 tggatagctg aaactttggc attaggcgat acttttttaa gcgctttaaa aaccatgtcg
     6361 ctaagtgcgt ttggtttgcc ttcccaaggt ggatagaaat taaaacttct tactttaaaa
     6421 tcaaaagcct tgaaaaattc taaagtttca aattctactt gcttaagtcc atcaagtata
     6481 ttagatcttg caaaaagtgc gaatttgatt tggttatctt gcattcttaa agtagctagg
     6541 ttaatgcttg tttgaactat atctagattt tcatcataag ctctaactcc atgagtgaaa
     6601 gaatttataa ggcttaaaag ttttttactt tgatcgcaaa tttcaaattc gccttcttct
     6661 ttaaattcac attttatcca gttattactc tttatttcat ctttaaaatg cactaaagct
     6721 ttggcgtgtt taggtataga attgattctt tctccgcctt caaaagaaat gatttctcct
     6781 tcattttctt gtatgaattt agccatttct ttgatggaac ttttttcatt gcgtatgata
     6841 tttatgcctg agtgtccacc tttaaaattt tgcgcacaaa gctcataaat tttacccttt
     6901 tttctaaggg tattaaaaga caaacttgct tctatatcta ctccacctgc acagcctatc
     6961 atgatctcat catcgctttc atgatctaaa tttaaaagca ttttagattc taaagtgtgc
     7021 tcgagtgaat tcactcccat gagtcctact tcttcatcgt ttgtaaaaag acattctaaa
     7081 ttttcaaatt cagccatagc actcatcatg atggctatac ctatgccatt atctgcacca
     7141 agacttgaat ttttggctct taaaaagcca ttttcttcat aaacttctaa gtttggtgca
     7201 tcgcccatac agaccatatc ataatggctt tgtagacaaa tttttggttt gccttttatg
     7261 gcatggatat ttcctgcctt atctacactc accttaaagc ctttatcttt ggcgtaagag
     7321 cttaaaaatt ctttcatttg ttctgtttca taactgcaat gaggaatttt gcataattgt
     7381 ttaaaatttt ctataacat
//
LOCUS       DARGBD010000084         7360 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.084, whole genome shotgun sequence.
ACCESSION   DARGBD010000084 DARGBD010000000
VERSION     DARGBD010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7360
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.084"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1453)
                     /locus_tag="SFZ04_001434"
     CDS             complement(<1..1453)
                     /locus_tag="SFZ04_001434"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065685.1"
                     /translation="MDEELFWENIVPVGHINEETLKSQIYINNINFSTLQYDETVLPT
                     ELECCYNEFKYYQKSNNEIATLGWAISYQLQVLWQNSPKIDTIQNYHLPVKQNKPNNP
                     QAEQRLKEIQNFLQSKGIEPLILHYTPYPNNTQTQEMKRLRQNSERFSRHVDNKTNEV
                     REERRSIKFYTTLDWDKFYSHFPIIKRLSKKFHTKEDIYTQNFTKQIEIILQKTHNIL
                     ILKNLPQGEYKFDFAIDIKENRSDKNEESYFIIKENDEISKDYKRILDCKPYELDTLN
                     CQYIGVGDDEFFRQIWQNLGINIAEKFKVDFSYARLDKFIFATSPFGLTYNTYETLEQ
                     TYDELMQDLSLYACSGKFSFNFVPSKLSIKKEIQGDREKVSYRVDEMLVYVYDSFDFL
                     DQGHEFDDEGNFIKLGQPVGAWDFNTKTFNIEGSLYQMATYREWLEWEIDGYKIDCSI
                     SPQRILQSPKTKQYYLYNQDYQDYQKFTPYGLDF"
     gene            complement(1595..1912)
                     /locus_tag="SFZ04_001435"
     CDS             complement(1595..1912)
                     /locus_tag="SFZ04_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065686.1"
                     /translation="MIGKDFLYSIHKDKKSIYLFCENKSIIDCQSIYDELYKLEATTD
                     FTFEELQNYQAYIFLNSTLLTGSNELPNNPFYFGELDQDNAIKQDTPSYYFSPSNEFK
                     CKS"
     gene            complement(1920..3443)
                     /locus_tag="SFZ04_001436"
     CDS             complement(1920..3443)
                     /locus_tag="SFZ04_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEG8065687.1"
                     /translation="MEELINNLRGYAELAQASYFNFMYINNDEREMDSYKIGQNRFPK
                     DKDNIENLEYTKTLSKKYKDYFIYDDSIALYPTLNGEFGEIQAKNFAKKYEIKFHQPN
                     TASGFSATLFYDKEKDKFVVGFRGTEGLWSMDTLADIGLTFGKGDFQLNALKQFLLDI
                     APILNKVDSNNIIFIGHSLGGYLAVIAMQFCDTIDRSLNTQFNAIKFMASQVYTFNSP
                     AIDEIDNMLMRALAALLDKNIMEQVLNPQKVYCVYDSGGINIIASAQYGSHNRLPIYT
                     GKDSHSIIPLTQTLYFYSYLLELDANHNKVKDKSFSECIEYLNHFIKNIQIYTETFVL
                     KNNATNKNSSFGFNKNHPEKINHFEYSLSLIATIMQETNGILEELGDSYYTSYKAPTI
                     SQTKIIDFILKAQEKEKYILILDKNDFNKYRKDCSFINNQENLAHKIAIGEFRIFIVV
                     YKDMKCLENINNITKIYGYNSKSYKIKDQIWDEQYLGGVCKISQALYFNGKAKIGII"
     gene            complement(3700..4092)
                     /locus_tag="SFZ04_001437"
     CDS             complement(3700..4092)
                     /locus_tag="SFZ04_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065688.1"
                     /translation="MNNKEQIKKLRDNAELAWASYGYFDFIDKQYSFDEKDKDKFKTL
                     YAKINDLKKSDEKVQNAKATYTDILNMEYNSLFDGEFSPLQAKQFFERYDLLIHQTNT
                     ESSFSAALFYDTHKDGFVVWFRETECGF"
     gene            complement(4089..4625)
                     /locus_tag="SFZ04_001438"
     CDS             complement(4089..4625)
                     /locus_tag="SFZ04_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065689.1"
                     /translation="MIRLKKILKISSFILLPLIIIWSMIFGWGWFVPYSLQPSYHEFK
                     EMCKLEPKIYQSNGGKIDKEYYNKLLAYFNTNFEEVLQGNKGMANVSNSQYIQRENIE
                     LYSFNEDRDKGRLSFSLGLDIEKNKTTNEILPLKKVFFYVEWYNRRKYLTTKSVASYE
                     LEWRENYENFAYFKKEIK"
     gene            complement(4626..5618)
                     /locus_tag="SFZ04_001439"
                     /pseudo
     CDS             complement(4626..5618)
                     /locus_tag="SFZ04_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935932.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
     gene            6109..6696
                     /locus_tag="SFZ04_001440"
     CDS             6109..6696
                     /locus_tag="SFZ04_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HEG8065690.1"
                     /translation="MVVNGVSENKIKAKNKDVNINNGTKYTNTTKSNNISSSENNTQE
                     KITHLSNDGQNLLKNIEKLRLKPYNDQNGKEITSYVKGATIGYGHLIGQNEWDLYKNG
                     ITLQEADKLFKSDLLPFENAVKNSINSSLAQNEFDDLVILCFNIGIDNFKNSFVAKII
                     NAEKTGYKTLKEAWMAWNKSQNKVMQGLINRRNAE"
     gene            6725..7084
                     /locus_tag="SFZ04_001441"
     CDS             6725..7084
                     /locus_tag="SFZ04_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065691.1"
                     /translation="MVIFKNILLFLFFSTYLLAQEDFTPLEQCTYENEKFWIKILNLC
                     PEGNITCDKVVYVGVNKNNGKYIVLNGKSISDVNMNFKGYVFKNGIYEYNIFNNFLYI
                     SKNKQIIQEYRLKLCEK"
BASE COUNT         2513 a         1084 c          990 g         2773 t
ORIGIN      
        1 taaagtccaa accataagga gtgaattttt gatagtcttg ataatcttga ttgtaaagat
       61 agtattgttt ggtttttgga gattgcagaa ttctttgagg gcttattgaa caatcaattt
      121 tatatccatc tatttcccat tcaagccatt ctctataagt tgccatttga tataaagaac
      181 cttctatgtt aaaagttttc gtattaaaat cccaagctcc aacaggttgt cctagcttga
      241 taaaatttcc ctcatcatca aattcatgtc cttgatctaa aaaatcaaag ctatcataaa
      301 cataaacaag catttcatca acgcggtatg ataccttttc tctatctcct tgaatttctt
      361 ttttaatgct taattttgaa ggaacaaaat taaaagaaaa tttaccacta caagcataaa
      421 gagatagatc ttgcatgagt tcatcataag tttgctctaa agtctcatat gtattataag
      481 taagtccaaa tggcgatgtc gcaaaaataa atttatcaag tctagcataa gaaaaatcta
      541 ccttaaattt ctctgcaata tttataccta aattttgcca aatttgtctg aaaaactcat
      601 catcacccac acctatatat tgacaattta aagtatcaag ctcatagggc ttacagtcta
      661 aaatgcgttt ataatctttt gaaatttcat cattttcttt aatgatgaaa taagattctt
      721 catttttatc gcttcgattt tcttttatat cgatcgcaaa atcaaattta tattctcctt
      781 gaggtaaatt ttttaatatc aaaatattat gagttttttg taagattatt tctatttgct
      841 ttgtaaaatt ttgagtgtat atgtcttctt ttgtatgaaa ttttttactt agtcttttta
      901 ttataggaaa atgagaataa aacttatccc aatctagcgt agtgtaaaat ttaatagaac
      961 gcctttcttc tcttacttca tttgttttat tatctacatg gcgcgaaaaa cgctctgaat
     1021 tttgccttag tcttttcatc tcttgggttt gtgtgttgtt tggataaggg gtataatgta
     1081 aaataagagg ttctatacct ttactttgta agaaattttg tatttctttt agtctttgtt
     1141 ctgcttgggg attattaggc ttattttgtt ttacggggag atgataattt tgtattgtat
     1201 ctatcttagg gctattttgc cacaatactt gaagttgata gctaatagcc caacctagtg
     1261 ttgctatttc attattgctt ttttgatagt atttaaattc attataacaa cactctaatt
     1321 ctgtaggtaa cactgtttca tcatattgta aagtgctaaa atttatatta ttaatataaa
     1381 tttggctctt taaagtttct tcattaatat gtcctactgg aacaatgttt tcccaaaaaa
     1441 gttcttcatc cattatttca tcctattgtt tttatatttt agaaattcct taagcatgtt
     1501 ctcatttaaa tttatagaat acctagtcca gcacattcta gcatatttat aaagtttcat
     1561 atatttggct tgttttcata tattatttta tcctttatga tttgcatttg aattcattac
     1621 taggagaaaa ataataacta ggtgtatctt gttttatggc attatcttga tctaattctc
     1681 caaagtaaaa aggattgtta ggaagttcat ttgagcctgt aaggagggtg gagtttagga
     1741 agatataagc ttgatagttt tgaagttctt caaaagtaaa atctgtcgtt gcttctaatt
     1801 tataaagttc atcataaata ctttgacaat caattatgct tttattttca caaaacaaat
     1861 aaatactttt tttatcttta tgaatagaat ataaaaagtc tttacctatc ataattttcc
     1921 taaataatac ctattttagc ttttccatta aaatacaaag cttgtgatat tttacaaact
     1981 ccacctaaat attgctcatc ccaaatttga tcttttattt tataactttt tgaattatat
     2041 ccatatattt ttgttatatt attaatattt tcaagacatt tcatatcttt ataaaccaca
     2101 atgaaaattc taaattcccc aatggcaatt ttatgagcta agttttcttg attattaata
     2161 aaggaacaat cttttctgta tttattaaaa tcatttttat caagaattaa aatatatttt
     2221 tctttttctt gcgcctttaa aataaaatct atgatttttg tttgactaat ggtaggagct
     2281 ttataacttg tataataact atctccaagc tcttctaaaa taccatttgt ttcttgcatt
     2341 atagtggcta ttaatgaaag agaatactca aagtggttaa tcttttctgg atggttttta
     2401 ttgaacccaa aagagctatt tttattagta gcattatttt ttaacacaaa agtttctgta
     2461 tatatttgaa tattttttat aaaatgatta agatactcta tacactcact aaaactttta
     2521 tctttgactt tgttatggtt agcatctaat tctaaaagat aggagtagaa gtaaagagtt
     2581 tgagttaggg ggattatgga gtgagaatct ttacccgtat agataggcag tctattgtgt
     2641 gagccatatt gagcagaagc gatgatattt ataccaccgc tgtcatagac acaatatact
     2701 ttttgaggat ttaagacttg ctccataata tttttatcta ataatgctgc caaagcccgc
     2761 attagcatat tatcaatctc atcaatagca ggagaattaa aagtatagac ttgcgatgcc
     2821 ataaatttga ttgcattaaa ttgtgtattt aagctcctat caatagtatc gcaaaattgc
     2881 attgctataa ctgctaaata tccgcctaaa gaatgcccta taaaaataat attatttgaa
     2941 tctactttgt ttaaaatagg tgctatgtct aataaaaatt gctttaaagc attaagttga
     3001 aaatcgccct taccaaaggt aagccctata tccgccaaag tatccatact ccaaagtccc
     3061 tctgtccccc taaaccctac tacaaactta tctttttctt tatcataaaa caaagtagca
     3121 ctaaagccag aagccgtatt tggttggtgg aatttaatct catatttttt agcaaagttt
     3181 ttagcttgaa tctccccaaa ttctccatta agtgtcggat atagtgcaat ggaatcatca
     3241 taaataaaat aatctttata ttttttagat aaggtctttg tatattctaa attttctata
     3301 ttgtctttat ctttagggaa tctattttgc cctattttat aactatccat ttctcgctca
     3361 tcgttattga tatacataaa gttaaaataa cttgcttggg ccaactcggc atagcctctt
     3421 agattgttga ttaattcttc catttagtct cctaaagtta atttagcacc aaaaacagag
     3481 caaatgccaa agggtaatat aaaaacaata ttaaaaaatt ccttaaatat tttttaattc
     3541 ttgttattcc aaaaagccat agattggcta tcattagtgg aaagactatc caaccaagca
     3601 ttataaaaaa ctcctcaacc ctatttggat tatgtccaac aataggagat ataaaccaac
     3661 ctacaacaca taatataatc caacaaatat aaagtatttt tagaatccgc attctgtttc
     3721 cctaaaccac accacgaaac catctttgtg tgtatcatag aacaaagcag cagaaaagct
     3781 tgactctgta tttgtttgat ggattaataa atcatatctt tcaaagaatt gtttggcttg
     3841 gagtggggag aattcgccat caaataagga attatattcc atattgagaa tgtcggtgta
     3901 ggtagctttg gcattttgta ctttttcatc gcttttcttt aaatcattta tttttgcata
     3961 taaagtttta aacttatctt tatccttttc atcaaagcta tattgcttgt ctataaagtc
     4021 aaaataacca taactagccc aagctagttc tgcattgtct ctaagctttt taatctgttc
     4081 tttattgttc attttatttc ctttttaaaa taagcaaaat tttcataatt ttcacgccat
     4141 tcaagctcat aagaagcaac actctttgtt gtaagatact tccttctatt ataccattct
     4201 acatagaaaa aaactttttt taatggtaaa atttcattag tagttttatt tttttctatg
     4261 tccaatccta gactaaacga taaacgccct ttgtctctat cttcattaaa actatataat
     4321 tctatatttt ctctttggat atattgacta tttgaaacat tggccattcc tttatttccc
     4381 tgtaaaactt cttcaaaatt tgtgttaaaa taagctaata atttattata gtattccttg
     4441 tctatcttac caccattaga ctgatatatt ttgggttcta gcttacacat ctctttaaat
     4501 tcgtgataac tcggttgtag gctataaggc acaaaccacc cccaaccaaa tatcatactc
     4561 catataatta tcaaaggaag tagaataaaa cttgatattt ttagaatctt tttaagcctt
     4621 atcatttata cactctcttt agattctata ttattataag caagttgtct ataatatggt
     4681 gcaatatctg ctaagatagg aatggcatta atatcaagtg tcatcattgt tgtatgagta
     4741 gaaagactca ttgttatccc atagtattga ctttgttttt cttggattat cttgtgtaat
     4801 atctctcgta tcttactttc taagaaaata ttatctttgc ctaaatctct tgctctattt
     4861 gctatatttt ctatttcttc ttttataaat ctttcttgtt gttctttact gtgaaatata
     4921 aagagtttta ctatataatc ataaggaggt gctatctttc tagctccagg tgcattataa
     4981 gtatataaag ctttgatatt gtttctattc ctatcatcac agatacttaa agcaaagagt
     5041 tgtgctagac agcctccaag agagtgtcct gtaatagtaa gagaatcttt ttctttgatt
     5101 tgtggataat ctttaataca agtttcataa aagtttagca tatcatcata ttgggcttta
     5161 ggtatagagc ctatggctaa agaagcatca gctacaaaca aatctttgaa agaactcatt
     5221 tctgttcctc taatggctaa aatataattg atatagccat attcacttgt atagcttttt
     5281 tctttagttt tactatcaat ttgttttctt ttttctccaa ataaagtagc actaaagcca
     5341 gatcccgtat tagagcaatg ttttaacaaa tcatagcaag aaaagaattg tttagcttgg
     5401 agtggggaga agtcgccatc gagcttgccg attttaaatc ctctttcatc aataatttta
     5461 gagtttttat aggtaatatc taaaacattt tcaaaggtaa caattttatc ttcatctttt
     5521 atatcaaatt tattatcaac ataatgaaaa tatccataac ttgcctgtgc aagttctgcc
     5581 atgtccctta gtttattgat ttattgttta ttatccatat aattctccta ataagcttct
     5641 gcaatctatt tcaccgtcaa gctttaatct aaaatccata ttaccctcat taccataaat
     5701 atttggtgca tagtttttcc atattggtct aaaatatatt ttattaatat ttttaaaagt
     5761 taatgttttg ttatttggat tcttataata aatatatata cctaaatcta ttctattacc
     5821 ataacctatt tttgcataac cattttttcc tatactacca tctaaactct tatcaaaata
     5881 agctaagatt ctattatatt tttcctcact ttttggataa ttatttaatt tacataacct
     5941 tctaaattcc caatagctag gatataaaaa ggggtataaa ataatataat taaaattatt
     6001 ggtgataata gcactaaaat ctttttatat tttttcattc tatcaccttg actagatgaa
     6061 atcttagaag atgaagatag aaaacaagag ctttatgttg gtaaatttgt ggtggtaaat
     6121 ggggttagtg aaaacaaaat aaaagcaaaa aataaagatg taaatataaa taatggcaca
     6181 aaatacacaa acactacaaa aagcaataat ataagttcta gtgaaaacaa tacccaagaa
     6241 aaaatcactc atctaagcaa tgatggtcaa aatcttttaa aaaatataga gaagctaaga
     6301 ctcaaacctt ataatgatca aaatggaaaa gaaattactt catatgttaa aggtgcaact
     6361 atcggatatg gacatcttat agggcaaaat gaatgggatt tgtataaaaa tggtattact
     6421 ttacaagaag cggataaatt gtttaaaagc gatttgttac cctttgaaaa tgctgtaaaa
     6481 aattcaataa actcttcctt ggcacagaat gaatttgatg acttggttat attatgtttt
     6541 aatataggga ttgataattt taaaaactct tttgttgcca aaatcatcaa tgcagagaaa
     6601 acgggttaca aaacattaaa ggaagcttgg atggcgtgga acaaaagtca aaataaagta
     6661 atgcagggac taattaatag gagaaatgct gaataaagct ttacactcaa ggaggttatg
     6721 aaaaatggta atttttaaaa atatattatt gtttttattt tttagtactt atttgttagc
     6781 acaagaggat tttactccac tagagcaatg tacctatgaa aatgaaaagt tttggataaa
     6841 aattttaaat ctatgtccag agggtaatat aacttgtgat aaggttgtat atgtgggtgt
     6901 caataaaaat aatggaaaat atattgtctt aaacggtaag tctattagtg atgtaaatat
     6961 gaattttaaa ggatatgttt ttaaaaatgg tatttatgaa tacaatattt ttaataattt
     7021 tttatatatt tctaaaaaca agcagattat acaagaatat cgtctgaaat tatgtgaaaa
     7081 atagacgcaa caaaggcagc aagcaacaac aaatacctag aatatgtaaa aagttaaaaa
     7141 gatacaataa gaattacaag aagtttttaa agttataaaa atcctaatta atgaaatctt
     7201 agctcctaaa ttttacaaca aatacaaaga tttagaagtt gagattgatg ataagggtaa
     7261 tgtgcttagg tggataggag agattaatag agagacaaaa aatattagca aataaaaaat
     7321 gatataataa tgctttatat aaggaatctt ttatgtttat
//
LOCUS       DARGBD010000085         7295 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.085, whole genome shotgun sequence.
ACCESSION   DARGBD010000085 DARGBD010000000
VERSION     DARGBD010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7295
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.085"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..357)
                     /locus_tag="SFZ04_001442"
     CDS             complement(<1..357)
                     /locus_tag="SFZ04_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEG8065692.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQRETIK
                     LDLPKFEEFVKFLNSKI"
     gene            465..1169
                     /locus_tag="SFZ04_001443"
     CDS             465..1169
                     /locus_tag="SFZ04_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065693.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANAAKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFNIAS"
     gene            complement(1275..1970)
                     /locus_tag="SFZ04_001444"
     CDS             complement(1275..1970)
                     /locus_tag="SFZ04_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065694.1"
                     /translation="MVNFDTQYTNINYPNNNTSNKKAVLKNDDDAYYESIIKKFGDLE
                     KFKEENGYNGSPDVKEVENSLYKRYMEDRLSKDEIKILNKFGTDYLTEGVDLSALHKR
                     KVDLLKTLTSMNEFEKIWGAERAQREKQFFNELGKPLTQEDIDRFLTNKNNQKEDKEA
                     FKPIQAESKNKETYKDDNTRNELVKKLLEGKFSTSKELEILFGVKFSDDDAGEFNKIL
                     SLNSAPKSIDIKA"
     gene            complement(2177..3898)
                     /locus_tag="SFZ04_001445"
     CDS             complement(2177..3898)
                     /locus_tag="SFZ04_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEG8065695.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNFIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     ESNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGRGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            complement(3900..4628)
                     /locus_tag="SFZ04_001446"
     CDS             complement(3900..4628)
                     /locus_tag="SFZ04_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEG8065696.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKVRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFIEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMSLADMES"
     gene            complement(4764..5468)
                     /locus_tag="SFZ04_001447"
     CDS             complement(4764..5468)
                     /locus_tag="SFZ04_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HEG8065697.1"
                     /translation="MRIFLALFLFFNSLLALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMYESAKGMSKDLNQAYKFYDKACKLGLASACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGESCYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            complement(5468..7177)
                     /locus_tag="SFZ04_001448"
     CDS             complement(5468..7177)
                     /locus_tag="SFZ04_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG8065698.1"
                     /translation="MHASYALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGR
                     DCLPTGVVPVTFKPTFLRYAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSL
                     HIFAPIPLLEKITLVDTPGLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAI
                     KANLELLGENSICVLNQKDKLSTEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSY
                     EKSNFQSLLDFLTQLDTTVLKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYE
                     KHLLLAYEFFLKEIEILNHQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKD
                     LYTRYDYKAPYISSDDAFLAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILE
                     REILLFKAEFSNIQKDHIFQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFF
                     EKLNLKAFTNYENATKLSLAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNEL
                     NVYEFETLLINKPILTKIAKNFLEQSQNLIQEKNKFLDLKKAELQKRRVQILNVRESI
                     KED"
BASE COUNT         2469 a         1316 c          909 g         2601 t
ORIGIN      
        1 aattttacta tttaaaaatt ttacaaattc ttcaaattta ggcaaatcaa gctttattgt
       61 ttctctttgc tgttttcccc acatacactc tggaaaaaac gcatcttctt taaatcttgc
      121 cataacatga aaatgcaccc ttggcacata atttgcaaaa gaggcgatat tgattttttc
      181 aggtttgtaa aattctatca tagccttttc acaaagtaaa attttttcaa aaagttcctt
      241 ttgcaactct aaaggacaat cgctaaattc tttataaatt tctttagtaa aaattttaag
      301 ccaaggcact tgagcctcct ctttctctat ataaatcaaa tcattttcat aaatcattac
      361 attcctttga aattgtattt atgattattt tacaaaattt atcaaatttt taagtcaaaa
      421 tgcgttaaaa ttcctaaaaa tttaaaaaac aaaaaggagg ataaatgcaa attagttcaa
      481 gttataactc ttatgattac tactctagca aaccttcttt tgataaaaca aatcaatctg
      541 attccactca aaaagatgaa aaaaatctta gtgaaaataa agatgataaa gaaaaaaatg
      601 gcgaacaaac ccaaatggtt aatggcgtag agctaagcca aaaagaagta gctcaagttc
      661 gcgaactcca aagtatcgat agaaatgtaa aggctcatga agctgcgcat caagcagcgg
      721 gtggcggctt agcaggtgct gcaagtttta cttatacaag aggccctgat aatcaaatgt
      781 atgctacagc gggtgaagtt cctatcagca tgcaaaaagg aaacacacca gaagaaacta
      841 tagccaatgc aagacaaatc gcagcagcag ctatggctcc tgctgatcct agcccacaag
      901 actataaagt tgcagcaaat gctgcaaaaa tggaatttga agcaagagct gaagcaatga
      961 agcttaaagc cgaagaagcc aaagaaaaag aagaagaaaa taaagaaaaa gatgacaaaa
     1021 attcagaaaa tagcttagaa aaaacagata aagattcaaa aaacaacgat aaaaattcaa
     1081 attttgataa agactttaaa aattttgttg ctagaactta tcaacaaaac tcacaaaata
     1141 acgacattaa attcaatatc gcatcttaaa attcttaatt taaataaaaa atttccttat
     1201 aaaaacgatg acttgaattt gtatgttaag atatttaaca ttttttcttt tttataattt
     1261 aaatttttgc attttcaagc ttttatatct atactttttg gtgcagaatt taaagaaaga
     1321 attttattaa attctcctgc atcatcatca ctaaatttca caccaaaaag aatttctaat
     1381 tctttgctag tgctaaattt accttctaat agttttttta caagctcgtt tcttgtatta
     1441 tcatctttgt aagtttcttt gtttttactt tctgcttgta taggtttgaa agcttctttg
     1501 tcttcttttt gattgttttt attagttaag aacctatcta tatcttcttg agtaagtggc
     1561 ttaccaagtt cattaaagaa ttgtttttct ctttgtgccc tttcagcacc ccatattttc
     1621 tcaaattcat tcatacttgt aagagttttt aaaagatcaa cttttcgttt atgaagtgcg
     1681 gacaaatcta cgccttctgt aagatagtct gtgccaaatt tattaagtat ttttatttca
     1741 tccttgctta gtctatcttc catatatctt ttatataaag agttttctac ttcttttaca
     1801 tcaggagatc cattatagcc attttcttct ttaaattttt caagatctcc aaattttttt
     1861 attatggatt cataataagc atcatcatca tttttaagca cagctttttt attgcttgtg
     1921 ttattatttg gataattgat atttgtatat tgagtatcaa aatttaccat agaaaaccct
     1981 tttttttatg atattttatt aaaataatct tggattccaa ccaccaagag cagactacat
     2041 ttgccttttt gtataattgt agtttaaata agaatttaca ccattaatca tttttgcctt
     2101 ccttgatatt atactatatc ggaagaaaat taaaaattta taatcttgag agttttcaaa
     2161 aactctcaag ttattatcaa gctaagcttt ttccactttt atgatacttt aaaatacctt
     2221 cagcacagcg ataagccaaa gctcctacag tatcagttgg attatatcca ctattgtgtt
     2281 ggaaatttcc tgctcctaca acaaaaagat tatccgcatc ccagtgttgt aaataagtat
     2341 taaccacact agtttctcta tctgcaccca tggttgttcc acctgtgtta tgagtagatt
     2401 gataaggcac aacgctataa tccttaagat aagcaccttt tttgattgat tttactcctt
     2461 gcattctttt tgctacctca gctgttttat ctgtgataaa tttatgcaaa gctctatctt
     2521 gatcggtgaa attataagtt aagcgtaaaa gtggcatacc aaaagcatct ttataagttg
     2581 gatcaagact taaataatta ttcttatgag gcaaagaagc accttgtcct gctacggtaa
     2641 tagctcttgt gaaattatag tttaatgctt ttttaaattc agcaccccaa gttggagctc
     2701 ctgctggaag tggggctgat tgtatagggc gagttccaag ctgaacgcta taaatcatag
     2761 ctccatgaag gaatttttcc ttagaatgat caaaattatc tccgttaaaa tcatcactcg
     2821 tagttcccaa agcacctgaa cccatgaagg tgttaaattg ctcatcaaag aaagctgttg
     2881 tacccatgtt catttgataa caataatttc tacctaaagt tcctctacct gtttttggat
     2941 cgtattgctc acctatgttg cttaccatta aaagcttagc attgttaaac atataacttg
     3001 taagcacaac tatatcagca ggttgaatat actctttcat cgttctagta tcgacaaatt
     3061 ttacccccgt tacttttccg tcttttttaa gaatttgcgt tacattgcta taagtgcgta
     3121 tagtgtattt acctgtgctc atagcctttg gaattactgt gtttaaagga cttgcttttg
     3181 cgccatactc acaaccaaaa cgctcacaat acgcacagta ttgacaagga gctaaatctt
     3241 gaccatcagg gtttgtatag ccacctttag aatttgaagc tggcaaacga taagtgtgta
     3301 aatttgaact ttttgctgca ctttcaaatc gtttaagcat tttagtattt tcaagaggtt
     3361 cttgtggata aggactggat ctaaaagctc ccattttttc cgctaaagga tttgactcac
     3421 ctgatacccc acaggttttt tcaaatctat cataataagg ctccatatcc ttataagtca
     3481 caccccaatc ttgcaaggta taatcattac ctaatttatt accatatctt tgtttgctta
     3541 gggtttgaat ttcaaaatca taaggcataa acctaaaagt ccaaccattc caatgcaccc
     3601 ctgcaccgcc aacattatta cccaataaaa acgaacccat tttacgataa ggcaaggcta
     3661 aaccactagg atcatggcga aaagtcacag tgtctttcga gcaatcttgc atcaaaccat
     3721 aattaatccc gtatctccac tcatcatgga taaaattaaa attttcagta ctttgcatat
     3781 gtccgcgttc taaactaagt acattcaaac ctgctttagt aagctctgca gccactatac
     3841 ctccagtcca tcctgcccca actgttacca catctacttt ttttaatact tcagccattt
     3901 taactctcca tatctgctaa actcataggt tcaatgttaa aaaattcatc acttgcaatt
     3961 ttatccacat agctcatttg tgcacctgga tattgcatca ttctccaacc atttttatta
     4021 tcatttccgc cataaattgg atcagctaaa actccagcta ctgtcatatc tcttaaaaga
     4081 gtgaaaaaat aagaagattt aaaacccgta gtttgaattt ttcctttttc aaaatcgctt
     4141 agaattttat cctgatctcc acctttaagc agagaaaaag attttttata acgcttttga
     4201 gcattttctt caagagcatg cacaccttct aaaaaaatat ctttgcgttg cataggagtt
     4261 tgatagcctt gttcagcttt accctcaatg aaaggtcctt gcatatattc tctatcatta
     4321 taaccataag cactagctag ctgattatcg ataaaataag gtacgcctaa acctatagct
     4381 ccttctcctt gctcatcttt aggataaatt ctttcacagg ctgcacttaa ggtatcaaat
     4441 tcagtttgag tttgaaaaaa cattctacct ctaactttat ttgattttcc ttgtgaagct
     4501 tgatgcgaat gcgtaagttc tgctgccttt aaaacagcac cgccacctat agtactagct
     4561 gctactacag aaccacctaa aagccctagt ttaaaaaagc ttctgcgatc aataatattg
     4621 tcttgcatta cttctcctta ataataattt aaacaagact atattagccc tattaatata
     4681 aatttaactt taaaaagcga taaattttgt gttattctta attttattta agaatatctt
     4741 tgaaagtaat gaaaatagaa cttttaataa agctctatat ctttagaatt aagttcttta
     4801 taagctgcac aagcttcttg atgtttttga tcacaagcca taccaaaata tctttttgcc
     4861 tttgttaaat cttgtttttc tagttgatta tagcgtccta acaaataaca agactcacca
     4921 aaacctaaag tgcaagattt agaataaaaa gcaagggcag attttacact tgctttaaca
     4981 agctctcctt tatcatataa agaccctaat tgataacaag ctcttgcatt ttttaaatca
     5041 caagatcttt tataaaaact tgaggccatt tgtccatctt tttctttttc ataaaataaa
     5101 gctatattat tacaacttaa cgattctcct aaagtacaag ctttattaaa agccaaaaga
     5161 gcttcatttt tataaccttg attttgcaaa agcaaagcca tattagaaca cgcacttgct
     5221 aaacccaatt tacaagcttt atcataaaat ttataagctt gatttaaatc cttactcata
     5281 cccttagcac tttcgtacat aaaagctaaa gaaaaacaag ctttagaaat atctttttca
     5341 caaaggcttt taaaaatttc ataagcttta tcaaatttat ttgcttcata aagttttaaa
     5401 ccttcttcta attcacttaa tgcaagtaat gaattaaaaa ataaaaataa agctaaaaat
     5461 attctcatta atcttccttt atactttctc taacatttaa aatctgtact cttctttttt
     5521 gaagttctgc ttttttaaga tctaaaaatt tatttttttc ttggattaaa ttttgacttt
     5581 gttctaaaaa attttttgca atttttgtca aaataggctt attaataagc aaagtttcaa
     5641 actcataaac atttaattca tttaaaactc tttcataaat ttcgcttttt ttaggataaa
     5701 aaagtacgaa ttcagaacta tcaagctcat aaagaacacg actttcattg attttacgac
     5761 taaaaaatgc aaggcttagt ttcgtagcat tttcataatt tgtaaaagcc ttaagattta
     5821 atttttcaaa aaataaatca agctctaaaa tacttttaaa taaaagctcc ttaaaatctt
     5881 tcaaaaagta ctcatcactt gcattgcaaa aagctcttaa ttcactaaaa tttttatcac
     5941 tttggaaaat gtgatctttt tgtatgtttg aaaattctgc tttaaaaagc aaaatttctc
     6001 tttcaagtat gtttataaaa tcttttaatt tcatcttgat ttcttcaaaa gatttataaa
     6061 gttcattttt gattttttta aactctttac tcatcacatc actattataa aacatcgcca
     6121 aaaaagcatc gtcgcttgaa atataaggcg ctttataatc atatcttgtg tataaatctt
     6181 tctttaaaaa tcctttgctt tctttgtaaa aataagcatc tttttcctta acacttgcaa
     6241 aaatttcact agaaattctt tcgctaatgc ttttaagctg ttctaaaatc tgatgattta
     6301 aaatttcaat ctcttttaaa aaaaattcat acgctaaaag taaatgcttt tcataacttt
     6361 gaaattgatt taataaacga tcaaaaatac ctacaaaaag ttggttttca tcttctaaaa
     6421 tttcgcataa atttaaaatt tttcttttaa caaatttttc ttttaaaact gttgtatcta
     6481 gctgagttaa aaaatcaagc aaagattgaa aattagattt ttcatagctt tgctcatctt
     6541 tagcctcttt gcaagaaatg gcaataagct cattaaaata ttttaaaaac acactttttg
     6601 cataatttaa aacattatct agctcttctg tgcttaattt atctttttga tttaatacac
     6661 aaatgctatt ttctcctaaa agttctaaat ttgcttttat ggcatcttct tcactttttt
     6721 tacctgcatt atcaatcaaa cttaaccaaa tcgctccatg aatattttta agctcatcaa
     6781 gagttgttaa agtatcattt tcatttgcat ttaaacctgg agtatctaca agagtgattt
     6841 tttcaagtaa aggaatgggt gcaaaaatat gcaaactttt tgcttgtttt acttcatttc
     6901 tttgatccgt ataaaaggct aatttttcta tatttgtgat aatatcactt ccatcttcaa
     6961 attctactct taaaaaatat tcttttgcat agcgtaaaaa agtaggttta aaagtaacag
     7021 gaacaacacc cgtaggcaaa caatcacgcc ctaagatcaa atttagcaaa cttgatttac
     7081 cacttgaaaa ctgccctata atagcgatat taacattctt atccaaagaa aacacaagct
     7141 cttttaattc attttctaaa gcataacttg cgtgcataaa aggctcgtta agttccttgc
     7201 aaagctcttg aatacgccct ttaaaactat catcaaaact cacactataa gtattttcat
     7261 aggcttttat aaaatcattt aaaagattaa tctgc
//
LOCUS       DARGBD010000086         7177 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.086, whole genome shotgun sequence.
ACCESSION   DARGBD010000086 DARGBD010000000
VERSION     DARGBD010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7177
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.086"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1128
                     /locus_tag="SFZ04_001449"
     CDS             <1..1128
                     /locus_tag="SFZ04_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HEG8065699.1"
                     /translation="GTKVFDWIVPDEWNAKEAYIITPEGEKICDFKKHNLHLLNYSEA
                     IDKEIELEELQNHLYSIEEMPDAIPYVTSYYKRRWGFCLTHNERKKLKKGKYKVYINA
                     KHDENGVLDYADFILPSTQNSKDEILISTYLCHPSMANNELSGPVVAIFLAKWLLSLK
                     ERKYNYRFVIIPETIGSIVYLSKHLEHLKKHVKAGFVLSCLGDDHAYSLIHTPKKNTL
                     SDKVALHTLKNKKNFKAFSFLDRGSDERQYNAPLVNLGIVGVCRTRYLEYEQYHTSKD
                     DLNFISEKGLMGGLQSIQEMILNLEINAVYENTIVCEPNLGKRGLYHTLSTANDIPLA
                     CNFLAYCDGENDIIDIANILNMQAYEFKELLEKIKFYGLVK"
     gene            1125..1915
                     /locus_tag="SFZ04_001450"
                     /pseudo
     CDS             1125..1915
                     /locus_tag="SFZ04_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989744.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
     gene            1936..2727
                     /gene="legH"
                     /locus_tag="SFZ04_001451"
     CDS             1936..2727
                     /gene="legH"
                     /locus_tag="SFZ04_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HEG8065700.1"
                     /translation="MKYLLEFENKKYSTYDFIETFYKLGLQKGDTLCVHTELFNFGFP
                     LLSRNEFLQTILDCFFEVIGKEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENNISYNKTISYYVRKLDISSEPNLINIINIVNN
                     TKNFKKNNFAGDHINIYNAKEYIEILWKKLDINQTILIENYDTIY"
     gene            2758..2988
                     /locus_tag="SFZ04_001452"
     CDS             2758..2988
                     /locus_tag="SFZ04_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8065701.1"
                     /translation="MEKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFNKEDLSLLKSQNALLEKIQTLKAEK"
     gene            2985..3878
                     /locus_tag="SFZ04_001453"
     CDS             2985..3878
                     /locus_tag="SFZ04_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8065702.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFSQEDEEEFDKLISYYI
                     QDGISIEEQCDCYLLILNDTLEETKFFIENGTYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWIAHIKVRKYFSQYLQNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGELITKCDFLCQDFFTYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            3871..4287
                     /locus_tag="SFZ04_001454"
     CDS             3871..4287
                     /locus_tag="SFZ04_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEG8065703.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            4284..5846
                     /locus_tag="SFZ04_001455"
     CDS             4284..5846
                     /locus_tag="SFZ04_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG8065704.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDHTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFETRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKFTGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            5836..6897
                     /locus_tag="SFZ04_001456"
     CDS             5836..6897
                     /locus_tag="SFZ04_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEG8065705.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            6897..7118
                     /locus_tag="SFZ04_001457"
     CDS             6897..7118
                     /locus_tag="SFZ04_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8065706.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
BASE COUNT         2685 a         1029 c         1176 g         2287 t
ORIGIN      
        1 ggcacaaagg tttttgactg gatagtccct gatgaatgga acgccaaaga agcctatatc
       61 atcactccag aaggagaaaa aatttgtgat tttaaaaagc ataatttaca ccttctaaat
      121 tatagcgaag ctatcgataa agaaatcgaa cttgaagaac ttcaaaatca tctttactcc
      181 atagaagaaa tgcccgatgc tattccttat gtaacgagtt attacaaaag acgttgggga
      241 ttttgtctca cgcataatga aagaaaaaaa ctcaaaaaag gcaaatacaa agtctatatc
      301 aatgcgaaac atgatgaaaa tggagttttg gattatgctg attttatcct acctagtacg
      361 caaaattcaa aagatgaaat tttaatttca acctatcttt gtcatccttc catggcaaat
      421 aatgagctta gtggtcctgt ggtggctatt ttcctagcaa aatggctttt gagtttaaaa
      481 gaaagaaagt ataattaccg ctttgtcatc attcctgaaa ccataggctc tatagtctat
      541 cttagcaaac atttagagca tttaaaaaaa catgttaaag caggctttgt gctttcttgc
      601 ttaggcgatg atcatgctta ctcactcata cacacaccca aaaaaaacac tctaagcgat
      661 aaagttgcct tgcatacgct taaaaataaa aaaaatttca aagcttttag ttttttagat
      721 cgtggaagcg atgaaagaca atacaatgct ccgcttgtaa atcttggcat agtaggggta
      781 tgtcgcacaa gatacctaga atacgaacaa taccacacca gcaaagatga tctcaatttt
      841 atctctgaaa aaggtttaat gggtggactt caaagcatac aagaaatgat tttaaatcta
      901 gaaatcaacg ctgtatatga aaacaccata gtatgcgagc ccaatcttgg taaaagagga
      961 ctatatcaca cccttagcac tgctaatgac attcctttgg cttgtaattt tttggcttac
     1021 tgtgatgggg aaaatgatat catcgatata gccaatatct taaatatgca agcttatgaa
     1081 tttaaagaac ttttggaaaa aataaaattt tatggactgg taaaatgaaa tattttttag
     1141 aacacaatgg caaaaaatac tccgataagg atttaataga tgctttttat caactaggta
     1201 taaaaagagg cgatatttta tgtgtacata cagaactttt taaatttggc atacctttgc
     1261 tttctagaaa tgaattttta cagactatac tcaattgttt ttttgaagtt ataggtcagg
     1321 aaggcacttt gatcatgcca acctttactt atagtttttg caaaaatgaa acttatgata
     1381 aagtgcattc taaaggcaaa gtgggagtgc tgaatgaatt ttttagaact agcggggggg
     1441 ggttaggcga actagcgacc ctattttttc ctttgctgtg aagggtgcta aagcggatat
     1501 ttttttaaaa gaaaactcaa gctgttttgg aaaggatagt gtgtatgaaa ttttaactag
     1561 ggaaggtggg aaatttatgc ttttaggctt gaattatgga cacgccctaa cgcattatgc
     1621 tgaagagaga aataccagct tttgcaggta ttttaaggaa tttaagggct tggtgattga
     1681 cgagctagga caaaaaagag aaaaaaggat aaattattat gtaagagact tggaaaaagc
     1741 ctatgtatgc agccttgata agataaatga aatcgtgcgg caaacaaggt attacaaaag
     1801 cataaaattt gcaggagatt ttctagaaag ctatgatgct aaagaatatg tcaaagccat
     1861 aggcaacgcc cttaagcagg ataaatttgc catatatgaa aagcttcttt tatgaaaaat
     1921 atttaaaggt agtttatgaa atatttactt gaatttgaaa ataaaaaata ctccacttac
     1981 gacttcatag aaacttttta caaactagga ctacaaaaag gcgatacctt gtgtgtgcat
     2041 actgaacttt ttaatttcgg ttttcccttg ctttctagaa atgaattttt acagactata
     2101 ttagattgtt tttttgaagt tataggcaaa gaaggcactt tgatcatgcc aacctttact
     2161 tatagttttt gcaaaaatga agtttatgac aaaataaatt ccaaaacaaa aatgggagca
     2221 ttaaatgaat attttcgcaa acaaacagga gtaaaacgca caaacgatcc tatattttct
     2281 tttgctataa aaggagcaaa agaagaatta tttttaaaag atacaacaag ttgttttggg
     2341 gaaaattgtg tttatgaggt tttaaccaaa gagaatggaa aatatatgac atttggaggc
     2401 caaggacaca cactaacaca ttatgcagaa gaacaattta atgtatttta cagatatcat
     2461 aaaattttct ctggaatttt aattgatgaa aacaatatat catacaataa aaccattagt
     2521 tattatgtta gaaaacttga catatcttct gagcccaatt taattaacat tatcaatatt
     2581 gttaataata ctaaaaattt taaaaaaaac aattttgcag gagatcatat aaatatttac
     2641 aacgctaaag aatatataga aattttatgg aaaaaattag atataaacca aacaattcta
     2701 atagaaaatt atgatacaat atattaattt tcaacattct caagaaagtg gtatacaatg
     2761 gaaaaacaat tttatgaaat tttagaaaat atacttgaaa ccaaagtaga tgaaaataca
     2821 aatttaagca tggaaaactg caagaactgg acttctttag ctcatattga tatcatcatg
     2881 agtttagaag aagaatttga aatcaaattc aacaaagaag atttaagtct cttaaaatct
     2941 caaaacgctt tactagaaaa aattcaaacc ctaaaggcag aaaaatgaaa gaaaatattg
     3001 aaaaattatt tcaagccatc gctcaaaaaa atcctatcca ttctaaatat cttaaaaaaa
     3061 ttgaattttc acaagaagac gaagaggaat ttgataaatt aatttcttat tatattcaag
     3121 atggtatcag catagaagaa caatgcgatt gttatttatt gatccttaac gatactttag
     3181 aagaaacaaa atttttcata gaaaatggga cttatcgtta ttctagcttt gatgaagtta
     3241 aggataaagt ttattttaat gaaagctata tgaaacaata catgataggc ctagctcttt
     3301 cttcttttgt ttggatagct catattaaag tgagaaagta tttttcacaa tatttgcaaa
     3361 atttcactcc aaaaacaact tattttgaaa taggccctgg ccatggagaa tacttcgcaa
     3421 gagcagttaa aagtggtaaa ttttcagcct tttatggact tgatatctct ccaacgagtt
     3481 gcgaacttac tcaaaaaatg gtaaaacaac aagtaggaga attgattaca aaatgcgatt
     3541 ttttatgtca agattttttt acttatgatt ttgataaaaa agctgatttg atagtgattg
     3601 gagaagtgct agaacacgta gaaaaacctc ttgaatttct taaaagatct aaagaacttc
     3661 ttagcgatgg aggagaaatt tttgcaacta tccctatcaa tgctcctgct attgatcata
     3721 tttatttatt ttcccatcct gatgaagtta aagatttgat agaaaaatca ggcttaaaat
     3781 ttaaagctta tgaatgtttt atggcaaatg attatagttt ggaaaaagca ttgaaattta
     3841 aaaatgctat cactatggca gtagttttaa atgcttaata caacactcaa tttacccctt
     3901 catcatatag gcgtggcttg taaaaattta gaaaaagaaa gggaatgttt ttttaaacta
     3961 ggtttttata aagaatcaga atttatagat gaaaaacaag gggtaagagg cgaatttatc
     4021 attccttgta atgaagcatt tccacagtat agatttgaac ttttgcaaaa tttaaacgat
     4081 aaaggaccac tagatagcta tttgaaaaat aataccaaaa tgtatcattt agcctatgaa
     4141 agtaaaaata tcgcccaaga tttaattctt ttggaacaac aaggaggcat ttgtattgtt
     4201 cctattatgc aagcaagcta ttttgctaaa ctttgtttta tcatgatgcc aaataggctt
     4261 ttaatcgaac ttgtggagct aaaatgaatc ttttttcacc ccatttaaaa cgcaatgagc
     4321 ttataaaatt cgccaaagaa ttagacttta gcaaaagtca agatcttctt attaatgtcc
     4381 atagaaatca tgcttttgaa ggagtgcaaa gtatcattgc tcctttttta cattttgcta
     4441 atttaagagc tgagtttaat ttcagctctt atgatgatag cttgagtttt gataacttta
     4501 aagaagctag tttagaactt ttatggctag atttaacccg ctataaaaat aatgtgcaaa
     4561 attttataga agaaagactt ttagaactaa gaaaaatttc acaaaaccct attttagttc
     4621 ttagtttagg agaatttaaa acagataaaa aaattttaaa ttgtgaaatt tttaacatag
     4681 aaaaactcat aaaagagtat tttgatgaag aagatatttt agacctagct aaagaagaac
     4741 ttacaggctc taagcttaat aataaagcct tgattttttt agcacaaatt ttaggactta
     4801 gcctcatccc tgcactcgta aaacccgctc ttaaagctct tgtacttgat cttgatcata
     4861 ccttgtatca aggaatttta ggtgaagagg gtatagataa tcttaattta agtcctttgc
     4921 acaaaacctt acaagaaaaa attaaaactt ttaaaaaaca aggcttttta cttgccctag
     4981 cttcaaaaaa tgaagaaaaa gacgcaaaaa aactttttga aacaaggaaa gattttatct
     5041 tacaatggga tgattttgat gctagaatga tcaattggga accaaagggt gaaaatatct
     5101 taaaaattgc taaaaaattt aatataaata ctaacgctat gctttttata gatgataata
     5161 tcgccgagct tgaaaatacc aaatttacag gcgttaaaac acttttatgc gatgaaaata
     5221 tactttataa aatcaaactt tttcctaatc ttttaaaact ttcaaatacc aaagaagatc
     5281 aaattcgtgc caaagatata gcagccaatg ctttaagaga agagcttaaa agcttaagcg
     5341 atgaagaata ttttcaaaat cttgaaatca gcttaaattt tagcaaaaat gatctgcaaa
     5401 atatccctcg cattagcgaa cttttaggca aaaccaatca atttatcgct aattacacac
     5461 gcttaaatca agaaaaagtc gcacaacaca tgcaaaaaga actcattgta agtgtgagta
     5521 tgagtgataa attaagcgat agtgggatta tcgctatttt tgttttttct tgtaaagaag
     5581 gaaatttatt tatcgatgat ctttgcattt cttgtagggc tttaggtaga aaacttgaaa
     5641 ctagaatgtt ttttaaagcc tttgaactag ctttacattt ctttgatctt aaaaacaata
     5701 atgcaaggct ttactatcaa aaaggcgaaa gaaatatgcc atttttgagc tttttagaac
     5761 aaatttccaa agaatttgaa aaaaactcag cccttattcc atttcaaaat ttaaacttca
     5821 aaggacttat aatccatgaa aactagattt gataaagcta aaatttcagg catttgcgta
     5881 agcgtacctg aacataaaat ttgcattgat gatgagttag aaagcgtttt ttcaaacgat
     5941 atcaaaaccc ttaaaagaat gaaaaaagtc ataggtttaa acacgcgtta tatttgcgat
     6001 gaaaacactt gcgtaagcga tcttggaaaa cacgcagcca atacactttt acaaggttta
     6061 aatatagata aaaatagcct tgatgcactc atcgtagtaa ctcaaagtcc tgattttttc
     6121 atgccttcta cggcttgtta tttacaccaa cttttaaatt taagctccaa aactgtagct
     6181 tttgatttag ggcaagcttg tgcagggtat ttatacggct tatttgtcgc tcattcttta
     6241 atacaaagtg gcttaggtaa aattttactc atttgtggag atactttaag caaattcatc
     6301 caccctaaaa atatgaattt agctcctatt tttggtgatg gagtaagtgc aactttaatt
     6361 gaaaaaacgg attttaacga agcttttttt gagcttggaa gcgatggaaa atattttgat
     6421 aaactcatca ttccaaaagg tgcgatgaga atacctaaag cagatatttt caacgatgat
     6481 tcactcatgc aaactgagga gtttagacaa ttagaaaatc tttatatgga cggagcaaat
     6541 attttcaata tggctttgga atgcgaacct aaaagcttta aagaaatttt agaattttct
     6601 aaagtagatg aaaaagacat tgcttttcat ctttttcatc aatccaatgc gtatttggtt
     6661 gattgcatca aagaagaatt aaaacttaat gatgataaag ttcctaattt catcatggaa
     6721 aaatacgcta atttaagcgc ttgttcacta cctgccctac tttgtgaact agatactcca
     6781 aaagaattta aagcgagttt aagtgctttt ggtgcagggc ttagctgggg aagtgcggtg
     6841 ttgaatttca aagatttata cacaaaagat attttaattt acacaaagga gaaataatga
     6901 caaaaactga atttttagaa gagcttaaag aagctatgca tagagatgaa gacttaaacg
     6961 aggatatgct acttgatgat atagatgagt gggatagttt ggcttttgta tctgtgatgg
     7021 tgctttataa aaatcttttt actttaaaaa tcacagccga ggacttgaaa aattgtcaaa
     7081 aagtaagtga tttaatcaat ttagcaaagc ttgattaaaa cctttaaggt tttaatcttt
     7141 tatcactaat tcaaatttgt cacccacatc tttaaat
//
LOCUS       DARGBD010000087         7048 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.087, whole genome shotgun sequence.
ACCESSION   DARGBD010000087 DARGBD010000000
VERSION     DARGBD010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7048
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.087"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(40..552)
                     /locus_tag="SFZ04_001458"
     CDS             complement(40..552)
                     /locus_tag="SFZ04_001458"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HEG8065707.1"
                     /translation="MKNNPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDKQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELMQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVIDNSCRNNLEEK
                     VELIIKKLAL"
     gene            complement(542..1303)
                     /locus_tag="SFZ04_001459"
     CDS             complement(542..1303)
                     /locus_tag="SFZ04_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HEG8065708.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVYTFFCAKDFMLKCIEEKQ
                     DLIISYADIIYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGY
                     IIELGKKANAHDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIEK"
     gene            complement(1305..1907)
                     /locus_tag="SFZ04_001460"
     CDS             complement(1305..1907)
                     /locus_tag="SFZ04_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEG8065709.1"
                     /translation="MFIGITQRLICNDSYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPLLGICR
                     GAQMIAHYFNSHMSPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAEDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILREWFSLIKE"
     gene            complement(1898..4237)
                     /locus_tag="SFZ04_001461"
     CDS             complement(1898..4237)
                     /locus_tag="SFZ04_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065710.1"
                     /translation="MAELNFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLAALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSTSAKTYYH
                     YRDYLEFKDIRLQKIIELIKELEVLYDCCFLDVEFAFAIQDDKEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEELLNHGFNENEIKRLEFSL
                     LELTNKIINPRSGFYLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDENFDLYFDINQKDHKIYLQDKALILSEEKTKALNALLKE
                     HGLEISACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYGIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFLEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            complement(4252..5013)
                     /locus_tag="SFZ04_001462"
     CDS             complement(4252..5013)
                     /locus_tag="SFZ04_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG8065711.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKDQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGNELFNKISDKISQRLPKEFSIKYTTRCWSAKKI"
     gene            complement(5065..5837)
                     /locus_tag="SFZ04_001463"
                     /pseudo
     CDS             complement(5065..5837)
                     /locus_tag="SFZ04_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            complement(5904..>7048)
                     /locus_tag="SFZ04_001464"
     CDS             complement(5904..>7048)
                     /locus_tag="SFZ04_001464"
                     /inference="COORDINATES: protein motif:HMM:NF022634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8065712.1"
                     /translation="MVLKGCSGHTAFSYFLLWSGYSPSIFRTCNLALKDPNVYYINKY
                     QDLIFFWNYKNILVFEHGMEPKHQDGLKLFYLVLLNKDIYILTRDPLSRLKTWANHII
                     DDYVSLDTEFSLDYDFSQGFKWIKYAFGGDKVDLNQFVYSGPITNESMSVDSFISKIN
                     YNKIFYIDFHEIYPEGMLDVFKYFKDNYNFPIIQNMDFFQYSLGGSEGYLFAIPRILN
                     IYENCDNYKIFFFSSLRLYFVKNKNIDIRYTLFPIHNDMQKKLIDISKYFINKKYYKD
                     FFIAMSQVEFEKLYQNSYLFDKVKIYIQHLCKNIDKQINLENEKKIKEKDILLFFKEH
                     SFYRKQLKSILDYELQHIKQHRPDIVASWKYYQEFEKMCKELDGNI"
BASE COUNT         2381 a         1227 c          764 g         2676 t
ORIGIN      
        1 tagcattagc aataagtttt tttgatattg agtaatgctt cacaatgcca atttctttat
       61 tataagttca actttttctt ctaaattatt tcgacaagaa ttatcaatca ctaaatcagc
      121 ctctggttta tcaaattcta tatcaacacc aactacatta tcaatttctt tatttaaagc
      181 cttagtataa agcccttttt gatctctttg cattaattca tgcatatcgc attctatata
      241 aatttcataa taatttttta attgctttct attgtaatca taaatctcat taaacattga
      301 aatcgtagtg acaataacta tcataccttg atcgtttaaa aattttgcaa atttagctct
      361 tttcaaagcc atatctatgc gaccttgttt atcgtatgca taatgtccta atatttctct
      421 taactcatct ccatcgagat aaataagatt tttatatttt agttttaatt tttcatacaa
      481 agcttgacct atagttgttt ttccgcttcc agctaaacca gtaagccaaa taatataagg
      541 attatttttc aatttgcacc tctaaatcac tcataaaatc aatttcacac caattgccat
      601 caatttccac tgcttttgcg ttgttatatt tttcaattaa agcctgcaaa aaacttgtca
      661 tatacatatt ttcaaaattt ttattatcat ataaaatatc tcggtcaagc atttcataaa
      721 aagcaataac ttcggaaaga aattgataag aaaatttaaa aagtcctata tattgagctt
      781 ctatctcatc atgggcatta gctttttttc caagttctat aatataacca tttgtcatct
      841 ttaatgtttc agcatcttct aaaggatttg caaagcgttt gctccaaagc ttacgccaag
      901 acttatcaac tactatagca agttcttctt tggcatttat aagcttttgc acgcaatctt
      961 gaaaataaat aatatccgca taagaaataa tcaaatcttg tttttcttcg atgcatttta
     1021 acataaaatc tttagcgcaa aaaaaagtat aaaccatatt ggttttatca tattttgaat
     1081 taataaaaaa atgctcaata tcatatttat taagataatt ttttagcaca tcgtttaaat
     1141 atccacccac aacagctatt tcatttatac ctgctgattt taaagcttcg atttcataat
     1201 ctattatttt tttattctta tactcaacca tacactttgg ttgatctttt gttaaaggca
     1261 tcagccttga tccaaaacct gctgctaaga taattgcatt catattattc cttgattaaa
     1321 ctaaaccact ctcttaaaat ttgaatatta ttaagcccat tttctctttc aatatgccac
     1381 attataccaa aaatattttc atacttatgc ttaaaagctt ctatggtatt atcttctgct
     1441 aagcaaagtt ctacaagatc ttcgcctaat ttttcaatag caaaattatg aaaagaattg
     1501 cttataaatt tttcttttga gaaaaatact tcatgtttgc ctatatgatt ttcacaagga
     1561 ctcatatggc tgttaaaata atgagctatc atctgagccc ctctgcaaat tcctaaaagt
     1621 ggtatttttt cttctaaaca aatttctata acttgctttt catataaatc tctctttttg
     1681 gataaaacat taggactata aaaacttaaa tcattgccac cacttaatat cacagctttt
     1741 attagatgtt tataataaga aaaatctatt tcatagctaa gaggaagagg agtaaaattt
     1801 ttaaataaat ctttattaaa taattttccc caatccaaag ccaaacattc tctttcttca
     1861 tgataactat cgttgcaaat aagcctttga gtaataccta taaacaaaat atttgctcac
     1921 tttcacattc tatatttatt tttttagctt ttaaatattt ttcaaaattt tcttctccaa
     1981 ctcctataac agcaggcatt ccaagttctg aggcacgaat ggccatatgc gaattagcac
     2041 ccccataaca tgtaataagt cctgctatat tttttgtaaa taaataatca tatccgggat
     2101 ctgccgcata aattaaaaca atctttcctt ctaaatcttt atcattttct ttagccgtaa
     2161 atgcagttat gcttttttgt gtaataaaat ttggaataat actatgatta taaaaagaaa
     2221 aaatttcatc agcattacaa agtaaagaag gaagctttat agcttgtgta agttcatatt
     2281 cttttttatt gcgattaatt tcttctaaaa actgttcttt tggatttata gaataaagac
     2341 tagaataaag atttaaaatg ctttttatat caagatgagc caaatcttct ttttcaatac
     2401 cataatactt gcctaattct tctatataaa ctatggcttt agaaagcaat ctagtaaatt
     2461 caaattttac caattctcta ccttcaatag cttgttttaa aaaatcaaaa aattcacaag
     2521 cactaatttc tagtccatgt tctttaagta aagcatttaa agcctttgtt ttttcttctg
     2581 ataaaataag ggctttatcc tgtaaataaa ttttatgatc tttctgattg atatcaaaat
     2641 aaagatcaaa attttcatca tatcttggag ataaaatatt ataagttcct gctcttaagt
     2701 gtccaaaatc tttcaaaaat tgatctttgt tgtgaaaatt aagatggttt gtttgtttgc
     2761 ttaaattttt actcactgta ttgagtgaat ttaaaaaatc atctttttcc tctttggtta
     2821 taaaatcaat ctcaactaaa gaatttaaaa gttgcattgc tacaaatgca gccctagcca
     2881 cccccgcaaa aggcaaggtt ccataacgct tgcattcttc aataagccaa taaattttat
     2941 caattaaaga aaaattagaa ttaataatgc catcatatct ttcttttagc ttataagctt
     3001 tttgtatgtc ttttaaataa aaccctgatc taggattaat aatcttattt gtaagttcta
     3061 ataatgaaaa ttctaatctt ttgatttcat tttcattaaa accatgattt aaaagttctt
     3121 ctaatttttt agaactatta aagtcataac aagaataaac aatattaaat tcaatcttat
     3181 cgtgcaattc atgattttta ttaagcttat ctaagtaaaa attgacaagt ttttgtgcaa
     3241 tattttcatc taattttttt ggtataaaag aattaaaaga taatcttaca tctacataag
     3301 gaatgcctaa aaaagaatgg attaaaggat gggatcttag atctctataa ccataattat
     3361 ctctttgata cgcccagata ttatccgtaa tgatttcttt atataaacta aaagctaaac
     3421 gcttaggtct taaccctatg atttcagctg gattccaatc aggcattacc ccaaaaatgg
     3481 ctttatctcc taaaacccta gatcttgatt cttttaaaga ctcaaaacgt ttataaaatc
     3541 tatataaagc ttcttttggt aaagaatgaa ataaattatt tttttcatgc ataaccaaag
     3601 gacgcacttg taagcaaaaa agttcttcct tatcatcttg aatagcaaat gcaaattcaa
     3661 catctaaaaa acaacagtca tataaaactt ctaattcttt tataagttct ataatttttt
     3721 gaagtctaat atctttaaat tctaaataat ctctgtaatg atagtaagtt tttgcactcg
     3781 tactgcttcc atctgtaata gagctatttg aaccattttc atcatattga agacaaaaat
     3841 aaggggaaaa attatcttta tcaacgctaa aaccaactcc acaaagagta atgttttcaa
     3901 gcataggttg aactaaaatt tcatcacttt ttgatggcat agaattggca acttcatata
     3961 aggctgctag taattcatct ttagaatcag ctttaatatt tgccaaagaa agaaaagcac
     4021 ctgcattgga gtttttcatg ctatcttcac ttaaagaaga acttcttata atgagtctat
     4081 tagcctttaa ggtttgaatg tcctgtaaaa ctttatcttc atttgatatt aattcttcaa
     4141 gcgaagttaa aaccaaaggt agaacttttg ctttttttaa ttttgtttgt aaatttttta
     4201 aattttgtgc tttggtttta aaatttaact ccgccatgtt tttccttagt tttatatttt
     4261 tttagcactc caacaacgag tggtatattt tatgctaaat tccttaggaa gtctttgtga
     4321 aattttatca ctaattttat taaaaagttc atttccttca tcagtctcca aatcccaata
     4381 aggattttta acacttttcc atgcattaat ataattttca atgctttgat gaaaataaaa
     4441 atcctcttca atataaacaa tattatcaaa aagatccttt cgactctcta taattggtct
     4501 ttgatcttct cttcttgttc cccttgtata atttggtaca aattctacaa tagtatcttc
     4561 agctattttt tgcacaggat cgtttaaatc cctgtgattc cacatacaag aaaaatatcc
     4621 ctctgatttt aataagcgat gtgcttcctc taaggcttca tttctatcca ttacattaaa
     4681 actactacca aaagtcaccc aatcaaattc actattttgg agtgttgagt ttaagcctgt
     4741 tgctctaacc cagtcaatct tttgatcctt ggttctttct atcccgatct cacgcatcgc
     4801 atcatttggt tctacagata ccaccttaca tcctctttct aaaagcataa tgcttaaatt
     4861 tccagttcct gcaccgatat cagcaacttt aatatctttt tttccaacta aactaataag
     4921 catatctata gtttttggag cataatttgg tctatagcta taaaatttag catgcttggt
     4981 ataatcccac acttgttcta ctagtttttg cattttattt ccttttttca tctttgacaa
     5041 gcttgatgaa aaaaaggagg tattttatgc ttttctagct gtccatgctc ttattttata
     5101 aggaatctct atactttgca tatgagaaat tttagcttct atcatctcta aaatttcctt
     5161 ccatcttttt tcacctgctt gtgcttgtat atcatttaca gaatgccaag ctccaagata
     5221 acgctcttta tcccaaaact ctttatagtc acactccata aaaaagcagt ctgtgaaatc
     5281 tcctgttgaa acaagaattt cttcccattt tttaacattt tgagtgccac tgcttacacg
     5341 agtaagatct ggaacaatat gtttaatctc cttttcaatt tcatcaaaaa ccgaaccctc
     5401 tacaatgtgg cgaggattcc aaatcgcagt aaaatacccc cccctgtcaa tatacgatta
     5461 aattctggga gagatttttt aggatctgtc caatggaaag aactagccat gatgacccaa
     5521 tcagcttgac tattgctcat gcaggtttct tcgccactcc ctttatgcca agaaatattt
     5581 gataaatttt gtgtaaattt ttgcccttct tcgcgcatat tatcgtttgg ttccacagca
     5641 ctaatttggc atccaaacat ttctcccaac atcttagtaa gttttccagt tccagctcct
     5701 acttcaacaa tatttaaatc tttaaaattt ttatttttat cattgataca agctacaagt
     5761 ttttcaagta aaaatggact ataagcaggc ctattatgat aatgctttgc aacctctgta
     5821 aaatcccctt gtttcatatt gattcctttc tctaatttta aacacaatta tatctttttt
     5881 ttattaattt acaaatcttt ctcctaaata ttaccatcca actccttgca cattttttca
     5941 aattcttgat agtatttcca agaagctact atatccggac gatgttgctt gatatgttgc
     6001 aactcataat caaggatact ttttagctgc tttctataaa aactatgttc cttaaaaaac
     6061 aataaaatgt ctttctcctt tatctttttt tcattctcca aattaatctg tttatctatg
     6121 tttttacata aatgttggat atatattttt actttatcaa ataagtagct attttgatac
     6181 aatttctcaa actctacttg tgacattgct ataaaaaaat ccttataata ttttttattt
     6241 ataaaatatt tacttatatc aattaatttt ttctgcatat cattatggat tggaaataga
     6301 gtatatctaa tatctatatt tttatttttt acaaaatata gtcttaaact tgaaaagaaa
     6361 aatattttat aattatcaca attttcatat atatttaaaa ttctaggaat agcaaataag
     6421 tatccttcac ttcctcctag actatactga aaaaaatcca tattttgaat aattggaaaa
     6481 ttataattat ctttaaaata tttaaataca tccagcatcc cttctggata aatttcatga
     6541 aaatctatat aaaaaatttt attataattt attttagaaa taaaactatc cacactcatt
     6601 gactcatttg taattggtcc agaataaaca aactgattga gatcaacttt atctcctcca
     6661 aaagcatatt taatccactt aaatccttga ctaaaatcat aatcaagact aaattcggta
     6721 tccaatgaaa cataatcatc tatgatatga ttagcccaag tttttaatct tgataatgga
     6781 tccctagtta agatatagat atctttattt agcaatacca aataaaacaa ctttaaacca
     6841 tcttgatgtt ttggttccat accatgttca aaaacaagaa tatttttata attccaaaaa
     6901 aaaattaaat cttgatattt atttatataa taaacatttg gatcttttaa agcaagatta
     6961 caagttctaa atatacttgg actatatcct gaccacaata aaaaatagga aaaagccgta
     7021 tgaccagaac atcctttaag caccatga
//
LOCUS       DARGBD010000088         6685 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.088, whole genome shotgun sequence.
ACCESSION   DARGBD010000088 DARGBD010000000
VERSION     DARGBD010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6685
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.088"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            3..149
                     /locus_tag="SFZ04_001465"
     CDS             3..149
                     /locus_tag="SFZ04_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004316388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065713.1"
                     /translation="MEILDFILIVIFVFLMIVLVIGFNHQMMQKNKEREERFKKYKKG
                     EQNE"
     gene            142..711
                     /locus_tag="SFZ04_001466"
     CDS             142..711
                     /locus_tag="SFZ04_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEG8065714.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLIKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(741..1106)
                     /locus_tag="SFZ04_001467"
     CDS             complement(741..1106)
                     /locus_tag="SFZ04_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEG8065715.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKYFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            1229..2221
                     /gene="pheS"
                     /locus_tag="SFZ04_001468"
     CDS             1229..2221
                     /gene="pheS"
                     /locus_tag="SFZ04_001468"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEG8065716.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            2218..4539
                     /locus_tag="SFZ04_001469"
     CDS             2218..4539
                     /locus_tag="SFZ04_001469"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEG8065717.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIELKEEIQTNLLLSLRLAQIESLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSCKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYYKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYVCELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            4536..5822
                     /gene="aroA"
                     /locus_tag="SFZ04_001470"
     CDS             4536..5822
                     /gene="aroA"
                     /locus_tag="SFZ04_001470"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEG8065718.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            5812..6645
                     /locus_tag="SFZ04_001471"
     CDS             5812..6645
                     /locus_tag="SFZ04_001471"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEG8065719.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIKKFKI
                     N"
BASE COUNT         2450 a          779 c         1202 g         2254 t
ORIGIN      
        1 ttatggaaat tttagatttc attctaatag ttatttttgt gtttttaatg attgttttgg
       61 ttataggttt caatcatcaa atgatgcaaa aaaacaaaga aagagaagaa agatttaaaa
      121 aatataaaaa aggagaacaa aatgagtaaa aaagtattaa ttccattggc tcaaggtttt
      181 gaagaagctg aatttatagg aattgcggat gttttaaaac gagcaaaaga gttaaatcca
      241 gatttggaag ttgttatagc ttcgttaaac agtgagttat tgataaaagg tgctaatagc
      301 attagtataa aagcagattg ttctatagag gatgttgata tagaaaattt agatgctatt
      361 gctttggcgg gtggctttga aggtatgatg aatcttaaga attcaaatgt tattttaaat
      421 atcattaaac aacttcatag caaaaataaa attgttgccg caatctgtgc ttctcctata
      481 gttttaaatg aagcaggtgt tttagagggc gagtttgctt gttatcctag ttgtgaagtt
      541 ggacttaatg gaaatcgtgt taacaaggct gtagttgtaa ataaaaatgt tataacttca
      601 gcaggtccag ctacggcaat tctttttggt ttagaactag ctaaaaagtt atgcggtgat
      661 gaaatttatc aaaaattata tgagggaatg ttgctacctt tgacaaaata gtttaaatgg
      721 tagtttttct accatttaaa ctaaaataaa gcttgaggat tttctttttt tgttttttcc
      781 ttaggcagtt caaaacctcc aagcatatga aaatgcaaat gaaaaacttc ttgtccacta
      841 ttttttccac agtttgttac caagcgatat ccacttttat ctacacctaa aagaacagct
      901 aattcttgta tgaaacttgt cattttggcc ataagttcag gatcaaattc ttgaaagtct
      961 ttaaaatatt ttttagggat tataagtata tgtatgggtg ctttgggtgc aatatcatga
     1021 aatgctagaa aatcgtcact ttcaagcact ttattgcatg gaagtttacc ttcaactatg
     1081 agttcaaaaa ttgttttttc ttgcattatt tatccttttt tattgttggt ttgatacaat
     1141 tatatcttta aagtttggtt tttatgctga atttaaaata gtttttaata gaattagaat
     1201 ttgaaatatt ttatttaagg taagaaaatt gcaaaatttt atagaacaga ttcaaaaatg
     1261 tgagaattta aatgatttgg aagccattag gatttccgtt cttggaaaaa aaggtatttt
     1321 aacagaaggc tttacaaagc ttaaagagtt agaagatgag gcgaaaaaag aatttgctgc
     1381 taaattaaat gcacaaaaag aaatatttaa tgaggcttat ttagccaaat ttaaagattt
     1441 ggaaaatctt gctttagaag aaagaatgaa acaagatgct ttaaatttta actattttga
     1501 tgaaagtatt acaacaggtg ccttgcatcc tgttatgagc accatggata aaatcataga
     1561 atattttata gctttgaatt ttagcataga aaaagggcct ttaatagaag atgactttca
     1621 taattttgaa gcgttaaatt tacctaaatc tcaccccgca agagatatgc aagatacctt
     1681 ttattttgat gataaaaggc ttttaagaac acaaacttcg ccagtgcaaa tacggacaat
     1741 gcttgcacaa aaacctccta ttaggatgat agcccctggt gctgtattta gaagagattt
     1801 tgatattacg catactccta tgtttcatca agttgaaggc cttgtggtgg aagaagggca
     1861 aaaggttagc tttgcaaatt taaaaagtgt attggaagat tttttgcgtt atatgtttgg
     1921 agatgtgaaa gttcgttttc gtccaagttt tttcccattt acagaacctt ctgctgaagt
     1981 tgatatttct tgtgtatttt gcaaaggaaa gggttgtaga gtttgcaaac atacaggttg
     2041 gcttgaagtt ttaggatgtg gaatagttga tcctaatgtt tataattttg ttggttatga
     2101 aaatgtaagt ggttatgctt ttggattggg agtagaacgt tttgcaatgc ttttgcatca
     2161 aattccagat ttaagatctt tatttgaagg tgatttgaga ttattggagc agtttagatg
     2221 ataattacta aaagttggtt gaatgattgg ttagaacttg aagaaataag ttcagataaa
     2281 atagctaaaa ctttaaactc tataggtata gaagttgata gggttggcgc tttaaaggct
     2341 ccagataaag ttgttgtagg ctatgttaag gaaaaaatta aacatgaaaa ttcagataaa
     2401 ttaagcattt gtcaagttga tatcggaagt gaaaccttgc aaattgtctg tggtgctgcg
     2461 aatgttgatg caggacaatt tgtagctgtt gcaactaaag gtgctatcat gccaaacggt
     2521 atggaaataa aagaagcaaa attgcgagga gtggattctt gtggtatgct ttgttctagt
     2581 ttagaactgg gttttgaaaa aatcaatgaa ggaattatgc ttttagatga gagtataggg
     2641 aaattagaac ttgggagacc tttaaatact tatgaaattt ttaatgatga gctaatagaa
     2701 gtggaactta ctcctaatag gggtgattgt ttaagtattt atggtatagc tcgtgattta
     2761 gccgcagctt taaatttaaa tttaaaagaa ccaaaaccat ttaaagaaag tgaaaatgtt
     2821 ttaggtatcg gtagaatttt gcgcttagca gctgagaaag aacttaatgg actttataat
     2881 tatcgagcca tagagctaaa agaagaaatt caaacaaatt tattgcttag tttaagactt
     2941 gctcaaattg aaagtttggg aaaaaattcc atagaaaatt tattaaatta tgcaacgcat
     3001 tcaactggtg ttctttttaa tgcttatgat ttaagtagtt tttctgaaaa agatgaagaa
     3061 tttaccatta atttaagcaa gcaagtgcat ggagaaacaa aagtatcttg caaagataaa
     3121 cttttaagct ttagcggaat tttccaaaat aatgaaagta gatgtaaaga tgattctaaa
     3181 ataattatta ttgaggctaa ttataccgat ccattggtaa ttgcagatgc taaaatatat
     3241 tataaagatc aagatgaaaa aatgctttat agaagtttta ggggaagtga acctaaatta
     3301 aatttaggaa tggatttttt gcttggtatt tttgagcaga ttccaaatct tgttatttat
     3361 agttcttctc aacaaatttt aactgacaaa gaattaccaa tcataccaat aagtattgaa
     3421 ggtattagcg atataatagg acaaaatgtt gataaagatg aagtattaaa aatattaaag
     3481 aaattaggtt ttgagctcat actttcaggt gaagggctta taaatgttaa agcaccttta
     3541 catcgtcctg atattaaaaa tttatcagat atttgcgagg aagttgtaag aattataggt
     3601 attgataata ttgcttccaa gggtttagaa tttatagaaa aaaatcgttt aaattctgca
     3661 tataaaaatt atattgagtt tttaaattta agaaaaagag cagtagctag tggttatttt
     3721 gaaagcttac attatgtttt ggataatgga gaagaactta aaagattagg ttttgactct
     3781 gttaaattaa aactaatcaa tccaattaca gcagaactta atactttaag aacaaccctt
     3841 ttaaatcatt tgttaaatgc agcaagttta aatgcaaaaa attctaaaaa aattattaaa
     3901 ctttttgaat taggggctgt tttcaatgtt aataatcaag aattaaatcg tattgcattt
     3961 atccattctg gcttaaaaga agaagctaaa atttccaaca aggccaaacc tgaatcggtg
     4021 caattttatg attttctttt agatattaaa aatattatag gtgattttaa actaaaatca
     4081 tcaaaatata atattttaag cccttatgaa caagcagata tttatctatc ggatattaaa
     4141 gtaggtttta taggccgttt gcatttaaaa atagaaaatg agagagattt accaaaaaca
     4201 tatgtttgcg aacttgattt agatttaatc aggcaagatt ttaaaatagc taagccttac
     4261 tccaaattcc cagctatcac tagagatctt agcgtgttaa tacctaaagg ttttgaatac
     4321 aatcagatta aaaattgtat cgaagaattg aatttagaaa tacttgaaaa ttttcgttta
     4381 gttgatattt atagtgatga aaaccttaaa gaattttata gcattactat aagtttttct
     4441 tttagggata taaataaaac tctagaagat aatcaagtga atgaatgtat ggataaaatt
     4501 ttaaatactc ttaaaaattt gggtcttgat ttaagatgaa aatttacaaa ttgcaaaccc
     4561 ctgtaaatgc tatacttgaa aatatagcag cagataaaag catatctcat cgttttgcta
     4621 tattttcgct tttaacacaa gaagaaaata aggctcaaaa ttatctctta gctcaagata
     4681 ctttaaacac tcttgaaatt ataaaaaatc ttggagctaa aattgaacaa aaagattctt
     4741 gcgtcaaaat tataccccct aaagaaattt tatctccaaa ttgtatttta gactgtggaa
     4801 attcaggaac tgctatgcgt ttgatgatag gatttttagc aggaatttct ggtttttttg
     4861 ttttaagtgg agataagtat ttaaacaatc gtcctatgag aaggataagc aaaccactta
     4921 ctcaaatagg cgctagaatt tatggaagaa atgaggcaaa tttagctcca ctttgtatag
     4981 aaggtcaaaa attaaaagct tttaatttta aaagcgaaat ttcttcggct caagttaaaa
     5041 cagctatgat tttatctgct tttagagctg ataatgtatg cacttttagt gaaatttctc
     5101 ttagtcgaaa tcatagtgaa aacatgctaa aggctatgaa agctccaata agggttagta
     5161 atgatggctt aagtcttgaa ataaatcctt taaaaaaacc tttaaaagct caaaatataa
     5221 tcattcctaa tgatccttct tcggcttttt attttgtttt agcagctatt attttaccta
     5281 aatctcaaat tattttaaaa aatattttgc ttaatcctac tcgtatagag gcgtataaaa
     5341 ttttgcaaaa aatgggtgcc aaacttgaaa tgacaataac tcaaaatgat tttgaaacta
     5401 ttggtgagat cagggtggag tctagcaagc ttaatggcat agaagttaaa gataatatcg
     5461 cttggttaat agatgaagcg cctgctttgg ctatagcttt tgctttggct aagggtaaat
     5521 ctagtttaat aaatgctaaa gaattacgcg ttaaagaaag cgataggatt gctgtgatgg
     5581 ttgaaaatct aaagctttgt ggtgttgaag ctagagaact tgatgatggt tttgaaatag
     5641 aaggtggatg cgaactaaaa tcttcaaaaa ttaaaagcta tggagatcac cgtattgcta
     5701 tgagttttgc tattttaggt ttgctttgtg gaatcgagat tgatgatagt gattgtataa
     5761 aaacttcttt tccaaatttt atagagattt tatcaaattt aggagctagg attgattatt
     5821 gaattagcaa aaaactatgg tttttgtttt ggtgttaaaa gagctattaa aaaagcagaa
     5881 caaataaaag atgctgcaac tataggccct cttattcaca ataacgaaga aatttctcgt
     5941 ttgcaaaaaa attttaatgt caaaactttg gaaaatatac aagctttaag taatgaaaaa
     6001 aaggctatta taagaactca tggtattaca aagcaagatt tagaagaatt gagaaaaaaa
     6061 gatatagaaa tttttgatgc cacttgtcct tttgttacaa aaccacaaca aatttgcgag
     6121 caaatgagta aggagggtta tgaagttgtt atttttggag atgaaaatca tcccgaagtt
     6181 aaaggagtca aaagttatgt aagtacaaaa gcttatgtag ttttggataa aaaagaactt
     6241 caaaatataa aacttcctaa taaaatagct gtagtaagcc aaacaactaa gaagcctgag
     6301 cattttatgg agatagtaaa ttttttaata cttaaaacca aagaagtaag agtttttaac
     6361 actatatgtg atgcaacctt taaaaatcaa gatgccatta aagaactctc gcttaaaagt
     6421 gatgttatgg ttgttgtagg gggtaaaaac tcagccaata caaaacaact ttttttaatt
     6481 gcaaaaacca attgtgaaga tagctatcta attgaaaccg aagaagagtt aaaaaaagaa
     6541 tggtttttgg ataaaaaaca ttgcggcatt agtgcaggtg ctagtactcc tgattggatc
     6601 atacaaaaag ttatcgccaa aataaaaaaa tttaaaatta attaaaaaat gttttcaaat
     6661 agaataaaaa agtcaaaaat ttaaa
//
LOCUS       DARGBD010000089         6606 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.089, whole genome shotgun sequence.
ACCESSION   DARGBD010000089 DARGBD010000000
VERSION     DARGBD010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6606
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.089"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1998
                     /locus_tag="SFZ04_001472"
     CDS             <1..1998
                     /locus_tag="SFZ04_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002916381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEG8065720.1"
                     /translation="FMDSVFGNKNNENIKLNFSNAHFEDNAYFNNSEFYSYADFHECE
                     FDDIACFYGVKFYKTPNFSACYFKEPKAVNLINVDIDKLDFKSVEKYIEDNYEDESYK
                     NKIKGIQDEKEIFKIQNEHQLRYAKNLKDSFRVIKDVLITQNNTLEAQEWHKLELYAK
                     EKELEIQLGGDNKGSIRNNRKIKKLQIKKNNYEVNMFSKFKDLGDIYVKICDFVVCFI
                     MLIGRSIFGFLLSIIEIFCNVIKSICKIIQIILSCIFCITSIDRILKLEYLKFYRKIS
                     SSGKTMLDYTLWFDCILLQVYRNTSDHHTNFLKILNFTILMISLYAFIGFLFSKTADF
                     ISYFDQISITIASYIILLVFALILFNVKKQLYQYGVILIFMLCGAFTISMILFLSSEY
                     ISTFCFLIYFLGVLIFYLFFICKIKLFIFIVRFFAYMIFIATIITKPQFISPFTSVFS
                     SDKLYESQFEKSLNDLNASAIMILTDISQDNFNLPSKDQNISFTELNSAKALIIANKE
                     KLKEILSKVYNDKYVSDYKKVLNELENNTSNIKNIIEEIDNKNNNSVVSAQLNKFLKL
                     NFSQKIDILYAIKSNFSISEKLSPEQMALFDQKDSQDKLKSVLALLKFKSSFEGILKI
                     INQDEITENTIKSTSVLYGIILLLCIFSLQKTARKNSIVPS"
     gene            complement(2028..2729)
                     /locus_tag="SFZ04_001473"
     CDS             complement(2028..2729)
                     /locus_tag="SFZ04_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEG8065721.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEISYNSPNIID
                     RLSDPYSNDTQATYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDNYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(2716..3927)
                     /locus_tag="SFZ04_001474"
     CDS             complement(2716..3927)
                     /locus_tag="SFZ04_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEG8065722.1"
                     /translation="MQKQTKIHGFAKFKLIIILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFETKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFGLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILTKALMIMFISTVILLVNAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKNENK"
     gene            4032..5381
                     /locus_tag="SFZ04_001475"
     CDS             4032..5381
                     /locus_tag="SFZ04_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEG8065723.1"
                     /translation="MQTLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLTQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(5405..6448)
                     /locus_tag="SFZ04_001476"
     CDS             complement(5405..6448)
                     /locus_tag="SFZ04_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG8065724.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNILNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVSCHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         2437 a          968 c         1027 g         2174 t
ORIGIN      
        1 tttatggatt ctgtttttgg aaacaaaaac aatgaaaata ttaaattaaa tttttcaaat
       61 gctcattttg aagataatgc ttattttaat aattctgaat tttatagtta tgctgatttt
      121 cacgagtgtg aatttgatga tatagcttgt ttttatggag tgaagtttta taaaactccg
      181 aattttagcg cttgttattt taaagaacca aaagctgtaa atttaatcaa tgtcgatata
      241 gataagctag attttaaatc agtggagaaa tatatagaag ataactatga agatgaaagt
      301 tataaaaaca aaatcaaagg aatacaagat gaaaaagaga tttttaaaat tcaaaacgaa
      361 catcaattaa gatatgcgaa aaatttaaaa gattctttca gggttataaa agatgtttta
      421 atcactcaaa ataacaccct agaagctcaa gaatggcata aattagaact ttatgcgaaa
      481 gagaaagagt tagaaattca gttaggcggt gataacaaag gtagtattag aaataatcga
      541 aaaataaaaa aactgcaaat aaaaaaaaat aattatgaag ttaatatgtt ttcaaaattt
      601 aaagatctag gcgacatata tgtaaaaatt tgcgattttg ttgtttgttt tataatgctt
      661 ataggaagat caatctttgg ttttttatta tcaattattg agatattttg caatgttata
      721 aaaagtatat gcaaaataat acaaattatt ttatcttgca tattttgtat aacttcaatc
      781 gacagaattt taaagcttga gtatttaaaa ttttatagaa aaattagtag ttctggaaaa
      841 acaatgctag attatacctt gtggtttgat tgcattttat tgcaagttta tagaaataca
      901 agcgatcatc atacaaattt cttaaaaatt ttaaatttta caattttaat gatttcatta
      961 tatgctttta taggtttttt attttcaaaa accgcagatt ttatatccta ttttgatcaa
     1021 atatcgataa ctatagcaag ctatattatt ttgcttgtat ttgctttaat actttttaat
     1081 gttaaaaaac aattgtatca atatggcgtt attttgattt ttatgctttg tggtgctttt
     1141 acaatatcta tgatattgtt tttatcatca gagtatattt caactttttg ctttttgatt
     1201 tattttttag gcgtattgat tttttatctt ttttttattt gtaaaattaa attatttatt
     1261 tttattgtga gattttttgc ttatatgatt tttattgcaa cgattataac aaaaccacaa
     1321 tttataagcc cttttacaag tgtattttca tcagataaac tttatgaaag tcaatttgaa
     1381 aaaagtttaa atgatttaaa tgcgagtgct attatgattt taaccgatat ttcgcaagat
     1441 aattttaacc ttccttcaaa agatcaaaac atttctttta cagagttaaa ttcagctaaa
     1501 gctttgataa tagcaaataa agaaaaatta aaagaaattt tatctaaagt gtataatgat
     1561 aaatatgtaa gtgattataa aaaggtttta aatgagctag aaaataacac atcaaatata
     1621 aaaaacatca tagaagagat agataataaa aacaacaata gcgttgtatc tgctcaactt
     1681 aataaatttt taaaattaaa ttttagtcaa aaaatagata ttttatatgc gataaaaagt
     1741 aatttttcta tatctgaaaa actatcacct gagcaaatgg ctctttttga tcaaaaagac
     1801 agtcaagata aattaaaaag tgtcttggct cttttgaaat ttaaatcaag ttttgaaggg
     1861 attttaaaga ttataaatca agacgagatt acagaaaaca ccataaaatc cactagtgtt
     1921 ttatatggca ttatcctttt gctttgtata ttttcactcc aaaaaaccgc acgaaaaaat
     1981 tccatagtgc caagctaagc cttaaagctt agcttgaaat ttcatcatca gtcttttaag
     2041 tagtattcta tagtagaaac cactcttatg gttttgatgt aaggggtgtt tttatctctg
     2101 ttgctgatgc taaattgccc ttgagaagcc ttttttatct tgcctagatg gctgtttgaa
     2161 tcttgtgcga attttatcgc tgcatttcta gcattgagcg ttgcttcttc tatcatttga
     2221 ggttttatct catttagctt ggtgtaaagg tactctatgt cataattatc gattttcgtt
     2281 actatgccaa attttgcaag acttgaaatg ttttctagta tgctttttcc aagctttacg
     2341 ttttgtgtat agatgagtaa attcgcagtg cctatgtatc ggtatgtagc ttgagtatcg
     2401 ttgctataag gatcgcttaa acgatctatg atgttcggcg agttgtagct gatctcatct
     2461 tcttttacgc cttgttcttt taaaaattta atgatatttt ctttatcttg ttctagttct
     2521 tcgtataaat ttgtaagatt gttgtttgat cttgtgaatt ttataggaag tatcaaagta
     2581 tccgcttcga cttctttttg acttaaaccc tttacactta cacttctttc aagtgtttta
     2641 aaatcactta aagccttgtt aaatccaaaa gctagaatca aacttgctaa aactatggct
     2701 aaagccataa agatattatt tgttttcatt tttttccttt attttgatta gaaaatatat
     2761 catatttgca accaatacgc aagcacacat tacaaaagca aggattatcg gcgtatttgc
     2821 gttaatagcc ccaaccacaa aagaaataag ccctgcaaaa ccaaattgca ccgttccaag
     2881 caccgcagaa gcagttccgc tatgttcttt aaaccttgcc atggctaaag tcgtggtatt
     2941 aggtgcgatg aaaccaagca tagcgatact tgtaaaaatg ctaagttcaa aaagcaagaa
     3001 atttggatga aaaaaggcat ttacaagtaa aatcacggtc gatataaaca ttatcatcaa
     3061 agcttttgtc aaaatttttt cgctttcgta ttttaaaacc aatctcgcat tgatatttgc
     3121 acagatgaca aaacctaaag catttgcccc aaaaagcaaa gcaaattttt gctcactcaa
     3181 gccaaaaaac tgcgtaaaaa caaagcttga tcctgtgata taagcaaaca tcgccgccaa
     3241 agcaaaagaa gcacatagta tataaaccaa aaagcgttta tcgcttaaaa caaatttgta
     3301 gcttttcatc gcttcatgat gggaaaattt tttgttttta agatgaggtg cggactcttt
     3361 taaaccaaaa agtatcatca aaaaaagtaa aattcccaaa gcaaacaaag tcgcaaaaat
     3421 actatgccat gaaaaatact ctagcaaaat tcccccaaaa gttggcgaaa gcataggagc
     3481 aagagagcta aaaaccatca tcaaagcaaa aattcctgca gcttctttgg tctcaaacaa
     3541 gtcattgaca atagcccttg cgataaccac acctgcacaa cccccaagtg cttcaaaaaa
     3601 tctcaaagcg ataaaagcat aaatatcatc gataatcaca caaaacaaac tcgaaacgat
     3661 gaagaaaaat atccctacca aagctggaat tttacgccca aaaatatcac ttaaaggccc
     3721 atatataagc tgtcctaagg caaaagcgat aaaaaaactt gcaatactaa gttgggttaa
     3781 aaaagaatta gtttgaaaac tttgttctac atgagaaagt gcaggtaaat acatatctgt
     3841 agaaagtggc gctatgcttg acatcaaagc aaggataatg ataagtttaa atttggcaaa
     3901 gccgtgaatt ttggtttgtt tttgcatttg taatcctaat tattctaaaa gaatgatttt
     3961 aacgagtcaa tcttagaata atctttgttt ttctatgtta aatttagaga aaaattctaa
     4021 ggaaattttt tatgcaaact ttaaaccaaa atgaacaaat caaatgccca agttgtggaa
     4081 gttttatcga tatcagtact gctttatatg ctcaaatttt agataaagct aaacaagaaa
     4141 tgctaaaaca aaaaaaagaa tttgatgatg aggtaaatgc caaaagagct gaatatacca
     4201 aagctttaaa tgatttaaaa actcaaaaga tagaacaaga aaaactcata aacgagcaag
     4261 taagccaaaa gcttctttta gaaaagcaaa aatttgaaca agaacttctc acgcaaaagc
     4321 aaaatttcca aaaagaattc agcgagaaat ttaacaaaga gcatgaaaat gaaatgaaaa
     4381 tcatgcaaga agaactcgag aaaaaaagca aagagcttag cgagttttta agcataaagg
     4441 ctgaaaatga aaggctaaaa agagagcaaa aagaaaatga agaaagattg aaatttcaag
     4501 ccaaagaaga ggcttttaaa gaatttaaag aacaagaaag caaaaatttg gaatttgaaa
     4561 gagaaaaaat gcgtcttgaa tttcaaaaaa gcactcaaga gcaagatctt aaatacaaag
     4621 aactagaaac gaattttaaa agtgtagccc aaaagttaga agacgcacaa cgcaggatag
     4681 agcaaggctc acagcaactc caaggcgaag cagccgaact actcatagaa gaatacatac
     4741 aaagtgagta tttaagcgat gaagtaaaag aagtgccaaa aggcgtaaat ggagctgatt
     4801 gtctgcatat agtaaaggat aattttggaa atatttgtgg aagtattttg tatgagagca
     4861 aacgcactaa agaatttaat aaagaatggc ttgataaact taaactagat agtatagccg
     4921 caaaaagtga tatagcagtt ttgatcacaa aaactatgcc aaaagataaa gaaaaaacgc
     4981 attttaaaga aggaattttg atttgtactt ttaatgaatt caaaggtgtt ttagcagtgc
     5041 ttagagaaag cattataaac gcttataaac tcaaaaatgc cctgcaaaac aaagatgaaa
     5101 aaaatcacat tttatacgaa tacttaaatt ccaaggaatt taatacgcaa atcactttta
     5161 tactcaaaac ttaccaaaat atgaaagaag agttagaagc tgaaaaaagg gctttgcaaa
     5221 atatatggaa aaaaagagaa agagctatag aaaatctaag ttttaattcc actgccatag
     5281 tgagttcttt aaatgcgata tttagcgact tacaaggtgg aaatttgata ggcgaagaag
     5341 ggattaaaag tcttgaaaat ttagccaaag atgaggatta attttgggct tagcccaaaa
     5401 ttaatcattc tcctgggaag tgatttggat ttttccaagg tccgtatttt acttttatgt
     5461 attctttagg gtctaaattt tgttgtggtg aagcaaaata ctcaggtttt aatgatgggg
     5521 atttgctata agctgtatca agtcctgcac gattttctgt agtggttata ggcattctta
     5581 caaaacctgt attgacataa gctgctatat ccagtgcatc ttcatcgctt aatataggat
     5641 tatctgcact cgcaccaaaa ggcatggctg attttaaaaa tcttgctaaa aatggtatca
     5701 tagccatgtg tccaccatca ggatagataa gtaaagatgg atataaatgt ccgctacctt
     5761 gttcgtaatt atcatttttt accccaagtc ctctttcgcc atgacaagaa acgcaatttt
     5821 cttcaaagag ctttttccca cgcacagggt cagctgggcg atttggaaaa ttcatcttag
     5881 caaaaaaatc tccttcaagc tttacgccgt ctttgatacc ataagcttct tttagccatt
     5941 taaaataagc taaaattgct ttcatttctt tagaatcatt aggaaatcta tgagagtcag
     6001 ttccgcccat tccgcgaatt ctatcttcaa cagagatgat tttcatcgtt tctatgtcaa
     6061 gtcttggata attgtttagg atatttaaaa atggaataac atattttttt gtccctggca
     6121 aaccattgcc gtcattgtcc atgtgacagg aaatacagtt tacttcgttg cttgtctttt
     6181 ttagcttgct atagggtcct agagtacttt ctgtcttgct taaaagctct atgccataac
     6241 ggattaaatc cccttgctta ccttttggaa catcattgat gcttaaattt ttatttggcc
     6301 attcttgcac aggtcttttg gaaagttcct taaaatactc tactccttcc ttgtcgctta
     6361 attcttctcc tactttgtaa tcactcacgc ttttagcact aagactcaaa ctaagacata
     6421 aaccaagcaa taaaatgtgt tttttcatga ttttcctcct ttttatttgc agttcaaatt
     6481 gattttagtg tattttttct taaatattaa gcataataag aataatttaa ataaaattaa
     6541 attttagagt gttactaaaa gtaatatatt tttaaagcat ataattaata tttattaaaa
     6601 ttttat
//
LOCUS       DARGBD010000090         6596 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.090, whole genome shotgun sequence.
ACCESSION   DARGBD010000090 DARGBD010000000
VERSION     DARGBD010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6596)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6596)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6596
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.090"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..74)
                     /locus_tag="SFZ04_001477"
     CDS             complement(<1..74)
                     /locus_tag="SFZ04_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M15 family protein"
                     /protein_id="HEG8065725.1"
                     /translation="MKNNPYFKESEFKCKCGKCELPQNV"
     gene            223..657
                     /locus_tag="SFZ04_001478"
     CDS             223..657
                     /locus_tag="SFZ04_001478"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065726.1"
                     /translation="MLKSFENELLELLKDFKVRMYLGEFEDTQNIASCINNLDASLLL
                     DFEGESYKDLENKVGTWKLYILTHTKSKAPKHRIDAKHKLFDAIEAVDKVLLNAEPSN
                     GFRIELKDLKKVYEGISDHGYLSIYARTLQSSFLPKDDFLRI"
     gene            659..1474
                     /locus_tag="SFZ04_001479"
     CDS             659..1474
                     /locus_tag="SFZ04_001479"
                     /inference="COORDINATES: protein motif:HMM:NF021627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065727.1"
                     /translation="MLFINKENLVEVSNDKPIKVAIKGEWKGHNNGRFKVDDKDLNSM
                     IDNFNQKKIDLVIDYEHQSLKNEKAPAAGWIKELYLENDALMAKAEFNEEAKKYIANK
                     QYRYLSPVFEFNSKDNKSGELVRAKLHSVALTNTPFIDELGELIANKNNIHQNKGEKM
                     DEKIKELESQIIALKNENSSLALQNEALKKQNEESAKNLANSLVDNALNSGKIANSQK
                     EWAISYACKDLEGFKSFLDTKNDQVQVPKNNVFANKNTAKTNEFDVVKMMLGD"
     gene            1477..2004
                     /locus_tag="SFZ04_001480"
     CDS             1477..2004
                     /locus_tag="SFZ04_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065728.1"
                     /translation="MAKAKKETQNLENEDLETGDLPKALSLEDENLVNEEAVSENETT
                     KEFINEKGEEMPSKVTPKSLSNDPLIAMPKSLESFINKDLFSINAKIDLETNGSLALG
                     TLLISEDFGESFKKCPNEDISAKENVKLAMLKDHALSSGVYGVLLAGEINLKGVHVSA
                     VKKAFMQNLIINTKE"
     gene            2007..2984
                     /locus_tag="SFZ04_001481"
     CDS             2007..2984
                     /locus_tag="SFZ04_001481"
                     /inference="COORDINATES: protein motif:HMM:NF015802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HEG8065729.1"
                     /translation="MDLEQLLELFSSTKITEVINQTKASPRFVSDTFFKDKIPSLEST
                     VRVEIIKGAGIVLNSISDNGEHSLENTKDAYILNIPLPRFALAKRISASEINSLRSLA
                     LQEAQAKSLSGALGVLVKEMKESFNTTLEYMANGALFGKILDGKGNVLFDFGSASKKA
                     ISVKKDGSVTLDSVCDAIDSAIIDEFGTSADYEVLCGNELFAAISNLALSEDLYKNHL
                     ASRDEKDKSLILYGTKYRRYSAKYKNTNGKSVEFLKGTEGMVVPKDNSNRIYYTRANH
                     TDALGKAPSLMFVSKPEILPRGAGIEIVGEMRAMPVCTRPNGLIKLVLE"
     gene            3100..3558
                     /locus_tag="SFZ04_001482"
     CDS             3100..3558
                     /locus_tag="SFZ04_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 family protein"
                     /protein_id="HEG8065730.1"
                     /translation="MNYQDILEEKLITETKTHFFMIDEKDLIKELSVHAIAELSDLNA
                     DGVCDKEVIDDAINDAQSYIASFIKIPKNPTPLLKDICVKLTIMELKRRNDFPKESLE
                     EIREWANDLLLKMANKKIPTEIDEDNFIPQNKVRAFKIKRKRMDLRRLNG"
     gene            3551..4150
                     /locus_tag="SFZ04_001483"
     CDS             3551..4150
                     /locus_tag="SFZ04_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HEG8065731.1"
                     /translation="MAKNLTSTTKPKMAKVGCGLQVGAESETPARKDKFTSSAKSQNN
                     LKDLAKELYIAGFDIFKIAKILNRNEKTIRNYKAKDGDWDKQKANLLTSKIKDKESAS
                     LYESFTEQMFCAIENINTDEKMNAEKKTEAIARIGDSFSKMRKVARLEDPSSYRLNVA
                     KKVVEIIISHLKNDKDCVAKLVSLLESGVIEKEILAMDI"
     gene            4150..5820
                     /gene="terL"
                     /locus_tag="SFZ04_001484"
     CDS             4150..5820
                     /gene="terL"
                     /locus_tag="SFZ04_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HEG8065732.1"
                     /translation="MLFSKEELDEFLISNEQKHENTPNELKGAMQRKDFLEWMDELKN
                     ELKTQFLHESHLDPTLKEERIKRASVDFDYFARTYFPHYFTIKGECGLHLHLNEVFTK
                     IALKKESKGEKHAIAAPRAHGKSTYTSQLFPLWCLVFNYKSFIVEISDAVELMEGMLE
                     AIKAELEDNPHLKLDFPEVVGIGKTWRVGEFVSNNGVKIKAFGSGKRLRGVRYGVKRP
                     DLVILDDLENDTNVRSKDQRDKLEDWVDEAVLNLGSADGSLDVLYIGTILHNDSVLSR
                     KLKLGFWNPKVFRSIEEFPQRLDLWDEYAMLYRNADFNTAHQFYLKNKVLMDKGAKVL
                     WKEAKSLEDLMKLRAENLKAFNKEQLNNPRSENQIFSLDGINFYDDLPAINQYYMYID
                     PAGEKAKSDFTAITIIGKGAKGFYVAESIVKILKAQSIIKTIFNLQKIYKCRLIEIET
                     NGGQFFLKKWLQEKSLESGVFLPLRGKNNSVSKFERIESLSLAFENEELFLHKSQTML
                     INQLLEFPEGKNDDAPDSLAGAFLLARTKSSIKRRKHHFNSVSRIRRF"
     gene            5830..>6596
                     /locus_tag="SFZ04_001485"
     CDS             5830..>6596
                     /locus_tag="SFZ04_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HEG8065733.1"
                     /translation="MKKEIKSKREVILKNNSLINTLINSSYLNVLKISENDQKMIFKD
                     LSFTQAHQSRRSVILAKELQIVCENEKIKESFEYLFNPDLLSQILETYLYGLNVFEVN
                     YKLKDGFYYPILKQRDFRNFGFNENDELVYNGNGCEEIVEDKKAIYGLFGSNFLFKNG
                     DALLTKLYFPVKLKNASLKFWMEFLERFGSPWAVAKTDSDPDALASEIHQMLNGDSAV
                     IDKEEELDLIQPKAKANYNEIIDYLDNQIRSVVLGAN"
BASE COUNT         2545 a          831 c         1238 g         1982 t
ORIGIN      
        1 acattttgag gcaattcgca tttaccacat ttacatttaa attcgctttc tttaaaataa
       61 gggttatttt tcattttcac tcctttaaaa tgtcgtaagt ttagttaaaa agctgaccca
      121 aaaactagaa aaattttgtg ctaaaactct ttgaaaaaat aatttgcttg attaaaaaaa
      181 gaactcattt taaaattgcc gctaattttt aaaggatgaa aaatgcttaa aagttttgaa
      241 aatgagcttt tagaactatt aaaagatttt aaagtaagaa tgtatttagg cgagtttgaa
      301 gacacccaaa acatagcaag ttgtattaat aatttagatg cttcactttt gcttgatttt
      361 gaaggagaaa gttataaaga tttagaaaat aaagtgggaa cttggaaact ttatatttta
      421 acccatacaa aatcaaaagc tcctaaacac agaattgatg ctaagcataa attatttgat
      481 gcaatagaag ctgttgataa agtgctttta aatgcagaac ctagcaatgg ttttagaata
      541 gagcttaaag atcttaaaaa ggtttacgaa ggaataagcg atcatggcta tttaagcatt
      601 tatgcaagaa ctttgcaaag tagcttttta ccaaaagatg attttttaag gatttaaaat
      661 gctttttatc aataaagaaa atttagtcga agttagcaat gataagccca taaaagtggc
      721 aattaagggt gagtggaaag ggcataataa tggcaggttt aaggttgatg ataaagattt
      781 aaactcaatg attgataatt ttaatcaaaa aaagattgat ttggttattg actatgagca
      841 tcaaagctta aaaaatgaaa aagcacctgc tgcaggttgg attaaagagc tttatttgga
      901 aaatgatgcc ttaatggcta aggctgagtt taacgaagag gctaaaaaat atatagcaaa
      961 taagcaatac cgctatttat cccctgtgtt tgaatttaat tcaaaagaca ataaaagtgg
     1021 agaactagta agagctaagc ttcactcagt cgcactaact aatacaccat ttattgatga
     1081 gctaggcgaa ctcattgcta acaaaaataa tattcatcaa aacaaaggag agaaaatgga
     1141 tgaaaaaatc aaagagctag aatctcagat tatagcttta aaaaatgaaa atagctcact
     1201 cgctttacaa aatgaagctt taaaaaaaca aaacgaagaa agcgctaaaa acttagctaa
     1261 ctctttagtg gataatgctc taaatagtgg caaaattgct aattcccaaa aagaatgggc
     1321 aatatcctat gcttgcaagg atttagaagg ctttaaaagc tttttagata ccaagaatga
     1381 tcaagtgcaa gttccaaaaa acaatgtttt tgcaaataaa aacacagcaa aaactaatga
     1441 gtttgatgtt gtgaaaatga tgttagggga ttaaaaatgg ctaaagctaa aaaagaaacc
     1501 caaaacctag aaaatgaaga cttggaaact ggagacttac ctaaagcttt gtctttagaa
     1561 gatgagaacc tagtcaatga agaagctgtg agtgaaaatg aaaccactaa ggaatttata
     1621 aatgaaaaag gagaagaaat gccatcaaag gtcacaccaa aaagcttaag caatgatcct
     1681 ttaattgcta tgccaaaaag ccttgaaagt tttatcaata aagatttgtt ttcaattaat
     1741 gcgaaaatag atcttgaaac taatggaagc ttagctcttg gaacgctttt aatcagcgaa
     1801 gattttggag aaagctttaa aaaatgtcca aatgaagata ttagtgcaaa agaaaatgtt
     1861 aaattagcaa tgcttaaaga tcacgctctt agttctggag tttatggggt tttattagca
     1921 ggagaaatca atttaaaagg cgttcatgta agtgcggtta aaaaggcttt tatgcaaaat
     1981 ttaattatta atactaagga gtaaaaatgg atttagagca acttttggaa cttttttcaa
     2041 gtacaaaaat aactgaagtt attaatcaaa ccaaagcttc acctcgcttt gtaagtgata
     2101 ctttttttaa ggataaaatc ccaagtttag agagcaccgt aagggttgaa attataaaag
     2161 gtgctggaat tgttttaaat agcatttcag ataatgggga acattcttta gaaaatacta
     2221 aagacgctta tattttaaat atacctttac cacgctttgc attagcaaaa agaatcagtg
     2281 cgagtgagat taattcttta aggtctttag cattgcaaga agctcaggct aaaagcttaa
     2341 gtggagctct tggggttttg gttaaagaaa tgaaagaaag ctttaatact acgcttgaat
     2401 atatggcaaa tggtgcttta tttggcaaga ttttagatgg caaaggaaat gtgctttttg
     2461 attttggaag tgcaagtaag aaagctatta gtgttaaaaa agatgggagt gtgactttag
     2521 acagtgtttg tgatgcgatt gattcagcaa ttattgatga atttggaaca agtgctgatt
     2581 atgaagtgct ttgtggaaat gaactttttg cggctatttc taacttggca ttaagcgaag
     2641 atctttataa aaatcatctt gcaagtaggg atgagaaaga taagtcctta attttatatg
     2701 gcaccaaata tcgccgttat agtgcaaaat ataaaaatac aaatggaaaa agcgttgaat
     2761 ttttaaaagg cactgagggt atggttgtgc caaaggataa ttctaatcgc atttattata
     2821 caagagcaaa tcatactgat gctttaggaa aagcaccaag tttaatgttt gtttctaagc
     2881 ctgagatttt acctcgtggg gctggaattg aaattgtagg cgaaatgaga gccatgccag
     2941 tttgcaccag accaaatgga cttattaagc ttgttttaga gtaaaacgca caattttagc
     3001 tttaaaggca aaaaatgctt ttaaagctaa aaagatatta gaaaaagatt ttaaacgatt
     3061 ttaaccatat tttaaccaca ttaaaaaagg tttttttaaa tgaattatca agacatttta
     3121 gaagaaaagc ttatcacaga aactaaaacg cattttttta tgatagatga aaaggattta
     3181 atcaaagaat taagcgttca tgccatagca gagcttagcg atttaaatgc tgacggggtt
     3241 tgtgataaag aagtgattga tgatgctatt aatgatgcac aaagttatat tgcaagtttt
     3301 ataaagatac ctaaaaaccc aactcctctt ttaaaagata tctgtgtaaa gcttacaatt
     3361 atggaattaa aacgccgaaa tgattttcca aaagaaagct tagaagagat tagagagtgg
     3421 gctaatgatt tacttttaaa aatggcaaat aaaaaaattc caactgaaat tgatgaagat
     3481 aactttattc cacaaaacaa agttagagcg tttaaaatta aaagaaaaag aatggattta
     3541 aggagattaa atggctaaaa atttaacttc caccacaaag cctaagatgg caaaggtcgg
     3601 gtgtggcctt caggtgggtg cagagagtga aactcctgct cgtaaggata aatttacttc
     3661 atccgcgaag tctcaaaaca acttaaaaga tttagcaaaa gaactttata ttgcaggttt
     3721 tgatatattt aaaattgcaa aaattttaaa ccgcaatgaa aaaacgatta gaaactacaa
     3781 agccaaagat ggcgattggg ataagcaaaa agctaatctt ttaacttcaa aaataaaaga
     3841 taaagaaagt gcctcattat atgaaagttt tactgagcaa atgttttgtg cgattgaaaa
     3901 tataaatact gatgaaaaaa tgaatgcaga aaagaaaact gaagccattg caaggatagg
     3961 cgatagcttt tcaaaaatga gaaaggttgc aagattagaa gatccaagta gctatcgttt
     4021 aaatgttgct aaaaaagtgg ttgaaattat cataagtcat ttaaaaaatg ataaagattg
     4081 cgtagcaaaa cttgtatcac ttttagaaag tggagtgata gaaaaagaaa ttttagcaat
     4141 ggatatttaa tgcttttttc caaagaagaa ctcgatgagt ttttaatctc aaacgaacaa
     4201 aagcacgaaa acactccaaa tgaactaaaa ggtgctatgc aaagaaaaga ctttttagaa
     4261 tggatggatg agctaaaaaa tgaattaaaa actcaatttt tgcatgaaag ccatttagat
     4321 cctactttaa aagaagaaag aattaaaaga gcgagtgtgg attttgatta ttttgcaaga
     4381 acttattttc cgcattattt taccattaaa ggagaatgtg gcttacattt gcacttaaat
     4441 gaagttttta caaaaatcgc acttaaaaaa gaaagtaaag gtgaaaaaca cgccatagct
     4501 gcaccaagag ctcatggtaa atccacctac acttcacaac tctttccttt gtggtgctta
     4561 gtttttaatt ataaaagctt tatagtagag atttcagatg cggtcgaact tatggaagga
     4621 atgcttgaag ctattaaagc agagcttgaa gataatccgc atttaaagct tgattttccc
     4681 gaagtagtag gaattggtaa gacttggcgc gtaggagagt ttgtaagtaa taatggcgta
     4741 aagattaaag cctttggcag tggtaaaaga ctgcgtgggg ttagatatgg ggttaaaaga
     4801 cctgatttag ttattttaga tgatttagaa aatgatacaa atgtcagaag taaagatcaa
     4861 agggataaat tagaagattg ggtggatgaa gcggttttaa acttagggag tgcggatgga
     4921 agcttagatg tgctttatat tggaaccatt ttacataatg atagtgtttt atctagaaaa
     4981 ttaaagcttg gtttttggaa tcctaaagtc ttccgttcca tcgaagagtt tccacaaagg
     5041 cttgatttat gggatgaata cgccatgctt tatagaaatg ctgattttaa taccgctcat
     5101 caattttatt taaaaaataa agttttaatg gataaagggg caaaagttct ttggaaagaa
     5161 gccaaaagct tagaagattt aatgaagtta agggctgaaa atctaaaagc ttttaataaa
     5221 gagcaactca ataatccaag aagtgaaaat caaatcttta gccttgatgg cattaatttt
     5281 tatgatgatt tacctgccat taatcagtat tatatgtata ttgacccagc aggagaaaaa
     5341 gcaaaaagtg actttactgc gattaccatt attggcaaag gtgcaaaggg tttttatgta
     5401 gcagaaagca tcgtaaaaat cttaaaagca caaagcatta taaaaaccat ttttaatctt
     5461 caaaagattt ataaatgtcg cttgattgaa attgaaacta atggcggtca atttttcttg
     5521 aaaaaatggt tacaagaaaa aagcttagaa agtggagttt ttttgccttt gcgtggtaaa
     5581 aataatagcg ttagcaagtt tgaacgcatt gagagtttaa gccttgcttt tgaaaatgaa
     5641 gagctttttt tacataaaag ccaaactatg cttataaatc aacttttaga atttccagaa
     5701 gggaaaaatg atgatgcacc tgatagctta gcaggagcat ttttattagc aagaactaaa
     5761 agtagcatta aaagaagaaa gcatcatttt aactctgttt caagaataag gcgtttttaa
     5821 aggaaaaata tgaaaaaaga aatcaaatcc aaaagagaag tgatattaaa aaacaatagt
     5881 cttataaaca ctcttataaa ctcaagctat ttaaatgtgc ttaaaatcag cgagaacgat
     5941 caaaaaatga tttttaaaga tctaagcttt actcaagctc atcaatcacg aaggagtgtg
     6001 attttagcaa aagagcttca aatcgtttgt gaaaacgaaa aaataaaaga aagctttgag
     6061 tatcttttca atcctgattt attaagtcaa atcttagaaa cctatcttta tgggcttaat
     6121 gtatttgaag ttaattacaa gttaaaagat ggtttttact atccaatctt aaaacaaaga
     6181 gattttagaa attttggctt taatgaaaat gatgagttag tttataatgg caatggttgc
     6241 gaagaaattg tggaagataa aaaagcaatt tatggacttt ttggctctaa ttttttattt
     6301 aaaaatggcg atgccttatt aacaaagctt tattttccag taaagcttaa aaatgcaagt
     6361 ttaaagtttt ggatggagtt tttagaaaga tttggttctc cttgggcagt tgcaaaaaca
     6421 gatagcgatc ctgatgcact agcttctgaa attcatcaaa tgttaaatgg cgatagtgcg
     6481 gtcattgata aagaagaaga gcttgattta atccagccaa aggctaaggc aaattataat
     6541 gaaataatag attacttaga taatcaaata agaagcgtgg ttttaggagc taattt
//
LOCUS       DARGBD010000091         6412 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.091, whole genome shotgun sequence.
ACCESSION   DARGBD010000091 DARGBD010000000
VERSION     DARGBD010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6412
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.091"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..349)
                     /locus_tag="SFZ04_001486"
     CDS             complement(<1..349)
                     /locus_tag="SFZ04_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065734.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCL"
     gene            complement(349..774)
                     /locus_tag="SFZ04_001487"
     CDS             complement(349..774)
                     /locus_tag="SFZ04_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG8065735.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(774..1355)
                     /locus_tag="SFZ04_001488"
     CDS             complement(774..1355)
                     /locus_tag="SFZ04_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEG8065736.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(1352..2095)
                     /locus_tag="SFZ04_001489"
     CDS             complement(1352..2095)
                     /locus_tag="SFZ04_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEG8065737.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLTKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(2098..3060)
                     /gene="moaA"
                     /locus_tag="SFZ04_001490"
     CDS             complement(2098..3060)
                     /gene="moaA"
                     /locus_tag="SFZ04_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEG8065738.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMINDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDILDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(3073..3588)
                     /locus_tag="SFZ04_001491"
     CDS             complement(3073..3588)
                     /locus_tag="SFZ04_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065739.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(3585..4082)
                     /locus_tag="SFZ04_001492"
     CDS             complement(3585..4082)
                     /locus_tag="SFZ04_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065740.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(4073..4957)
                     /locus_tag="SFZ04_001493"
     CDS             complement(4073..4957)
                     /locus_tag="SFZ04_001493"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HEG8065741.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            5028..5897
                     /gene="miaA"
                     /locus_tag="SFZ04_001494"
     CDS             5028..5897
                     /gene="miaA"
                     /locus_tag="SFZ04_001494"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEG8065742.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(5883..6404)
                     /locus_tag="SFZ04_001495"
     CDS             complement(5883..6404)
                     /locus_tag="SFZ04_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump"
                     /protein_id="HEG8065743.1"
                     /translation="MDAFAVSLCKGFSVKKLHLKHYLIVGIYFGGFQALMPTIGYFIG
                     ITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFGFKTMLALAIATSID
                     ALAVGVSFAFLNINLLLAIFLIGIITFILCIIALKIGNKFGIYLKNKAELLGGLVLII
                     LGVKILIEHLFFD"
BASE COUNT         2299 a          974 c          802 g         2337 t
ORIGIN      
        1 tcaaacaact aatccatcta aaagtggcat attttctaaa tcttcttgct tttttaaaac
       61 aaacaaagtg aaaaattgct aaggcaaaaa ttaagatcca agaaaaaatc attacccaga
      121 tattgacatt catttgaaat tgtttcattg ctgataacaa acaacctgta aaaataatca
      181 aagctaaaaa taaataataa attggtaaaa ataatcgtat tctgcgaata aaaatgaatt
      241 cggttttaaa atttccttgt gttagtataa gataaaaaag cattaaaaaa ccgctcgcat
      301 aaagactata aagatgtaaa gctaaaaaga attcgtaact ttgatccatt attttccttt
      361 gtttataaaa tcagctaaat tttgaatttg ttcatcactt aaaaaactat ggtttttatc
      421 ttttatcgtt tttatttttt gtataaaaat tttattgctc aaggttttaa tggccgtgct
      481 gtttttaggt tttaattccc ctttttctcc atgacaagtg gcgcattttt gtttatataa
      541 agagttgata atactaggat tgacttcatg ttcatcatct gaactttgtg cttcatcatc
      601 tacaggtaaa ggcaggttgg agtcacttaa ttctgttttt tcatcgtttt gttctatttg
      661 gactacttct tgatctgtat tttgagtctt ggaaatattt ttttcatcat tagaacaggc
      721 agataaaact aataaaaaaa aacttaaggc aattaaaatt ttagcttttt gcattaaatc
      781 tcctttggat ttataaaaat ttcttcattt tttaatttgt tataaaaatc tatatcattc
      841 cattctgctt taatgccatt ggaaaattct atgtcttgaa gtgaaatttt tggcattagc
      901 tcactatagg catcttctct aaaaccttgt gcataacctg ttcttgtttc atgaacaatg
      961 atgctttgta aagtcactcc ttgttctcca tttaccattt ttgtttgttt taataaagca
     1021 tctataagta tgaaaaatac acgacaaaaa ttttcagcac ttacattaac aggcaggcaa
     1081 atccaacgac ttgaatattt tttcatttct tctaaatatt ttgcgtcatc atatttaaaa
     1141 agagtgatag catgatcaaa actatcaata atttggcgta tataggtttt taaaagtcca
     1201 aaatcataga ccattccagc attatctaaa tatttgcttt caagtaaaac ttcaactttg
     1261 taagaatgtc catgaatgct acttttgcaa cgcttagaag aacaaaatct aacaatgtgt
     1321 gcgttttcaa attcaaataa ttttcttata atcatacacc ctctttatcg ttccaaagac
     1381 gaatatgaat tctatcagaa taattataac cattcttaat acaaaattca gcaatttttt
     1441 gagcattttt tgtaaggttt tgctcatttt cacccatagg catacaaaaa atttgatttg
     1501 gagcttcttt tagaatttca ttgatttcta aaaatgaatt atcaagagta ttggcatcta
     1561 aaacaaattt ataaaaacta tcttttgcgt aatttttaaa tgcttttaaa gctttaaaat
     1621 ttaatcgttt atcttttttt atcccactat tttggagttt aacgcttaaa gcaaaaatac
     1681 attctttgta aaaaggatat ctatcaaaat caatttctat gcttccattg ctttcaaagt
     1741 gtatttcgaa tttatttttt aataacattt ggataaattc tataaattca ggattttcat
     1801 aatggattaa tggctctcca cctgtgataa caactatagg atcaaagtct tgttttaatt
     1861 ttatcactct ttttaaaagt tcattagcat ttaaagtttc ataactttct ttaaaatctt
     1921 ttgtgaaaac agctcttatc gtgtcacatc caatgagagt tttatcgttt tttgatattt
     1981 ttacattaaa acctaaacag ttgaaattac aaccagcaaa acgcataaaa atagctaatt
     2041 ttccattata tttaccttct ccttgaatgc ttaagaaact ttcaacaagt tgcaaaatta
     2101 acctccagtt tgataaaaag cacgagatga ggtttcatta tcaacaacac tccatttatt
     2161 tttttctggt ttatttctta atacttcttg taatatttct acagcggctt taatatcacc
     2221 ttttcgaacc gcttctttta tgcttaatgc ttcatcaaaa taaagacaag gtattaacaa
     2281 gccttcagca cttaagcgta tgcgattgca agaatcgcaa aattcatggc tatgaggatc
     2341 tataattcca aattcataat catctgcctt gtaaatactc acaggtgctt tttcatcttt
     2401 ttttataagt tgaatttgat atttttgact caaaatttgt ataatttcat ctctttttaa
     2461 tccttgtaat ttaccataag catgagtatt ttccataaat tctataaagc gaatttgagc
     2521 tttttttgat tttgcaaatt ccaaaagaga tatcagttca tcatcgttta aatttttaag
     2581 agctacagta ttaagtttta ctttcaaatc tagatttaaa gcttcatcaa ttccagataa
     2641 aacactatct aatatatctt tttgcgcaag agtttttgct tttttgtgat ctagggtatc
     2701 aagtgaaata ttaagtcgtt taagtccagc attttttagg tctttagcaa agtcttttag
     2761 taaaaatcca tttgtagtta tagcaaggtc aatatcgctt ttataatcgt taatcatttt
     2821 tataaaaata cttaaatctt ttcttaataa aggttcccca cctgttatac ggattttttc
     2881 aattccttcg tctatagctg ctttaacaaa taaaaaaagt tcttcgaagc ttaataaatt
     2941 ttcttttggc tgataatcga aaggaatttt tggcatacaa taaaggcagc gaaagttaca
     3001 tctttgtgta actgaaattc taagataatt tatctttcta ccgaattgat ctataagcat
     3061 ttattttcca ttctatttta ttaatttctt aaattttaag acaagttcta catttccagt
     3121 gccaatgcgt aaatctttag cgatttgttc tatgcttttt ccttctttga aaagattttc
     3181 tattttttgt tcttctgtat cgtaatttgg tgtaagttta gccatgcttt gtgctttttg
     3241 ttccaaattt aaaagacgat tttgttgttc attttgaaaa tcttctatga tatgttccat
     3301 agtttttagt gttcttaaaa caggagtgat ttttgaactg atttgtttat caagttcaat
     3361 cataatttct tcttttaaaa gagaggtttt atagtcttca tcctcttcgc tatcatcttt
     3421 aactcctaat tctttacgaa aataatgaag ttctttggta atatcttcta tcacattttg
     3481 aagttttgct atttttgcat tattttctct ttctttgata ttcatgtagg ctagcattgc
     3541 aattaaaagc acaattataa aaactaaata aagtacatca tcactcattc ttggcctttc
     3601 ttatttctta tcatatttct ttggatttca acaacaaaag catcaaaagc cattttgtct
     3661 tcaggcttaa ttttgataat ttttgccaat gtttgacttt gagctttgat aaaaatagct
     3721 attttttgat tatttaaatc aaatcttaaa taatattctt tatcttcttc taaaatagta
     3781 tccaaaaaat ttagatactc aaaatttaaa gattctatta cccctttttg cttaagtggt
     3841 ataagttctt tatttttatc taaagaattt tcaagcctta aaatatcttc ttttagactt
     3901 aaaagaagat caaaaataat tttttcaccc tcgtcaaaat caatgcgtaa agcaagtttt
     3961 ttccatttta aaatttgaga aattgctcca agttttaggt attctccaag aaaacggtta
     4021 ttttctattt cacaacattc taaatgagct tcaaatcctg ctttaaaaag tgctaattcc
     4081 ataataaatc aatccaaata aaaataaaaa agataatact taaataacca tttagagtaa
     4141 aaaatgctct atcaatatga gcaaaattct tgtgaacaat tttatgttcc aaggctaaaa
     4201 taataccgct tataattacc ccaataagtg ctatttttcc aagtgctaca ccccaaactt
     4261 cccacacaaa aagaagccaa aataataccg ctaaaatatg gcaaaaagct gatataaata
     4321 aagtagcctt tgaaccaaat ttagcaggaa tagagtgaag tcctattttt ttatcatact
     4381 ccatatcttg taaagaataa agcagatcaa acccagctgt ccaaaaagtt acacctaaac
     4441 ataaaataac gctataaatg tgaatttcac ccataattat aacacttcct gcaataggcg
     4501 caagtcctaa acaaaatcct aaaactaaat gtgctaaaga actaaagcgc ttaaaagctg
     4561 aataaatagc caataccaaa agcacaggaa aagacaaata aaaggccaaa gtattaataa
     4621 aataagaaca tgatataaaa ataagtgcat taataatgat aaaaatccat acgctttttc
     4681 tacctatttt tccactgaca ttagggcgat ttgcacaacg aggattatcc ttatctatat
     4741 cttcatccat taaacgattt gtagccatgg caaaatttct tgcacttacc gcacaaataa
     4801 tgcctaaaat caacgcctta aaaccaaacc aagcagtgtc atttgcaagt tttgatgcta
     4861 caatcataga ggaaaataaa aaaggcaaag caaaaataga atgcttaaat actacaagtt
     4921 ctaaaatatc tttaaatttt atccagaatg tgttcatttt tctactttaa aatatttttt
     4981 gctatgattt tactaaaatt tttataaatt ttaggataaa tattaaaatg ttttttgaaa
     5041 tagcattaat aggaacaacc gcgagtggaa aaacatacat agccaatact ttagcaagag
     5101 aatttaatgc tgttgtttta agtcttgata gtctttgtgt ttataaagag attaatatag
     5161 caagtgccaa gccttcacaa gatgatcttg cgagtataaa atactttggg gtaaatttat
     5221 tgagtgtgaa tgaacatttt aatgttgagt tattcataag agaatatcaa aaagcaaaag
     5281 aatttgcttt agctagaaat ttacctctaa ttatagtagg tggaactgga ttttatttaa
     5341 aaactatgat agatggttta agtgaaaaaa ccttagagtc aaagagttct ttaaataacg
     5401 atgaaattta tgctctttta ttaaatattg atccaaacta taaaatagaa aaaaatgata
     5461 cttatagatt aaaaaaatgg ctgggtattt atgaacaaac aagagaaatt cctagtgaat
     5521 ttttaaaaag aacacaaaaa actggggtgc ttaaagatat agaaatttat gagcttgcgt
     5581 gggataaaga aattttaaaa aaacgtatta aaactagaac aaaagaaatg cttgataatg
     5641 gacttttaga tgaagcaaaa attctttttt ctaaatttga tcataaactt aaagcattaa
     5701 attctatagg tttgaaagag tgtaaagaat atttagatgg agaaatttcc tttaaagagc
     5761 ttgaaaattt aatcacgata catactacac aacttgccaa aagacaaaga acttttaata
     5821 aaaaatttca aagtaaagcc ttggaatttg ataaagcttt agctacttta agaatgaaat
     5881 tttcaatcga aaaataaatg ttctattaga atttttactc ctagtataat taaaaccaat
     5941 ccgcctaaaa gttcagcttt atttttaaga taaattccaa atttattccc tatttttaga
     6001 gcaatgatac ataaaatgaa ggtgataata cctattaaaa atatagctaa taataaattt
     6061 atatttaaaa atgcaaaact cacaccaact gctagtgcat cgatactcgt agcaattgct
     6121 aaagctagca tggttttaaa gccaaattga ttggcattac tatcgcaatt ttcattttcc
     6181 aatgactctt tgatcatttt taatcctatt aaagaaagta aaataaaagc tatccaatga
     6241 tcaatactcg caataaaaga tgcaaaagtt atgcctataa aataaccaat agttggcatc
     6301 aaagcttgaa atccaccaaa ataaattcca acaataagat aatgttttaa atgtagtttt
     6361 ttaacactaa aacctttgca tagtgataca gcaaaagcat ccattcctaa ag
//
LOCUS       DARGBD010000092         6218 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.092, whole genome shotgun sequence.
ACCESSION   DARGBD010000092 DARGBD010000000
VERSION     DARGBD010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6218
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.092"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1052
                     /locus_tag="SFZ04_001496"
     CDS             <1..1052
                     /locus_tag="SFZ04_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEG8065744.1"
                     /translation="KVDIIYQEKRCTSYNISYEIKKLKKRRAKNKSLWLFADMPFRAD
                     DNAEHLYRYVMKNYPEKNIAFVLRKNSHDYKRLKKEGFKLVDPKSFKFKYLVFKADKL
                     ISSHIERYFFEALGENTLKTKDFVFLQHGITQNDLSSWLNQRKIDLFITGMQDEYDSI
                     AGDFNRYKFTPKEVKLTGFPRWDALLKNNKIKTKQILIMPTWREYIVGSYSKKLMKRR
                     FNPKFYESEYFYRWDSFLHSKKLQELHEKYNYKIVFSPHPQIRPYLEGFNLPNYIIIP
                     SVEMSMQKLFCESSLMITDYSSVAFEMAVLKKPVIYYQFDKDEFFAKHTVQKKYFDYK
                     KDKFGKVFTNKVNIC"
     gene            1093..2544
                     /locus_tag="SFZ04_001497"
     CDS             1093..2544
                     /locus_tag="SFZ04_001497"
                     /inference="COORDINATES: protein motif:HMM:NF013652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HEG8065745.1"
                     /translation="MFHIVFGCNESYVKYLSVLITSIMKNINSQKTFLDVYKEANILP
                     KIDINSLESREGFIFHILIDSIQEKTSIKLDQMIKHLSRENDYPAEIKLHIMDAELFK
                     EMDVPIWVKHYATYFRLYLGSILPENCEKCLYLDVDMLVFSDLRELFCLDLQDYIIAA
                     SPDIKQWPGSLFVGKSKKDNVRDLIIEKGPLYFNAGFMLINLKQWRLESLEKRMVNVA
                     NSYTFEVGDQDILNYVINKKVIILPCKWNFIAGHFILDRKGIFNDFKGEGNQPYWYYT
                     REEMKKNLQNLSILHYTHYVVKPWESYYTEFDVNYYPVHYDYYDEWWYVAFNTPFFNK
                     ELIKLNKMIKNKELENYSKTLAFVLNYKMGNIASIRIRNHLAYKIGNLILDTKQFNKI
                     LKFPFLFISMVFRHYMNNIISKILFNAIPYLKPLPLVFCIDYIEALKIKKHLSYRYGK
                     IVLYCFKYWYKGKIFAIPYLLLKEYKEFKKNKK"
     gene            complement(2554..3906)
                     /locus_tag="SFZ04_001498"
     CDS             complement(2554..3906)
                     /locus_tag="SFZ04_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEG8065746.1"
                     /translation="MHNLNFSHPFLNKLIAYKDLNCLVYKDKTYSYLELLLEVEKYIG
                     QLNNLKGIIGILGDYNLKSIALLLACIEKRLIVAPFLKLKNQDFKELEDKIYEGQIDY
                     LYDEGRFIPYQSKQLKHNLIYTLQNHSSSGLILFSSGSTGKPKAMVHNLDVILNVYQG
                     KKPKVMNIVLFLMFDHIGGLNTLFNVLGMGACGIALEDRKNIEALAQNIQKYQVSLLP
                     ASPSLLNLILMSGVKEKYDLNSLKLITYGTEKMSDSLLNRLKLEFPKVRFHQTFGTSE
                     VGIAQTKTKDNMIKLEGMAYKIINNELYLKSKTQSLGYLNADNSVFDEEGYFATGDLV
                     ELYKENGEEYIKIIGRSKELINVGGEKVVPQEVEGVILELDYIQDCLVYAKANTITGQ
                     SVCVEVLLKPNIEFTNLELKKQLRMYCKDKLANYKIPTQVEIVDGLELSQRFKKVRKG
                     "
     gene            complement(3899..4630)
                     /locus_tag="SFZ04_001499"
     CDS             complement(3899..4630)
                     /locus_tag="SFZ04_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEG8065747.1"
                     /translation="MQKVILITGTRKGIGKQLSEHYLSLGHTVCGCSRGASSINHINY
                     RHFELDVSDEEKVVSMVRAVRKEFSRIDVLLNNAGIASMNHILTTPYKSVNNIFNTNV
                     FGTFLFTREVAKVMGNIYKKNYKNTKTMPFRIVNFTTVATPLRLEGEAIYAASKAALV
                     NLTQVCAKELSEFGITVNAVGPTPVPTDLIKNVPQNKLDVLLNQQAIKRFGEFEDVLN
                     VIEFFLNEKSGFITSQVVYLGGVNA"
     gene            complement(4632..4925)
                     /locus_tag="SFZ04_001500"
     CDS             complement(4632..4925)
                     /locus_tag="SFZ04_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065748.1"
                     /translation="MEEKIISIILNVLKNSADDYEIEELKSANKDTKLYSGLGGLLDS
                     LALVSLITDLEESLATELNIEITLADEKMMSLRNSPFKDVQTLAQYIASQIKA"
     gene            5051..>6218
                     /locus_tag="SFZ04_001501"
     CDS             5051..>6218
                     /locus_tag="SFZ04_001501"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065749.1"
                     /translation="MNKNIVLLGASNSRIPGGLQAGLNQKNINLYNLSIGGTDSIHKI
                     YELKRKENKDLIQNADLIILEVNLMDVTMSFCYKNLDFKIIKYINYLYEQLYLLKKKI
                     LVLLLFDLRCINDNKNKSANFITKIHKQLSLFYDFNLIDLHQKMIDTKCFKFYTASLD
                     PYHLLATIMYQLGKNISENLNYFKFSERKLIFETNAIFKVLSPSDLISNPCLKAYKDL
                     IYNDKYVEILDKDLISFPKPYIGYKILGVHTFLPTKKGVLSSYQSMCENYFSMVFKNS
                     KKEIVKSFRCYNNFDWLYDDFVIDSDTIVMYNKDNLPITEISYETTIINNLSNTSDKA
                     SIVNFLLVKDDPNFIQIKNNFSQYKYTKDFSYLIPPIEMYRDIIEEYTLKTSKLI"
BASE COUNT         2305 a          794 c          801 g         2318 t
ORIGIN      
        1 aaaaggttga tataatctat caagaaaaaa gatgtacttc ttataatatt tcttatgaga
       61 ttaaaaaatt aaaaaaaaga agggctaaga ataaatcatt atggcttttt gctgatatgc
      121 cttttagagc cgatgataat gctgaacatt tatatcgcta tgttatgaaa aattatcctg
      181 agaaaaatat cgcctttgtc cttagaaaaa attctcatga ttataaaaga ctaaaaaaag
      241 aaggttttaa actggttgat ccaaaaagtt ttaaatttaa atatttggtt tttaaggctg
      301 ataaactcat ttcatcgcat attgagaggt atttttttga agccttgggg gaaaatactt
      361 taaaaactaa agattttgta tttttgcaac atggaattac tcagaatgat ttatcttctt
      421 ggttgaatca aagaaaaatt gatttattta ttactggaat gcaagatgaa tatgattcta
      481 tagcaggaga ttttaatcgt tataaattta ctcctaaaga ggtaaaatta acgggatttc
      541 ctagatggga tgctttgctt aaaaataata aaataaagac taaacaaatt cttattatgc
      601 ctacttggag agaatatata gtaggttctt atagtaaaaa attaatgaaa agaagattta
      661 atccaaaatt ttatgaaagt gagtattttt atagatggga ttctttttta cacagtaaaa
      721 aattacaaga attacatgaa aaatataatt acaaaatagt ttttagtcct catccacaaa
      781 ttagacctta tttggaaggt tttaatttac caaattatat tataatacct tctgttgaaa
      841 tgagtatgca aaagcttttt tgtgaatcat ctttaatgat aacggattat tcaagtgtgg
      901 cttttgagat ggctgtttta aaaaagcccg tgatttatta tcaatttgat aaagatgaat
      961 tttttgcaaa gcatactgtg caaaaaaaat attttgatta taagaaagat aagtttggga
     1021 aagtttttac taataaggtt aatatttgtt aatttttaga gttttaaata tataaattgt
     1081 gagggtttat ttatgtttca tattgttttt ggttgtaatg aatcttatgt gaaatatttg
     1141 tcagttttaa ttacaagtat catgaaaaat attaatagtc aaaaaacttt tcttgatgtt
     1201 tataaagaag ctaatatatt gccaaagatt gatataaatt ctctcgagtc aagagaaggg
     1261 tttatatttc atattttaat tgattctata caagaaaaaa cttctataaa gcttgatcaa
     1321 atgattaaac atttaagtag agaaaatgat tatcctgcgg aaattaaatt acacataatg
     1381 gatgctgagt tgtttaaaga gatggatgtt cctatttggg taaagcatta tgctacctat
     1441 tttaggttat atttagggag tattttgcct gaaaattgtg aaaaatgttt gtacttagat
     1501 gtagatatgc ttgttttttc tgatttgaga gaattatttt gtttggattt acaagattat
     1561 attattgcag catctccaga tataaaacaa tggccaggaa gtttatttgt agggaaatca
     1621 aaaaaagata atgttagaga tttgattatt gaaaaaggtc ctctttattt taatgctggt
     1681 tttatgttaa tcaatttaaa acagtggaga ttagaatctt tagaaaaaag aatggtaaat
     1741 gttgcaaatt catacacatt tgaagttgga gatcaggata ttttaaatta tgttattaat
     1801 aaaaaagtaa taatacttcc ttgtaaatgg aattttatag ctggtcattt tattttagat
     1861 agaaaaggta tttttaatga ttttaaagga gaaggaaatc agccatattg gtattataca
     1921 agagaagaaa tgaaaaaaaa tttacaaaat ttatctattc ttcattatac tcattatgtt
     1981 gtaaagcctt gggagagcta ttatacggaa tttgatgtaa attactatcc ggtacattat
     2041 gattactatg atgaatggtg gtatgttgct tttaatactc ctttttttaa taaagagcta
     2101 attaaattaa ataaaatgat taaaaataaa gagcttgaaa attattccaa aacattagct
     2161 tttgtattaa attataagat gggaaatata gcttcaatta ggattcgaaa tcacttggct
     2221 tataaaattg gaaatttaat attggatact aaacaattta ataaaatatt aaaatttcca
     2281 tttctattta tatcaatggt atttcgtcat tatatgaata atataatttc aaaaatatta
     2341 tttaatgcaa ttccttattt aaaacccttg cctttagttt tttgcataga ttatatcgaa
     2401 gcactaaaaa ttaaaaagca tttatcatat agatatggta agattgtgct ctattgtttt
     2461 aaatattggt ataaaggtaa aatatttgct attccttatc ttttgttaaa agaatataaa
     2521 gaatttaaaa aaaataaaaa ataatcttac attttaaccc ttcctcacct tcttaaacct
     2581 ttggcttaat tctaatccat ctacaatctc aacttgagtt gggattttat aattagccaa
     2641 tttatcttta caatacattc ttaattgttt tttgagttca aggtttgtaa attctatatt
     2701 tggttttaaa agcacctcta cacaaacact ttgtcctgta atagtattag cttttgcata
     2761 cactaagcaa tcttgtatat agtcaagttc taaaatcacc ccttcaactt cttgagggac
     2821 aactttctct cctcctacat ttataagctc tttgcttctt cctatgattt ttatatattc
     2881 ttctccattt tctttataaa gctcaactaa atctcctgtt gcaaaatatc cctcttcatc
     2941 aaatacacta ttatcagcat ttaaataacc taagctttgg gttttacttt ttaagtaaag
     3001 ctcattatta ataatcttat aagccatacc ttctaattta atcatattat ctttagtttt
     3061 agtttgagct ataccaactt cacttgtgcc aaatgtttga tgaaatctaa ctttaggaaa
     3121 ttccaatttt aagcgattaa gtaaagaatc actcattttt tctgtcccat atgtaataag
     3181 ttttaaagaa tttaaatcat acttttcttt tactccactc attagtataa gatttagtaa
     3241 acttggactt gcaggcagta aagaaacttg gtatttttgt atattttgcg ctaaagcttc
     3301 aatattcttt ctgtcttcta aagctatacc acaagcaccc atacctaaaa cattaaataa
     3361 agtatttaaa ccaccaatat gatcaaacat taaaaacaaa acaatattca taaccttagg
     3421 ttttttacct tgataaacat ttaaaataac atcaagatta tgaaccatag ctttaggttt
     3481 tccagtgctt ccacttgaaa aaagaatcaa accactagat gaatgatttt gaagagtata
     3541 gataagatta tgttttaact gcttactttg ataaggtata aacctacctt catcataaag
     3601 ataatctatt tgcccctcat agattttatc ttctaattct ttaaaatctt gattttttaa
     3661 ttttaaaaaa ggagcaacaa ttaatctttt ttctatacaa gctaacaata aagctatact
     3721 ttttaagttg taatctccta aaattccaat aatgcctttt aaattattta attgaccaat
     3781 atatttctca acttctagta aaagttccaa ataagaataa gttttatctt tataaactaa
     3841 acaatttaaa tctttataag ctataagttt gtttaaaaaa ggatgagaaa aatttaaatt
     3901 atgcattaac tccacccaaa taaactactt gcgaggttat aaaaccactt ttttcattaa
     3961 gaaaaaactc aatgacattt aacacatctt caaattcccc aaagcgttta atggcttgct
     4021 gatttaataa aacatcgagt ttattttgag gaacattttt aattaaatcc gttggaacag
     4081 gtgtaggacc aacagcattt acagtaatac caaattcact taattcttta gcgcacactt
     4141 gagttaaatt aactaaagca gctttagatg ctgcatatat ggcttcacct tcgagtctta
     4201 aaggagtggc aacagtagta aaattaacta tacgaaaagg catggttttt gtgtttttat
     4261 aatttttttt ataaatattg cccataactt tagcaacttc tcttgtaaat aaaaaagtac
     4321 caaaaacatt ggtattgaaa atattattaa cgcttttata aggcgtggtt aaaatatgat
     4381 tcatagaagc aatgcctgca ttatttaaca atacatctat acgagaaaat tctttacgca
     4441 cagcacgaac catagaaact actttttctt catcgcttac atcaagctca aaatgtctat
     4501 aatttatatg atttatactt gaagcacctc tagaacatcc acaaactgta tgacctaaag
     4561 aaagataatg ctcgcttaat tgtttaccta taccttttct tgttcctgtt ataagaatga
     4621 ctttttgcat tctatgcctt aatttgactt gctatatatt gagctagtgt ttgaacatct
     4681 ttaaaaggag agtttctcaa actcatcatt ttttcatctg caagagttat ttctatatta
     4741 agttctgtag ctaaactttc ctctaaatct gtaattaagc taacaagagc taaagagtct
     4801 aaaagacctc ctaatccgct ataaagttta gtatccttat tggctgattt taattcttct
     4861 atttcataat catcagctga attttttaaa acatttaaaa ttatagaaat tattttttct
     4921 tccataaaaa ttttctcctt gatatcaaag ataatttcta tattatagat ctatttataa
     4981 aattatcctt gtatattttt aagtattata ttatataatt attaataagt ttaattgtgg
     5041 aaataaaatt atgaataaaa atatagtatt attaggagct agcaattcaa gaattcctgg
     5101 tggacttcaa gctggcttaa atcaaaaaaa tattaacttg tataatctat ctataggtgg
     5161 gacagattct atacataaaa tttatgaact taaaaggaaa gaaaataaag atttgattca
     5221 aaatgctgat ttgattatac ttgaagtaaa tctaatggat gtaacgatga gtttttgtta
     5281 caaaaatctt gattttaaga taattaaata tatcaattat ctttatgagc aattatactt
     5341 attaaaaaag aaaattttag ttttattact ttttgactta agatgcataa acgataataa
     5401 aaacaaaagt gctaatttta ttacaaaaat tcataaacaa ttaagtttat tttatgattt
     5461 taatctgatt gatttgcatc aaaaaatgat tgatacaaaa tgttttaagt tttataccgc
     5521 atccctagat ccctaccatc tcctagctac tataatgtac caacttggaa aaaatatttc
     5581 tgaaaactta aattatttta aattttcaga aaggaaatta atttttgaga caaatgcaat
     5641 ttttaaagtt cttagtccat ctgatttaat atctaatcct tgccttaaag catataaaga
     5701 tctaatttac aatgataaat atgttgaaat tttagataaa gatttaattt cttttccaaa
     5761 accatatata ggctataaaa ttttaggagt acatactttt cttccaacta aaaaaggagt
     5821 attatcttct tatcaatcaa tgtgtgaaaa ctactttagc atggttttta aaaattcaaa
     5881 aaaagaaata gtaaaaagtt ttagatgtta caacaatttt gattggctat atgatgattt
     5941 tgtaatcgat agtgatacta tcgttatgta taataaagac aatctgccta taacagaaat
     6001 ttcttatgag acaactataa ttaataatct atccaataca tcagataaag catctatagt
     6061 caatttttta cttgttaaag atgatccgaa tttcattcaa ataaaaaata atttttcgca
     6121 atataaatat acaaaagatt tttcatattt aattccacct atcgaaatgt atagagatat
     6181 tatagaagaa tatacactaa aaacaagtaa attaattg
//
LOCUS       DARGBD010000093         6142 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.093, whole genome shotgun sequence.
ACCESSION   DARGBD010000093 DARGBD010000000
VERSION     DARGBD010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6142
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.093"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(243..2232)
                     /locus_tag="SFZ04_001502"
                     /pseudo
     CDS             complement(243..2232)
                     /locus_tag="SFZ04_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853402.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2660..3034
                     /locus_tag="SFZ04_001503"
     CDS             2660..3034
                     /locus_tag="SFZ04_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG8065750.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERVRSEIFFNKKVDIFDAS
                     KGHFLLTKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILFFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(3026..4216)
                     /locus_tag="SFZ04_001504"
     CDS             complement(3026..4216)
                     /locus_tag="SFZ04_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065751.1"
                     /translation="MKKIFLIFFLSCFLLNAKEQKLVDVKPVENFYPKLSVQECNTNC
                     LFDLLESRLYLSFLSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGF
                     TLKGANELKNYSGNMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAI
                     FSDGSALSSNLNSRILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNAPLIKT
                     ALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNE
                     IFNQSIDYNWIAYATSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASF
                     EELK"
     gene            complement(4213..4821)
                     /locus_tag="SFZ04_001505"
     CDS             complement(4213..4821)
                     /locus_tag="SFZ04_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEG8065752.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFGLMEPKIKNAKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWSELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEKNPSYEKNFIQDLKKIKGFL"
     gene            complement(4818..5297)
                     /locus_tag="SFZ04_001506"
     CDS             complement(4818..5297)
                     /locus_tag="SFZ04_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8065753.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIRENFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            5428..5562
                     /gene="rpmH"
                     /locus_tag="SFZ04_001507"
     CDS             5428..5562
                     /gene="rpmH"
                     /locus_tag="SFZ04_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEG8065754.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            5559..5885
                     /gene="rnpA"
                     /locus_tag="SFZ04_001508"
     CDS             5559..5885
                     /gene="rnpA"
                     /locus_tag="SFZ04_001508"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEG8065755.1"
                     /translation="MKNFDKFSTNEEFSSVYKIGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            5882..>6142
                     /gene="yidD"
                     /locus_tag="SFZ04_001509"
     CDS             5882..>6142
                     /gene="yidD"
                     /locus_tag="SFZ04_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEG8065756.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRVLRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAKK"
BASE COUNT         2115 a          800 c          897 g         2330 t
ORIGIN      
        1 tcttgagata ttcttacttc ataagaaagt ttttgtaaat tcatcttttt taatttatct
       61 atagaactta gtttaaaatc ttctttgttt ttttgcattt tttcaataaa gctttgaagt
      121 tcttcttgat ttaaagtatt agagttttca tctataaaac cttgctcact ttgtaagatt
      181 aagatttctt tatttttaat ataggggtat tactctttga gggtgtaaag agctaatact
      241 ccttagctag aaatattaat aggagcatcg tatgacttca aaaaggggag ttgtgttgat
      301 tttattggat acaataagat aataatgctc aaagttatta ataattctag cttcaacttt
      361 agtatttaaa atcagtctat tgtttttact taaactgata tctgaaggag ctatagcatt
      421 agaagtacta taattatctt cataatgtac taaggctcct gctaatatat ctatgaaagt
      481 gtttttaaat atatttaaat tcccgcctat ataaggtatt attataagat ttagcttcac
      541 ttaaacctgt aatggccgaa ggagctataa aaacagaatt gttattttta tactcatcaa
      601 gattgagatt gtttatgatt aaggtattat catggccatt gtttgaaagt ccagctataa
      661 tacttaaaat tccttctctt ttatctgaag ctacaccaaa taaagtatca ttgataatga
      721 ttttattata agcagcttca ttataagcca taatcaaata agcattatca gctgcattag
      781 aagaatagtt ttttatatct atggtattat gattggcttt atctaaagct cttatgatga
      841 ttttagaacc tttatctgta ttacttgtat cagtaatgct ttgaacattg ttataattta
      901 tagtattata agaagcttct ttggcttctg ttaatacagt tagatttcta aaagaagcaa
      961 aatctttaat cgatacttta ttgttattag cactactagg ataaaagtct tgattattaa
     1021 gaaggttttt cttagctgta taaatgtata caggtaaggt tgacatagaa ttattaatat
     1081 aaactttatt ataatccgca ctgccttcta aggttctagc agctataata tttaaagcat
     1141 ctttatagct ttgagaaaga tcggttgtgg taagatcgtt tttaatgtta atggtattat
     1201 gattaactcc tttagttgca aagtcaccat aaaaagaatg ttggttataa cctaagaagt
     1261 tattagcgat ttctaaagga tgttttaatt ctatgtttaa ggtattataa tttacttctc
     1321 cattattata agctcctgcg tagaagttaa acaaagcttg agcaaaaatg ttcccattgt
     1381 ttttattttt ttaggttttt aatatctttt aatattgata gtattatcta aggcttgtcc
     1441 ttgttcggtt tttccaccca aaaaatcagc aaataaaaca gaattataag ctaagggttg
     1501 tttatcatgg ttcatataca tatcaagatt aaaactatct atgtctaaaa ggtttttact
     1561 ggcttgaaag tttttatctg attcgctatc tatataacct gcgctaatat gagcagcagc
     1621 taaactagca taagctttgc ttggaccatg gataatcata ttagcatctt tgataaagat
     1681 tttattgttt tttacattac cttgataagc taaaccacct acaaggtgag tgattctttc
     1741 atcaaaggta ttattaccat ttttatcttt tttaggcaag aaagtaaaaa actctacact
     1801 gctacctgct tttatattta aactattatt tgtagaatct ccataagtgg ttatagctcc
     1861 gattaaataa ggagaaccat ttaaggctaa atcataagtg ttctcaactc ccatactaat
     1921 atgggcatct ttttgaagta tggtttggtt atagcttgca ttactataat gagtaaaggt
     1981 agaactcatt aagaaattca tgcgttgatt gcttttagaa ttactagggt ttttatatga
     2041 gtatctttag gtttaagata aaaaaccgaa ctaagttctc cttgttctaa tataagtttg
     2101 ttataacttg catcagcatg atcggttttt gctgtgatta aaaaaggaag cactctaact
     2161 gttttttata ctacgatcgg ctgtattaac accatgcctt gctttaaaag aaagaaattc
     2221 atcttctctc atatcaggag taagtaaata atgtttaaaa tttaaatcgt ttatatttgt
     2281 aatatttggt ttatgattgt taaatattgt taatatattg tttagaactc ttagcataat
     2341 aatttatacc ttggaatttt ttataagtag aattggtttt atcataaagt tcgttatcat
     2401 taaaataatg ctttggaata ttgaaatttc gattgtctgt agtatttgct tgagtggctg
     2461 caaaagcgtt gatgcttaag aaggtaacaa tggaaagttt aaaacaaaat ttctctatac
     2521 cccctcccag tgaagttaaa aagctttatt aaattaagat tggacggaat ttttaatata
     2581 aactaaaaag cgatatcaaa gaatttccgt tgtataatct aatgtttttt aaatgtgaaa
     2641 tattttttaa ggtaaagcga tgaaaatgcg tgtgtattat gaagatactg atgcgggtgg
     2701 agtggtgtat catagtaatt atttaaaatt ttgcgagaga gtaagaagtg aaattttttt
     2761 caataaaaaa gtagatattt ttgatgcgtc taagggacat tttttactta caaaagcaaa
     2821 ttgcaatttc ttaaaacctg caaaacttgg agatatgata gagattaaaa caaaaatttt
     2881 agaagtcaaa aatgcttctg tggaaatttt acaagaaatt tataaagatg aaattttgtt
     2941 ttttaaaatg gaattaactt tagcttttat taaaaacgaa aaaccagcta gaatggatat
     3001 gcagttaaaa aagctctttg aagaattatt ttaattcttc aaagcttgct tgcttacctt
     3061 gcataagacg cactttgtaa tcaacttgag aatttttgat tttctcatca aataaacttt
     3121 cgcttttttt atttaggaat tcggtataaa agtaatcaac tcctatgcta gtagcataag
     3181 caatccagtt ataatctata ctttgattaa aaatttcatt aagatagact aagttatcat
     3241 cgtggttatt gatagaatta gcaatgataa aattttctct atctccttgt tgtgttaaac
     3301 ttaaaaatgt tggattatag ttgatttgag tggataaaag cacataagga tgaatgttat
     3361 aaattcttag ttgagaactt gctagagctg ttttgatcaa tggagcgtta aaaaatattg
     3421 aggcattatt aactccacct tgtgatctta aaagtctgct gaaatcaagc ttctcgcctt
     3481 ctatggtata tattctagca ttattatttt gagcaagaat tcttgaattt agattgcttg
     3541 ataaggcaga gccatcgcta aatattgcga tattagcatt tgatttgctt aaaagtgtgg
     3601 caatttgagc atcatagtca atacttccaa aaataatatt ttgatttgaa atttgtatgt
     3661 tgtttttatg gatagtcggt atgaaaattt tcatatttcc tgagtaattt ttcaactcat
     3721 tagcaccttt taaggtaaat ccagctatgg catactgata tccttgagct tgtgctgcat
     3781 caagcgcggc tcgaatttta tcactatctt ctgtgccggt taaaaaaact tttactttga
     3841 tttcagctct ttgtcttaaa agataggcta tgcttgaatt tattatagta tttgagtagc
     3901 tttttatggt tttttctggg ataattatcg caagtttgac agaagtaatt ttttgaacat
     3961 ttttttcaaa atcagtaatg gaatttaata attttgcata aacattagat aaaaattgat
     4021 cgttttgatc tgcaaattca cttaaaaaac taagatataa tcttgattct aaaagatcaa
     4081 aaagacaatt tgtgttgcat tcttgaacgc ttaatttagg ataaaaattt tcaacgggtt
     4141 ttacatcgac taatttttgc tcttttgcat taagcaaaaa gcaagataag aaaaatatta
     4201 aaaatatttt tttcataaaa atcctttaat tttttttaaa tcttgtataa aatttttttc
     4261 ataacttgga tttttttcta taaaatctaa atcataactt ggcattatga aaaaattttt
     4321 ataagcaaaa acttcacctt ttaaaatgtg ataatcttta aatcccaagc ttttaaatgt
     4381 atattctcct agacaaagca aaaaagcagg ttgaatcagt tttagttcgc tccagaaaaa
     4441 tggtaagcaa gattgtagcg aaaaatcatc aaattttcca ttacaaaaac atttaaataa
     4501 ataagaaaaa taaaaatctt catcgcaaag ccctaaaatt tgataaatat agtgttttaa
     4561 tttttcacct ttttttgaat taagtaaaat tccgctttca ttttcactct tttgcccaaa
     4621 aacatcaaga attagcaatt tggcattttt tatcttaggc tccataagac caaattttct
     4681 tgttttggaa aattggcata aggtgcaaga tgaaacaagt tgttttaatt cttgaaaatt
     4741 ttgtacttgt tcaaagtggt ttgtatgtgt atcaacaaag ttaaatccca tagcttttaa
     4801 ataataaaga cttcttatca taaatcacac aatttttcta aattttctcc acttagacga
     4861 taatttctcc attgtttaag atgtttagcg tttaaacttt cataaaaatt aatacctaaa
     4921 atattatcat ttaagcaaac ccagtcgagt ctttttaaat tttctttttt gcaaatttct
     4981 cctaaaaatt taaacacagc ttttccataa ccttttttac gaaaattttc tcgtatataa
     5041 atatcttcaa gataaattcc accgctgccc caaaaagacg aaaaagtata aaaataaatc
     5101 atatagccta tagttttttc attttctttt aacaaaaaag cacgagcaaa tttatttttt
     5161 agtaaagaat gttccagttt ttctttcgtg cattgaagaa aatctaacat atcttcgtat
     5221 tttgcaaatt ctatgatcat ttcttgtaaa atatctaaat cttcttgtct taaatcaata
     5281 attttaaatt ctgacatttt taacctttta aaaataattt caaaatttat caaaagaatt
     5341 taaaaattac tcttaatcaa aagcaattta taagtaagat taagataaaa tacaagttta
     5401 ttttataatt ttttaaggaa aaatcaaatg aaaagaactt atcagccaca tggcactcca
     5461 agaaaacgta ctcatggttt tcgtgttcgt atgaaaacta aaaatggtcg caaggtgatc
     5521 aatgcaagac gcgctaaagg tagaaaaaga cttgctgtgt gaaaaatttt gataaattta
     5581 gcacaaacga ggaattttca tctgtataca aaataggtaa aaaatggcat tgcgaaggtg
     5641 tgattatttt ttatctgaat agttatgaaa aaaaaatagc agttgttgct agtaaaaaag
     5701 ttggaaaagc agtggttaga aatcgttcaa aacgaatttt aagggctttg tttgctaagt
     5761 ttgaaagata tcttcaagat ggcaaatata tttttgtagc taaaaatgaa atcactgaac
     5821 tttctttttc taggttagaa aaaaatctaa aatggggatt gaaaaaacta gaatgtttca
     5881 aatgatatgc ctaaaaatac tccgttttta tcagaaattc ttaagccctt taaaacccgc
     5941 tgcttgtagg tattatccta gttgttctga gtatgcgctt tggcagtttc aaaaaaagaa
     6001 tttttttcta gctttttttt ctactttttt tagagtttta agatgcaacc ctttttttaa
     6061 agggggtttt gattatccta gagtttctaa aaatttttat cctataaatt tatgttttaa
     6121 gcctatattt ttagcaaaaa aa
//
LOCUS       DARGBD010000094         6058 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.094, whole genome shotgun sequence.
ACCESSION   DARGBD010000094 DARGBD010000000
VERSION     DARGBD010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6058
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.094"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..361
                     /locus_tag="SFZ04_001510"
     CDS             <1..361
                     /locus_tag="SFZ04_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065757.1"
                     /translation="EEAEIEIISPVLKEGKYKWRGIYNGEKIDFSMGDSGFKNAVIRQ
                     EYNFINGTTINCQLEISKTFDDYGEEIKTSYRVKKVYSIQANDISKITKFGQKRRKQK
                     EESLEPTLFDFTKDTKD"
     gene            364..3279
                     /locus_tag="SFZ04_001511"
     CDS             364..3279
                     /locus_tag="SFZ04_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEG8065758.1"
                     /translation="MTNYQEKDLENFIESYLLENHAYIKRTNENYDKNLCLDVELFEN
                     FLQATQSVALEELKKRCGQNYKKELFDRIFSQIKTKGIVKALQGYVEIKGIKIYLAFA
                     KPNTNANEESVKKYEQNSLSIIRQLHYSTQNKNSLDIVIFLNGLPLITIELKNHFTGQ
                     NVFHAIKQYKKDRNPKEAIFNYTIVHFALDHDLCYMSTKLDQDATTFLPFNLGLNNGS
                     GKIGLANGAGNPSSDGIKTAYLWEKIFKKDTLLNLFFNFVQVVKKKNEEIIIFPRYHQ
                     FDVVEKLLAHAKENGTGQRYLIQHSAGSGKSNSISWLAHNLVSLHRLEKNIFDSIIVV
                     TDRKVLDSQIRENVKSFSQTKNLVEVITHGSKQLKNALEEGKKIIITTIQKFPFILDE
                     IKTLKSKTFAIIIDEAHSSQSGSNAQKMAEAIRDKSGDESQNLDDEILEIIKNKKLQS
                     NASYFAFTATPKPKTLEMFGMPCDVNGEQRFIPFHLYSMKQAIEEGFILDVLKGYTTY
                     KSYYKIISCTNDNPKYDKKRANAKLKAYVQNNIRTIEQKSQIMCEHFFQNSFKKIKGK
                     AKAMIVTSSRENAVKYYLVFREYLRKNYPHFKAIVAFSGEVNLEGEIYSESALNGFAE
                     NVLKDEFKKDEYRFLIVAEKYQTGFDEPLLHTMYVDKALSGVSAVQTLSRLNRTCKNK
                     ENTFVLDFVNTHEDIAKSFSVFYEQTYLSEATDDNRIFDLKANLNEYEIYTQEEIDDF
                     ANAILRKEKENIIHAKLDIMLDRFNQKSDDEKLDFYNKAKTYLKEYSFLAQILPYEDI
                     ELEKLYILLKKLASKIILPKSEDLAKGILDNVDFDSYRLQLDKTQDIVLQGNGELKPS
                     FADGSSKSVEAELEELSNIIKDFNNKYANIDFNESDKIAKILYDIKDDIAKNERIRET
                     FSKSDIQNSRIEFDALLKDKIQDILELNLELFKQFNQNIEFKDKIANTMFNMVCNDF"
     gene            3306..4337
                     /locus_tag="SFZ04_001512"
     CDS             3306..4337
                     /locus_tag="SFZ04_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG8065759.1"
                     /translation="MFVSVDFFKTFDISNNERSKAKKVQGKKYEIFLNENEHSLITPK
                     VSFKEILRYYYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILID
                     PIFNTHASPISFTNKAFKNAPVYNVNDFNEIFAVIITHSHFDHLDAKSVKALKEKARF
                     FITPLKVGNYLKSYGVSEKKIIELDWWSGIEFGDLKIIATPAQHSSSRGDGKNKTLWA
                     SFVMEFLSVDKRVFFSADGGYFTHFKKIGEYFGDFDLACLESGQFNIAWPYSHSFPEQ
                     ILKEAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKF
                     KQDFWWKEE"
     gene            4407..4748
                     /locus_tag="SFZ04_001513"
     CDS             4407..4748
                     /locus_tag="SFZ04_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG8065760.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNVLDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(4771..5937)
                     /locus_tag="SFZ04_001514"
     CDS             complement(4771..5937)
                     /locus_tag="SFZ04_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEG8065761.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSKDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGMDGYFRLSYATSDELIKKGLERIANFIASY"
BASE COUNT         2254 a          839 c         1024 g         1941 t
ORIGIN      
        1 tgaagaagct gaaatagaaa tcatatcacc tgtattaaaa gaaggtaaat ataaatggag
       61 gggtatttat aatggagaaa aaattgattt tagtatgggt gatagtggtt ttaaaaatgc
      121 tgtcattagg caagaatata attttattaa tggaacgact attaattgtc aattggaaat
      181 cagtaaaact tttgatgatt atggagaaga aattaaaaca tcatatagag taaaaaaagt
      241 ttatagtata caagctaatg atatttctaa aattacaaaa tttggccaga aaagaagaaa
      301 acaaaaagaa gaaagtttag aaccaacttt atttgatttc acaaaagata ctaaggacta
      361 acaatgacta actaccaaga aaaagattta gaaaatttca tagagtctta cttgttagaa
      421 aaccatgcct atatcaaaag aacaaatgaa aattacgata aaaatttatg tttagatgta
      481 gagctttttg aaaatttttt acaagctacg caaagtgtag cacttgaaga gcttaaaaag
      541 cgttgcggac aaaactataa aaaagaactt tttgatcgta ttttctcgca gattaaaacc
      601 aaaggcatag ttaaagcctt gcaaggctat gtagagatca aaggcatcaa aatttaccta
      661 gcctttgcca agccaaatac caatgcaaac gaagaaagcg tgaaaaaata cgagcaaaac
      721 agcctttcta tcatacgcca gcttcactat agcacgcaaa ataaaaactc ccttgatata
      781 gtgatctttt taaatggctt gcctcttatc accatagagc ttaaaaacca tttcacagga
      841 caaaatgtct ttcacgctat aaagcagtat aaaaaagaca gaaacccaaa agaagctata
      901 tttaactata cgatagtgca ttttgcgcta gatcatgatc tttgttacat gagtacgaaa
      961 ttagatcaag atgcgactac atttttacct tttaaccttg gtttaaataa tggtagtggc
     1021 aaaataggct tagcaaatgg agcaggtaat ccttcaagtg atggtataaa aacagcttat
     1081 ttgtgggaga aaatctttaa aaaagatact ttgctaaatt tattttttaa ttttgtgcaa
     1141 gttgtaaaaa agaaaaatga agaaatcatc atatttccta gataccatca attcgatgta
     1201 gtagaaaagc tactcgccca tgcaaaagaa aacggcacag ggcaacgcta cttgatccag
     1261 catagtgcag gaagtggcaa gagtaattct atatcttggc ttgcacataa tctcgtaagc
     1321 ttgcatagac ttgaaaaaaa tatctttgat tctatcatcg tagtaaccga tagaaaagtg
     1381 cttgatagtc aaataagaga aaatgtaaaa tccttttcgc agacaaaaaa tttagtagaa
     1441 gttatcactc atggaagcaa acagcttaaa aatgctttag aagaaggtaa gaaaatcatc
     1501 atcacaacca tacaaaaatt tccttttatt ttagatgaaa tcaaaacttt aaaaagcaaa
     1561 acttttgcta tcattatcga tgaagctcat tcaagtcaaa gcggaagcaa tgctcaaaaa
     1621 atggcagaag ccataaggga taaaagcggc gatgaaagtc aaaatttaga tgatgaaatt
     1681 ttagaaatca taaaaaataa aaaactccaa agtaatgctt cttattttgc atttaccgct
     1741 acgcctaagc caaaaacctt agaaatgttt ggtatgcctt gtgatgttaa tggagaacaa
     1801 aggtttatcc cttttcatct ttactcgatg aaacaagcca tagaagaagg atttatactt
     1861 gatgtactaa aaggttatac aacctataaa agttattata aaatcatatc ttgtacaaat
     1921 gataatccaa aatacgataa aaaaagagcc aacgcaaaac taaaagctta tgtgcaaaac
     1981 aatatcagaa caatcgagca aaaatcacaa atcatgtgcg agcatttttt ccaaaacagc
     2041 tttaaaaaga taaaaggtaa agcaaaagct atgatcgtaa caagttcaag agagaatgct
     2101 gtgaagtatt atcttgtttt tagggaatat ttaagaaaaa attatccaca ttttaaagcc
     2161 attgtagctt tttcaggtga agtaaattta gaaggtgaaa tttatagcga aagtgcttta
     2221 aatggttttg cggaaaatgt tttaaaagat gagtttaaaa aagatgagta tcgtttttta
     2281 atcgttgcgg aaaaatacca aaccggattt gatgagccat tattacatac tatgtatgtg
     2341 gataaagcat taagtggggt aagtgcagta caaactctat caagactaaa ccgaacttgc
     2401 aaaaacaaag aaaacacttt tgtgctagat tttgtaaata ctcatgaaga tatagcaaaa
     2461 tcttttagtg tgttttatga gcaaacttat ttaagtgaag ccacagatga taatagaatt
     2521 tttgatttaa aggcaaatct aaatgagtat gaaatttata cccaagaaga aatagatgat
     2581 tttgcaaatg ctattttaag aaaagaaaaa gaaaatatca ttcatgcaaa attggacata
     2641 atgctagata gatttaatca aaaaagtgat gatgaaaaat tagattttta taataaagca
     2701 aaaacttatc ttaaagagta ttcttttctt gcacaaatat tgccttatga agacatagag
     2761 cttgaaaaac tctatatatt acttaaaaaa cttgctagta agatcatctt gcctaaatca
     2821 gaggatttag ctaaaggaat tttagataat gtggattttg atagttatcg cttgcaactt
     2881 gataaaacac aagacatcgt tttacaagga aatggagagc taaagccttc gtttgcagat
     2941 ggttcgagca aaagtgttga agctgaatta gaagaacttt caaacatcat caaagatttt
     3001 aataacaaat acgcaaatat agactttaat gaaagcgata aaattgctaa aatcttatat
     3061 gatataaaag atgatatagc aaaaaatgaa agaatacgtg aaacttttag caaatccgat
     3121 atacaaaatt ctcgtatcga gtttgatgcg cttttaaaag ataaaattca agatatcttg
     3181 gagttaaatt tagaactttt taaacaattt aatcaaaata tagaatttaa agacaagata
     3241 gcaaatacca tgtttaatat ggtttgtaat gatttttaaa gtataaaatt gtcaaaaaag
     3301 gataaatgtt tgtgagtgta gattttttta aaacctttga tatttcaaat aatgaaagat
     3361 caaaagctaa aaaagtgcag ggtaaaaaat atgaaatttt tcttaatgaa aatgagcaca
     3421 gtcttataac tcctaaagtg tcttttaaag aaattttgag gtattattat ctttatccaa
     3481 aaaatgccat tccttctttt aaattacctt ttttcaagcc tgatttgagt ggttttagca
     3541 ctccgcatat tacttggctt ggacattctt cgctttttat aagttttaaa gaatataaaa
     3601 ttttgattga tcctattttt aacactcatg cttcgcctat ttcttttacc aacaaggctt
     3661 ttaaaaatgc tcctgtttat aatgtaaatg attttaatga aatttttgct gtgattatca
     3721 cgcattcaca ttttgatcat ttagatgcta agagtgtcaa agctttaaaa gaaaaagcac
     3781 gattttttat cacaccttta aaagtgggaa attatctaaa aagctatggg gtgagtgaga
     3841 aaaaaatcat agagcttgat tggtggagcg gcatagaatt tggtgattta aaaatcattg
     3901 caacacctgc acaacacagt tcaagcaggg gagatggtaa aaacaaaacc ctttgggctt
     3961 cttttgtgat ggaattttta agtgtagata agagagtgtt ttttagcgca gatggagggt
     4021 attttacaca ttttaaaaaa ataggtgagt attttggaga ttttgactta gcttgtcttg
     4081 aaagcggaca atttaatatc gcctggccat attcacactc ttttcctgag caaattttaa
     4141 aagaagcaaa agatcttaat gcaaaagctg tcatgcctat acattggggg agatttttag
     4201 caggaactca tgcatggaat gaggtggtaa aatttcttta tgaaaattta gatttacccc
     4261 ttatcacacc aaaaatgggc gaggcttatg aagtaggagc taaatttaaa caggattttt
     4321 ggtggaaaga agaataaatt aacacaagtt tataatttat attttggctt ttgctatagt
     4381 tttataaaac taaaaaagga gattttgtga aaatcattca atggaatgga gcggaattta
     4441 gcccaaaaga agtgaaaatc aatgttttaa ttgacaatga aaaaggtaaa gaaattcaaa
     4501 ttttattagc taaagatagc gtgatgaaag agcataaagc tccttttgct atacatgttc
     4561 aagttttaag cggtaaaatt tggtttgaag tggaaaagga aaaatttgaa ttaaatgttt
     4621 tagatatgat aagcctagag gcaaatgtag cgcattcttt aggtggattg gaaaattcta
     4681 taataagatt gagtttaaat aaatcagata gtgttcaaag ggtaaatgct gtgcttaaaa
     4741 agccttaaag taattttaag gctttagggc ttaataagaa gcaatgaagt ttgctattct
     4801 ttctaaacct tttttgataa gctcatcgct tgtggcataa gaaagcctaa aatatccatc
     4861 cattccaaaa cctatacctg gaacaacggc aactttttct tgttcaagca atttttggca
     4921 aaatttcata gaatcttttt ctattttttg tatatttaca aaaagataaa aagcaccttc
     4981 tggtttataa acactgatat ttgggatttg tttaagtatg tctaaggcta agttacggcg
     5041 tttttcaaag gcttgacgca ttttttctat atctttatca cattctccat ttaaagcagg
     5101 aatggctgca tgttgagtga tggagcaaat atttgaagta ctttgtcctt gaagtctttt
     5161 aacggctgaa attagggctt tatttttgct tgccatatag ccaaaacgcc atcctggcat
     5221 agctccacat ttgctaagtc cgttaatggt cacagtgcgt tttaaagcat ctttgcttac
     5281 acttgcaaaa gctacaaaat caaaaccatc atagcgaagt ttttcataca tttcatcact
     5341 taaaacagtg atttgcgttc cttctaaaac tttagcaatt tgagttaatt cttctttaga
     5401 ataaatcgat cccacaggat ttgaaggaga atttaacatt aaaaccttgg ttttggctgt
     5461 gatagctttt tttaattgtt cagcggtaat tttaaagcca ttttcttcta agccttctat
     5521 aaatacaggt tttccacctg caaattttac catttcagga tagcttaccc agtaaggact
     5581 agggataatc acttcatcat ctttttctac taagcattct atacattcaa aaagagagtg
     5641 ttttgcgcct acattggtga tgatttcatt tgtttcataa tcaagattat tatctttttt
     5701 aaatttggtt tgaatagctt ttaatacttc aggaattcct gcaacagcag tgtattttcc
     5761 acatcctttt tcaatagcac ttatagcggc atttttgatg gtttgtggtg tgtcaaaatc
     5821 aggttcaccc gctgaaaaac taatgatatc ctcgcctttg gctttaagtt cattggcaag
     5881 tgcagtgata gctaaagtga tagattcttc taaaacttga gatctttttg taagcatttt
     5941 tcaatcctta atagtttttg tttaatttta gcagaaaatt gcatttttac aataaattta
     6001 atttaaaaat gagttgtaaa tttcaataaa tgtgaaaatt tgtattaatt tttaggaa
//
LOCUS       DARGBD010000095         6035 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.095, whole genome shotgun sequence.
ACCESSION   DARGBD010000095 DARGBD010000000
VERSION     DARGBD010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6035)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6035)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6035
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.095"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            871..3695
                     /locus_tag="SFZ04_001515"
                     /pseudo
     CDS             871..3695
                     /locus_tag="SFZ04_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
     gene            complement(3963..4245)
                     /locus_tag="SFZ04_001516"
                     /pseudo
     CDS             complement(3963..4245)
                     /locus_tag="SFZ04_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782140.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
     gene            complement(4232..4459)
                     /locus_tag="SFZ04_001517"
     CDS             complement(4232..4459)
                     /locus_tag="SFZ04_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065762.1"
                     /translation="MTLIIENVNENFLPAFKGLAKSINAKCKISKPKLSSFESKILNA
                     SKELDKEKKVNTALSFNSHQDFVKAYQNGKI"
     gene            4732..4872
                     /locus_tag="SFZ04_001518"
     CDS             4732..4872
                     /locus_tag="SFZ04_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065763.1"
                     /translation="MKTTEYNTQQKNNKEYLAEREAVKKNYGKNGKRVRKTCYKCGVS
                     KT"
     gene            4879..5166
                     /locus_tag="SFZ04_001519"
     CDS             4879..5166
                     /locus_tag="SFZ04_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HEG8065764.1"
                     /translation="MKYIELSEAIAIHEKIIEKTGGLSGYNETQIGYLASALEHIKND
                     DYYPTITDKITHLIFSCVKFHPFADGNKRTSIFLGMHFLDLDKILPKNMNS"
     gene            5366..5509
                     /locus_tag="SFZ04_001520"
     CDS             5366..5509
                     /locus_tag="SFZ04_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065765.1"
                     /translation="MCKDQEYIEQRKVLWEKSFEAFKDDKVYQKEQLELAEAGINDGL
                     EED"
     gene            complement(5825..6028)
                     /locus_tag="SFZ04_001521"
     CDS             complement(5825..6028)
                     /locus_tag="SFZ04_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WGR domain-containing protein"
                     /protein_id="HEG8065766.1"
                     /translation="MTEKGNIRYYSIEIITTLFEEYMVERVYGNVRFKSCTGRKNNVF
                     PSFNEAQIFFEKLKKQKMKKGYA"
BASE COUNT         2151 a          850 c         1009 g         2025 t
ORIGIN      
        1 tataagtaat tatcttagat tgttaaatga ttttaatact ttaagcaaga tagaactcat
       61 aaatatatta gaaagtttaa gtttatataa tctttcaact ttaatgcaaa ctatgcaaaa
      121 tatacaatca aaaaatgaat ataactcaaa aaactttgat aaagatagta tctttttatc
      181 taatatgatt atgaatgtga gattgaagta agtataagta aatgatagat ttggtaaatt
      241 taaatcttgc taagtttatt atttagttca aataaaaata taaaaaaata tagaaattca
      301 atagaaagaa gagaagctta gttaaaagtt tgtttggtaa gccacaaggg agtttcgccc
      361 cttaaaaaag gggcaaggct aataagcctt gacagtaatt atataaatta gtataattat
      421 aagtacgaaa cgaaacatag tttcaccccc tttctagggc gtgattatgc cacagggttg
      481 cagccttgtg gcaaaaccct taatgcaatt ataccaaaca aattctttga cttcttaata
      541 cattttattt atgattgaat cttatctttt agcataagca agaaaaatat aaattaaaaa
      601 ataaaataaa tcaatagaaa ggaagatagg cttagttaaa agtttgtttg gttaaaccaa
      661 agggattgtt ctaaaccctg caaaagcagg ggatactcaa taagccttga catagcaaag
      721 cattaagagt ataattatta gaacaatttt gagcattaaa actcacctcc cttctgggcg
      781 gtaaattaac gctaaagggt tgcagccctt tggcgttgca cccttttata attacaccaa
      841 acaaactctt taacttcttt aatataatcc atgaaaagat tttacttgtt attctttagc
      901 actttgtttt ttgcaccttc atttttattt ggtgctacaa acatagctaa tggaaatcta
      961 atctatactt ggggttatgg cgatgtgata aatgaaatca tgcaggcggt taaaggtata
     1021 accactgaaa cagattatat cgttaatgca gccttggcta ttttattatt gcttttcagt
     1081 atcaaaaaag caatggatgg acaaacaagt cctgtgtttg aatttggaaa aatgtttatg
     1141 ctttttgctg tagtgtggta catgttttta aaagcaccaa atgacaataa tcaccgcttc
     1201 atgatttacg atgaagtcac tagcaaagat tatgtcattt ctcaaattcc tataggcata
     1261 ggaaaaagct ttgcattgat gacgcaattt gagaaggtta tcctagaagc tatggaaaaa
     1321 catttttcaa ctccacaatc tacaaatttt tctaatgcag gtttaggttt ttcacttcaa
     1381 gtgatgagta ctttgccaag cttaaagctt tcggctattg atgcaacttt gcaaaaaaat
     1441 attgattttt attttagaaa ctgcgtttca gtaggtatct tgcttaatca acaaggtaga
     1501 aatctttttc aaaactctga taatttaata caagatcttt tcacaaacat aggcaatggc
     1561 tctcagctta ctcctttgtt tgaaaataac aataatattg aaaaacaaag tgttgtgccc
     1621 tgttctgatg caggtcctca aatcgttgaa atgattaaaa acgatacaga tgaagctatg
     1681 aagattcatg ctgctttgct tggtatggcg aatgatatgg caaattatga gcaaaagttc
     1741 ttaggcgctg cacaaatcta taacgaacaa gctgtaagtg ctagatctta tttgcaacaa
     1801 tccatgataa tgcttgcttc tcaagatgca atcattaata ccgctaaatc agtaggttta
     1861 aatcctgctt ctgtggctgc aaatactgct tatgcggatc agcaatttta tgcaagtatg
     1921 caagcacaag gacacttggc acaaacttat ttgcctttag ctaaagctta tttaacagct
     1981 attatcatag gtttgtcttg gcttgttgct ttgctttcta ttgtgtttgg ctcttatgct
     2041 catattaaga tgttttttac tctatgtatt tggatagtac tttggactcc tatactttgt
     2101 attattaatt ttataaatga ttttaatctt atgaatgttg cacaggtgat aacaggtgga
     2161 aaagcagctt taagcttagg agataacatt cttatattca aagaagtagc aaatagatca
     2221 aatttcatga attatcttgt aatgagtact cctgttttag cttatgctat agctaaagca
     2281 agtgaacaag gatttgtaac ttttgcttct ggattatctc aagctctaac aggtgcttca
     2341 agagctgctg gaagctttgc aaatcagcaa gccttatcta cacaaactag cattgctgct
     2401 cctagaggag atgaagtttg ggcgatgaat gcaggggtga tgagcttgca aagtgctata
     2461 agtgcagggg gtggtagatt agcatgtcta gtataacagg gggtggaaca acagctagag
     2521 atgtgaatac aggtacaagt tttgctttgg gaaatcatgg tgaaatttct aatatgaata
     2581 ggacttgatg caaaacacgc acaaagcgaa actcaaacta gacaagattc tcttgctaat
     2641 tctattgccg atactcacaa aacaggcatt aatcacggta ttacctctga ttatcttaga
     2701 aatcatggtg caggagtaga agatactaaa gcaattgaga aagcagaaac gaaagcttta
     2761 aaagaaacta tgaatgaagc attaagcgat aaatctagct tctctgaaac agacaaaaaa
     2821 gctttagaag gaagtattag cgcttatgct agtggctcag cagggattga aatctttgga
     2881 aatggtggaa aaataggtgg agaaattaaa gggacagctt caataggcac aggctcaact
     2941 gaaacacaag aatattcaag aagcctaagt aaagaagggt aggctgcatt tgataaaatg
     3001 tatgctgaaa aacttggcaa tatcattaaa tctaatgata gtgtggcttc tgcttattct
     3061 aatgctctat ctacaagcac aggtagtgaa tttgctgatg ccaaacaaaa agcacattct
     3121 tatagtgaag caagtcaata cagtgaagct atacaggcaa gtaattttac ctaatatggc
     3181 tgaaaattac attgctgaaa ataatttggg tggaactaga gaacaacaag ttgctgctgc
     3241 agctaaaggg ttagaaaact tagccgcaag gggagatttg caaggcttgt tgcattatgc
     3301 taatatgaat acagctaagc caaatgctga tagaaatcat gatgttagca ataaatctta
     3361 ttacagtcct tcaagtgtag gagctaataa tgctcataat aatgatgcag tagctaatca
     3421 aaataagtta aacagcttag gaacaacagg ggggggataa tataagaaat gaatttaacc
     3481 aacaaagtgg ggctgctata agtaatttca aaaatcaagg aacaagtact tctaatgtgg
     3541 tcaataatag tgctaaagat gccatagtag aacaagatgc taacaggaga atgggagtaa
     3601 atcctagctc ttatataata caagatgcaa gtaaatcagg taatgagctt gcaaaagaag
     3661 ctcaaggttt atttgatgct atgagcaaaa aataagtcta gctttttagt taggcttagt
     3721 gatctcgtat agcaccgaat atataatcaa atttacgagg atcgctttct atatatcccc
     3781 caatttcact tgttccccca tgctttttct catcataggg aactattttt atatttttag
     3841 caaggaataa cacaaaagca aaacaatagc tgcaactccg caagaaagcc aaagaacaag
     3901 tatgagtttt tcggttgtag tcacttttgc ttttttccta catttatcca tctttattcc
     3961 tttcaatatt ttttaaataa cttactatga ctacctagtt ttaaaatatt tagctctaac
     4021 tcattattat gtttttgata aattaataac aagttagact ttatatgaca ttctctaaaa
     4081 tcttttaata caccttttaa ttgatgatct ttatatttag gttctaaatt ctcatcatta
     4141 gaaagtttta caataacttc atcagttatt ttacgctctt catcgcttat tttttttgca
     4201 agcttttata aaatctttat ggtaataaat tttatatttt gccattttga taagctttca
     4261 caaagtcttg atgcgaatta aagcttaatg cagtattgac ttttttttct ttatcaagtt
     4321 ctttgcttgc atttaatatc ttactttcaa aactactcaa cttaggctta gaaattttac
     4381 atttggcatt tatgcttttt gctaaaccct tgaatgcagg taaaaaattt tcattaacat
     4441 tttcaataat aagagtcata agcaactcct ttctcaattt atataacgta attataccat
     4501 tttttaataa tttttgcaag tatttttgtt acagaatgcc tattttttag gggtttgaaa
     4561 cggatttttt ttgacttgat tgttttattt attgcttaat gaaaattaat ttgggtataa
     4621 ttagcaaatt aattttttta gcttcatatt gatttgctaa tcaaatataa atgttaaaat
     4681 agtctataca gtatttagga tattaattga aagaataaag agggtagtaa aatgaaaacc
     4741 acagaatata atacgcaaca aaaaaataat aaagaatatt tagctgagag agaagcagtt
     4801 aaaaaaaact atggcaaaaa tggaaaaaga gttagaaaaa cctgctataa atgcggtgtt
     4861 tcaaagactt aaaaataaat gaaatatata gaactaagcg aagctattgc tatacacgaa
     4921 aagattattg aaaaaacagg tggattaagt ggttataatg aaacacaaat aggatatttg
     4981 gctagtgcat tagagcatat aaaaaacgat gattattatc ctacaataac tgataaaatt
     5041 acacatttaa tattttcctg tgtaaaattt catccatttg ctgatggaaa taaacggact
     5101 tcgatatttc taggtatgca ctttttagat ttagataaga ttttaccaaa gaatatgaat
     5161 tcataggtag tcttacttta gatgatatag taaaacacaa acaaagtgat gaagttttta
     5221 aagtgtttta taaaaaagat gataaaataa gattgcttag agttagtaat atgcaagctt
     5281 taaatcgttt tgataaactt aaaggtgcaa tgacaaaaat aattttagat agtggtttta
     5341 aacctgataa ataaaaagga ttaatatgtg taaagatcaa gaatatatag agcaaagaaa
     5401 ggttttatgg gaaaaaagtt ttgaagcctt taaagatgat aaagtgtatc aaaaagaaca
     5461 gcttgaactt gcagaagcag gaattaatga tggcttagag gaggattaat tatataatta
     5521 gccatatatt ttatattagt ttttttaaaa aaccgttttt actatattct ttaatctttt
     5581 gtattgtatt ttgattgtct tatttatgta attttatata taaaaaaagt tttttccaat
     5641 tttacaacaa aatcctttat ggtataataa aaataaaaat tatataagaa aggatacaaa
     5701 tggctataaa aattgaaatt agcggatttg ataaggattt tttacctgtt tttgagagtt
     5761 tagctaaaag cttatctcaa aagcctattt tatcaatgtt ttttcttatt ttttgagcaa
     5821 aaacttacgc ataccctttt ttcatttttt gtttctttaa cttctcaaaa aaaatttgtg
     5881 cctcattaaa acttggaaat acattatttt ttcttcctgt gcaactttta aaacgcacat
     5941 ttccgtaaac tctctcaacc atatattcct caaatagagt ggtaataatt tctatgctat
     6001 aatagcgaat gtttcctttc tcagttattc tgtgc
//
LOCUS       DARGBD010000096         5977 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.096, whole genome shotgun sequence.
ACCESSION   DARGBD010000096 DARGBD010000000
VERSION     DARGBD010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5977
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.096"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..613
                     /locus_tag="SFZ04_001522"
     CDS             <1..613
                     /locus_tag="SFZ04_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HEG8065767.1"
                     /translation="CDIKDNKAKVAIGDMVTDFLSVFQSLANSYAVSFSPLRIGEQVL
                     VIPVRGDLNSGVILRGLYQEKHRAKNIDENTFNIDFEDGTHLEYNSKSSTLKLDVVKN
                     INITCVDKTTHNQNNTLNTKNHTTNANTITLNAPSINLNGNTQIAGAISTSGEGGASG
                     TFSIKGNLNLIGNLQVSGNISDSKGDLTNHTHSCTCGATASPR"
     gene            622..813
                     /locus_tag="SFZ04_001523"
     CDS             622..813
                     /locus_tag="SFZ04_001523"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065768.1"
                     /translation="MKELFLLLFSLVFFMLFCMGAFYAFLNLNFFIKSIFIGFFIAFM
                     FLGFSQILENIFEFYKGLK"
     gene            810..1100
                     /locus_tag="SFZ04_001524"
     CDS             810..1100
                     /locus_tag="SFZ04_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HEG8065769.1"
                     /translation="MNYMVSIEESIKDILITPLGSRVMRPEYGSLLYTLIDRKIDDDF
                     KIKLTRYTAEAISKWEKRVKLKGVRLNECKDNKLSITLLFENYGDLTMELGK"
     gene            1097..2263
                     /locus_tag="SFZ04_001525"
     CDS             1097..2263
                     /locus_tag="SFZ04_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HEG8065770.1"
                     /translation="MSELLSANDSYFKQSFLKDIPYPQIIEELDYEKLLKAYEELFKS
                     FLKDNVELLESDPFKAILEALAYREMIIRARINESIKATYLHYAKGSDLDNVVANGYL
                     IQRLKGVKPAAKVEFELNTLLTYDVIIPKGAIFSNEKADLATLKEEVVIKKGQSKAQG
                     ILELDEFIQSKESKTEFLQTPLPFVAKIKQLEFFKGGASEESDEALRERAVMSVHRFS
                     TAGSEKGYIYHALSASAKVASIKALNNGAGKVRVIIKSEDELSVDVVKEYLSADERRP
                     LTDEVNVELAKKREFIVDAKLLLLELSRANEISQKIHALQKDFDLSVDLALGFIYKCL
                     HQDGVYKSEILSIKEKIINEEEQELKDLPLENIIIADDEFATLSFSLSYEKAVL"
     gene            2260..2880
                     /locus_tag="SFZ04_001526"
     CDS             2260..2880
                     /locus_tag="SFZ04_001526"
                     /inference="COORDINATES: protein motif:HMM:NF021220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HEG8065771.1"
                     /translation="MNTLILNHHPKQSKAIDLSAKTRFEDLNLASITNLALNCDERLL
                     PILANAYDVSIDGLNEKEARKLISKALLLDRYNGTTWAIKEALRAVFPTAVVKEWFNY
                     GGKPYFFKVKVSTTNVSFDERTLNTLERLIYDFKNVRSVLEAIEIEIKSKNDSFNANA
                     QISGETIEILPFQTTFLENEIKSTKNVFGIFMCEITRTNIDFKGVY"
     gene            2880..3959
                     /locus_tag="SFZ04_001527"
     CDS             2880..3959
                     /locus_tag="SFZ04_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEG8065772.1"
                     /translation="MAKSEYYTILTKIGIAKFIAARASGNGINLKSFKLSSKVILPSE
                     EMQSLEEIVYEANISSKSVDESNPNYVNLMCHVPSDVGGFEVNAVGVYDEAGDLLAVG
                     NVPRTYKPILKEGSAKELMIKIVMELSNAEEVILKLDPSVIMASRDYVDAIKVELNLK
                     IDALTQKYDAEFKKVWDEFAKYLLENKFNTEIAKYVTLATNQTITGAKDFTKLPTSSI
                     KATNDNQFVNLATLKENQLNLKDPELLALIGFNTYLDGTSLLKSHSMSNNVIYTNTTG
                     GKTPIAIKIQQIDNVVNQASISIYINNSLIKKINAIQYTNSTGKYIPLTYYEGILKPN
                     DTYKIELFNIVMDKPNIEATILNVR"
     gene            3969..4475
                     /locus_tag="SFZ04_001528"
     CDS             3969..4475
                     /locus_tag="SFZ04_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HEG8065773.1"
                     /translation="MKYFIDKNDNNQIYAYEDEVSDEQIKTGLTPISEEEFNALTSPP
                     KSEEELLNEAKELKINEINAKKENILNGGFSFKGKIYQSSNEDQLRINGAVTNALVNP
                     NLIPYIDWIALDNSTTRFSVDEFKLFASSMAYFVQETIFKASALKEKARNAQSKEELD
                     LIVWESEK"
     gene            4472..4843
                     /locus_tag="SFZ04_001529"
     CDS             4472..4843
                     /locus_tag="SFZ04_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HEG8065774.1"
                     /translation="MTKAELKRVCVKPYDKDRFEVISDYAFSLPNYKGIVPQGFKTDG
                     ASIPRLFWSLFPPFKSEYFSACVVHDFLCEKANSRTDYRTADLALKEAMTLLGCSRLK
                     IFVFYHSCNLYHAIKCLIKGK"
     gene            4943..5956
                     /locus_tag="SFZ04_001530"
     CDS             4943..5956
                     /locus_tag="SFZ04_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065775.1"
                     /translation="MKDYGISFIPDINQGSKEPSEPIVSDKLNAQKVNELIDKKLKLF
                     KEELVNKEELKSLIEEILQDQNFQNTNIKISKTPPNYNTQAKVGEIWAVLESKKQLFI
                     CTANDNDFTSWVDLLGDGSNDIIPKEKIIITFDNTTTGGQYGGCMSDLRLGFENGFAT
                     PNKVQDEYENAKFTMTKDGNGLNRSDFTIDSNPIAGENQILGTIKTSGIYQETYHKIA
                     HVFKKYNGGSDECCLWSSSGTREVSIELENTSMPNKLFARGNGYYGQTEITNVRVKKS
                     IFIGEQEIQSEDFNVEKLEASSDTYGDYVFLFEISKQDQIVMKKELNLNPKKTKNTKN
                     VKK"
BASE COUNT         2303 a          764 c         1092 g         1818 t
ORIGIN      
        1 ttgcgacatt aaagacaata aagctaaggt tgctattgga gatatggtaa cggatttttt
       61 aagtgttttt caaagtctag ctaattctta tgcagtgagc ttttctcctt taagaatagg
      121 agagcaagta ttagtcatac ctgtgcgtgg ggatttaaat agtggagtta ttttgcgtgg
      181 gctttaccaa gaaaaacata gagcaaaaaa catagatgaa aatactttta atatagattt
      241 tgaagatgga acgcatttag aatacaactc taagagtagc actttaaaac ttgatgtggt
      301 taaaaatata aatatcactt gtgtagataa aaccacccat aaccaaaaca acaccttaaa
      361 tactaaaaat catactacaa acgctaatac cataacgctt aacgctccaa gtattaattt
      421 aaatggtaat actcaaattg caggagcaat ttctacaagt ggcgaaggtg gggcaagtgg
      481 gacttttagc ataaaaggaa atttaaattt aattggtaat ttacaagtta gtggaaatat
      541 aagcgatagc aaaggcgatt taacaaatca tacccattct tgtacttgtg gtgccacagc
      601 ttcgccaaga taggaaaaac tatgaaagaa ttatttttgc ttttattttc attagtcttt
      661 tttatgctct tttgcatggg ggcattttat gcttttttaa acctaaactt ttttattaaa
      721 agcattttta taggcttttt tatagctttt atgtttttag gtttttctca aatactagaa
      781 aacatttttg aattttacaa aggtttaaaa tgaattacat ggtaagcatc gaagaaagta
      841 tcaaagacat tttaatcact cctttaggct caagagtaat gagacctgag tatggttctt
      901 tactttatac actcatagat agaaaaatcg atgatgattt taagataaag cttactagat
      961 atacagcaga ggctatttca aagtgggaaa aaagagtaaa gctaaaaggt gtgagactta
     1021 atgagtgtaa agacaataaa ttaagcatta ccttgctttt tgaaaattat ggggatttaa
     1081 ccatggagct aggcaaatga gtgagctttt aagtgcaaat gatagctatt ttaaacaaag
     1141 ctttttaaaa gatatccctt atccacaaat catagaagag cttgattatg aaaagctttt
     1201 aaaagcctat gaagaacttt ttaaaagctt tttaaaagat aatgtagagc ttttagaatc
     1261 tgaccctttt aaagccattt tagaagcttt agcttataga gaaatgataa ttagagcaag
     1321 aattaatgag agtataaaag caacttatct tcattatgca aagggaagtg atttagataa
     1381 tgtagtagct aatggctatt tgatacaaag gcttaaaggg gttaaacccg cagctaaagt
     1441 agagtttgaa ttaaatactt tacttactta tgatgtcatc atcccaaaag gtgcaatttt
     1501 ttcaaatgaa aaagcagacc ttgccacttt aaaagaagaa gtggtgatta aaaaagggca
     1561 aagtaaagca caaggtattt tagaacttga tgaatttatt caaagcaaag aaagtaaaac
     1621 cgagttttta caaaccccac tgccttttgt ggctaagatt aaacaactag aatttttcaa
     1681 aggtggagcc agtgaggaaa gcgatgaagc cttaagagaa agggctgtaa tgagtgtaca
     1741 tcgtttttca accgcaggaa gtgaaaaagg ttatatctat cacgctttaa gcgcaagtgc
     1801 aaaagtagct tccataaaag ctttaaacaa tggagcagga aaagtaagag ttatcattaa
     1861 aagtgaagat gaattaagcg ttgatgtggt taaagagtat ttaagtgcgg atgagcgaag
     1921 acctttaact gatgaagtaa atgtagaatt agctaaaaaa agagagttta tcgtagatgc
     1981 caaacttttg cttttagagc tttctagggc taatgaaata agccagaaga ttcatgcttt
     2041 gcaaaaggac tttgatttaa gtgtggattt agcactggga tttatttata aatgccttca
     2101 tcaggacgga gtttataaaa gcgaaatttt aagcattaaa gaaaaaatca taaatgaaga
     2161 agagcaagaa ttaaaagact tgcccttaga aaatataata atagctgatg atgagtttgc
     2221 aacccttagc ttttcactta gttatgaaaa ggcggtgcta tgaatacact aatactaaac
     2281 caccatccaa aacaaagcaa agccattgat ttaagtgcta aaacaagatt tgaagattta
     2341 aatttagcta gtatcacaaa tctagctcta aattgcgatg aaagattatt gccaatttta
     2401 gccaatgctt atgatgtaag tattgatggt ttaaatgaaa aagaagcaag aaagctaata
     2461 tctaaagcct tgcttttaga cagatacaac ggcacaactt gggctataaa agaagcttta
     2521 agagctgtat ttcctactgc agtggttaaa gagtggttta attatggcgg aaagccttat
     2581 ttttttaaag ttaaagtaag cacaactaat gttagctttg atgaaagaac gcttaatact
     2641 ttagaaagac taatttatga ttttaaaaat gttagaagcg ttttagaagc aattgaaata
     2701 gagattaaaa gtaaaaatga tagttttaat gctaatgcac aaataagtgg agaaactata
     2761 gaaatcttac cttttcaaac cactttttta gaaaatgaaa ttaaaagtac taaaaatgta
     2821 tttggaattt ttatgtgtga aataacaaga actaatattg attttaaagg agtgtattaa
     2881 tggcaaaaag tgaatactat accatactaa caaaaattgg cattgctaaa tttattgccg
     2941 caagagcaag tggaaatggt atcaatttaa aaagctttaa attaagttca aaagttattt
     3001 tgcccagtga agaaatgcaa agcttagaag agattgtata tgaagctaat attagtagta
     3061 aaagcgtgga tgaaagcaat ccaaactatg tgaatttaat gtgtcatgtg ccaagcgatg
     3121 tgggcgggtt tgaagttaat gcagtaggcg tttatgatga agcaggagat ttgcttgcag
     3181 ttggaaatgt cccacgcact tataaaccta tcttaaaaga aggcagcgct aaagagctta
     3241 tgataaaaat tgtcatggag ctttctaatg cagaggaagt tattttaaaa ctagatccta
     3301 gtgtgattat ggcaagtcgt gattatgtgg atgctattaa agtggaactt aatcttaaaa
     3361 ttgatgcttt aacgcaaaaa tatgatgcag agtttaaaaa agtatgggat gagtttgcta
     3421 aatatctttt agaaaataaa tttaatacag aaattgccaa atatgttact ttagctacta
     3481 atcaaaccat tacaggagcc aaagacttta ccaaactacc tacaagctct ataaaagcta
     3541 caaatgacaa tcaatttgta aatttagcta ccttaaaaga aaatcaactc aatttaaaag
     3601 atccagaact tttagcattg atagggttta atacctatct tgatggaact tctttactta
     3661 aatctcattc tatgtctaat aatgtgatat acacaaatac aacaggagga aaaacaccta
     3721 ttgcaataaa aattcaacaa atcgataatg tagtcaatca agctagtatt agtatataca
     3781 taaataattc tttaataaaa aaaataaatg ctatacaata cactaattca acaggtaaat
     3841 atattccatt aacatattat gaaggtattt tgaaaccaaa tgacacatat aaaatagaat
     3901 tgtttaatat tgttatggat aagccaaata ttgaggcaac aattttaaat gtcagataag
     3961 gagaaaaaat gaaatatttt atagacaaaa acgataataa tcaaatttat gcttatgagg
     4021 atgaagtgag cgatgagcaa attaaaacag gcttaacacc tattagcgaa gaagagttta
     4081 atgctttaac aagtcctcct aaaagtgaag aagagctttt aaacgaggca aaagagttaa
     4141 aaatcaacga gattaatgca aaaaaagaaa atattctaaa tggtggattt tcttttaaag
     4201 gtaaaatcta tcaaagttct aatgaagatc agttaagaat taatggagca gtaaccaatg
     4261 ctcttgttaa tcctaattta attccttata ttgattggat tgcgcttgat aattcaacta
     4321 caagatttag cgtagatgag tttaaactct ttgcaagtag catggcttat tttgtgcaag
     4381 agactatttt taaagcaagt gctttaaaag aaaaagctag aaatgcacaa agcaaagaag
     4441 aacttgattt aattgtttgg gagagtgaaa aatgactaaa gcagaattaa aaagggtttg
     4501 tgtaaagccc tatgataaag acagatttga agtaattagt gattatgctt tttctttgcc
     4561 aaattataaa ggcattgtac cacaaggctt taaaacagat ggtgcaagta tcccacgcct
     4621 tttttggtct ttgtttccac cttttaaaag tgagtatttt agcgcttgtg tggtgcatga
     4681 ttttttatgc gaaaaagcaa attcaagaac tgattatagg acagctgatt tagcattaaa
     4741 agaagctatg actttgcttg gatgttcaag acttaaaatc tttgtatttt atcattcttg
     4801 taatctttat catgcaataa aatgcttgat aaaaggaaaa taaaaaaagg tgagctaccc
     4861 acgcagtggg acgggggctt tagcaaaagc gactttgggc ggattttatt cgcacaaagt
     4921 gaaagcataa aaaggagtta aaatgaaaga ttatggaatt tcttttattc cagatattaa
     4981 tcaaggctca aaagagccaa gtgaacctat agttagtgat aagcttaatg ctcaaaaagt
     5041 taatgagctt atagataaaa aactaaagct ttttaaagaa gagcttgtta ataaagagga
     5101 gcttaaaagt ctcattgagg aaattttaca agatcaaaat ttccaaaata caaacataaa
     5161 aatatcaaaa actccaccta actacaatac acaagctaaa gtaggagaaa tttgggcggt
     5221 tttagaaagt aaaaagcaat tatttatttg cactgctaat gataatgatt ttacaagctg
     5281 ggttgattta ctaggagatg gtagtaatga tattatccct aaagaaaaaa tcattatcac
     5341 atttgataac actaccacag gtggacaata tgggggttgt atgagtgatt taagacttgg
     5401 ttttgaaaat ggttttgcta ctccaaataa agttcaagat gagtatgaaa acgcaaaatt
     5461 cactatgact aaagatggta atggtcttaa tagaagcgat tttactatag attctaatcc
     5521 tattgcagga gaaaaccaaa ttttaggaac gattaagaca agtggtattt atcaagaaac
     5581 ctatcacaaa atcgcccatg tgtttaaaaa atataatggt ggttctgatg agtgttgctt
     5641 atggtctagt tcaggaacga gagaggtaag catagaactt gaaaatacat caatgcctaa
     5701 taagcttttt gctagaggta atggatatta tggtcaaaca gaaattacca atgtaagagt
     5761 aaaaaaatcc atttttatag gtgagcaaga aattcaaagt gaagatttta atgttgaaaa
     5821 gttagaagct agttctgata cttatggaga ttatgtcttt ttatttgaaa tttctaaaca
     5881 agatcaaatt gttatgaaaa aagagcttaa tttaaatcct aaaaaaacaa aaaatacaaa
     5941 aaatgtaaag aaataaggag tgaataatgg cagcaaa
//
LOCUS       DARGBD010000097         5957 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.097, whole genome shotgun sequence.
ACCESSION   DARGBD010000097 DARGBD010000000
VERSION     DARGBD010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5957
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.097"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            16..543
                     /locus_tag="SFZ04_001531"
     CDS             16..543
                     /locus_tag="SFZ04_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEG8065776.1"
                     /translation="MRINYKKLFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKE
                     SNPIEPYKWRKHNKF"
     gene            552..725
                     /locus_tag="SFZ04_001532"
     CDS             552..725
                     /locus_tag="SFZ04_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065777.1"
                     /translation="MKKYTLMVLLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(726..1304)
                     /locus_tag="SFZ04_001533"
     CDS             complement(726..1304)
                     /locus_tag="SFZ04_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065778.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(1377..2267)
                     /gene="cmoB"
                     /locus_tag="SFZ04_001534"
     CDS             complement(1377..2267)
                     /gene="cmoB"
                     /locus_tag="SFZ04_001534"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HEG8065779.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(2350..4078)
                     /locus_tag="SFZ04_001535"
                     /pseudo
     CDS             complement(2350..4078)
                     /locus_tag="SFZ04_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(4137..4277)
                     /locus_tag="SFZ04_001536"
     CDS             complement(4137..4277)
                     /locus_tag="SFZ04_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065780.1"
                     /translation="MLKMIKIQKVKSLLDLVKKLKNKQSLKIKNQTNTKENLNKTHYL
                     TI"
     gene            complement(4265..5903)
                     /locus_tag="SFZ04_001537"
                     /pseudo
     CDS             complement(4265..5903)
                     /locus_tag="SFZ04_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865998.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
BASE COUNT         1905 a          911 c          865 g         2276 t
ORIGIN      
        1 caaaatgatt aaaaaatgag aataaattat aaaaaattat ttaatctaag aaaattatta
       61 agtgatccaa aaaaactttt ttctgtatta atcttcactc ttgtagttgt ttttatccag
      121 aactatattg cccaaaattc tagttttgaa ggaaaagtag ttagaattat tgatggagat
      181 actatagaag ttaatcatga aaacaaactc gctagaataa gattttttgg tatagatgca
      241 ccagaactta aacaaagttt tggaaagcag tcaaaagaag ctttaagtag aattttaagt
      301 ggcaaacaag ttgaaattat ttataaaaat aaagatactt atggtagaat tgttgctatt
      361 gtaaagctta atgatgttga tattaatcga tttttggtaa gcaaaggcta tgcttgggct
      421 gatacttact atagtaacgc ttataccaaa gaacaagaaa atgctaagaa aaatcattta
      481 ggtctttgga aagagagtaa tcctatagag ccttataaat ggagaaaaca caataaattc
      541 taaggaaaaa catgaaaaaa tatactttaa tggtgctatt agctttagga atttctggat
      601 gttttgtaaa tgaaagaggg atttcaaatc gtttttatga tgattgtaaa gagtattatg
      661 atggaagtgg aacttatcat aaggattgcc caaaaaattg ggtagatatt aaaatgactc
      721 cttgattatt ttccacccac agaggccatt aatgcagctg ctacagcttc tggattgttg
      781 attttggcac cttgttcttg attttctgta ggtttaacag tgttaagtgg cggacgcttg
      841 agtttaaata tatgctcatc ggtgctaaca acttgtatcg ttccttcaaa cattttaact
      901 tctttaacat gtccaaccac ttttacatct ctttttttgg aggtttcgtc aaaaagtgca
      961 tgagcttcaa gttctaaaac atcgcctaat ttaagcggag cataaaaaaa acattttgat
     1021 ccaataatca ctgaaaattc tttattgata gaggcttgtg ctacatagtt tgccgcagcg
     1081 aaaataaagg catcaaaaat caatccttga tcatctgcta ccatttcgct tgtggttatt
     1141 aaaattgatt tggcatagtt tttatcaatt tctataatgg ttccagcaag agaggtgttt
     1201 aattcaggac aagtgagtaa ttctgctcta acgcgagata tatcttctgc agatgcgtat
     1261 tcttcaagtt gtgcatattc ttcaaaatta tctttttttg ccatatctaa cctttaaatt
     1321 ctacttatct acttcaaaat atctaatttt caatatcggt aaaaaataaa aagaatttat
     1381 attttaatgc gtatataaac tcttttgggt gcttcatagc cttcaatggt aagattttta
     1441 tcctttggat ctaagaaatt ttccagcgaa aaagagtcta tccattctgt ttttctttgt
     1501 tcgttttcat cggttttttt tgtagccaaa acttcaaatt ctttaaatcc tgctctttca
     1561 caccagtttt ttaatgcact aatgcttggt acaaaataaa tatttggaat tttagaataa
     1621 gttttattag gcacaagagc gatttctctc tcatcttcta tatacatggt atctaaaaaa
     1681 acaactccat ttttattaag tcctgctttt aaatctttta gcatttttat aggatcactt
     1741 ctatgataaa tcaccccaag acagaaaatc acatcaaatt tcaagccata gcttggaaga
     1801 tcttctacgc ctaaaagttc gtattttata ggagttttag ctaaagcgtt aatgagttca
     1861 aattgcaaac ggtatttgat agaaggatca aaacctatga gttttgcagg attaaattca
     1921 agcattttaa acatataata accattatta cagcctatat cagcaacgca tttttgagaa
     1981 atttcgttca tgaaaggctt tagaatgttg aatttaataa aactttgcca ttctgtatcg
     2041 atgaaaagat cgtctatttt aaaaggacct tttctccatg gtttaagttc ttttgctata
     2101 gctaagattt catctttggc ttgagaattt gtagataaat ttacactatc atctaaagaa
     2161 aaattacaag caagattgag agctttaagt tcttgaattt tagcgtataa agggtgattt
     2221 agaaattgtt tttcaagtaa attttcttgc atttttatcc ttgacatttg cttttaatgc
     2281 taaattataa cattaaaagc ttttatggca atataaatta tatgcattaa atatttgatc
     2341 aaaaataact caaaaatact ttctaaagat tacataagct ttagaactat aatcatcatc
     2401 tagcttatac ttctttaaag ctctagctaa atcaagcttg acataaaaat tccctgtttt
     2461 attataaagc agttgtaaac cataagcatc tatatagttt gtataagaat cattctcata
     2521 ccaagaataa cttatatcat aaaaaggagt aatataaaaa atcttttaaa ggagtagcca
     2581 ttctaagtcc aaagctggcc actacagcat tatctcatta ttataagccc ttactccata
     2641 aggacctcct aaagatatgg tttcactact atctaatgta gatccattga taacttgttg
     2701 ataatttaaa ctaaaaagat gagtaaaggt atcattaagg aaataagcat tgttaagatt
     2761 gacattgagt ttagcaaatt ttccaaagcc atctccatct gttttagaac tcattcctaa
     2821 tatagtagtt cccccatctt taacattatc atagcttaca ttagcactat aagaaaaact
     2881 atcattacta atgccattat aaactccttc tataccaaag cttatcgtat cagagctttt
     2941 atctatagtc atgatattta atcttgaatt actaagcttt ttatgataat aacttgaagt
     3001 taaataaaaa gaattataag tcgtaatcca caaaggatat tttaaatcta tacctagatt
     3061 ttcagaagtt cctataaagt ttgcattttt ataagctcct cctaaagcat agtttctttt
     3121 agaataactt cgagtgattt ttaaattccc taagaaagta gtatagctta taccatagtt
     3181 agtttgtgct tcatcgcttc tttgcaaata agcattaaga ctatctcttt gatgagctat
     3241 gttattaaaa ctcatactag caccacccct attatctgcc tgattctttt ataccgtaat
     3301 tatctccata aaacaataca gaaacaaagc tatcactagg ggtagtttct atcactatat
     3361 ctgtgtcacc tagattatct cctgctttta aagaagcaag ggtttgtatg ccatacattt
     3421 cattgacttt ataaaccgca tcttctacta atttagtagt gatgatttca cctttatgat
     3481 taggtaattt gctttctata gtataatctc ttacactaga attgttttga accacatatt
     3541 tacctaaaac acctaaggtg atattgattt gaatttgatc ttttagttct tgttgtggga
     3601 tataagctgt agcagcagga taaccactaa cttgaacata ataagaaata atattggcta
     3661 tatcttgtaa gtcttgaact gaaatacttt cttttttgta atcgtttaag gcttcttgta
     3721 aaacttgctc atctaaacct agatctttaa agtttatgtt tttattggta atatgaaagt
     3781 taaagctaac tttatgaatt gattcttctt tagaagtatt ttttaaagaa ggagtgtttg
     3841 aatttggggt tttagttttt aaagtattat cattagacaa gttaggttga tttttttgaa
     3901 tgttgttatt atctttttga gtgtttttct ttgtgttggt ggtttttgaa ttattattat
     3961 tattattatt atcactagta ttagaatgat ctatgataat cactccatct tttactttta
     4021 aagtgttatt gtagtttttt aagttagcat cttctttata aggagattgt tctaacattt
     4081 gtatggtttt tttattatct ttagtatcac tagcataaag gcttaagata gctaaactag
     4141 atagtaagat aatgcgtttt atttaaattt tccttagtgt ttgtttgatt tttaatcttt
     4201 aaactttgtt tgttttttaa ttttttaaca agatccaaaa ggcttttaac cttttggatt
     4261 ttaatcatct tgagcaagga tttcctgctt taaaattatc cgatactata caacattacc
     4321 actttcttga gtactggctt catctatact tgcttgttta tcatcttcat tgatatttgg
     4381 atcttcatct gtagtttgta taaaaagctg tagcaatgcc aggttcttgt tgtcctatgg
     4441 tatcatttgg gttattatta gaaccgttgt tgttgctatt gttaatatca cctgaatcgg
     4501 ttccatcgtt tccgttgttg gagttgttag atcctaaatt tataatggat actggcttat
     4561 agtttgcact atattttcat tgactgtaag atgactagtt ccatttatgc tcgcacttgc
     4621 taaagtttta ttagaatttt ctaaactaga attagtattc gctgtagcga tttgaagagc
     4681 tattgtagct tgttgtaaat cactagaaac tttatctaca gcttgtttta aacctgcaat
     4741 aactttatcg ccattattac ctgttatacc acttagagct gtattgtaag ctttaactgc
     4801 ttcattataa gcatttgcag cagtatcgta agttttttga gcgttttctt gcccttcggt
     4861 cattttagga attttgagaa agaatttcct ttgttttaat aatggcttga ttagcttttc
     4921 ctagatcacc ataagaattt cccaatactt cctttaaagc gtttgcaaat gttgcattat
     4981 tgctatcttg agtttgtcca tataaagcag taataaaatc catactttga ttatgcttgt
     5041 tagttcatca gctgttaata tttttccatc tttataaaat ttacttaagt cgctaatatc
     5101 aacactagaa ttaaatttca agtcattaaa tatagaattt aaaacttcat ttgagatgtt
     5161 atctttagca ataagatcgc tagtttcttt atagcctatt gtgtctgttg gatctcctcc
     5221 tggtccagtt aagcctttat tagatcttat actcaatatt acagagtctt cttttttatt
     5281 gtatttgatg caggaccacg aatgacaaat gtatcattac tatagacatt aagatagacg
     5341 gtattggatt gttctttttt atttgtaaaa atgaatttac cataatcagt gccaccatat
     5401 ttcatatttg aaacttgatt gcctgccata gcaactcttt ctcctaccgt tatagtttct
     5461 aaatttataa catttcctgc attggattta attacaggtg atattgtttt aggatttcct
     5521 ttaaatgctg aaagttttcc atcttttgca aactccttca tctccttatc acctattgat
     5581 gaagcagaca gaacaatttt tttccacctt tacccactac tatgccatta ggattgatta
     5641 aaaagatatt attgcttccg ctattgagtg ttccatctat aatgagagct tttagaacca
     5701 tagacaatat ttaaataatt ttggttagtt tttccttgtc caaaatttac agtttcatca
     5761 cttgctatat taaaaccacc actaacactt atacttccac ttgttccatg agtgaactta
     5821 cccccacttg gtaaagcata gctttgtgta aaaagtaaag aacctacaac taaagacaaa
     5881 gaaagtttat ttaacttttt catgacttgc tcctttttgt aagattaaga tttaagaatc
     5941 ttttgtttat atttata
//
LOCUS       DARGBD010000098         5916 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.098, whole genome shotgun sequence.
ACCESSION   DARGBD010000098 DARGBD010000000
VERSION     DARGBD010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5916
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.098"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1019
                     /locus_tag="SFZ04_001538"
     CDS             <1..1019
                     /locus_tag="SFZ04_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEG8065781.1"
                     /translation="EILESGWYILGKQCEKFENNFAKYCGVKHCIGVANGLDALRLII
                     KAYNFKENDEIIVPANTYIASILAITDNKCKPILIEPDINTYNINPDLIEEKITKKTK
                     AIMVVHLYGQVCDMEKIQLLANKYNLKIIEDCAQAHGAIYKDKRVGNLGDAAGFSFYP
                     GKNLGALGDAGCICTNDDNFASKIRALANYGSHKKYENLYIGLNSRLDEIQAAFLDIK
                     LKYLDEDNNKRKNIANFYLQNIKNENIILPSNKFDHVWHLFIVKTKLRDELQHYLNNH
                     DIQTIIHYPIPPHKQKCYKDLNHLQLPVTENIHQEVLSLPISPTMKENDFKKVADILN
                     KWKV"
     gene            complement(1051..2304)
                     /locus_tag="SFZ04_001539"
     CDS             complement(1051..2304)
                     /locus_tag="SFZ04_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG8065782.1"
                     /translation="MKKSKSIQIIKQQGIAEFIKYKKNKIYTKYEKKFNINIFTPYLL
                     KFCKPLKDDYKFILFSYGVSGHWAFKSFLKYCELDDFVLYWNNYSYYKEYKNFNKKNY
                     YVEIAWYQSMQPKYKHISKILNKNKPVVILTRDPISRLKTMVNHGSYKIEELGKNELK
                     NFYINEDIFENLDRIRYTDKNGHNANLKKPDLSSIYFIVNEELSFSYFSNINLIKNKN
                     ILYVDTKSISKDNAFATIKTLAKELNFKEPNDNDEYKFTQKFWNELYYLLPYRLIVNN
                     DILIIVSDENKVFLDNDKHYNEIKDDLIDIKKELVNTKSKLFDKISINIENKNWIIIK
                     DDKALINDLREYFEKFMIILEKKANERLENMVKEEDVLNYLREHQDLGKKIKNILDYE
                     LQHIKEHRPDIINSWEYYKKFLEIF"
     gene            complement(2301..3323)
                     /locus_tag="SFZ04_001540"
     CDS             complement(2301..3323)
                     /locus_tag="SFZ04_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002891861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065783.1"
                     /translation="MIYYPYYLKKYLAKIACLFIPNKNIRAIIREKLLNQFMQIKLDN
                     LNSYIPKDIVDNIEKYDNEHFYKINHIIKSKHKGFFDFDEKSKNPTSPLNPWAYIRVK
                     NEALTLKASLKSILPAIQRGIIGYNDCNDGSEEIILEFCKQYPSFIPVKYPYEVQIEN
                     PQSEENKLYSYYNYVASFIPQGEWLIKIDVDHIYDAKRLYKSFYIPKKDYDILCYSRI
                     DFYYKDDDRAEVFIVKYKSINNILNNKSNDQWLIKNNHLKWAESMHEDRYCIEYLDIK
                     KLKIYQTEFLNYHFPYFKRSLDKNKIELIPIDDFSIKEYKDIISPDMVTKEKLLYLKK
                     YIKENQ"
     gene            3394..4167
                     /locus_tag="SFZ04_001541"
     CDS             3394..4167
                     /locus_tag="SFZ04_001541"
                     /inference="COORDINATES: protein motif:HMM:NF013882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HEG8065784.1"
                     /translation="MKFFIINLKIAKDRKEYMQNLCLKHNLDYEIIQAVDGKELDSDF
                     VKNISDFSLSEKYLGRTLSLGEIGCALSHKKCFERMFELNLNECLILEDDAYFDEKLN
                     YILSLKDKFPKDLELFLLGHYRQVYLDDGFRIESPFSLRYDYKIDDFYHAKRLVGGGN
                     GTHGYYINKNGALKMYKYLEKIIFPYDHCTSNDNIINVYALYPVVITTDEIFGAQTYV
                     QDDNKRRYRKRSKISKYIKKIKNKIIFFIPSLKKLRKYE"
     gene            4160..5116
                     /locus_tag="SFZ04_001542"
     CDS             4160..5116
                     /locus_tag="SFZ04_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide synthesis protein"
                     /protein_id="HEG8065785.1"
                     /translation="MNNFVLYSLYFIYSAFFLNKHRRIIKGKILHQKEHENIANYLEN
                     AYIKKYFENKLDDIQIKKTRNINGKKIIWQFWYQGIDNAPCIIKKCFKSVQKYKGNYE
                     VVLLDKDNIKDYLIFPDFIYQKIDDKKFGEKTITIFSDLLRVSLLNNYGGIWLDAGMF
                     LSGEIQKEILDQDFFIFHRSTKKPQDYKNWINFNYNFFSWDEKFKVNIVNGFILSNKN
                     NEIMKIMQDILINYWKYENKLVYYFMFQILFDALKKKYLNLNLYITNDTDIHLLQYHA
                     KDKYSDKLWNDIKNKTSIHSLKIFKKIRKHSMIDKILFKDTI"
     gene            5113..>5916
                     /gene="yibB"
                     /locus_tag="SFZ04_001543"
     CDS             5113..>5916
                     /gene="yibB"
                     /locus_tag="SFZ04_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YibB"
                     /protein_id="HEG8065786.1"
                     /translation="MIDNEITIVTAFYDIGRKDIKNFERDNDKYLSYFEFLAGIKNKM
                     IIYTQENIKEKILDTRKKHNLEDKTIIITKELQEFDEQGYKKIIDTFRNYDQSINRKN
                     PNNIECISPMYCYLMYLKPFFVCDAIQRGLTDKNIMWLDFGFNHGGNFFVDKDQFNFY
                     LQKQNSIDENKINLFSIKNDDKQTLANIYFSMETFLMGGIIFAKSKNWLLFKHHMQKC
                     IKYFTSFGIIDDDQIMLLWCARNYRKNYNIIKVYFWFDSLYHFIPQNIAK"
BASE COUNT         2273 a          656 c          707 g         2280 t
ORIGIN      
        1 aagaaattct agaaagtggt tggtatatac ttggaaagca atgtgaaaaa tttgaaaata
       61 attttgcaaa atattgtggg gttaaacatt gcataggcgt tgcaaatgga cttgatgctt
      121 taagattgat cataaaagct tataatttta aagaaaatga cgaaatcata gttcccgcaa
      181 atacatacat agcatcaatt ttagctataa ctgataataa atgcaaacct atactgatag
      241 agcctgatat caatacttac aacataaatc ctgatttaat agaagaaaag atcacaaaaa
      301 aaactaaagc tatcatggtt gttcatcttt atggtcaagt ttgtgatatg gaaaaaattc
      361 agttgttagc taataaatac aatttaaaaa ttatagaaga ttgtgctcaa gcacatggcg
      421 ctatttataa agataaacga gttggaaatt tgggagatgc cgccggtttt tctttttacc
      481 ctggtaaaaa tttaggtgct ttaggggatg ctgggtgtat ttgcaccaat gatgataatt
      541 ttgcatctaa aattagagct ttagcaaact atggctctca taaaaaatat gaaaatttat
      601 atataggatt aaattctaga ttagatgaga tacaagctgc ttttttggat ataaaattaa
      661 aatatttaga tgaagacaat aataaaagaa aaaatatagc aaatttttat ctacaaaata
      721 taaaaaatga aaatattata ttacctagta ataaatttga tcatgtttgg catctattta
      781 tagtcaaaac aaagcttaga gatgaattac aacactatct aaataatcat gatattcaaa
      841 ctattataca ctatcctatc cctcctcata agcaaaaatg ctataaagat ttaaatcatt
      901 tacaactacc cgtaacagaa aacatccatc aagaagtttt gtcattacct atatcgccaa
      961 caatgaaaga aaatgatttt aaaaaagtgg ctgatatatt aaacaaatgg aaagtctgat
     1021 agatcgctct ccattttatt cgcttattct ttaaaaaatt tcaagaaatt ttttatagta
     1081 ttcccaacta ttaataatat ctggtctatg ctcttttata tgttgtaatt cataatccaa
     1141 aatattttta attttttttc ctaaatcttg atgctccctt aaataattta aaacatcttc
     1201 ttcttttacc atattttcaa gtctttcatt cgcttttttc tctaaaataa tcataaattt
     1261 ttcaaaatat tctctaagat cattgattaa agctttatca tctttaataa tgatccaatt
     1321 tttattttct atattaattg aaattttatc aaataacttg ctttttgtat ttacaagttc
     1381 tttttttata tcaattaaat catcttttat ctcattataa tgcttatcat tgtctaaaaa
     1441 tactttattt tcatcagata ctattatcaa aatatcatta ttgacaataa gtctataagg
     1501 tagtaaataa tacaattcgt tccaaaattt ctgcgtaaat ttatattcat cattatcatt
     1561 tggttcttta aaattaagct ctttagcaag agtttttata gtggcaaatg cattatcttt
     1621 tgaaattgat ttcgtgtcta catataatat atttttgttt ttaatcaaat ttatatttga
     1681 aaaatagcta aaacttagct cttcgtttac gataaaatag atagatgata aatcaggttt
     1741 tttaagatta gcattatgtc catttttatc tgtatatctt attctatcta aattttcaaa
     1801 tatatcttca tttatataaa aattttttaa ttcattttta ccaagttctt caatcttata
     1861 agaaccatga ttaaccattg tttttaatct agatatagga tctcttgtca aaattacaac
     1921 aggcttattt ttatttaaaa ttttacttat atgcttatat tttggctgca tactttgata
     1981 ccaagctatt tctacataat aatttttttt attaaaattc ttatattctt tataataact
     2041 ataattattc caatataaga caaagtcatc taattcgcaa tattttaaaa aacttttaaa
     2101 agcccaatgc ccacttacac catagctaaa taatataaat ttataatcat cttttaaagg
     2161 tttacaaaat tttaataaat aaggagtaaa aatattgata ttaaattttt tctcatattt
     2221 agtgtatatt ttattttttt tatattttat aaattcagct attccttgct gtttgattat
     2281 ttgtatggat ttcgattttt tcattgattt tcctttatat atttttttaa atatagcaat
     2341 ttttctttag ttaccatatc aggtgatatt atatctttat attctttgat actaaaatca
     2401 tctatgggaa ttaattctat cttattttta tctaagcttc tcttaaaata tggaaaatga
     2461 tagtttaaaa attctgtttg ataaattttt aactttttta tatccaaata ctctatacaa
     2521 tacctatctt catgcatact ttctgcccat ttaagatgat tattttttat caaccattga
     2581 tcattactct tgttattcaa gatattattg atactcttat actttactat aaatacctca
     2641 gctctatcat catctttata ataaaaatct attcgagaat aacaaagtat atcatagtct
     2701 tttttaggta tataaaaact tttgtaaagt cttttagcat cataaatatg atcaacatct
     2761 atttttataa gccattctcc ttgtggaata aagcttgcaa cataattata ataactataa
     2821 agtttatttt cttcactttg cggattttca atttgtactt cataagggta ttttactggt
     2881 ataaaagaag gatactgttt gcaaaattct aagattatct cttcgcttcc atcattgcaa
     2941 tcattatatc ctataatccc tctttgtata gccggaagta tactttttaa cgaagctttc
     3001 aaagttaatg cttcattttt tactcttata taagcccatg gatttaaagg tgatgttgga
     3061 tttttagatt tttcgtcaaa atcaaaaaat cctttgtgtt tagattttat aatgtgattt
     3121 attttataaa aatgttcatt atcatatttt tctatattat ctactatatc ttttggaata
     3181 tacgaattta aattatcaag ttttatttgc ataaattgat tgagtaattt ttctctaatt
     3241 attgccctta tatttttatt tggtataaac aagcatgcaa tcttcgctaa atattttttt
     3301 aaataatacg gataatatat cattgtcata acctttttta tttatattat agtataattt
     3361 tatcttataa attattatga taggttttta tttatgaaat tttttataat caatttaaaa
     3421 atagccaaag atagaaaaga atatatgcag aatttatgtt taaagcataa cttagattat
     3481 gaaatcatac aagctgttga tggaaaagag ttggatagtg attttgtaaa aaatattagt
     3541 gatttttctt tatcggaaaa atatttaggt agaactttaa gtcttggtga gatagggtgt
     3601 gctttatccc ataaaaaatg ttttgaaaga atgtttgagt taaatttaaa tgagtgtttg
     3661 atattggaag atgatgctta ttttgatgaa aaattaaatt atattttaag tttaaaagat
     3721 aaatttccaa aagatttaga attattccta cttggtcatt ataggcaagt ttatttagac
     3781 gatggatttc gtatagaaag cccattttct ttaagatatg attataaaat agatgatttt
     3841 tatcatgcaa aaagattagt tggtggtggc aatggaaccc atggatatta tatcaataaa
     3901 aatggtgcct taaaaatgta taaatactta gaaaaaataa tatttccata tgatcattgt
     3961 actagtaatg ataacataat aaatgtatat gctttatatc ctgttgttat aactactgat
     4021 gagatatttg gagcccaaac ttatgtgcaa gatgataata aaagaagata tagaaaaaga
     4081 agtaaaattt caaaatatat aaaaaagata aaaaataaaa tcatattttt tatacctagt
     4141 ttaaaaaaat tgagaaaata tgaataattt tgtattatat agcttgtatt ttatttattc
     4201 tgcatttttc ttaaataaac atagaagaat tataaaaggt aagatcttac atcaaaaaga
     4261 acatgagaat atagctaatt atttggaaaa tgcttatata aaaaaatact ttgaaaataa
     4321 attagatgac atacagataa aaaaaacacg gaatataaat ggtaaaaaaa taatatggca
     4381 attttggtat caaggtattg ataatgcacc ttgcattata aaaaagtgtt ttaaatctgt
     4441 tcaaaaatat aaaggtaatt atgaagttgt tttacttgat aaagataata taaaagatta
     4501 tttaatattt cctgatttta tttatcaaaa aattgatgat aaaaaatttg gagaaaaaac
     4561 gataactatt ttttctgatt tattaagagt ttctttgctc aataattatg gtggaatttg
     4621 gctagacgct ggtatgtttt taagcggaga aattcaaaaa gaaattttag atcaagattt
     4681 ttttattttt catagatcta caaaaaaacc gcaagattac aaaaattgga taaattttaa
     4741 ttataatttt ttttcttggg atgagaaatt taaagttaat attgtaaatg gttttatatt
     4801 atcaaataaa aataatgaga ttatgaagat aatgcaagat atattgatta attattggaa
     4861 atatgagaat aaattagtat attattttat gtttcaaata ttgtttgacg ccttaaagaa
     4921 aaagtattta aatttaaatt tatacataac aaatgataca gatattcatc tcttgcaata
     4981 tcatgcaaaa gataaatata gtgataaatt atggaatgat ataaaaaata aaacaagcat
     5041 acattcatta aaaattttta aaaaaattag aaaacattcc atgatagata aaatattatt
     5101 taaggataca atatgatcga taatgaaatt acgatagtaa cagcttttta tgatataggt
     5161 agaaaagata ttaaaaattt tgaaagagat aatgataaat atttatctta ttttgaattt
     5221 ttagcaggta tcaaaaataa aatgattata tacacccaag aaaatataaa ggaaaaaatt
     5281 ttagatacaa gaaaaaaaca taatttagaa gacaaaacca taataataac caaagaatta
     5341 caagaatttg atgagcaagg ttataaaaaa ataatagata cttttagaaa ctatgatcaa
     5401 agtataaata gaaaaaatcc aaacaatata gaatgtattt ctcctatgta ttgctacctt
     5461 atgtatttaa aacctttttt tgtatgtgat gctatacaaa gaggtttgac tgataagaat
     5521 ataatgtggc ttgattttgg ttttaatcat ggaggaaatt ttttcgtaga taaagatcaa
     5581 tttaactttt atctacaaaa acaaaatagt atagatgaaa ataaaattaa tctcttttca
     5641 ataaaaaatg atgataaaca aactttagca aacatttact tttccatgga aacattttta
     5701 atgggtggta ttatattcgc aaaatcaaaa aattggctct tatttaaaca tcatatgcaa
     5761 aaatgtataa aatattttac ctcatttgga ataattgatg acgatcaaat aatgctttta
     5821 tggtgtgcta gaaattatcg aaaaaattat aacattataa aagtttattt ttggtttgat
     5881 tctttatatc attttatacc acaaaatatt gcaaaa
//
LOCUS       DARGBD010000099         5869 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.099, whole genome shotgun sequence.
ACCESSION   DARGBD010000099 DARGBD010000000
VERSION     DARGBD010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5869
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.099"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..523
                     /locus_tag="SFZ04_001544"
     CDS             <1..523
                     /locus_tag="SFZ04_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065787.1"
                     /translation="EDIFTEIGKNNFKKTLEKFLDKKYKIKLDDIYIISLSGVEKFDL
                     EEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPTPSVPNLEVKQVEQLF
                     KDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQIFKENNASKPYHLPQT
                     GYDIKLDESSTQN"
     gene            complement(520..1029)
                     /gene="lolA"
                     /locus_tag="SFZ04_001545"
     CDS             complement(520..1029)
                     /gene="lolA"
                     /locus_tag="SFZ04_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEG8065788.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDIFKAK
                     IPQNYDIVR"
     gene            1129..3717
                     /gene="secA"
                     /locus_tag="SFZ04_001546"
     CDS             1129..3717
                     /gene="secA"
                     /locus_tag="SFZ04_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEG8065789.1"
                     /translation="MFLNTLKAVFGTKNDREIKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3714..4919
                     /locus_tag="SFZ04_001547"
     CDS             3714..4919
                     /locus_tag="SFZ04_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8065790.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRVLFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            4942..5727
                     /locus_tag="SFZ04_001548"
     CDS             4942..5727
                     /locus_tag="SFZ04_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG8065791.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            5789..5864
                     /locus_tag="SFZ04_001549"
     tRNA            5789..5864
                     /locus_tag="SFZ04_001549"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5822..5824,aa:Lys,seq:ttt)
BASE COUNT         2052 a          709 c         1088 g         2020 t
ORIGIN      
        1 tgaagatatt tttacagaaa ttggaaaaaa taattttaaa aaaactttag aaaaattttt
       61 agataagaaa tataagatta aactagatga tatatatatc atatctttaa gtggagtgga
      121 aaaatttgat ttagaggagt ttaaacgctt tttagaaagt actgaggcta aagagaaggg
      181 tatgggtagc gaggtaaaaa aagcacttga aaacttagaa gttcctaaaa ctcaagttcc
      241 tagtgttgaa aagatcccaa ctcctagtgt tccaaattta gaagtcaagc aagttgaaca
      301 gcttttcaaa gatccagatg aagaaaataa aaatgacaat ggagaaatca atatagataa
      361 tttaaataca cctaaaatga ctccagatat agaagaaaaa attaaaagag atttaatcgc
      421 caatcctcca caaatattca aagaaaataa cgcaagcaag ccttatcatt tgccacaaac
      481 aggctatgat ataaagcttg atgagagttc aacgcaaaat tagcgaacta tatcataatt
      541 ttgcggaatt tttgccttga aaatatcgga gttgattttt ggatttttaa tttgattgtt
      601 tagattgatt ataacatcat tttcaaattc atctttatag gatatgcttt gaatttgctc
      661 ttgattgagt ttaattgtat aatttatatt atcatatttt gctacaagtt tatctttgtc
      721 tataagactt gcttttttga aaatttcatt aagatttgga atgttatcaa gatgagagaa
      781 aatgacttgt tctagatcgt gctctactat ggttacttga tttttgttga tataaatctc
      841 ttttttacta ggagtatcat aactccaata tgcttgatct ttactcagta taaaatgccc
      901 agaataagaa agtgtagagt ttttggattt cactatttgg gtaaaattgc ttgaaaaggt
      961 attaaaatta agatcaaggg caaaaagttg tcctataaaa ataaaaaata tcaagaatgt
     1021 ttttttcatt tattttcctt aaaaaaatat attttttatg tcattctagc taattttaat
     1081 taaataatcg ttataatgat agtttgaaaa atttataaag gtttaaaaat gtttttaaat
     1141 actttaaaag ccgtgtttgg cacaaaaaat gatcgtgaaa ttaagaaata tttcaagcgt
     1201 gtagcacaaa tcaatgcttt agaaggcaac tatcaaaatt taagcgatga tgaattaaaa
     1261 gccgaatttg caaaatttaa agagcaaatt ttaagcggag aaaaaaacga aaatgatgtt
     1321 ttaaatgatg tttttgctat agtcagagag acaggtaaga gaactttaaa tatgcgtcat
     1381 tttgatgtgc agttaatcgg tggtatggtt ttgcacgatg gaaaaatcgc agaaatgaaa
     1441 acaggagaag gtaaaactct tgtagcaacc ttacctgttg ttttaaatgc catgagtggc
     1501 aaaggcgtac atgtcgttac agtaaatgat tatctagcca aaagagatgc tgagcaaatg
     1561 agtgcgattt ataatttttt aggttttagt gttggcgtgg tgctttcttc tcaaaatagt
     1621 gatatagaac acaagcaagc ttatgattgt gatattactt atggaaccaa taatgagttt
     1681 ggttttgatt atttgcgtga taatatgaaa ttttcaaaag ctgaaaaagt tcaaagagag
     1741 cataattttg ttatcgtaga tgaagtagat agtattttaa ttgatgaggc aagaactccg
     1801 cttattatca gtggtcctac aaatcgtact ttagatggtt atattaaagc caatgaagta
     1861 gctaaacaaa tgcaaaaagg tgaagcagtt ttaccccctg caaaacctga gggtgatttt
     1921 gtagtagatg agaaaaatcg taatatttta attacagaag caggtattgc taaggctgaa
     1981 aaactttttg gcgtagaaaa tttatacagt cttgataatg ctatcttagc tcatcagctt
     2041 gatcaagcct taaaagcaca taatcttttt gaaaaagatg tgcattatgt tttaagaaat
     2101 aatgaagtta tcatcgttga cgaatttaca gggcgtttaa gcgaaggacg tcgttttagc
     2161 gaaggattgc atcaagcttt agaagctaaa gaaaatgtaa aaattcaaga agaaagccaa
     2221 actctagcag atattacttt tcaaaattat tttagaatgt acaataaact tgcaggtatg
     2281 acaggaactg cacaaacaga agcgactgaa ttttctcaaa tttatagttt agatgttatt
     2341 tctataccga caaatattcc tattaaaaga caagataaag atgatcttat ctataaaact
     2401 caaaatgaaa aattcaaagc tgtaattgaa gagattaaaa aagccaatgc taaaggtcag
     2461 cctgtacttg taggaaccgc aagtatagag cgcagtgaag tttttcacaa tatgcttgta
     2521 aaagagaaaa tccctcatca tgttttaaat gctaaaaatc acgagcaaga agctttgatt
     2581 atccaagatg caggtaaaaa aggtgctgta actatcgcta caaatatggc aggtcgtggt
     2641 gtagatataa aaatcgatga tgagattagg gctttgggtg ggctttatat catcggtaca
     2701 gaaagacatg aaagccgccg tattgataat caacttcgtg gtcgtgcagg aaggcagggt
     2761 gatcctggaa taagtcgttt ttatctaagt ttagaagata atcttttaag aatttttggt
     2821 ggggatcgta ttaaaagtat tatggatcgc ttgggcatag aagagggcga aagcatagaa
     2881 tcaagaatcg ttacaagagc ggttgaaaat gcgcaaaaaa aagttgaaag cttgcatttt
     2941 gaaagcagaa agcatttgtt agaatacgat gatgtagcaa atgaacaaag aaaaactatt
     3001 tatcgttatc gtaatgagct tttagatgaa aactatgata ttagagctaa aatttctcaa
     3061 aatatcgctg aatatagcgc aaatgtaatg aatgattata tgcttgacga aagcggttct
     3121 aatgtaaatt ttgaaaattt gaaagcaaaa attttgtatg aatgttcaac tcagattagt
     3181 gaaaaagatt ttgagaattt aagcgtcatt gaaatgcaag acaagctaag tcaaattctt
     3241 gaaaattctt ataatgaaaa gatgttaaga cttgagatta aagaattgcg taatatagag
     3301 cgtattttat atttgcaagt tttggataat gcttggagag agcatttgta tcaaatggat
     3361 attttaaaaa caggaatagg acttcgtgga tacaatcaaa aagatcctct tgtggaatat
     3421 aagaaagaaa gttataatct tttcttggag ttggtcaatc gtattaaatt tgatagtatt
     3481 aaactacttt ttagcgtgca atttaatcaa gaagaggcgc aaaatttaga aaataaagcc
     3541 aatgaagaaa atgaaaagct acttcaaagc tcagtagaaa tgggcgcaag cgaagataat
     3601 cttggcgaag ctgaatttaa aaaagttcca cgcaatgctc cttgtccttg cggaagtgga
     3661 aaaaaattta aagaatgcca tggaaaaagt ggtcctaagc aaggaatttt agcttgaata
     3721 aaagcgtttt aaaatattta ctttttaagt atttaagatt tgataaagag caacccttta
     3781 tcaatctttc tatgcttttg gcctttttag gagtttgtgt aggactttgc gttttgcttg
     3841 tagctatggc aattatgaat ggttttgata aagaatttga aaaacgcttt tttgtgatga
     3901 attatcctat tactattttg cctaaattct acgctcctgt aaatgatgaa tttatagatg
     3961 agttaagaaa aacatttcca aatttgttat ttagccctta tttaagcact caagttgttg
     4021 taaagggaga taatcgtttt gaaggtggtg tgctttttgg cgttaatttt aatgatgaaa
     4081 aaaaaataaa cgaagtggtt gctaaagctt taaaggatga gaatttaagt ggttttgata
     4141 tacttgtagg atcagcactt actgatgaat ttggtttgca taaaaatgac aaactttcac
     4201 ttattttttc aaatcttaat cctagtggat tttctttagt accgcaaact aaacgttttg
     4261 atgttaaagc gcgttttact tcagggcttg cattttatga taaagcttat atgtacacag
     4321 atgttgatgc attgaaaaaa gtacttggaa tacctaaaaa tccaaattat gatggaattc
     4381 atgtatatag cgataatgct tttaaggatg ttgaaaaaat taaatcttat ttaaaagatg
     4441 attatgctgt ggtgggttgg tgggagcaaa ataaaaattt tttttcagcc ttagaacttg
     4501 aaaaaagagt gctttttata gtgttgatgc ttattatttt ggttgcaagt ttaaatatag
     4561 taagttcttt attgatgata gtaatgaatc gtcgcagtga aatagcactt ttacttgctc
     4621 taggtgcaag caaaaatgag gtaaaaaaga gtttttttgc cttaggtatg cttattggtg
     4681 gtggtggtat gatagtgggt gtggtacttg cattttttgc tttatggctt ttgggaaatt
     4741 ttgatattgt aactttacct gttgatgttt atggaaccag taaattacca cttgatttat
     4801 ctttaatgga tttttcttta accattgtgg gtgctttaat aatcatagct ttatcatctt
     4861 tttatcctgc aaaaaaagca actcaaatta atattttaga tactttaaga aatgaataaa
     4921 ttgtaatttt ggagattttt attgtctttg tttactcaaa aaaataagaa ttttaaacct
     4981 ttaaaacctc tatcaaagtc aaaaataatc actaatttaa ttcttttgat tttattttta
     5041 atattgtttt gttattgtag ttttagtata agtgcttatc attttgattt tagcgcaatt
     5101 gcaacctata aagaaaaatt tcttcaaggt tttttaaata ctttaataat cagttttttt
     5161 tctttattgt tgagtataat tttgggtgga gttttttgtg ctttttcttt aagttcgatt
     5221 gtttttttaa gatttttatc tacattttac atagagcttg tcagaggaac ccctttacta
     5281 gtgcaggtat tattgatata ttatatcatt gcaaataatt taggacttga taatcgatat
     5341 gtggctggag ttattatttt atcatgtttt tctgctgctt acttagctga aatatttaga
     5401 gctggaattt taagtatttc tatatctcag cttgagagcg ctagggcttt agggttaaaa
     5461 gagatgcagg tttttgcgta tgtaattttt ccccaagctt taaaaaatat tttagcaccg
     5521 ctgagtggac aatttgcaaa tttaattaaa gatagttcct tattaagcgt tattgctgta
     5581 aatgaattaa cccaaagtgc gcaagagata aattcttata cttttgctac tcttgaagct
     5641 tatgtaattt tggctattac atatcttgtt ttgactttac ctataagtat attttctcgt
     5701 tatttggaga gaaaatgcca aaaatgattt aaaaaagctt gacaaataga gctaattttg
     5761 gcataatcac atttttattt cagaaaatgt ctcgttagct cagccggtag agcatctccc
     5821 ttttaaggag ggggccgttg gttcgaatcc aacacgggac accattata
//
LOCUS       DARGBD010000100         5726 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.100, whole genome shotgun sequence.
ACCESSION   DARGBD010000100 DARGBD010000000
VERSION     DARGBD010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5726
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.100"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1160
                     /locus_tag="SFZ04_001550"
     CDS             <1..1160
                     /locus_tag="SFZ04_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HEG8065792.1"
                     /translation="IEILNFILLGILSFCTALHYYFLSQDFPIFTSSLIDSEGISSLG
                     FIALALLVCILIFFFLKWQKNFNQKTSFMLFLLLILIESDKALANILLTLMRNSIIET
                     HAFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSLKIRKKNISKKQILDINYRKNEAKT
                     SLINRYFSSVFISCVISFCIVLYFFMVSSKPLTIDEPKEILPDKNGKFIFDIALLRDN
                     KLHRFAYISAEGKVIRFFLINKREDKDSPVAVFDACMICGDMGYIKKDGQLICISCNV
                     RIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDVIAGSNYFSQIKEIEVQDPVSKTKV
                     INTQAPFSYSYKGITYYFSNQNNYEEFKKDPTKYVEENEAQFLIQRRNDVG"
     gene            1147..2439
                     /locus_tag="SFZ04_001551"
     CDS             1147..2439
                     /locus_tag="SFZ04_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8065793.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWVKD
                     DSNEIMLDEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGAGAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            2429..3547
                     /locus_tag="SFZ04_001552"
     CDS             2429..3547
                     /locus_tag="SFZ04_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG8065794.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNIEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     SNGKNTKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKVKT
                     QAISNEFIDAKPISSVSLSEGLVLRKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            3544..4197
                     /locus_tag="SFZ04_001553"
     CDS             3544..4197
                     /locus_tag="SFZ04_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8065795.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            4194..4682
                     /locus_tag="SFZ04_001554"
     CDS             4194..4682
                     /locus_tag="SFZ04_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG8065796.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLTS
                     LL"
     gene            4643..5146
                     /gene="traF"
                     /locus_tag="SFZ04_001555"
     CDS             4643..5146
                     /gene="traF"
                     /locus_tag="SFZ04_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HEG8065797.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFAFVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(5155..5592)
                     /locus_tag="SFZ04_001556"
     CDS             complement(5155..5592)
                     /locus_tag="SFZ04_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HEG8065798.1"
                     /translation="MKKTILTILFLLTLTQAKEIQVYESPTCGCCDLWADYMKAKGYG
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIVWLLENKPKDVIGI
                     SAPDMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
BASE COUNT         1996 a          890 c          900 g         1940 t
ORIGIN      
        1 aaattgaaat tttaaatttt attttattgg gaattttaag tttttgcacc gctttgcatt
       61 attatttttt aagtcaagat ttccctattt ttactagctc tttaatcgat agcgaaggta
      121 taagttcttt aggttttatt gctttagcct tgcttgtttg tattttgatt ttcttctttt
      181 taaaatggca aaaaaatttt aatcaaaaaa caagctttat gctgttttta ctgcttatcc
      241 ttatagaaag cgataaagct ctagccaata tcttgcttac tttaatgcga aattccatca
      301 tagaaactca tgcttttttg gtgagttttg taggaaaaag taattatttt ggtgtttttg
      361 gaatttatgt ttatttaatt ttcatcactt ttttagcatt cttaagctta aaaattcgca
      421 aaaaaaatat aagcaaaaaa caaattttag atataaatta tcgcaaaaac gaagctaaaa
      481 caagtcttat taatcgctat ttttccagtg tttttatctc ctgtgttata agtttttgca
      541 ttgttttata cttttttatg gtaagctcta agcctttaac catagatgag cctaaagaaa
      601 ttttacccga taagaatggc aaatttatct ttgatatagc tcttttaagg gacaacaaac
      661 tccaccgctt tgcttatatc agtgctgaag gcaaagtgat aaggtttttt cttatcaaca
      721 aaagagaaga taaggattct cctgtagctg tttttgatgc ttgtatgatt tgtggagata
      781 tgggctatat caaaaaagat ggacaactca tttgcatttc ttgcaatgtg cgtattttct
      841 tgccaagtgt aggtaaaagc gggggttgca atcctatccc actcaaatac gaatacgatg
      901 gtaaaaaaat caccatagat gttaaagatg taatagcagg atctaattat tttagtcaaa
      961 tcaaagaaat tgaagtgcaa gatcctgtat caaaaacaaa ggttataaac acccaagctc
     1021 ctttttctta tagctataaa gggattactt attatttttc aaatcaaaac aactatgaag
     1081 aatttaaaaa agatcctaca aaatatgtag aagaaaacga agcccaattt ttaatccaaa
     1141 ggagaaatga tgttggctaa aatgattttt aactctatat ttaaaaacaa aattcaaaaa
     1201 tttttagcct ttcttacttg ttttttagcc acgcttttgc tctctactat gctaaatatt
     1261 accctaagta taggtgatga agtaactaaa caactcaaaa gctatggctc taatatcctt
     1321 gttttaccca aaggctcaag ccttagtata gaaataggta atgaacttta tgaaccctta
     1381 aaaaacaaaa actacctaga agaaaaaaat ttatatatga ttaaagacat ttattggcgt
     1441 aacaacatca ccgcacttgc tccttttttg gaaggtaaaa tcacaattga aaactcccaa
     1501 caaaaagcac ttatttatgg tacttatttt caaaaagcca taaaaattaa agatgatgat
     1561 gattttatca caggtataaa aagtctttat ccttatttag cagtgcaagg agaatgggta
     1621 aaagatgata gcaatgaaat catgctagac gaagactttg ctaaaaacaa taaattaaaa
     1681 ttaggagata ctatcaaact cataggagaa aacaatcaaa gcaaagaagc aaaaatcgta
     1741 ggcattttac ttcatgccaa tcctaaaatg tcaaataaaa tcatcgctcc tttaaattta
     1801 gctcaagatt tactcaacaa acaagggctt tactcaagtg cagaagtaag agcttttacc
     1861 atacctgaat cagccctttc tgaaaaagta cgtcgcatgg gagaagaaaa attagatcag
     1921 ttagaatatg acaaatggta ttgctcagct tatgtaggct caatcgctag tcaaattagc
     1981 gatggcttac caggtgctgg tgcaaaagct ctaaatgcta taagcgatgc tcaaagcttg
     2041 gtggttaaaa agatccaatc cttaatgggc attacttgca ttatttgtct tattgttgca
     2101 agcattgcga tttcaagtct aatgagttct gaaattcatc gcagaaagaa agaaatagga
     2161 cttttaaaag tacttggtgc taatactttt caaatttatc tcatctttgc tagtgaaaat
     2221 ttaatcgtag ctttatttgc tgctttattt ggctttattt ttggcacagc actttctcaa
     2281 atcatcagtc ttagtatttt tggatatttt attgatatag cctttatagc tttaccttta
     2341 agctttattt ttgcaggact tattgcctta cttggttgct tgcttcctat aaaaaatatc
     2401 acacaacttt cagctgcagg agtgctttat ggtagataag tttttcctca atgagctttt
     2461 taaaagcatt agcttttctt atcaaagact ttttattata gttttaagtg tttttatagg
     2521 agcacttact tgctcagctt ttttaaatat ttattttgat atcgacatca aactttctaa
     2581 agaattaaaa gcttatggag caaatgtaat gataagtccc aagcaggatg aaaattttat
     2641 ctccaatatt gagtatgaaa aaataaaaga aaatttaaag gctagagctt taactccttt
     2701 tttgtatgat tttttaaatt taggcagtac aagcggggtg gttttaggca ctgattttag
     2761 ggctttaaaa atcactaaac cttttttaga agttaaagaa ggaagctttt ctctaaatga
     2821 ttttgatgaa aattcagcct ttttaggagt taatttagcc aagcaactag gcctaaaagc
     2881 aggcaatgaa cttcaaattt ataatccaag caacggaaaa aacacaaaac ttaccataaa
     2941 aggcatactt tcaagcaatg atgaatttga tagcattgtt ttagctcctt taagcgtggt
     3001 gcaaaattta agcgatagag ccggtattaa ctatgctaat gctgtagttt atggaaattt
     3061 tgatgaagtt aaagtcaaaa cacaagcaat cagcaatgaa ttcatcgatg caaaacctat
     3121 atcttcagta tccttaagtg aaggtttagt gcttagaaaa atcaaagctt taatgttttt
     3181 aatcatactt gtagtattga tcatagttac tactagcgtt aatacaactt taagctctat
     3241 tatattttct cgcaaaaaag aaatcgcact gcgtttagcc ttgggtgcga aaaaaagtga
     3301 aatttttaaa ctttttgcta gtgaatgctt tatagtaagt ttttttgcta gtttaatcgg
     3361 agctttttgt ggaatatttt tagccaatgt ctttggttat ttgattttta attctagtat
     3421 tgattttaga tttatagctg tttttatagc cttaatcatt tctttgattt ttgccttttt
     3481 ggctgcattt tttcctataa aaagagcatt aaaaatcaat gtgtgtgaaa atttgaaagg
     3541 tgaatgatga aaaaagaact tattaaaata aacaatttaa ataaagaatt tggcaaagtt
     3601 aaagccttaa acaatatcaa cttaagcgtc tatgaaggag aatggcttgc catcatgggt
     3661 ccatcgggaa gtggaaaatc aacgctttta aacatactat cactcatgga tactccaagc
     3721 tctggagagt atatcttgga taatgaaaac ctagagcaaa tggatgaaga gcaaaaaatc
     3781 accttgcgtc gtgaaaaaat aggacttgtc tttcaacaat ttcatcttat cccctatctt
     3841 aacgctttag aaaatgttat gctctctcag tactatcact caagtgtaga tgaagaagat
     3901 gccaaaatgg ttcttgaaaa agtaggactt tcacatagac tcactcattt acctagccaa
     3961 ttaagtggcg gagaacaaca aagagtttgc atagcaagag ctttgatcaa caacccagag
     4021 cttttgctcg cagatgaacc cacaggaaat ttagatgaag ctaatgaaca aatcgttctt
     4081 caaaccttgc aaaaattaaa aaatgaaggc aaaaccatag ttttaatcac acacaatcct
     4141 gatttagcca aattcgcaga tcgaaccctt atcttacaac atggggtgtt aaaatgaaaa
     4201 aaagcctttt aatcttaagc attttgttct tgctcaatgc ttgttctttt gaaaattcaa
     4261 aagatactgg aaaagttgga gaaaaaagcg ctgaaatttc agctaaagat accttaggaa
     4321 aagctgtaaa acttgctgat gataatacaa gtttaaaagt cttagtcttt tttcaaaatg
     4381 gctgcccttc ttgcttaaaa gaactccctt ctttagatga attcatacaa aatcacccca
     4441 ataaaatcag cgtttatgct ataaattcca tcgataatgc caatgtggtt aaggttttag
     4501 ccgaacaatt tgactttaaa aatgtaaaag ttttaaaaga cgatcttaaa atcaccaatg
     4561 atcgttacgc tgtgtttgca acccctacta ccatcatcat taaagatgga atgataaaag
     4621 atagaatttt aggagaaaaa ccatgggaat ttttcgaatc caagcttact tctttgcttt
     4681 aattatagct ttattttttg tagcttgtga tagtggagaa aattttaaag ctttaaatag
     4741 tgataaaacc tataattttg cctacaatgg ttttgaaaaa agcctaaaac taaatgataa
     4801 agcacaaaat tttgccttcg tattcttcac aaaagattgc ggagtttgta aagaacaaat
     4861 tcctatttta cagaatttgg ctaaaaatta tgattttaat atctttgtgg ttttaggcga
     4921 tgcaaatgat gcaaacgatg caaaagcttg ggctgatgaa aaaggtttat ctaatttagc
     4981 aatgttttat gaaaaaagag cagctaaata cctttcaagt gccattgggg aaatatatgg
     5041 agtacctgtg cttagttttt tcaaagaagg aaaaatggat gaaaaattca taggcttaac
     5101 tccttatagc atacttgaaa aagaaatcaa aaaagtaaaa agctaaaatt tactttaaag
     5161 ctttttatct cctataaaat atccataaag ctcatagctt ccatcttttt tcatcaaaat
     5221 tacaggatat ttttcactat aaccttgttc cattcctggg cttccttgtg gcatgtcagg
     5281 agctgaaatt cctataacat ctttaggttt gttttcaagc aaccatacta tggcactttc
     5341 aggaacatgc ccttcaatag catagccttc gatcacaccc gtatggcaac tttgatactc
     5401 atcttttata cccatttttt ctttgatttt aagaaaatca ttggttttat gaacactaac
     5461 cccataaccc ttagctttca tataatcagc ccaaagatca caacagccac aagtaggact
     5521 ttcataaact tgtatttcct tagcttgcgt aagagtgagt aaaaaaagaa tggttaaaat
     5581 tgtttttttc ataattgcta tcctaagtaa aaaatatata ataatacttt tataaagtta
     5641 atatcatcac atttttaaca ctaaaaatga atttacaaaa atttaatcaa gaaaaagatt
     5701 tttaatgagt gctgattttg tcttta
//
LOCUS       DARGBD010000101         5698 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.101, whole genome shotgun sequence.
ACCESSION   DARGBD010000101 DARGBD010000000
VERSION     DARGBD010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5698
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.101"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            227..1204
                     /locus_tag="SFZ04_001557"
     CDS             227..1204
                     /locus_tag="SFZ04_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HEG8065799.1"
                     /translation="MLKRLALLIALSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1205..2191
                     /locus_tag="SFZ04_001558"
     CDS             1205..2191
                     /locus_tag="SFZ04_001558"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEG8065800.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTTAKDMEVATYDLGYADGLFRYNGKGELVLGNGKT
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2194..2661
                     /locus_tag="SFZ04_001559"
     CDS             2194..2661
                     /locus_tag="SFZ04_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEG8065801.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            2765..4231
                     /locus_tag="SFZ04_001560"
     CDS             2765..4231
                     /locus_tag="SFZ04_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEG8065802.1"
                     /translation="MKLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIILTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNMQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4259..4987)
                     /locus_tag="SFZ04_001561"
     CDS             complement(4259..4987)
                     /locus_tag="SFZ04_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG8065803.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(4980..5697)
                     /locus_tag="SFZ04_001562"
                     /pseudo
     CDS             complement(4980..5697)
                     /locus_tag="SFZ04_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650248.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
BASE COUNT         1961 a          732 c          947 g         2058 t
ORIGIN      
        1 tcatataatg tataaaaagc taaaaacaaa atgcctaaaa aagacattcc tataaaaaaa
       61 tttcttatca ttatagacaa ccttttaaaa caagccttta tgatttgtaa aaattatatc
      121 ataaataagg ctgcattgtt aatataatta atatttttta agaaaaaaaa tattataatc
      181 acaaacattt ttgacttaaa aaatttgaaa tacctaagga aaaacattgt taaaacgact
      241 tgctttatta attgcacttt cttcattgat gttgcatgcc tcagatcttg ttaaaattta
      301 tcttaatcaa ggattagatg ctgttggtgt agcgattgaa aaagaattaa ctcaaaagga
      361 tttttggtta agtgaaatag gagataaaaa tatttcactt ggatactatg atgataatgt
      421 tgctatcgtg cttacaaata aaacagataa aattctccgt gtttattctt acgaggacgg
      481 aaaaataaga aaagattttg aacaaaaaga aataataact ggattaatgg gtgataaaaa
      541 aatagaagga gatttgaaaa cgccagtagg tttttatgag ttaggccgta agtttaatcc
      601 aggtgatcct tattatggtc cctttgcttt tgccacaact tatccaaatt tacttgataa
      661 agtacaagga aaaacaggtg gtggtatttg gatccatggc tatcctttag atggttctag
      721 acttgatgaa tttaaaacaa gagggtgtat tgctttattt aataataatt tggagaaatt
      781 tgcaaaagtt gtgcaagata aaaaagtttt tgttatgaca gaagaaaaag aaaaaattag
      841 agctaaaaag gatcaaatcg ctagtttatt ggctgatctt tttacatgga aactagcttg
      901 gacaaatagt gacactaatg cctatttaag tttttatgat gagcaagaat ttaaacgttt
      961 tgataaaatg aaatttgaac agtttgcttc catgaaaaaa tctatttttt ctcgtaaaga
     1021 agataaaaag attaaatttt cagatattaa tatcagccct tatccgaatt tagaaaatga
     1081 aactatgtat agaatttcat tttatgagga ttattacact aaaaactatc agtttagagg
     1141 cgataaaatt ttatacgtta agatagatag taaaggtaaa atgaaaattt tagcagagca
     1201 ataaatgtct ttaataaaaa ttgatcaaaa agcttatgaa tataatttaa gacatattgc
     1261 taaaaaaata gggagttttc aaagattaat ttgtgttttt aaagataatg catatggaca
     1321 tggagctaag cttttagctc cattagccaa aaatttagga gtttcttttg ttgctgttaa
     1381 gagtgaagaa gaagctcgag aaatcgaaga attttttgag aatatattaa tactatcaca
     1441 tcgtcctcat ggtaatgaaa attctcgatt tatttatgct ttaaatgaca tttctcaagt
     1501 aaaaaattac aagcaagata taaaaataca tctaaaaata gatacaggca tgcatcgcaa
     1561 tggaatttgt gtagaaaatt tagagcatgc tataaatctt attcaaggta gtgatttaaa
     1621 acttactgga atgtttacac attttgctag tgcagatgaa atggatggaa gtttttttgt
     1681 tcaaaaagaa aattttcaaa aagctaaaaa gatagtaaaa aaatattttt caaatttatt
     1741 atttcattcg tataattctg cagcattatt tagagggaaa attcctgaag atgaatattg
     1801 tagagttggg cttgttcaat ttggatatgg ggattcaaat ttaaaaagag ttttaagttt
     1861 gtatgctcat agattaagtc aaaggatttt acaaaaagga cagagcatag gatatggagg
     1921 catttttact actgcaaagg atatggaagt agcaacttat gatttgggtt atgctgatgg
     1981 tcttttccgt tacaatggaa aaggggagtt ggtgcttgga aatggaaaaa caatgcttgg
     2041 aaagatgtca atggatagtt tttcttgtga aaattctggt gaggaaattt gcgtgtttaa
     2101 agatgctgat atttgggctg atttttttca tactattaac tatgaaattt tagtaaaatt
     2161 aaatcctaat attcaaagag ttctagtata aatatgttta atatagtttt agttcaccct
     2221 agaataccgc aaaatacagg tagtataggt agaatgtgct ttaatgctgg ttttaaactt
     2281 catattgtta aaccaactgt ttttgatatt tcacaaaagg ctgttagaag ggcaggactt
     2341 gattactggg ataaattaga gcctattatt tgggagaatc ttgaagaatt tttgaatgaa
     2401 aatatgattt ataaaaatcg cttttttttc gcaacaacta agagtcaaaa agcttatttt
     2461 gatgcagaat ttcaaaaaaa tgatttctta ttctttggaa gtgagagtta tggtttgcct
     2521 atggaattaa tgcaattaaa ctgggaaaat gctataacta tacctatgaa atcttatgga
     2581 agaagtttaa atttagccac aagcgttggt ataatctctt atgaagcttt aagacaaaat
     2641 tttagaaatt ttgcttctta aaagtttcaa atttacacaa tagcttaaaa caaataaaat
     2701 cataaagtcc tttttataaa aattatgtta aagtaaaatt tagattattt tttgaggagt
     2761 ttggatgaaa ttagatatta tgctagattt tgccaataaa gcgtctgata ttatagctaa
     2821 taagattgtc ccaaatacag acattattat ggtagtttta cttattgttt gtgggcttta
     2881 ttatagtttt ttaactcgct ttgttcagtt tcgtatgttg agttctgtat ttaaaattct
     2941 tacagaaaaa aacgaaggac acgctaaaga acatatttca ccttttcaag cattaatgat
     3001 ctcaactgct tctagagttg gtataggaaa tattgctgga atttctttgg cattggctac
     3061 aggtggagct ggtgctttat tttggatgtg ggttatggca ttttttggtg gtgcctcagc
     3121 atttgctgaa agtaccttag ctcaagttta caaatcaaaa gatgatacag gcgggtttaa
     3181 aggtggtcca gcttattata taaaaaaagc cttaggctca catttttttg gagctttttt
     3241 tgcttttatt cttattatta cttatgctta tggatttaat ggacttcaaa gtcaaacaat
     3301 gacttcgtct tttaaagttt attatgatat gtttaatcca aatgctgctg tagattttgc
     3361 atcaagttct tggccaatga ttattggtat tattttaact atttttggtg catggatgtt
     3421 tttttctcac catactaaaa taggtaaaat tagttcttta attgttcctt ttatggcttt
     3481 agcttatgtt ttacttgccg tgattgctgt tttaatgaat tttgataaaa ttccttctgt
     3541 gattcatatg attttacaaa gtgcttttga ttttaaagcg atttttggtg gttttgctgg
     3601 ttctgctttg gttataggga ttaaaagagg acttttttca aacgaagcgg gtatgggctc
     3661 ggcacctaat gcagctgcag cagctttgac aagtcatcca gctaaacaag gtgttataca
     3721 agccttttca gttttaattg atgttgttgt ttgtacaagt tctggatttt tagttctttt
     3781 ttctatggca tatttaggac ttggagaaag taaaattgat ggtggaatgc ctttagttca
     3841 agaagctatg cgtgagtatt acggtagctt tggaatccat tttattacta tagctattgt
     3901 tctttttgca ataacttctt taataggaaa ttattattat gctcaagcta atgttaaata
     3961 tttaacaaat tccaaatttg taatgaattt gtttagaatt acagctgtgg ctatgatttt
     4021 tataggctca caaatgaatt taaaacttgc ttggaatttg gctgatttga ctatggcttt
     4081 catggcaacg acaaatatta tatctttatt gcttttaggt ggtatagtaa ataaagtttt
     4141 aaaagatttt aatatgcaac aaaaatctgg tatagatcct aaatttaatg ctagcaaact
     4201 tggaattaaa aacgctgaat gttgggatta aaattcataa gccttagtgg cttatgaatt
     4261 aatgatttaa aaccttgttt aaaaattctc tcaatctttc attgctagga ttttcaaata
     4321 cttctttagg gcttgcatca acagcaattt ttcctttatc cataaaaaat atacgattgg
     4381 caacatttct agcaaagccc atttcatgag ttactacaag catagttaaa ccttcttttg
     4441 caacatcttt cataatgctt agaacctcgc ctatcatttc aggatctaga gctgaagtag
     4501 gttcatcaaa taaaataaca tcaggattca tcatcaagct tctagcaata gctatgcgtt
     4561 gtttttgtcc gccagaaagc ttatggggca ttatattttc tttgtctgct aaacccacct
     4621 tagcaagaag taattttgct ttttttatgg cttcttcttg acttaaaatt cctgttttaa
     4681 tgggcgttaa acataaattt tccataacat ttttattggc aaaaagatta aaatgctgaa
     4741 ataccatgct aactttttgc ctgatcttat taatatcaat ttctttatca agtatgtttt
     4801 gcttattgat taaaatttcc ccactatcag ctagttctaa gcgattgatg cagcgtaaaa
     4861 atgtactttt tccgcctcca cttggaccta tgatagctat tacatcgcct tttgagattg
     4921 tagtgttaat attttttaaa acttctaatt ctccatattt tttttgtaaa tttttaactt
     4981 caatcatttt tattcatcct aagttcaagt ttttttgcaa aatagctaaa aatttttaca
     5041 cttacataat aaacaagtcc agtgaaaata ataggttttg gattgtaaag tacggcttgc
     5101 aagctttgac tttgcatggt aatatcaata acactaataa atcctacaac agaagtttcc
     5161 ttaaataaag aaataaattc attagctaat gcaggtagaa tgtttttagt agcctgtgga
     5221 agaataattt ctttcattga agttttgtaa tcaagtccca ttgctcttgc agcttccatt
     5281 tgtcctatta atgccacttc ttacaatttc tgctatataa gccgagctat taagtcctag
     5341 tgcaagaatg gctgcataaa ggttatctat aaaagtaaaa attacaaaag caaaaatcat
     5401 caattgtaaa attactggtg ttcctcgtat aatgtctata tattcatcta taataaaatt
     5461 aagcgtttta aatttagaga agtgtaaaat agctaaacta aaaccaataa tcactccgat
     5521 aataacagcg caagcagtta ataaaagtgt aataagatag ctttttaaat aagcttttgc
     5581 attttctgta tagccatagc ttacaactcc actaggatct tgaattttta atatttctat
     5641 tgggaaagaa aaatagcccc ataaaataat aataacaaaa aaaacaaaaa ttcttata
//
LOCUS       DARGBD010000102         5695 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.102, whole genome shotgun sequence.
ACCESSION   DARGBD010000102 DARGBD010000000
VERSION     DARGBD010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5695
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.102"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            95..1294
                     /locus_tag="SFZ04_001563"
                     /pseudo
     CDS             95..1294
                     /locus_tag="SFZ04_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
     gene            1355..5128
                     /locus_tag="SFZ04_001564"
     CDS             1355..5128
                     /locus_tag="SFZ04_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HEG8065804.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKNEIDLAISKDEFSKYLEVFIEAKKPN
                     SKEFITHAKVNSKALHEAILYYFRNRQLSFSLKFIIITDFYKFYIFKISEFEELFYKS
                     PSFLKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     KLASIYKTFHRDFLLSEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESK
                     EEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLG
                     NVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKDISELRKSLRKE
                     DKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILIT
                     GRKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIE
                     LLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLNHYPNIKERMGKYK
                     RIVKDYKEGFYTDKSHINQEIKNLKISFKNFCFADKFKKEMKSFNDKCEKYSKKYGNF
                     LAVDDENLKFFVSANLTLFDFDEKEATKEFANLKKEYDNIFNLESNHPFEWRFEFPEI
                     LDDDGNFKGFDLIIGNPPYIRQEELKELKPHLAKNYKVYKGTSDIYTYFYELGFNVLK
                     DRGGVLSYITSNKYTRAGYGEALREFLLKNVKVLEYTDLNGIKVFDSATVDTSILCFE
                     KSKSKDNKFKYLALSNEILKTCAYDIGLYKDFAEFSQNSLSKESFTFSDENTSALKAK
                     IERIGTPLKEWQGLNIYRGILTGYNEAFIITTEKRNEILANCKDEAEKERTAKLIRKM
                     LRGRDIKRYSYEWAGLWVIFIPWHFPNVEKPKTMLENEQDLKEQYPSLYKHLLSHKER
                     LSKRNKEETGIRYEWYCLQRWGANYYQEFEKEKLGWQRITQEPSFILERECILLDSMA
                     FMVANSKNELKYLLGFLNSSLIFYYFKNIGHLYSDKGFLLSNQYVEKFPIPKINSKNQ
                     KIADELINLVDEILKAKEQDKNANTQELENKINSLVYKLYNLTEEEIKIIEGR"
     gene            5130..>5695
                     /locus_tag="SFZ04_001565"
     CDS             5130..>5695
                     /locus_tag="SFZ04_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEG8065805.1"
                     /translation="MKYKWIVKNTYIDFKLNNLYMLINPSDKIYLEEDVCYYLEIYIK
                     YRIFNNCILVCDMLDNWWKLISSTLHLDKSHIKYNYLSNTFIVSDFELGIKLESNLLT
                     KFNFEFYNGLILNQLSITNGLSLKRENYNKSLKFSNCKFNKEFCIARINISKQIVFEN
                     IYFLENVFIEWVNFNENSCLKFFKCNFK"
BASE COUNT         2330 a          694 c          860 g         1811 t
ORIGIN      
        1 cttaacttgc ctataaaatt aataatcagt ttttttagtt tgtaattaaa aatttattta
       61 catgtaaaat tgtataaaat ttggaaagta atacatggaa aaatttattg aaaggttgct
      121 tgaagaagat attaaatttg aaaaagatgt gaataatggt ttgagtgata taaatatatt
      181 tgatgctttg aatattgaaa caaaagaaaa ttatcattct aaatttatag cttatttaat
      241 aaataaggat cattatcaaa aaaattttgc aaaggtattt ttatagaaaa acttggtaag
      301 agtttagtaa atacgaaatt tgaaaattta aacatagaaa atataaaaag cgtagaaaca
      361 gaagcctgca taaaagataa tagaaggata gatattttaa taacattaag tgataaaaga
      421 tatattataa tagaaaataa aatttatgca aaagatcaaa aaaatcaatt gaaagattat
      481 attaattttg taagaaaaaa tatcaaaaat ataaaagatt gttataaaaa catattgact
      541 atatatttgc atcaagatga gtgtgctagt cctagtgatt atagtttggg aaattttaca
      601 atggtatatg acagatgagt atactcaaag agatgatgta ttagaattta tttttcaaga
      661 caatataaaa atgcaaaatt taaaaaatgc gatgatttta tatagatata acaaaaataa
      721 attagagctt aaaaatttaa acgaacaaga ttataaaaaa gccaaaagta ttatccagca
      781 taaatggagc aacatctgcg aatatataat agaagaattt tttgatagtt ttgaacacaa
      841 ggaaattaaa ataggtgata taacttttat cggcaataaa atagaagaaa atcgtgttaa
      901 tcatggtgta tttatatttt atcctattga ttataagaat gaaagcatat atccatgtct
      961 atatatttat tttaaaaaaa attactatga tattattggt ttgacatttg aaatttcaaa
     1021 taatgatgaa gaagatatag aaaatgaaaa atataaagaa tgtttaaaat tatttaaaga
     1081 tgtaaaagaa gaaaatgtta gaaaatatca aaatcactat tattgtgata aattaataaa
     1141 caatgaaaaa ttagaaggag aatacgcttt tatttattgg ttgattgaaa atcaaaattc
     1201 taaaaaagat tttattcaaa ttttaaatga tttttttatt aaaaaaccta tacaggaagc
     1261 atataaaggt attaatgata tattaaattc ttaaaaaatt ttatataaaa gtaaaatttg
     1321 ataaaataca aaatattttt tataaaggtt aaaaatgcat ttcactttgc taaatgaaaa
     1381 agattttttc aacccatact accgcaaaaa gcaaatcatg caaaatgaat ttgatatatt
     1441 taacaaggct ttaatgcaat atctagaaag acttgaaagt tcgcaaagtg aaaatgaaga
     1501 ttatcttgta gctaacgcac ttagtccatt tttaactatg ttaaatttca aaacccatat
     1561 aaaaaccaag caaaaaggca aaaatgagat tgacttagct atctctaaag atgagtttag
     1621 taaatactta gaagttttca tcgaggctaa aaagccaaat tcaaaagaat ttatcactca
     1681 cgcaaaggta aattctaaag ccttgcatga ggctattttg tattatttta gaaatagaca
     1741 gcttagtttt agcttaaaat ttattatcat cacagacttt tataaatttt acatttttaa
     1801 aattagtgag tttgaagagc ttttttataa aagtccaagt tttttaaaac tttttgaaga
     1861 attttgcaac ccaaattcac ttttcaaagg caataccgaa gagttttata aagaagtagc
     1921 taaactcata gaaaattcca aagaaaattt aaaaggcttt ttgattgact tgacattttt
     1981 aaaagacaaa caaaaatcaa attttaaaaa gctagcaagt atttataaaa cttttcatag
     2041 agactttttg ttaagtgagt ttaaccccaa cgatgcaaat tcactcaaca acgcttttta
     2101 caaagagctt ttatatatct tagggctttg tgagagcaaa caaaactcaa aactcatcat
     2161 cgcaaaaagt gaagaaagca aagaagagca aggcactttc tacaccgcta taaattctaa
     2221 gcttaaagaa gaaaattttg aaaccatctt aaaacttttg atcttatggc ttaatcgcat
     2281 tttgttttta aagcttatag agtcaaattt ggtgcgtttt aatgatgata aaaatttgaa
     2341 atttttaaat ttcaaaaaaa tccctgattt tgacaagctt agcgaacttt tctttgaagt
     2401 tttagccaaa gaaaaaagca cgcgaaagaa aagcgaattt gcttatctgc cttatctaaa
     2461 ttcttctttg tttgaaaaac aaagcataga aaacacgctt gaaatttcaa gcttaagtaa
     2521 tgacttaaag cttttttact ataaaaacac cgtgctaaaa gatgataaat gcaaggctaa
     2581 aaaaggacaa gtggggcttt tagaatactt gtttgaattt ttggatagtt ttgattttgg
     2641 tagcgatgat gagcaaagcg aaattttaag ccaaaaagaa ctcataagtt caagtgtttt
     2701 aggaaatgtg tttgaaaaac tcaatggcta caaagaagga agcttttaca cgccaagctt
     2761 tatcacttct tatatgtgca aagaaagcat cacaaaagtt gtgcttgata aattcaacgc
     2821 tcaatttgat cttgatgcta aagatataag cgaactaaga aagtctttaa gaaaagaaga
     2881 caaaaaagca caaaaagagc ttttaaactc tataaaaatt tgcgatcctg cggtgggaag
     2941 cgggcatttt ttagtttctg ctttaaatgt tatgctaagc atttatgatg agttaaatct
     3001 ttttgatgaa gaattttatc tagaagtgca aaacgatgaa attctcatca cgggtagaaa
     3061 aggcgagttt atagagtata aacgcccaag cacgcctaaa gataaagccc atcttatcca
     3121 gcaagaactt tttcatacca aaaaagacat catagaaaac aacctttttg gagtcgatat
     3181 caaccctaac tcatgcgaga tcaccaagct aaggctttgg atagagcttt taaaacacag
     3241 tttttatcaa agctttgatg atgaaaatta tcacgatctt aaaacattgc caaacatcga
     3301 tataaacata aaatgcggaa attctttggt atcttacttt gaaacaggca aaagcctaaa
     3361 ccactatcct aacatcaaag aacgtatggg caaatacaaa cgcatagtaa aagactataa
     3421 agaaggcttt tacacggata aaagccacat caaccaagag ataaaaaatc tcaaaatttc
     3481 ttttaaaaat ttctgctttg cagataaatt taaaaaagaa atgaaaagct ttaacgataa
     3541 atgtgaaaaa tactctaaaa aatacggaaa tttcttagcc gtagatgatg aaaatttgaa
     3601 attctttgtt agtgcgaatt tgactctttt tgactttgat gaaaaagaag ccacaaaaga
     3661 atttgcaaat cttaaaaaag aatacgacaa tatcttcaac ctagaaagca atcatccttt
     3721 tgaatggcgt tttgaattcc ctgaaatttt ggacgatgat ggaaatttca aaggctttga
     3781 tctcatcatc ggcaatccac cttatataag acaagaagag cttaaagaac tcaagcccca
     3841 tttagctaaa aattataagg tttataaagg cacgagcgat atttatactt atttttatga
     3901 actaggattt aatgttttaa aagatagggg gggggtattg agctatatca cttctaacaa
     3961 atacacgcgt gcaggatatg gggaagcttt gcgtgaattt ttgcttaaaa atgttaaggt
     4021 tttagaatac accgatttaa atggcataaa agtttttgat agtgctacgg tagatacttc
     4081 tatactttgt tttgaaaaat caaaaagcaa agataataaa ttcaaatacc ttgccctaag
     4141 caatgaaatt ttaaaaactt gtgcttatga cattggctta tataaggact ttgcagaatt
     4201 ttcgcaaaat tctttaagca aagaaagctt cacttttagc gatgagaata ctagtgcctt
     4261 aaaggctaag atagaacgca taggaactcc gcttaaagaa tggcaaggac ttaatatata
     4321 tcgtggaatt ttaacaggct ataatgaagc ctttatcatc accactgaaa aaagaaatga
     4381 aattttagca aattgcaaag atgaagccga aaaagaacgc accgctaaac tcatacgcaa
     4441 aatgctacgc ggacgcgata taaaaagata tagttacgag tgggcgggac tttgggtgat
     4501 atttatacct tggcattttc caaatgttga aaaaccaaag acaatgctag aaaatgaaca
     4561 agatttaaaa gaacaatatc cgagcttata taagcacttg ttgtctcata aagaaagatt
     4621 atctaaaaga aataaagaag aaacaggaat tcgttatgaa tggtattgtt tgcaaagatg
     4681 gggagcaaac tattatcaag aatttgaaaa agaaaagcta ggttggcaaa gaataacaca
     4741 agagccaagt tttatcttgg aaagagaatg tattttgtta gactctatgg cttttatggt
     4801 agcaaattct aaaaatgaac tcaaatatct tttagggttt ttaaattcta gtttgatatt
     4861 ttattatttt aaaaatatag gacatttgta ttctgacaaa ggctttttat tatcaaatca
     4921 atatgtagaa aagtttccta taccaaaaat aaattctaaa aatcaaaaaa tagccgatga
     4981 gcttataaat ttagtcgatg aaattttaaa agccaaagaa caagacaaaa acgcaaacac
     5041 ccaagagtta gaaaataaaa tcaattcttt ggtttataaa ctctataact taaccgaaga
     5101 agaaataaaa ataattgaag gaagatagca tgaaatataa atggatagtt aaaaatactt
     5161 atattgactt caagcttaat aatttatata tgctaattaa cccttcagat aaaatctatc
     5221 ttgaagaaga tgtgtgttat tatcttgaaa tttacataaa atatagaatt tttaacaatt
     5281 gtattttagt ttgtgatatg ttggataatt ggtggaaatt gatttcttca actcttcatt
     5341 tagataaaag tcatataaaa tataactatc tttcaaatac atttattgta agtgattttg
     5401 agcttggaat taaactagaa tctaatttgc taacaaaatt taattttgaa ttttataatg
     5461 gattgattct caatcaatta tcaattacca atggactatc ccttaaaaga gaaaactata
     5521 ataaatcttt gaaattttca aattgtaaat ttaataaaga gttttgtatc gctagaatta
     5581 atattagcaa acaaattgtt tttgaaaata tatactttct cgaaaatgtc tttattgaat
     5641 gggtaaattt taatgaaaat tcatgcctaa agttttttaa atgcaatttt aaaaa
//
LOCUS       DARGBD010000103         5578 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.103, whole genome shotgun sequence.
ACCESSION   DARGBD010000103 DARGBD010000000
VERSION     DARGBD010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5578
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.103"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            45..2201
                     /locus_tag="SFZ04_001566"
     CDS             45..2201
                     /locus_tag="SFZ04_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG8065806.1"
                     /translation="MHPNKKFYKLFKLSLFALLLITNLNAQESNEAINLQKVVVSATG
                     FEQDADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGNKS
                     NIAVKVMIDGRAINVLDNSHGVTPLNSINLDNVERIEIIPGGGSVLYGNGTRGGVINI
                     ITKKQKSDAFAINLKSSTYNHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQKGY
                     NEKGYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKTQAQSNPTQKGNSDNITQ
                     INRPEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDVSTMSYRGMSLPVYQNGSGFED
                     TLTGISLKNKLNYANNSYFIFGYEFANHDAKRKSLVYYSAAPIINYHRMTTLMDMTKQ
                     SHSIFALNSHNFNEFFTLSGGARYEFSTYNTNRSYRNEMSMNGRPPSSNPMITDSTTL
                     FDTDKNTNNFAFEITPNFKYSDTGNLYLKYERGFVSPTPAQFVNRNNNTSNGIPPYYS
                     SNLKAEIFDTFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNID
                     QTRRLGVELSLSQNFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYA
                     WNKNFSNFIDLTYFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAG
                     IRNLFDKRYYTYQDSINDQYLVGNGRNYYVEFKYAF"
     gene            2176..3162
                     /locus_tag="SFZ04_001567"
     CDS             2176..3162
                     /locus_tag="SFZ04_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG8065807.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYNNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            3162..3938
                     /locus_tag="SFZ04_001568"
     CDS             3162..3938
                     /locus_tag="SFZ04_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8065808.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLNPNKGEISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKKFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKRVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIVYKNSKPYILALKEKK"
     gene            3935..4741
                     /locus_tag="SFZ04_001569"
     CDS             3935..4741
                     /locus_tag="SFZ04_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8065809.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFNQKFKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(4738..>5578)
                     /locus_tag="SFZ04_001570"
     CDS             complement(4738..>5578)
                     /locus_tag="SFZ04_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HEG8065810.1"
                     /translation="YIELSDICGLKCDFCPSQKGIRGVMSEEKFQNLAYEISNKAELF
                     TFHLLGDPLLLPNLENYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIHQINISL
                     MSFLSQSNISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNLKIYEFL
                     AKEFEAKIDANLSKNRLQRHILLYQNKLFKWPNLKDEPLYKKGKCHALKEQIGILSDG
                     SLVPCCLDTKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTCEFFKAR
                     LGD"
BASE COUNT         1987 a          832 c          842 g         1917 t
ORIGIN      
        1 tatgatataa attatcatta tttattttat ttaaggagta aaatttgcac ccaaataaaa
       61 agttttataa gttatttaag ttatctttat ttgcattatt actaataact aatttaaatg
      121 cacaagaatc aaatgaagct atcaatctac aaaaagttgt tgttagtgca acaggttttg
      181 aacaagatgc agactcaaat ttacgcaatg taatcagcat tgaaggcaaa gatctgcaaa
      241 ataaaggtta tgtttcctta gaacaagcct tagaaagaat ttcgggcatt agttttgtaa
      301 attttggact tggacgcaat atagacatgc gtggacaagg aaataagtcc aatatagctg
      361 taaaagttat gatcgatggg cgtgctatta atgttcttga taattcccat ggtgtaaccc
      421 cgctaaatag tatcaattta gataatgtag aacgcataga aatcatacct gggggtgggt
      481 ctgtgcttta tggaaatggt actagagggg gtgtgattaa tatcattaca aaaaaacaaa
      541 aatcagatgc ttttgctata aatttaaaaa gcagtaccta taatcatggt ggactaggtg
      601 gaaatttagg tatcaatggc gccaaacaaa taaatgaaaa tttagctttt agctttgata
      661 tacaaagttt taaccttgat ggatatcaaa aaggttataa tgaaaaaggt tattttatta
      721 acacaaaaac ctatattgat atcaatgata atagcgactt aactttgggt tataattatt
      781 ttaaaagcaa aaataccagc agtggctatc taacaaaaac acaagctcaa agcaatccaa
      841 ctcaaaaagg taatagtgac aatatcacac aaatcaatcg ccctgaaatt tctttggatt
      901 atcattacta ttttgatgat atatgggaat ttaacctaga agctttttgg caaaatcaaa
      961 agatcaatta tctaaaagat gtttctacaa tgagttatag aggtatgagt cttcctgtat
     1021 atcaaaatgg aagtggtttt gaagacacgc ttacagggat aagtttaaaa aacaaactaa
     1081 attatgcaaa taattcttat tttatttttg gttatgaatt tgcaaaccat gatgcaaaaa
     1141 gaaagagttt ggtgtattat agcgctgcac ctattataaa ctatcatagg atgacaactt
     1201 taatggatat gactaaacaa agccattcta ttttcgctct taattctcat aattttaatg
     1261 aatttttcac tttatccggt ggagctagat atgaatttag cacttataat accaatagat
     1321 cttatagaaa tgaaatgagt atgaacggaa gaccgccatc atcaaatcct atgatcacag
     1381 actcaacaac cctttttgat accgataaaa acaccaataa ttttgctttt gaaatcaccc
     1441 ctaactttaa atactctgac acaggcaatc tttatcttaa atacgaaaga ggttttgttt
     1501 ctcctacacc tgctcagttt gtcaatcgca ataacaacac tagtaatgga ataccaccct
     1561 attattcatc gaacctaaaa gccgagatct ttgatacctt tgaactagga attgatgatt
     1621 tttggtggga tttttacggc tttaatctaa ctttatttta cactctaagc aaagatgaaa
     1681 tttcttatct tggaaaccct cattctacta gtggatcttg gtggaaatat tataatatag
     1741 atcaaactcg ccgtttagga gtagaattaa gcctgagtca aaatttttta gatgatgatt
     1801 taatctttag agaaagtcta acttatcttg atgctaaaat ttctaaaggt gttaatgacg
     1861 gcatgagaat tccttatgtt tcaaaaatca aagccacagc tgggcttgaa tacgcttgga
     1921 ataaaaattt ctcaaatttt attgatttaa cctatttttc tagagcaaaa gatggtggca
     1981 ctatagatga aaatacagga aaaatgtcta aaaattcttg gataagggat tattttttaa
     2041 cagatattgg catgaaatat aattataaaa aattacaaat tttagcagga attcgcaatc
     2101 ttttcgataa aagatactac acctatcaag acagtataaa tgatcaatac ctagttggaa
     2161 atggcagaaa ctactatgtt gaatttaaat acgcattcta aaattttagt gattataggg
     2221 cttttggtag cttatataat cgcttctttt acagcacttt gcttaggaga tgagaattta
     2281 aacccaaaag agcttttttc atatatcttt agccaagatg aaattttaag acaaataatc
     2341 atagatggac gcttaccacg gattataatg gcgattttaa tcggtatgct tttagctagt
     2401 agtggggcta tcactcaaaa tgtattttca aatcctatag ctgatcctta tatcataggt
     2461 atagcttctg cggcaacctt tggagcggtt ttggcgtatt tgttaaaatt gaatgattat
     2521 tattatggaa ttttaggttt tgtttgctct gccttttttg ccctaggagt ttttaaaatt
     2581 tcttctaaag cttctatagc aactttactc attatcggca tagcagcttc atctttttta
     2641 ggggctttca cttctttttt cacttatctt ataggcgagg attcttttaa aatagtcgct
     2701 tggcttatgg gaaatatagg caatgcttct tggtttcgtg taggaatttt aatcttgcct
     2761 ttaatttttt gtttgtttta tttttacgct cataaaaacg aattaaacat acttttaagc
     2821 ggagatgatg aagctagaaa tctaggggta aatgctcaaa aattaaagat aaatttactc
     2881 attgtctcat ccttggctgt atcttttgcg gttgctttta gcggacttat aggctttgtt
     2941 ggactcatca ttcctcatac tataagactt ttgcttaaaa attataataa tgccttagtt
     3001 atccctttat gtacagcatt tggaggatta tttttactta tttgtgatac tttagcaaga
     3061 actcttttag ctcctgtgca aattccgatt ggaattttaa ctgcattttt tggagctcct
     3121 atttttttat acttggcttt aagtgctagg agatttttat aatgctaaaa atacatgatt
     3181 taagctttgc ttatcaccaa aaagatttac taaaaaacat tcatttagaa cttaaaaatc
     3241 aggcttttat aggaatttta gggccaaatg gctcaggtaa aagcactctt ttaaaactta
     3301 tacttaaaaa tttaaaccca aataaaggag aaataagtct ttttaacaca aatatcaagg
     3361 atttttctct taaggaattt gccaaaattt gcggctttgt gcctcaaaaa tcagaattaa
     3421 acaccccttt aaaagtcata gatgtgcttt taatgagtaa atatgcgaat ttaaaacacg
     3481 cttttagttc ttattctaaa gaagatattt tagaaattaa aaaatttgct aaagatttaa
     3541 gacttgaaaa ttttctagaa agaagcatac tttctttaag cgggggtgaa tttcaaagaa
     3601 tgcttttagc aagagctttg cttaaaaagc caaaaattct ttttttagac gaacccactt
     3661 cagcccttga tttaaactat gctatagaac ttttaagcct ttgtgaaaaa cgagttaaag
     3721 aaaaaaatat tgccgttgtt gctatcttgc atgatttaaa tttagcttct atgttttgcg
     3781 ataaaatcct ttttttaaaa gaaggggaga taaagtattt tggaacaagc aaagaacttt
     3841 ttactcaaga aattttaaaa gaaatttatg atttaaactg cgagattgtt tataaaaatt
     3901 ctaaacctta tattttagct ttaaaggaga aaaaatgaaa aaaattttaa ttattatgag
     3961 tttgttttta atcacactaa atgcaaaaga acgccttgta gtgcttgatc ctgcaagcat
     4021 agaaaccctt tttatgctta aggctgaaga tcaaatcgta ggcattgcta ctttacaaca
     4081 ctcaaatatt tatcctaaag atcaaacctc aaaacttaca agcgtaggca ctttttcaaa
     4141 tccttcgctt gaaaaaatag tagcattaaa accaagtttg gtgattttaa gctcttattc
     4201 tttaaattta gaagaaggac ttaaaaattt tggtatcaaa agtatcaatt taaaagccga
     4261 gcgtttagaa gatataacaa aaaatatcac aaccttaggc caaatcacca aaaaagaaaa
     4321 agaagcagag cttttaaaac aagaatttaa ccaaaaattt aaaaaattaa gcgataaacc
     4381 cctaaataaa agtgcgattt atctttattc tagcaaccct ttaatggcct ttaatgataa
     4441 ttctttaata gctgatattt taagacttat agggattaaa aatttaagcc cgcaaagtca
     4501 aatttcaaga cctgttatat cagcagaata catactgaaa caaaatccag acatactcat
     4561 tcttggaatt aatgctaaaa acaatctttt agatacaaat gctttattga aaaataccaa
     4621 agcagttaaa acaggaagta tttattttaa caaagataca cctatattat tacgtcttag
     4681 tcctaagata atagatagaa ttcaagaatt taaaacaaag ctagaaaata acaattttta
     4741 atcacccaat cttgctttaa aaaattcgca agtttgacaa agtttttcta tgcgtttatc
     4801 ttcttcaaaa gcttttttca tcatctttat acgcggtgat ttaaaaagct tatcaaagtt
     4861 attttcaaaa acatttccca agttaatatc tgctttagta tccaaacagc aaggcaccaa
     4921 acttccatca cttaaaatcc caatttgctc ttttaaagca tgacattttc cttttttata
     4981 aaggggttca tcttttaaat ttggccattt aaaaagttta ttttgataaa gcaaaatatg
     5041 tctttgcaag cgatttttac ttaagtttgc atcgatctta gcttcaaatt ctttggctaa
     5101 aaactcataa atttttaaat ttgacttagg tgctttaaaa ttagcatcta aattccaaag
     5161 tcttagattg ataaaagaaa ggcttttttg ctctaaatgc tttttgcaaa gttctaaaat
     5221 aggcttaaaa tactgttcta aagaaatatt gctttgactt aaaaaagaca ttaaagaaat
     5281 attgatttga tggatattct cataccctaa caataaagct tgatttttag aatttagata
     5341 aaagccactt gtagtgattt caagtttcat agcttcatct tttgcgattt ttagataatt
     5401 ttccaaatta ggtaaaagca aaggatcgcc caaaagatga aaggtaaaaa gctcagcttt
     5461 attagaaatt tcataagcta agttttgaaa tttttcttca ctcattaccc cgcgaattcc
     5521 tttttgagaa ggacaaaaat cacattttaa accacaaata tcgcttaatt ctatatat
//
LOCUS       DARGBD010000104         5507 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.104, whole genome shotgun sequence.
ACCESSION   DARGBD010000104 DARGBD010000000
VERSION     DARGBD010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5507
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.104"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..593)
                     /locus_tag="SFZ04_001571"
     CDS             complement(<1..593)
                     /locus_tag="SFZ04_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG8065811.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNINFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILKQKPYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQKN"
     gene            complement(586..1296)
                     /locus_tag="SFZ04_001572"
     CDS             complement(586..1296)
                     /locus_tag="SFZ04_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8065812.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILKELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLNEFLRYYNA"
     gene            complement(1293..2087)
                     /locus_tag="SFZ04_001573"
     CDS             complement(1293..2087)
                     /locus_tag="SFZ04_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8065813.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPCLTPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSNAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2074..3018)
                     /locus_tag="SFZ04_001574"
     CDS             complement(2074..3018)
                     /locus_tag="SFZ04_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8065814.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLYFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3018..4553)
                     /locus_tag="SFZ04_001575"
     CDS             complement(3018..4553)
                     /locus_tag="SFZ04_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG8065815.1"
                     /translation="MLRWFVLLFLLFFNLEAKIPKDTLIVAVENEISRINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDVSKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKDPKNNSSVYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKYVFDPS
                     IASAQLKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNFDNEFLKDLKVR
                     QALNYAVDKESIIKNLLHDYAFVANHPLERSWANSKNFKIYKYDPKKAEDLLVSAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKARTLGHHGVGFTWNVYE
                     WSK"
     gene            complement(4663..>5507)
                     /locus_tag="SFZ04_001576"
     CDS             complement(4663..>5507)
                     /locus_tag="SFZ04_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG8065816.1"
                     /translation="KIAKFSLSIANKFDNLSLDNKLEKASNFLSIIPRTRAYLPKVND
                     YELKSHKRACNVVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYAPNDLC
                     CGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDLSEYLL
                     KFIVPKLRIDKINENVGLYIMCAARKLGLNENIIKLAKLCTNGKVLIDNDTYCCGFAG
                     YKGFFKPQLNISATKGFKKFYAKTNIKRGFSTSSTCEIGLSDATGISWQHIAYLLDEC
                     SEAI"
BASE COUNT         2127 a          974 c          600 g         1806 t
ORIGIN      
        1 ttattttttt gctgatagtc atataaaaaa gttaaaattt ctttagaagt tttaatatca
       61 agtgctgaag taatttcatc taaaatcaac aatttaggat ttaaaaccaa agcacggata
      121 agacctacac gcgtggcttc tcctccactt aactcatagg gtttttgttt taaaatttgc
      181 ttttttagac taaaaaaatc aaaaaattct aaaatcaagt catcattctt ttgtaaatta
      241 aaattttcca aaccatcttg tataagattt ttgatttttt tataagggtt taaagccatt
      301 ttttgatctt gaaagcaata ctgaatttgc tttcttaaaa gtctttgttt gtttttatca
      361 agcttgtgta agttaagatt ttcataccat acctcaccct cacttggatc ttctaaaaaa
      421 caaagaattc tagctaatgt gcttttaccc gcaccacttt tacctaaaat tattaaattg
      481 tcattttcat ttaaagaaaa attgatatta tcaaaaataa tatgtctttc tttttttaaa
      541 taccaatgct ttttaagctc ataaaactta cttaaattac aaactttaag cattataata
      601 ccttaaaaac tcatttaagc tatataaatt tgaactattt ttttctagca taagaatttc
      661 atctgctaaa gaatttacca aatttaaatc atgagtgatg caaactaagg ctgtagtatt
      721 ttttaattct tttaaaatcg atataatctt agaagcgttt tctttatcca aagaagctgt
      781 gatttcatca caaattaaaa tttggggttg atttaataat gccaaagcta ggctcaccct
      841 tcttgccata cccaaactta attcattagc ataagaatgc cacaaacgat caagattttc
      901 aaatcctaat ttttgaaaat aagaaaaagc gtaatctttt ctttcttttt gttttaattt
      961 tgtatgagtt tttaaaacaa gatgacataa atttccaata tccaaataag gataaagact
     1021 aagctctgca tcttgcaaaa caagtgccac cttagaacga aaatttctaa gttcttcttt
     1081 attaaaatta aaaatacaag aattatgaaa acttaattca tcaaaactta ttgtgaaatt
     1141 agaatctaaa agtcttacca aagcttttcc caacaaactt ttacccactc cactttgtcc
     1201 tagtatcatt aaagttttgc ctgtttttat atctaaatta atatccttaa gcaataaatt
     1261 attcttcaaa ctgatattta aatttcttac cttcaagatc ttatacccca aattttttgt
     1321 aaaaaattac ccaaccataa aagaggtaaa aacaacaaaa gcaagcttaa aagtggaaaa
     1381 agtatcatcc accaagcgcc tataaaaact gcgtttgaag actcactcaa aagagtacct
     1441 aaagttggaa tttcaaatcc taaacccagt ccaaaaaaac tcaaagtagc ttctgtggct
     1501 atagcatgaa cgatattaaa tataaaaagt gtaaaaatca gtgtttttaa agcaggtatt
     1561 aaatctttaa aaaaagctct aaatttagtt cttccaagca ctatatttgc tttgtaaaaa
     1621 tctaaatttt caagtctttt taattcactt tctataattc ttgctatgaa acaccaatga
     1681 attaaagcga ttaaaaaaat catcaaaaac acatcagaag ttatcatact ttgaaaaaac
     1741 atcataagta aaaaagcagg caaggctaaa aaaaactcta aaatacgcat ccaaaaaaca
     1801 taaaaaaaac atcgcgctaa aaacaaataa cacaaagcaa agataataga caataaagat
     1861 ccaccaacac ctataatcaa agaatttctc aaagcaaaaa gcaaacgaga aaacaaatcc
     1921 ctgcctaaaa aatcagtccc taaaatataa gtaaaattag gagcttgatg caaattttct
     1981 aaatgagtac ttaaaatatc aaaaggagtc aaacaaggtg caaacaaggc acataaaaat
     2041 aaaaaaatta aaggcgcaag aatgataaga aatttaaaca aaatcaagcc ttcttaatct
     2101 aggatttaaa atcctagcta caatatcact taaaaatgta aaaaatgctg caagcaaaac
     2161 gctaaaaaat ataagtgcaa gtacaacagg ataatcttta aaaataatac ttttaaaaag
     2221 taaagaccca agtccctcgt aagcaaagac actttctacc acataagttc ccatcataaa
     2281 acttaaagca cttcccccaa aataagccac aatagggctt aaagaatatt tcagaactaa
     2341 aaaataaata tctttctccc ttaaagctct agcgtataaa ttttgaataa aaatttgaga
     2401 aaaactttca ttgataaaat ttctagcaat ccttaaaaat aacgccaaat gtgataaaac
     2461 gagcaccaaa acaggcaaaa tcaaatgctc taaacgattt aaaaaatcat cttcaaagcc
     2521 tatatcacta cttcccataa caggcaaaat tttccaaaaa attccaaaaa tcaaaacaaa
     2581 caataaagcc aaaacaaaag gaggtaaagc aaaaaaatta aaagctaaaa aagtgatgat
     2641 tttatctata aaactttctt tataataata tcccaaaagt gccaaaaaaa cactgagtaa
     2701 aaataaaagc attaaggcac taaaacccaa aataaaagta ttaaaaattc tttcttttat
     2761 aagctttaaa acactttctc cacttaaaaa agaaactcct aaatctcctt ttaaagcctt
     2821 aaaaagccaa attttatact gctctagcaa aggcttatca agccctaaat tttgttctat
     2881 tctttgaaca aattctttac tttgtgaatt aactccatta gcataagcta tactgccttt
     2941 actaaaataa agtaaaacaa aacataaaaa agtgctaaaa aatgctatga aaatactaaa
     3001 aactaagcgt tttagcacta tttactccac tcataaacat tccaagtaaa acccactccg
     3061 tgatgaccta aagtccttgc tttgatacct tttaaatctt tattataaac taaagcaaaa
     3121 tcaagataag ctaaaaaaat aaaaggggga ttttcataca aagcatctat aaaatcttta
     3181 taatattttt ttctctcttc taaatttgaa gtatttcttg ctttttgcaa ggctatatcc
     3241 acttttttat catgataatg tccaaaattc caaccctcat catttaaagc actatcttgc
     3301 gaactttcaa ataccctaaa agtgtgaaaa tcaggatcta aaggacttcc ccagcctatt
     3361 aaaaaactat ctactttaga ataatcaaaa cttccagcag gtttagccac caccttgctt
     3421 acaactccta tttttctaaa ttcgctttgc aaaattccag ccaaacttac ccttaaagga
     3481 tcattactca tcgcccaaat ttcaaattct aaaattttcc catctttttc aaaatttcca
     3541 tctttatttt tcttaaaacc tgcacttaca agcaagtcct cggctttttt aggatcatat
     3601 ttgtaaattt taaaattctt agaatttgcc caagaacgct ctaaagggtg attggctaca
     3661 aaagcataat catgtaaaag attttttatt atactttctt tatcaactgc gtaatttaag
     3721 gcttgtctta cttttaaatc ttttaaaaat tcattatcaa aattaaacat taaagcccga
     3781 taatcagccg atttttcacg taaaattcca aaattttcat catttttaaa aatatttagc
     3841 aaagaaacat cgattaaagc tgcgtctatc ttgccatttt taagctgggc actagctata
     3901 gaaggatcaa aaacgtattt tataataagt cttggagttt ttaccttatc aagataaaaa
     3961 tgttcattgg ctttaaattc aacatattca ccttttttcc attttacaaa tttataagga
     4021 cctgtaccta taggattttg attaaaagag cttgtgttta aattctcatt ttcaagcaaa
     4081 tgtttaggaa gcatacctat gcttaaagca tctaaaaatg caggataagg tttaaaaagt
     4141 gtgattttca catgagaagg atttaaaatt tccacacttt taatgtcttc aaaattgaca
     4201 taaacagaag aattgttttt aggatcttta aaggcttcta tactaaattt cacatcatca
     4261 gcactaaatt tgactccatc atgccataaa acatcatctc ttaaaaaaat atcataaaca
     4321 agcccgtctt tactaacatc ccaagactta gccaaatcag gttttaaact catattttca
     4381 tcaaaacgcg taagccctga aaatacaaga ttaatcactg catcatgatc ctcactataa
     4441 gcaggattta tccttgaaat ttcattttcc acagctacga ttaaagtatc ttttggaatt
     4501 ttagcctcaa gattgaaaaa caataaaaat agtaaaacaa accatctaag cacttgtaac
     4561 tcctcaaatt taaaatttta aagaattata aaataaaaaa taagaagcca caagccctat
     4621 ggggggataa tttgctttaa attatggagt tttatttatc aattaaattg cttcactgca
     4681 ttcatccaat aaatacgcta tatgctgcca agatataccc gtagcatcgc ttaatcctat
     4741 ctcgcaagtg cttgatgtac taaacccgcg cttaatattt gttttggcat aaaatttttt
     4801 aaagcccttt gtagcactaa tatttaattg aggcttgaaa aagcccttgt atccagcaaa
     4861 cccacaacaa taggtatcat tatctattaa tacttttcca ttcgtacata gctttgcaag
     4921 cttaattata ttttcattta aaccaagctt tctagcagca cacatgatat ataatcctac
     4981 attctcattg attttatcaa tgcgtaactt aggaacaata aattttaata aatactcgct
     5041 taaatcataa atttcatact ttgaatgatc actaattaac ttagcactac aagcactatg
     5101 atctaacact atgggtgagt ctatattgct taaaaagtca ttgatttttt gtatattttt
     5161 atcttgaata tcttgaaaat tctcataagc cttaccacaa cataaatcat tgggtgcata
     5221 aataatgcct atatttgctt ttttacacaa gctctcaaat acttcttgca aacttctttt
     5281 atcatgcatt ttttcatttg gtttaaagct tttattaaga cagcttgtaa aataaaccac
     5341 attgcaagct cttttatgac tttttagctc ataatcattc accttaggca aatacgccct
     5401 agttcttggt ataatgctaa gaaaattgct tgctttttca agcttattat caagacttaa
     5461 attatcaaat ttatttgcga tacttaatga aaatttagca attttta
//
LOCUS       DARGBD010000105         5480 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.105, whole genome shotgun sequence.
ACCESSION   DARGBD010000105 DARGBD010000000
VERSION     DARGBD010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5480
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.105"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..489)
                     /gene="tilS"
                     /locus_tag="SFZ04_001577"
     CDS             complement(<1..489)
                     /gene="tilS"
                     /locus_tag="SFZ04_001577"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEG8065817.1"
                     /translation="MQIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     GYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRSNYTLLRPLLFISKDEIS
                     SFL"
     gene            complement(479..1798)
                     /gene="rimO"
                     /locus_tag="SFZ04_001578"
     CDS             complement(479..1798)
                     /gene="rimO"
                     /locus_tag="SFZ04_001578"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEG8065818.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVIIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            1872..2969
                     /gene="prfB"
                     /locus_tag="SFZ04_001579"
     CDS             1872..2969
                     /gene="prfB"
                     /locus_tag="SFZ04_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEG8065819.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(3127..3333)
                     /locus_tag="SFZ04_001580"
     CDS             complement(3127..3333)
                     /locus_tag="SFZ04_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065820.1"
                     /translation="MFDLGNQEIMKKYPNHKLYDYTSVRTISDINNPEGKIKEMKRDL
                     EIDKTPYSNYVFLLNPNDKKTIKL"
     gene            complement(3563..4681)
                     /gene="truD"
                     /locus_tag="SFZ04_001581"
     CDS             complement(3563..4681)
                     /gene="truD"
                     /locus_tag="SFZ04_001581"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEG8065821.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFIHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQG
                     FTNYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDVSAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(4650..5471)
                     /locus_tag="SFZ04_001582"
     CDS             complement(4650..5471)
                     /locus_tag="SFZ04_001582"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEG8065822.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEIAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKYGVKLNIFGKAVKGKYEFRGREHHF"
BASE COUNT         1859 a         1025 c          719 g         1877 t
ORIGIN      
        1 taaaaaagat gaaatttcat ctttacttat aaagagtaaa gggcgtaaaa gtgtataatt
       61 tgagcgtttt tcacattctt gcatacctaa aatttcagcc aaacctgcgc ctcgtgaaag
      121 ttgcatcaaa aaccattcaa attgatcgtt taaatgatgg gctaagataa gatgatcata
      181 accttgctca agacaaattt tttcaaaaaa atcatagcga aaatctctgg cttttttttc
      241 aaagttactt tgaaatttag gagcgtgttt tatgaaaatt tttttatgaa attttaaagc
      301 aagttctttg gcttttaact cttctaaatc actatttttt ctagttttgt aatttatcat
      361 cacaagatca aagtcgatct tttcttgcat taaaagataa aaaagcacac tagaatcact
      421 tccataagaa aaagcgagta aatttttacc cctttttaaa agggctaaaa tttcatcttt
      481 aatttgcatc tacttttctt aaagccttag caaggagttt tttatcaagg ttttgtaaaa
      541 tttcacattc ataaatttgc cccatttcca aatttccaca ttcgctttca ttaataagaa
      601 tttccccatc aatctctcta tcccatctta aatctttagc tgcgataaaa aactctccct
      661 cactactttc tcctgtgcaa actactaaac gcttttgccc tacttctttt tcaaaacttt
      721 tttctatcac ttcatcaaca attttttcta tgattttaag ccttttattg atcactttaa
      781 aaggcacttg ctccatatca aaagcggctg tatcttcttc cttagaatac gcaaaaacac
      841 tcaccctatc aaaaccaaag tctttaacaa actcacaaag ctcttcaaaa tctgcctcac
      901 tttcacctgg atgccctacg ataaagcccg tgcgtaaaaa gctatttggc gcacttttca
      961 ttaaatttag catttcttta agtcttgtgc tatttgcccc acgcttcatg attttaagca
     1021 tattatcact tatgtgctgc aaaggcatat caaaataatt tacaaaaatt tcagaagcta
     1081 taatgcgttt aatcaaagct tcactcgcac tcgtaggata aagatataaa attctagccg
     1141 ctcttatgcc tttgattttt tccacctcat cgattaagcg tataagccca tctttttcac
     1201 ccttatcaaa caaataagaa ctcgtatctt gtgcaataaa agaaaagtcc ttataacctc
     1261 tagctaccaa atctttaagc tcagctataa tgctacttat ctcacgagat tttaacttgc
     1321 ctttaaaact tgggatggca caaaaagagc atttttgatt acaaccttcg gcgattttta
     1381 taaaagcatg ggaatttgaa cctgtgataa tacgtttgga attttcactc tgcaaataag
     1441 tcgaatttga aaataaattt gtttttttaa gtatcatttc atcgattctt tcataatcac
     1501 ccacacctgt gaaaagatca acctcaggaa gttctttcat aagttcttcg cggtaacgct
     1561 gcatcaaaca acccgtaacc accaaaagag aatctttttt tctttgttcg tgcaaatcca
     1621 aaatcgcatt aatactttct ttttttgcac tatcgataaa accacaagta tttacgatta
     1681 taacatcagc tttgcttggt tcatcgcaaa gttcataagc actaaggcgc cctagcatga
     1741 tctcactatc gactaaattt ttattacaac ctaaagacat aagataaagt tttgacattt
     1801 ttttcctata ttaaagtttt cttttgatat aatttttgac tttaaaaata taattatagc
     1861 aaagaaattt tatggataat tacgaattta gcgaactttt aaaaacttta aaaaacaaag
     1921 tcggcaacat agcctccatc atcaagcctg aaaatatcca aacaaggctt aaagaaatcg
     1981 aagagcttga aaattctcct tctttttgga gtgatgttaa acaagcagga atcataggta
     2041 aagaaaaaac taaaatcacc aatctactta aaaactatga aaatgctttt aatgctctaa
     2101 atgacgcaag cgaacttttc gatctggcca atagcgaaaa cgatacagaa acacttgaag
     2161 ctttatttaa tgacgcacca aaacttgaag ataccatcac aagtcttgaa atttccatgc
     2221 ttttaagcgg ggaaaatgat ggtaaaaatg ccattgtttc cattcaccca ggtgcaggtg
     2281 gaacggaaag taatgactgg gcaagcatac tttatagaat gtatttaaga ttttgtgaaa
     2341 gagaaggttt taaagtcgaa actttagact ttcaagaagg cgaagaagca ggacttaaag
     2401 atgtgagctt tttagttaaa ggagaaaatg cttatggtta tttaaaagct gaaaatggta
     2461 tccatcgttt ggtaagaact tctccttttg atagtgcagg acgccgtcat acaagctttt
     2521 caagtgttat ggtaagccct gaacttgatg atgatataga aattgaaatc gaagaaaaag
     2581 acataagaat agattattac agagcaagcg gtgcaggcgg acaacatgtc aataaaacag
     2641 aatcagctgt gagaatcaca cattttccaa ccggcatagt cgtacaatgc caaaatgaca
     2701 gaagtcagca caaaaacaaa gccaccgctt ttaaaatgct aaaatctcgc ctttatgaac
     2761 ttgaactcat gaaacaacaa gatagtgcta atactggaga aaaaagcgag ataggttggg
     2821 ggcatcaaat ccgttcttat gtgcttttcc cttatcagca agtcaaagac aatcgcagcg
     2881 gagaagcttt ttctcaagtg gataatatcc ttgatgggga tatcaaaaaa atgatagaag
     2941 gcgttttaat tgccttaaaa gcggagtaac agcttaaaaa taagtaattt ctgcaaaatg
     3001 tcggtataaa aagaattaga aagatagcgg gattttcccg cttgttttat tatcttgcat
     3061 aaaacctaag agcatcattc acagaacaat aaactctttt cttaaaatct ttatcgcaat
     3121 aaacactcac aactttatag tctttttatc gtttggattt aataagaaaa catagtttga
     3181 gtatggagtt ttatctattt ctaaatcacg cttcatttct ttaattttgc cttctggatt
     3241 gttaatatca ctaattgttc tgactgaagt ataatcataa agtttatgat ttggatattt
     3301 tttcataatc tcttgattac ctaaatcaaa catagcttga tcgttgccat tgttttttta
     3361 ctcgactaaa tcgccatcgc cacaacctat aatcaaagtc atagctccta aagccaaagc
     3421 acttgttaaa atctttttca ttatttttgc tcctagtttt aaaattaaat taatataact
     3481 atacctaaat ttaaaattta aatatcattt ttgcaataaa ttctaaagta aaaatcacgt
     3541 aaaaatttaa ctcataatta tttcactcaa acaaattttt atgcaaaatt tcttctaaaa
     3601 ccacagtagc ataagagcct ttttgcaaga aaaactctat acaaaaatga gctttttctt
     3661 catcataacg ccattttaac tcttctaaat atccccacat aaagcgtctt gaaccttgca
     3721 ttttagcctt aaactccaaa gtatctttaa aaatttcatt ttctaaattt aaggccaaac
     3781 cttctcctgt ttcataagcc ttagcaccga ttaaaagccc catggcgctt acatctcttg
     3841 ccttaaaacg cccaagctca gcacttaaat cctcgcataa aaaacacttt ccaaaaggat
     3901 aatgccctaa aacctcacct tttaaaagct taaaaaattg ttcttgtttt ttaagttcct
     3961 tagcttcttc tttagaaatt ttataaattt ggatcaattc tttttcgcta aaatcatttg
     4021 caaaatgtga taactccact cttttactca aatagcgatt aaaaagctca ctttgaaaag
     4081 ctgaaattaa aaactctttc atttttacat ttttcatttt tttgccacgc aaaatttcaa
     4141 gcccttcttt ataattatcc ccaaattttc caaaacgctg ataaccaaaa taattcgtaa
     4201 aaccttgctt atccaaattc atcaaagctt gttctagttt taaagcatcg cttggtaaaa
     4261 ctttttttaa gcgtatgaaa aaagtatttc cttttaaatg ccctattctt agcttgtttt
     4321 catggataaa aatttctaaa attttaagtt taggatgaga aaaatttgac aaaaaactct
     4381 caaatttttt aggcatagaa aggtattgaa aggttgatcc ttgcttatct ttaagccctg
     4441 cataaccaaa atctcttatt ttaaccccgc ttgtttcact taaaattttt aaagcttcat
     4501 ttgtggttaa atctttttta ttgatatgca aaataagatg ttcaccctta ccgctaaatt
     4561 catacaaagg cctttcacgc actacaaaat catcgctatt tttactaaaa tacgcattaa
     4621 taggactgtg ttttaaacta tacaaaggct taaaaatggt gttctcttcc tctaaattca
     4681 tattttcctt tcactgcttt tccaaagata tttaatttca cgccgtattt tttggctatt
     4741 gtttttatat tttgacgctc tttttcatca aaagcaaaca aaatttcata ttcttctccg
     4801 ctataaagcg tataatcatc aagtttttta aaccaagaaa taccgcattt atttaaggct
     4861 agaagtcttg ataaatcctt gcttaaacca tctgaaatat ccatagcaca agaaattaaa
     4921 ggtgcgattt cataaaaaaa actagctctt aattttggct ttataaatac atggtttggt
     4981 tttaaagtgc ccccattttg taaaatttca agccctttta aacttcgtcc taattttccc
     5041 gtataagcaa gtaaatgccc cttttttaaa ccttttctaa aaacagcttt atcgttaatc
     5101 tttgaaatga tagtaagact aatgtctatt ttatcattgc ttatagtatc accgcctatg
     5161 atttttatat taaatttcct agctgttttt aaaaaacctt tttgcaaggc tttgatctca
     5221 ttttcgctta aattttttgg taaagcaagt cctaaaagtg cgtattttgg tacagcattc
     5281 attgaaatag catctgagat attaacaagc attgcttttg tagcaatttg ctctaagcta
     5341 aaccactctc ttttaaaatg cacattttca aaaaacaaat ccttactaaa acaccaatca
     5401 tcaataatag ctccatcatc gccatttttt tcatttaaaa aagctttgat aataaaatct
     5461 tctttgttca taatgcgtga
//
LOCUS       DARGBD010000106         5394 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.106, whole genome shotgun sequence.
ACCESSION   DARGBD010000106 DARGBD010000000
VERSION     DARGBD010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5394
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.106"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            98..816
                     /locus_tag="SFZ04_001583"
                     /pseudo
     CDS             98..816
                     /locus_tag="SFZ04_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            746..2674
                     /locus_tag="SFZ04_001584"
     CDS             746..2674
                     /locus_tag="SFZ04_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065823.1"
                     /translation="MGVENIYTLPLNGAPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLDKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISNNF
                     YGKNYYNLYGGFATEGANFNIIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTVFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILSNKIKNPILTIEKLINLPSNGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNRLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
     gene            2686..4128
                     /locus_tag="SFZ04_001585"
     CDS             2686..4128
                     /locus_tag="SFZ04_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HEG8065824.1"
                     /translation="MKKMSKHIVLSFAVSSLLFSQAYALPQGGKFTHGTSGTIHTSGN
                     TVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQKDASKIDGALNRGNNN
                     IFLVNPMGVLIGKTGTITAGKFVASTTALSDDNVKTFLEKGASFSPAFDVSKQGNIIN
                     LGKINADNIVLIGNKVEINKGKITLDVLKLEGNKVYVDAGVVKDTKNIVAKAEQEVII
                     QQSITSFEENGALLGNSSSKFSFDDSSKVKNWTKYGSIADATEWNKFADFWNVNKEKF
                     RTAFDHFRLIDDIDFSGVKTYIVGDNTSNAFAKSFDGSGYALKNVNINSSNQYVGIFG
                     VVQNSYIRNLNIQGLKIASTGYDAYVGGIVGQNIANSYTGFENVTVNDLVINTAVNTK
                     VGGIIGWGNGSGGNNTINFTNVAINNISIVAKEGSYVGGIGRQIDGGNFNNVVVNDIE
                     KLITSGNDSKTGGFTGKVGNLKINNAYLFL"
     gene            4284..5322
                     /locus_tag="SFZ04_001586"
                     /pseudo
     CDS             4284..5322
                     /locus_tag="SFZ04_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895311.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2096 a          639 c          946 g         1713 t
ORIGIN      
        1 aatattttat tttataatca actcaggaca tacgggatag tgttgcaaat aatcaatttg
       61 cgataaatca aaaggattta ttttagtgag aaatgagatg aaaaaatatt ttaatatttt
      121 taaaaatttt tacaaataag acaaatgcaa aatttggatt gggcgtttgt agtgtggttt
      181 tatcttcttc ggtttgtttt gcggcggttc aggctacaag caaggatgga aaaattttta
      241 tatttctgaa cattctttta aggataatca agtttatgat cctcaagcag aaatttttaa
      301 aaaaattaat ggaaaaaatt tctatacttc taagtcaaaa taccctatat caaatttaac
      361 tatgatttat aataacccta aatctggaaa taaaaattta tccaagcttg aaattttaac
      421 tccggatact tcaaaagaag agatcataac agcttttagc actttaggaa ccgtatcttc
      481 agatactcaa gctgttccta gttcttttat accttttatt gtaacagctt atgctcaaaa
      541 tacaaatgca acaaataata aacttatatt agaaaatgga gaattatctt ctgtgtattt
      601 ttgcaaacca agcatagggg attgtggagt acctaataat tctcaaaaag gcgatcgttt
      661 taagtattta attactgcgg cgtttactga cagggagggg gatttaacaa tcaaaccatt
      721 ttaaaagaaa actcctatat caataatggg tgtagaaaat atctacacct tgcccttaaa
      781 tggagctcct tatatttcag gatctgtagc ttttgatggt gaagctaaag acaataaatt
      841 aatcttagag tcaaatacaa aaattgacct tcataattcc cagtattttt cagatgaaga
      901 aggtaaggat atttatgatg aaagaattac tcgtttaatg ggagcttttg gcataaattc
      961 taatttacaa aacaataaag ttcttatcga ttcagccaat atcgtccttc atgggccaga
     1021 tggtgagtat acagctcgtt cgacctttga aattttaggt gctttagctg atgtaaataa
     1081 tcttaaaaaa tacaatgtaa gtaaaaattc cgtaataatt aaaaatttaa atttagattt
     1141 aatggtaaat tcgcaaaata aaataacttt ttatgatgct gttttatttg gagaaattta
     1201 cggtggaaga acattacagg gtaatgcaga gaaaaattct atagaagttt atcattttaa
     1261 ctcattagat catcttgata aaaacattaa aacacatgca tcgttaaacc tctatggtgg
     1321 gtattctaac gatggtgaag ctaatggaaa taaaattgta tttcgtctta aaaaaccttt
     1381 aaaaatcagt aataattttt atggaaaaaa ttattacaat ctttacggag gttttgctac
     1441 ggagggtgcg aattttaata ttattgatat acaaaatgat ttaacctatg aaaaagttcc
     1501 acaaaattat tctgataaat ttactgtata tgcagctaga actttaagtg gaaaagcaaa
     1561 taataatacc ttaagtataa aagattctgt tatttcattg cctttatatg cttttattac
     1621 aagtgaaact acgctagatg gtatagacta tatcgctgat gaatcaaaca ataatgaagt
     1681 aaattttgaa aatattaaat catctaaaaa tttaagtttg atgatcaatg ctaaaaatgt
     1741 ttcaaataat aaaataaatt ataatctcat tcagagttta accgaagcga gttctttagg
     1801 aaagggctca aaaattattt taaaagcaac tcaaaatgca aacaacaatc ttataaagct
     1861 taaagattgt tcttcggctg ccgtggaaag ttcgtgcatc ataaaagcag ataaagaaag
     1921 tgcttttaat aaaatcatca tcaacaacac agtttttagt actgcctcag ataaaagaca
     1981 aggttatgtg gggttgatag ctggagtgtc tgcaaattct catgataata tcatggagct
     2041 tgttaattta aatatagatg agtataaaaa tcaagatgct atatttttag ctccatctgg
     2101 aacttcggat atttcaaatt ttaaatctta taacaatact ttatatttag gtggagagtt
     2161 aaatttcttt aaagatgtaa atatcgattt gctttctggt tctgtttttc atgaagtaaa
     2221 taaaaaaggc aaaataatca ctcaaattct accgcatcaa gaagattttt ctaaaaataa
     2281 tcgtttgatt atagatactc aagatgtcaa atcagaagtg gtaaataact ttgaaaattt
     2341 tacttttatt ttatcaaata aaataaaaaa tcctatcttg actatagaaa aacttataaa
     2401 tcttccttca aatggaagta tggaaattct tactaaaaat aaaccaacaa aaggaaaata
     2461 tattctcata caaagtgatg ttggaattta tgatggtgac aatagattgt taaatcaaca
     2521 agaattagaa aatttgttag aaaaaatgaa aaataataaa aataaattta attacaacaa
     2581 gatagaaaag ttggctaaaa gtacattgaa aaatgtaaat tttagctttg aagtttcaga
     2641 tgatgcaaaa ataatttata tcaacatact ttaaaggaga gtaacatgaa aaagatgagt
     2701 aaacatatag ttttatcatt tgcggtgagt tctttgctct tttctcaagc ttatgctttg
     2761 ccacaaggag gtaaattcac tcatggtaca agtgggacta tccatacctc tggcaatact
     2821 gtaacgatta caggaaaagg acaaaatcat gttatccaat ggggtggcgg ttttaatata
     2881 ggacaaaatg aaagtgtaaa ttttaacggc aaaaatcaaa actacctaaa cattgcttat
     2941 caaaaagatg cttctaagat agacggagct ttaaatagag ggaataacaa tatcttttta
     3001 gttaatccta tgggagtttt gattggcaaa acaggaacta ttactgcggg aaaatttgta
     3061 gctagcacaa cagctttaag cgatgataat gtcaaaactt ttttagagaa aggagctagt
     3121 ttctctccgg catttgatgt aagcaaacaa ggaaatatta taaatcttgg aaagatcaat
     3181 gcagataata ttgttttaat aggaaataag gttgaaatca ataaaggaaa aattactttg
     3241 gatgtattaa aacttgaagg taataaagtt tatgttgatg ctggagtggt aaaagataca
     3301 aaaaatatcg tagccaaagc agagcaagaa gttatcattc aacaaagcat aacaagtttt
     3361 gaagaaaatg gagctttatt gggtaattct agtagtaaat ttagttttga tgatagtagt
     3421 aaagttaaaa actggactaa atatggaagt attgcggatg caacagaatg gaataaattt
     3481 gctgattttt ggaatgtaaa taaagaaaaa tttagaacag cttttgatca ttttcgtttg
     3541 attgatgata ttgattttag tggcgtgaaa acatacatag taggtgataa tacaagcaat
     3601 gcttttgcta aatctttcga tggttctggt tatgctttaa aaaatgttaa tattaattca
     3661 tcaaatcaat atgtaggaat ttttggagtt gttcaaaata gctatataag aaaccttaat
     3721 attcaaggat tgaaaattgc ttcaactggt tatgatgctt atgttggagg tatagtaggg
     3781 caaaatattg caaacagtta tacgggtttt gaaaatgtga ctgttaatga tctcgttatt
     3841 aatacagctg taaatactaa agttggcgga ataataggct ggggaaatgg tagtggaggg
     3901 aataacacta tcaattttac aaatgttgct attaataata taagtatagt agcaaaagaa
     3961 ggttcttatg tgggtggcat aggcagacaa attgatggtg gtaattttaa taatgttgtg
     4021 gttaatgaca tagaaaaact tataacttct gggaatgata gtaaaacagg aggatttact
     4081 ggaaaagttg gaaatttaaa gattaataat gcttacttat ttttataaaa atggagcaat
     4141 tttgagcgct ggaaactata aaacacaagc tggaaaagtt attggtgatc ctggattagt
     4201 gtaaataata attttagtaa tatttatgtt tatcataatt tagaaaatgg ttacattgat
     4261 gaaggacaga attttttaag tctgtgcaat ataataatga agtaacagaa aaaaaagatt
     4321 ttgatagtgc tgtaagaaag aaatttaacg atataaaata tcttgataat aattcttatg
     4381 cttttgctga ttcttttacc aaggtaacag atgctgtgaa attatccaaa gacgactttg
     4441 accctaaatt gcttcaaaga attttagatg atttgatgaa tggaaaatac acttatgatt
     4501 ttgataccaa aacttggatt tacgcagata gcaagggtgt ggcaggggaa aatgaagcca
     4561 gtgagatcac tcaaagttta aatttcttaa atacatttaa agatactgga gtagaacaag
     4621 aatttttaaa gttatggcaa ggttcgcaag aacaaagtta taaaaattat accaatcttt
     4681 atgaaaaatg gacgcaaaag aaaactgcta tggataaaat caaaaccggc aaaggttgtt
     4741 tcgctagttt taaagaagaa ttacaaaaat accaagaagc cttagctcaa cttgacaaag
     4801 aaaataaaaa ctatgaaaaa atcaaagaat caggcttagt tagcgatgaa acgcttagag
     4861 ttatgtatgc aaaactttta gaacaaaaag aagctcttga aaagcagttt gcggatctta
     4921 gtggaaatga aggatttcac tataagcttg aaaatgagat tctaaattct caaggttttg
     4981 ctataaatgg aagcgatgta gatggtaaag tgtacactgg aaaatataat tttgaaggaa
     5041 aattagcctc attgccagaa aaatcaaata tatctatcta tgagccagat aaacaaaaaa
     5101 aagagggagg gggtgaagat ccagacaaac cttctgtatt gccgcctgaa attcctgaaa
     5161 aggttgtaga agctcctata aaaattcaaa ctaaagtaga cacaaaaaaa agaagatgat
     5221 gatcaagtgg acataggaga agcagatgct agaagtagtg gtttgcgttg tattgtaagt
     5281 gataatttta agacaatgaa catttgtgta aatgcaaaat aggaaataaa aatgagaaat
     5341 ttaatcttat tgcaagtatt ttcacatgct gaagagctaa ataataataa aata
//
LOCUS       DARGBD010000107         5315 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.107, whole genome shotgun sequence.
ACCESSION   DARGBD010000107 DARGBD010000000
VERSION     DARGBD010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5315
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.107"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            235..1551
                     /locus_tag="SFZ04_001587"
     CDS             235..1551
                     /locus_tag="SFZ04_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG8065825.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1527..2174
                     /locus_tag="SFZ04_001588"
     CDS             1527..2174
                     /locus_tag="SFZ04_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG8065826.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKTRFEKKVLKDDELIFLAKKYQIIFDENAKKIYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWSKKTGLFYTHLSIKNMKTRWGSCNHNKAY
                     INLNLKLIQKSLRAIEYVILHEISHLKFPNHSKEFYTFIEHFMSDFRQREKEFLS"
     gene            2216..3736
                     /locus_tag="SFZ04_001589"
     CDS             2216..3736
                     /locus_tag="SFZ04_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065827.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGQGFSPCIPEDKEFSKFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFNDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDDEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFNKEFPLLDENFKLQNNFYSLLGLLGRVLNLGRNL
                     QESASELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDAPLRV"
     gene            3717..>5315
                     /gene="hypF"
                     /locus_tag="SFZ04_001590"
     CDS             3717..>5315
                     /gene="hypF"
                     /locus_tag="SFZ04_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEG8065828.1"
                     /translation="MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFAFCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRAHTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLCKKLDKVFDFYLDYDREIINASDDSIAQVVNGETMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHF"
BASE COUNT         1825 a          591 c          962 g         1937 t
ORIGIN      
        1 tattttttaa aaaacattta ttgcaaatat taaaagaacc tttgcaagat aaaatttgca
       61 agaaggaagt ctcatataaa tgtgatgagc tagtgtatac tttcaaagaa gaaaatcatc
      121 aaattatttt aaatataaca aattgagtat attaaatgtt tatatttaaa aaagtaattt
      181 ttaagtagaa ttgtttttta aaaaaatatt taaaaaaaga gataagataa catcatggca
      241 aaaaaacaac tctccttaac aagactcagt tttcctatat tttgggattt gctttctaag
      301 tatttaaccg tgattatcaa taccgctatg gtgtcgcatt attctaattt tcttgttggt
      361 gctatgggcg ctggaaatca aattttagat ctttttatca ctattttttc atttttaagt
      421 gtgggttgta gtgtggtgat cgcacaagca attggtgcaa aagatcatgt tttagcaaga
      481 aaagtgattc atcaaagttt gttcttaaat gcacttttag gctttgtatg cggtgtgctt
      541 attttatggc atggggagta tttgctttat cttttaaaaa ttccacaaga attgctcaaa
      601 gatagcgaaa tttacttaca tatgcttgca atttgtttgt tttttgatgc cataggtatt
      661 gttttagctg ctattgtaag ggtttataat atggcttatt gggtcatgtt tataggtttt
      721 ttgatggata tagtggtgat ttgtggaaat tattatgttt tgcattatac aaagtcagaa
      781 ctttttggaa tagggcttag taatattttt gctcgcattg ttgctatagt tgctttgttt
      841 gcgatacttt tttataaact taaaattcat cttaaaatca aagaaatgat aaaacttgaa
      901 aaagaagttt taaaaaaggt tttaaatata ggaggatttt cagcagggga aaatcttttg
      961 tggatagtcc aatatactat agcttttgct tttgtagcaa gcttaggtga ggcgagtttg
     1021 agtgtgcaaa cgatttattt tcaaatttca atgcttatca tgcttatagg acaagctacg
     1081 agcatagcta atgaaatcat agtaggtaaa ttagtcggtg ctaggtatga aaatatcgct
     1141 tataaacatg cttggcgtgc tttatatttt agtgtaatag cgagtgcttt agtggcgttt
     1201 ttaaactatc tttgtcaaga ttttactatg caaattttag ggcttaaaga agagctaaaa
     1261 aatttaatga tacctttatt tgctctttca atctttcttg aaatttcacg aacttttaat
     1321 atagttatgg ttaattcctt gcgcgcaagt ggcgatgcta agtttccatt ttttagcgga
     1381 cttgttttta tgatgggggt atctttgcct gtgggttatg tgctttgttt tcattttaat
     1441 cttggaattt taggggtttg gataggattt tgtgcagatg agtttttgcg tggaatggta
     1501 aattcataca gatggaaaag taaaaaatgg caaggcaaag ctctagttta aaatcattta
     1561 tttataaaga tgagtgctat ttttattcta aaaaatgcat aaaaacttta agattaaggc
     1621 taaatgaaaa gggtgaattt gttcttagta ttccttattt ttgcaccttt aaaagtgttt
     1681 atgagttttt agataaatca agttcttgga tgaatgaggc aaaaacaaga tttgaaaaaa
     1741 aagttttaaa agatgatgag ttaatctttt tagctaaaaa atatcaaatt atttttgatg
     1801 aaaatgccaa aaaaatttat tttgataaag ataaaataat ttgtcaaaat aaagcaaaat
     1861 tggatttatt tttaagacaa aatgctaaaa agatttttac tttttatctt aaaaaatgga
     1921 gtaaaaaaac aggcttattt tacacgcatt taagcattaa aaatatgaaa acacgttggg
     1981 gttcttgcaa tcacaataaa gcttatatta atttaaattt aaaactcatt caaaaaagtt
     2041 taagagctat tgaatatgtg attttgcatg aaattagcca tttaaaattt cccaatcata
     2101 gcaaagaatt ttatactttt atagagcatt ttatgagtga ttttaggcaa agagagaaag
     2161 aatttttaag ttaaaaatgt tatatttata gtttattttt caaaaaaggc ataatatgac
     2221 tttggatttt gattttattt ataatgcaga taatgatatt tttgaatatt tattgcgttt
     2281 ttatgcgaaa aattacaatt atatccttag taaagaagaa aatacttatc atttttctat
     2341 cgatgcagat gaagaaaatt taaagacttt ttgtgattct ttgaatttca tgagtcatag
     2401 cgtttttttg aaaaaatttg atgtaaaagc ggggcagggt tttagccctt gtataccaga
     2461 agataaagaa ttttcgaaat tttcttatat tacgcattta aattctaatg cttatcaaga
     2521 aaaaaaactt ttaaacaaaa atgaatgggg tgtgttttgt gagtgtgaat tttcaagcaa
     2581 tttatcagaa tttgaaaaaa tcaatgaaga aaatttcaat acttttttaa atcttgcttt
     2641 tgatttgtta agtcaagaaa aaaagattta tttaaaagat aaaaatggca tttatgaatt
     2701 ttctttgttt aagaacgaat ttataggaga ttttttactt ccttgtgata ttaaagctat
     2761 aaattcagtt tttgtttgtt caaatgaaaa tttaaaactt cttgcaagtt tggaaaaacc
     2821 tttgatgaag ctaaggctta atgctatgtt tagaaaaaat cacaatcttg attttaatga
     2881 ttttaaaatc agacttgcta gggatttgtt ttgttttgct ttaggtttaa aactttttga
     2941 aaatgaatat aaatttttaa gcgtaaaaaa gatagaagaa tatcaaaaag atttttatat
     3001 cagtgcttta gatgagcaag tggtggtttt ggaaggcttt gaatttatca atgctaaggc
     3061 aagagagctt attttttcta aagaagataa aaatatggca agaatttctt atcttgtaag
     3121 ccgttataaa gaaaaggctt ttattttaga gctaagtaaa gatgatgaag atattttgct
     3181 tatcaacaaa gagcttaatt tgcttaaact ttgcttacca aaacacagca aagagcttta
     3241 tgaagagatc aaaaaagatg aaattggtgc aaggctttta gaaaatttta acaaggaatt
     3301 tcctctttta gatgaaaatt ttaagcttca aaacaatttt tattccttgc ttggcttgct
     3361 gggtagagtg ctaaatttgg gtagaaattt acaagagagt gctagtgagc ttttaaaaat
     3421 cgctgatgag tcaaaaatgc ctcgtggagt aaagattgat tatcgtttga aagaagataa
     3481 aagttttgat tatacaagga ctttaagatc tgccatgagt tttatgttag caggtgtaga
     3541 tagtgctaat atcgcttatg gagcggttga gagtttggct tatttcttgc gtgatactta
     3601 tgatgaatta agagagaaaa agcaaagtga tttagcactt ataagtggat ctttgtttga
     3661 acataaatct ttacttaaaa atactttaaa acatcttaaa aattgtcagt taagcgatgc
     3721 gccacttagg gtataagatc aaaatttcag gtctagttca aggggtgggt tttcgcccct
     3781 tagtttatga actagctttg aaatcaaagc tttttggaga agtaagaaat gatggttttg
     3841 ggatagaaat catccttgct tgcactcaaa aagaatgtga aaatttcata gaaaatttaa
     3901 aaaatcatct tccaccttta gcaagaatag atcagcttat aatcacgcaa atttctattt
     3961 caaactatga gaattttagc attactcctt ctttagagaa tacaaaaagc acgcctatgt
     4021 taagcgattt tgcgttttgt aaggagtgta aaaaagaatt ttttgatgaa aaaaatccac
     4081 gctttttgta tccctttatc acttgcacac attgtgggcc acgctttagt attataaaaa
     4141 gtcttcctta tgatagggcc catacttcca tgcaagaatt attgatgtgt gagttttgta
     4201 aaagcgaata cgaagatcct aaaaataggc gttttcatgc ccagcccatc agttgtccta
     4261 aatgcaaaat caatgttttt cttaaaaatc caaagggtga aattttagcc aaagatcaag
     4321 aagcttttat acaaagtgcg aagtttttaa aggaaggtaa aattttagcc attaaaggca
     4381 tgggcggttt tcatctcatg tgtgatgcgt ttaatgaaga agctttaaaa actctaagac
     4441 ttagaaaaaa tcgccccaaa aaaccctttg ctttgatgtg taaagattta caaagtgcta
     4501 aagaacttgc ctttatagat gaaaaagaag aagctttgct tggtggggtt ttggctccta
     4561 ttgtgatttt aaaggcaaaa aaagcctttt ctttaatcgc tcctgatgtt gataaaatcg
     4621 gcattatgtt agcttataca cctttacatc ttttgctttt tgagtatttt aaaggaagcc
     4681 ttgtagcaac gagtgcaaat ttaagcggag aaagtattat taaagatgag tttaatttgt
     4741 gtaaaaaact tgataaagtt tttgattttt atttggatta tgatagggaa attatcaatg
     4801 caagtgatga cagcatagct caagtggtaa atggtgaaac tatgtttttg cgtacttcaa
     4861 ggggtttaaa tcccttttat ttggaaagaa attttaataa aaaaggcact tttttagctt
     4921 tgggtgcgga acttaaaaat gaatttgtga ttttttatga aaataaactt ttaatttctc
     4981 cttatatagg ggatttgaaa agtcttgatg tgcatgagag attttttaaa cttttagaat
     5041 tttttaaaca aaattatgat ttgaaatttg atgcgatttt gtgcgataaa cacccgcatt
     5101 ttagctatgc aaaagaattt gaagaaagga ttaaaatttc tcatcattat gcgcattttt
     5161 gtgcggctta ttttgaatac gaagaaaatt ttgcaaaaga tgaaaaggct ttagctttta
     5221 tttgtgatgg aacaggttat ggcgaagatg gtaaaatttg gggtggagaa gtttttgtag
     5281 gaaatttaaa agaatatgaa agaattgcac atttt
//
LOCUS       DARGBD010000108         5106 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.108, whole genome shotgun sequence.
ACCESSION   DARGBD010000108 DARGBD010000000
VERSION     DARGBD010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5106
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.108"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            75..1295
                     /locus_tag="SFZ04_001591"
     CDS             75..1295
                     /locus_tag="SFZ04_001591"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEG8065829.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVIVIGRESSNDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            1308..1751
                     /locus_tag="SFZ04_001592"
     CDS             1308..1751
                     /locus_tag="SFZ04_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEG8065830.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGIHEVSVKLGHAIHAKFNINIKAE"
     gene            1751..2293
                     /gene="hslV"
                     /locus_tag="SFZ04_001593"
     CDS             1751..2293
                     /gene="hslV"
                     /locus_tag="SFZ04_001593"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEG8065831.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            2290..3609
                     /gene="hslU"
                     /locus_tag="SFZ04_001594"
     CDS             2290..3609
                     /gene="hslU"
                     /locus_tag="SFZ04_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEG8065832.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            3606..4481
                     /gene="era"
                     /locus_tag="SFZ04_001595"
     CDS             3606..4481
                     /gene="era"
                     /locus_tag="SFZ04_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEG8065833.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQASHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            4468..>5106
                     /locus_tag="SFZ04_001596"
     CDS             4468..>5106
                     /locus_tag="SFZ04_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065834.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEGKFINLKKIENFNPSNMDLFFKQNRFIELLKHYESKLLLYQDLDTIK
                     HYFSSQIKCLNLNDILDKNSLLKLSSYSIKNLDQNCNFIKHNKIKISISFKII"
BASE COUNT         2002 a          756 c          910 g         1438 t
ORIGIN      
        1 agtaaaaact tttctttaat gaaatttgga tacaatttta caattttcaa atctatttta
       61 acaaaggata tcttatgaaa aatgaagtaa aaaaagtagt tttagcgtat tctggggggc
      121 ttgatacgag cattatttta aaatggcttc aagatgagta taattgtgaa gttgtaactt
      181 ttacagcaga tattggtcaa ggtgaagaac tcgaacctgc aagaaaaaaa gccctttctt
      241 taggcataaa agaagaaaat attttcatta aagatttaag agatgaattt gttaaagatt
      301 atgtatttcc tatgtttaga gccaatgcga tttatgaagg agaatatctt ttaggaacaa
      361 gtatagcaag accacttata gcaaaaactc aagcacaaat cgccctgcaa acaggtgctg
      421 atgcagtaag tcatggtgcc acaggtaaag gaaatgatca agtgcgtttt gaacttggtt
      481 atcttgcttt taatcccgat ttaaaaatca tcgctccatg gcgtgagtgg gatttaaaca
      541 gtcgtgaaaa actccttgct tatgcacaaa aacacggtat tgatatttct aagaaaaaag
      601 gaaaatctcc ttattctatg gacgcaaatt tacttcatat ttcttacgaa ggacttgtct
      661 tagaagatcc tgcacacgca cctgaagaag atatgtggag atggagtaaa agcccaaaag
      721 atgctccaaa tgaaagtgaa attatagaac ttgatttcca aaaaggagat ttagtagcga
      781 taaatggaga aaaactaagt cctgcaggac ttttaaccaa acttaacgaa ctaggctgca
      841 aacacggtat aggacgcctt gatatagtag aaaatcgcta tgtaggtatg aaaagccgtg
      901 gttgttacga aacaccaggt ggtaccatac ttttaaaagc acacagagcg cttgaaagca
      961 tcacgcttga tagagaagca gcacacttaa aagatgaact catgccaaaa tacgcgagtt
     1021 taatttataa tggctattgg ttctcgcctg aaagaatgat gcttcaagcc ttaatcgatg
     1081 agtctcaaat tcacgccaat ggcagagtaa aactcgagct ttataaaggc aatgtgatag
     1141 ttataggacg cgaaagttcg aacgatagct tgtttaacgc agcttattgt acttttgaag
     1201 aagatgaagt gtataatcaa aaagacgcag caggctttat caagcttaat gctttgcgtt
     1261 ttatcatcgc aggaaaaaat ggaagaaaat tttaataaag gaataaaatg aaagtattat
     1321 taatcaaaga tgtaaaagca cttggaaaag caggagaaat aaaagaagta aaagacggct
     1381 acggacaaaa tttcttaatc gctaaaggct ttgctaaagc agctactaat gaagttttaa
     1441 gaaaatatga aagcgacaag aaaaaagagg ctgaaaattt acgctttgaa atcgcaaatt
     1501 tagaaaaact caaagaagaa cttagcaaaa tcactcttga aatttcaaaa cccgtaggtg
     1561 caaatggaag tttgtttggt ggcgtaacca aagatgaaat cgctcacgcc ctaaaagaac
     1621 aaagccatat agaaatcgat aaaaaaagtt tagaatgtga taccttaaaa agcttaggaa
     1681 tccacgaagt aagcgtaaaa cttggacacg caatccatgc taaatttaac ataaatataa
     1741 aggcagaata atgtttcacg caacaacgat tttagcttac aaaggtaaaa ataaatccgt
     1801 aattggcgga gatggacaag taagctttgg aaatacggtg ctaaaaggca atgctgtaaa
     1861 gattagaaaa ctcaacaatg gcaaagtttt agcaggtttt gcaggatcaa cagctgatgc
     1921 ttttaatctt tttgatatgt ttgaaaatct ccttcaaagt tctaaaggcg atcttttaaa
     1981 agcagcgatt gacttttcta aagaatggag aaaagacaaa tacctaagaa aacttgaagc
     2041 catgatgctc gtacttgata gaaatcacat ttttctactt tctggtacag gcgatgtggt
     2101 cgaacctgaa gatgggcaaa tcgcagctat aggaagtggt ggaaactatg cactttcagc
     2161 tgctagagcc ttagcaaaac ataccgattt agatgaagaa gaacttgtaa aatcaagcct
     2221 tcaaatcgca ggtgaaattt gcatttatac caataccaat atcaaaactt atgtaatcga
     2281 ggatgagaaa tgaatctaac tccaaaagaa atcgttaaat ttttagatga ttatgttata
     2341 ggacaaaaaa aagctaaaaa aatcatagct atagctttaa gaaatcgcta ccgcagaatg
     2401 caacttagcc ctgagttgca agatgatata gtgccaaaaa atatcttgat gataggttct
     2461 acaggtgtag gaaaaacaga aatcgctagg cgtttagcta aaatgatggg ctttcctttc
     2521 atcaaaatcg aggcgagtaa atatactgaa gtaggttttg taggtcgtga tgtagaaagc
     2581 atggtaagag atcttgccaa tgcagcttta aatttggtaa aaaatgagca aagagaaaaa
     2641 aacaaagata aaatcgatga atttatagaa aataaaattt tagaaaaact tttgccacct
     2701 ttaccaaagg gtatcagcga tgaaaaacaa gaagaatata aaaacagtct tgaaaaaatg
     2761 agaactaaac taagaaatgg cgatcttgat gaaagcacca tagagataga aatttcacaa
     2821 aatatgttcg ataccaatcc taacctacct cctgaaatgg gtgcaatgca agatatagtt
     2881 aaggttatag gcgttggcag taaaaaagtc aaaaaagaaa tgaaaatcaa agacgctaaa
     2941 aatgctttaa aaaatgaagc aggagaaaaa atcctagacc aagaaagcat caaaagcgaa
     3001 gccttaaaaa gagcggaaaa tgaaggtatt atttttattg atgaaatcga taaaatcgct
     3061 gtttcaagcg gaaattcaaa ccgccaagat ccaagtaaag aaggggtgca aagagactta
     3121 cttcctatag tcgagggatc aaatgtacaa acaaaaatag gtactttaaa aaccgatcat
     3181 attcttttta tcgctgcagg ggcttttcat cttagcaaac caagtgatct tatccctgaa
     3241 cttcagggac gctttccttt aagagtggaa ttagatagtc ttgatgataa agctctttat
     3301 gaaattttaa cacgccctaa aaattcactt ttaaaacaat actctcagct tttaaaaact
     3361 gaaaatttag aacttgaatt taatgatgaa gctattaaag aaatagcaaa aatagcttca
     3421 agagccaatg aagaaatgca agatataggt gctagacgct tacatactgt aatagaaaaa
     3481 ttacttgaag atctaagctt tgaagctgat gagtatgcgg gtaaaaaatt cgtagtggat
     3541 aaaaaaatgg tagaagaaaa actcggagat atcatagaaa ataaagatct tgcaaggtat
     3601 attttgtgaa aagtggcttt gttagtatca tagggcgtac taatgcagga aaaagtactt
     3661 taatcaattc cttattagaa gaaaaaatcg ccctagtttc tcacaaacaa aacgccacaa
     3721 ggcgtaaaat caaagccata gtgatgcatg aaaaaaatca aatcattttc atcgataccc
     3781 caggacttca cgaaagcggt gctacgctta atcaactgct tgtccaaagt gctattaaat
     3841 ccatgggaga ttgtgatgtg attttatttg tggcaagtgt ttttgatagt acaaaagact
     3901 atgaaaattt ccttagtcta aacccacaag catcacatat catcgcttta aataaagtag
     3961 atttaaccga caatgctacg cttttaaaaa aacttagcga atatgcaaaa tttagccaac
     4021 attttaaggc tatcattcct tattcttcta agaaaaaaag ctataaaaaa ggcttgttag
     4081 atgagatagt aaaatacctt gatgaacatg agtattttta tgatcctgaa tttttaagtg
     4141 cgagtagcga aaaagaactt tatagagatt tcatacttga aagtatttat gaaaatttaa
     4201 gcgatgagct tccttatagt agtgaagtgc ttatcaatcg caccaaagac acacctaatc
     4261 ttttaatcct agaagccaat atcatcacag atacaaactc tcacaagggt atgcttatag
     4321 gaaaagaagg ggcaacttta aaaagaatag gcaaagatgc acgctttaaa atttcaaaac
     4381 ttgcacaaaa aaaagtactt ttaaagcttt tcgtaacagt gaaaaaaaac tggcaaaaag
     4441 atgaagaatt tttaaaaaaa cttttaaatg atgaaaatta attcattaaa taaaataaat
     4501 tttataaaat ctacagattt gctttatgct caaagaacag gaatatccaa agaagacgaa
     4561 ctttttaaca atttaaccgc agattttaag ctaagcaaac cctttgacta tcaaatagct
     4621 ttttttaaac ataatgaaat ttatcattgt tttttagcgc ctgtttacaa attgaaaaaa
     4681 agtcgttttt gctttcctga gcctttaatt tttcaagctt tgtttgatga aagatttatt
     4741 gaggaaagtg attattgtgt tttaaattta tatgatcaaa ctttatattt atatttttac
     4801 caagagggaa aatttatcaa tcttaaaaaa atcgaaaatt tcaacccaag caatatggat
     4861 ttatttttta aacaaaatcg atttatagaa cttttaaaac actatgaaag caaattgcta
     4921 ctttatcagg atttggatac aatcaaacat tacttctcat ctcaaataaa atgtttaaat
     4981 ctaaatgata ttcttgataa aaatagttta ttgaaattaa gttcatatag tataaaaaat
     5041 ctagatcaaa attgtaattt tatcaagcat aataaaataa aaatatctat ttcttttaaa
     5101 attata
//
LOCUS       DARGBD010000109         5101 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.109, whole genome shotgun sequence.
ACCESSION   DARGBD010000109 DARGBD010000000
VERSION     DARGBD010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5101
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.109"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..727)
                     /locus_tag="SFZ04_001597"
     CDS             complement(<1..727)
                     /locus_tag="SFZ04_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG8065835.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSRWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YAYIPDFKTLKSQFVNIKNKNYEC"
     gene            complement(720..1946)
                     /locus_tag="SFZ04_001598"
     CDS             complement(720..1946)
                     /locus_tag="SFZ04_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065836.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNVASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFTKELALALKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKYDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            2073..2657
                     /locus_tag="SFZ04_001599"
     CDS             2073..2657
                     /locus_tag="SFZ04_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEG8065837.1"
                     /translation="MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIAEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNITIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(2701..3084)
                     /locus_tag="SFZ04_001600"
     CDS             complement(2701..3084)
                     /locus_tag="SFZ04_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065838.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQVEDYSSSGNSDFMDILNK
                     ANEKSSGDALNSSNSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLAQQGANEQSKNNTLLNDLLNAI"
     gene            complement(3161..3496)
                     /locus_tag="SFZ04_001601"
     CDS             complement(3161..3496)
                     /locus_tag="SFZ04_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065839.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(3486..5063)
                     /locus_tag="SFZ04_001602"
     CDS             complement(3486..5063)
                     /locus_tag="SFZ04_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG8065840.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADVLFLDEPTNNLDLEAIFWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEFKGISKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIANAINPDSGSIHLGVTIELGYFPQDASNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
BASE COUNT         1852 a          900 c          608 g         1741 t
ORIGIN      
        1 agcactcgta atttttattt tttatattaa caaattgact tttaagtgtt ttaaaatctg
       61 gaatataagc ataaccacta agcgtatcta taacgataca aagagcatgc ttttttgata
      121 acaaacgtat aatgcaatct gaattattct ttgctaaagt tttttcatat gcataattgg
      181 cattttttaa cggagaatac actctgccca tttcatcaaa tactaatcta gtaaatcctg
      241 aacaagatcc tttgaattca accttttcta ttccgaatct ttttgtaaga ttaaatcttt
      301 gtgtagtttt ttcatcatct ttactaataa ctccactttg acctgaattc attaatttgt
      361 tatgattgat tacatcaaca gcaatttctc tatctatatt gatttcagtt ttacctaaat
      421 tagcatttcc atcgccattt ttatccaaga aaatagtata tgtttgatca taacctgtgg
      481 cagctgattt tataaaataa atctgccacc tacttttaaa ccactctctt tttgcgatag
      541 ccaactcatc aactcttata ccttcttgca tcatggctaa actttgggta tattggatat
      601 cattaagaat ttgtattgcg ccttctagta aattgtcttt ttttaagtaa agactgccta
      661 aattaaaaac tatacctaaa ataagaatta taaacacaaa ttctaacaaa ctgaaagctt
      721 taatcatagt ttaaaatctg atatactttt tcatattttc caagttttac tttaacaatt
      781 tttttgtcca tatcatactt atcggcttgt tttaaagctt ttaaataaaa cttattgcta
      841 ttttttattc cataaaatcg caatcttttt tgcaaacttg gggctgttgc aagctctaaa
      901 acatcttgtt tttttaatgc tagcgccaat tctttagtaa aatgataatt attggcaaaa
      961 tgacgatttg gattgtttat aaaataatac aataattgat tagcgacgat taaaaagtaa
     1021 caaaatatca aaaaaattat agaacattct ataaagattt tataccttaa tcgaaaaact
     1081 ggtaatctca ccctataact ttgcattaaa gtttttataa gcaaaggagt gcaaataaca
     1141 caaaaaggca aaaaatcatc taaaaaaagt ttttgtctta aagaaagcaa caaacaaaat
     1201 acaaatgtta cgctcattaa aaaccataat aaatttttat atttctgaaa agtcaaacga
     1261 taaatagtat aaaaaaaata cacaaaaacc aaaggagaaa aacatgcagc aaaaattcct
     1321 aaagtatcta aaaaataacc tcttggacga ccacctgtat caaaaccata aaaactgata
     1381 ctcgctccaa acaaaacaag agataaggta aataaaatag catttctttt ataaatccca
     1441 aaaaagaaaa aagttaaaaa taaaatatta aaagatttat caacaaataa tactataatc
     1501 aataatatat aaaaaagcca ttttttttca tattcgtaag cacataatat agcaagggtt
     1561 aaaaaaatca ccaaagatgc gacattaacc agtaaagcac ttgcaacagt acccggcaat
     1621 aaaacaaata acaataaaga aaaaaaagca tcaattttag ttttagtata ttttaaagct
     1681 agcaaataca aaagcaaaca acttaaaaaa tgaaaaaata aaaaaggaag ccttaaacca
     1741 aaatcatttt gcccaaaaat aaaagttcca aaatgagata tataataaag caaactatgg
     1801 gaaaaaataa gtgatttacc ctgctcacca aaataaatat cagcttcatc agcactaata
     1861 ctcagtgttg aaattccata aagcaaagcc aacaaatcaa gactaagtaa aatgatgata
     1921 agtttataat ttttgatttt ttccataatg aaaattttac aaaattaaac ttaaaatatc
     1981 aatgcaaatc atacaaatat caaatatctt aaaaattaac atcaaattga ttttagtttt
     2041 tataagtata attttaaaca aaaaaggcaa aaatgcaaac tattgatcaa atttttcaaa
     2101 cacaaatcga tattaaaaaa tctactttct tatcttttct ttgccctttt aaagatttta
     2161 aatttttaat agaaacacta aaaaaagaac atccaaaagc cgttcatttt gtctatgctt
     2221 atcgtgtttt aaatgatttt aatcaaattg cagaagataa aagtgatgat ggagagccta
     2281 aaggaacttc tggaatgcca actttaaatg ttctaagggg ctatgatctt atcaatgcgg
     2341 ctttaatcac tgtaagatat tttggcggta taaaacttgg tacaggggga cttgtaagag
     2401 cctatagtga tgcggcaaat gccgtgatca ataattcttc tttactttca tttgaattga
     2461 aaaaaaatat aaccattgct attgatttaa aaaatttaaa tcgttttgaa cattttttaa
     2521 aaacttattc ttttaatttc acaaaagatt ttaaggattg caaagctata ttacatatca
     2581 aattaaatga aaaagaggag caagaatttg aaattttttg taaaaatttt gcaccttttg
     2641 aaatagagaa attataaatt cttgcaagta aatacaaaag ctccaaaatg gagcttttga
     2701 ttaaattgcg ttcaataaat catttaacaa agtattattc ttactttgtt catttgcacc
     2761 ttgttgcgca agatcattgt gaacgctagc actttgagct ctcatagaca actcgccttc
     2821 attttgtcta aaacgataag cgtaaacatt tgacatttga gcataattac ttaaatttga
     2881 atttgagttt tgcgcattgc tttgaaaact attgctagaa tttaaagcat ctccgcttga
     2941 cttctcattc gccttattta atatatccat aaaatcagaa tttccagatg aagaataatc
     3001 ttcaacctgt ttatccacct gtttatactg accactaata gcatcgtatt catacgagct
     3061 gatcgttcta taatttacct gcatagcttt ctcctttcaa aatatgcaaa aactatacaa
     3121 gcaaaaagta ttcctttttt tatgtaaaaa ttaatgtttt tcaatcatga tgagtaggca
     3181 aatgctccac atcaagctca ttattggcta taaattcttc cttggctttt ttacagtttt
     3241 catcacgcat tttgcggtat tcattgcgaa tcgtgatttc tttatcgctt agaggtctat
     3301 cttctaaaaa actgatatga aaataagtat catcgctctt tgaataagtt ttataaaaat
     3361 ctatataatc aaaataatcc ttgccattat caaactctac gacttcttct atataaatcg
     3421 taggcccaaa acccttgtga ttttgcgtat agtgcccaaa acctgcgctg tattgaattc
     3481 taaatttagc catcattttc tcctaaaaat tcttgataag ttccacgaaa atctgtaagc
     3541 ttaccatttt ctaaatgcca aattctatta gcaaaagcag aaactaactc cctatcgtgg
     3601 ctgatacaaa gcactacacc tttgaaatta tacaaagctt cacctaatgc aataatactt
     3661 tcaagatcta aatggttatc aggttcgtct aaaagcaaga aattcggacg ctctagcatt
     3721 aaacgagaaa gcattaaacg atgtttttca cccccactta aacttgctgc cattttttct
     3781 tgatcgctgc cactaaaaag cattctacct aaacacttgc ggatttcatc tagatcttta
     3841 aatttttcac tcatcagcca ttcataaagt ttcaaatttt cacaaattaa attacttgca
     3901 tcttgaggaa aatatccaag ctctatagtt accccaagat gtatagatcc actatctgga
     3961 tttatagcat tggcgatgat ttttgccaaa gtacttttgc ccacaccatt tgccccgatc
     4021 aaagcgattt tatcattttt ttctattttt agctccaaat ttgaaaacaa ttgtttatca
     4081 taagccttgc ttataccttt aaattctaaa acttcattac ctatttcacg attggttcta
     4141 aaaactatgc taggatctct acggcttgaa attttaatct cttcaagctc tagtttttca
     4201 agtgccttag cacggcttgt ggcttgtttt gccttagaag catttgcgct aaaacggcga
     4261 atgaaatttt ctaattcttc tctttctttt aaggttttat cacgtttaag ctcagcttgt
     4321 tttgccaaaa gcgttgaagc catataccaa tcatcgtaat ttcccgcaaa atcacgaatt
     4381 tgtttaaaat ccacatctaa aatccttgtg caaattttat ttaaaaaatg tctatcatga
     4441 gagataacaa ccaaagttcc ttcatgtctt aaaagctcat tttcaagcca aaaaatcgcc
     4501 tctaaatcaa ggttatttgt aggctcatct aaaaaaagca catccgcacc caaaaacaaa
     4561 acttgagcta gtaagacttt aaatttatcc gcactttgca aggtgctcat caaagcatca
     4621 aaatctttaa tctttaaaga acttaaaatt ttttcacaac gcgtttcaca atcataattt
     4681 ggatcttctt cagccgttat tatctcaagc tcacctaaac gctcattgat ctcatctgta
     4741 aattcctcgc tcatataaag cttttctttt tcttttaagg cctcatataa acgcttattt
     4801 gcacacatca ctgcatcttt gatggtgtag ttttcaaaag caaattgatc ctgtcctaaa
     4861 actgcgattt ttaaaccttc atcaaatact atttcaccac tactcgactc aatttctcct
     4921 gaaagaattt tcaaaaaagt cgattttccc gcaccattag caccgataag tccgtatctt
     4981 tgtcctcgaa caagttttaa attaacattt tcaaataaaa gctgatttgc aaaacgcata
     5041 gtaagatttt ttacttcaac catgattttc cttaaatttt ttacttataa aaatttttaa
     5101 g
//
LOCUS       DARGBD010000110         5076 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.110, whole genome shotgun sequence.
ACCESSION   DARGBD010000110 DARGBD010000000
VERSION     DARGBD010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5076
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.110"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            275..1183
                     /locus_tag="SFZ04_001603"
                     /pseudo
     CDS             275..1183
                     /locus_tag="SFZ04_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(1218..1859)
                     /locus_tag="SFZ04_001604"
     CDS             complement(1218..1859)
                     /locus_tag="SFZ04_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG8065841.1"
                     /translation="MRKFFCKFVLTLVFCSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSYKLADVYFVSYFLNKQRNFSNLNEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(1943..3380)
                     /locus_tag="SFZ04_001605"
                     /pseudo
     CDS             complement(1943..3380)
                     /locus_tag="SFZ04_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            complement(3416..4216)
                     /gene="dsbI"
                     /locus_tag="SFZ04_001606"
     CDS             complement(3416..4216)
                     /gene="dsbI"
                     /locus_tag="SFZ04_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HEG8065842.1"
                     /translation="MSYIKMKDNCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKPNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            complement(4213..4875)
                     /locus_tag="SFZ04_001607"
     CDS             complement(4213..4875)
                     /locus_tag="SFZ04_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG8065843.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNS
                     LIEIFSYHCTHCYDHRKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFATFK
                     DGVNKIDPTDKNSLTHKVAEAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADFE
                     NFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAINSPEALIEITKELSK
                     QK"
BASE COUNT         1778 a          842 c          709 g         1747 t
ORIGIN      
        1 gccttccaag attttgaaaa acgcagttgt ctaagtcttt tttttcttga atgcttaaat
       61 ttttcattaa cctagccttt aaaaatattg caagatttta ttatagcgaa aaaactttat
      121 ttttgcttta aatatataag ttctatttta aatataaacg aatattattt taaggtttaa
      181 agcttttttc ttaaaatgta attaggtttt attgactttt tctaaataaa gtcttatact
      241 gaatttaaat tacgcaaaat aaggagggaa attgatgaat aaattttcta tagttttaac
      301 tttgttgtta tgtggaagtt gtgctttagc cttagatcca aatttggaaa aaactaagag
      361 tgcaacaggt attgatctgc ctactgccaa atggttattt tgggaaataa aattcttaat
      421 gaaacaagca aatatgtggg tccacaagcc aaagatccta aaaaaagatt tgcgggaaat
      481 aatctttctt gttcaagctg tcatgctaat ggtggaagtg tgcaaaatca atcgggtttt
      541 gtaggaattt aggcaagatt tccacaatat aatgcaagag gagataaagt aattacctta
      601 gcagatagga tcaatggctg ttttgaacgc tctatgaatg gcaaaagaat gcctagtgat
      661 acacctgaaa tgaaagccat gctaacttat atgcaatggt tatctcaaga agttccagta
      721 ggagctaaga tagaaggata gggacttaag aagatagatt tcatcttaag agcagatgat
      781 cctaaaaaaa ggtaaggcaa tttatatgga taaatgtgcc gtttgtcatc aagaaaatgg
      841 cttagggctt aaaaatgagg atagcacagg ggcgtattat ctttatccac cactttgggg
      901 tgatgatagt tataatacag gaactggaat gtatcgtctt atcaaagctg cttcttatat
      961 taaagaaaat atgcctcaag gtgcgcctga cttaagtctt gaagatgctt atgatgtagc
     1021 agcttacatg aattcacaag ctcgtcctat taaagcaaat agaaataaag actttccaga
     1081 tagaaaggtt aagcctttag atatggatgt aggaccttat gatgatagct tttctacaac
     1141 ccaacatcgc tatggacctt atacaaatat gatcaaaaaa taatttttaa ggcaattttt
     1201 attgccttaa aaatttatta tttcatatta cttaattttt taactagatc ttctaaatct
     1261 tgcatcgaat tgattgcact tgggttaatt tgatattttc cattaacaac aaaagcaggg
     1321 gtgccatagg ttttagctat atcattagct ctttgaaact cgcttaaaat ttctttagct
     1381 tttggggtat ttaaaaaatt taatacttca tttttattta cattcatagc ctttaaacct
     1441 atgtcgtaaa attcatttaa atttgaaaaa tttctttgct tgtttaaaaa ataagaaaca
     1501 aaataaacat cagcaagttt ataagataaa ctatcagaat aactcgcgtc tttaccattt
     1561 tgttcatctt tgtattgagc aaaggcaaaa agctcattca tttctttgga aaattcccca
     1621 ttcattaaac ttacaggata gagtttaaaa tgtaaatttg gaaaagcttc tctcagtttt
     1681 tcaagggttc caaatttatg atgattgtaa caatgtatac atttataaga aaatgcttct
     1741 attacactat tttcagagct aggtaaactt ggattaagag taataaaact attatttgct
     1801 aatgcaaaac ttgaacaaaa tacaagcgtt aaaacaaatt tgcaaaaaaa tttacgcata
     1861 ttatatcctt ggttaaataa aattttcaaa gataatttta tttaaaaaaa ataaataaac
     1921 ccaaaaataa atttgggctt atttattttt taggattgaa tgcttgatca acactaaaag
     1981 gcattgcttg ataacccgtg cctgaaccgc tgaattgaat ttgaaccgaa ggctccttag
     2041 cgccccagtt aaattcatca attttaggtt ttggttctcc aagacttaca cctttactaa
     2101 gattaaaagc cattccagcg ttgcactata aaccataata gaatctttat ctggttcata
     2161 ttgagttaaa gaagttacag gataaaacca ttcattgtca tttttatcta caggttgcaa
     2221 taaatatttt tgaaattctt tattccaccc tttatatgcg cccaattcct acctatacct
     2281 gctatatctc caaatttgtc gctttcatcc attttggcaa gctcttcatc gcttaaagtt
     2341 ttacccactt tacttgcatc tatatttaaa cacactgcac tttgatctaa agttttgata
     2401 atagtacttc tataaggatc taaaatctca tacaatctcc aatcatcaac aacattacca
     2461 tcctcatcta cttctataat agtatcacac actgtgcgta catgcttact atcttggacg
     2521 caaagtattt gttgaagaaa taatgcccat tttttgcata ttgtccatag catgagaaaa
     2581 aatctatata ggcagcaggt aatttgcgat tgaaaatttc tcttcccaga catcgtattt
     2641 tacatatctt tgaccaaatc cccaagttaa agctccatct ttgttttgac gaaaacttat
     2701 cataattcca cgattgtaaa tattacccca gttcattagt ttattgttat cataatacca
     2761 tctgatttca cccttggtat cttataataa agacatttga attttcatcc cattccatag
     2821 caccacctac aagattattc catacagatt atgagtcttt gccagattat tttccaggag
     2881 cattatttac taaatatagc ctatctgaaa attttggatc catttttaat actttcacat
     2941 tttcaaaaag agttcctctt tgatcagtgc cttccgcttg gttctatgct agcccatgga
     3001 gttgtaattt tataaatctc atcaatgact ttttgacttt taccatttgc ggttttagta
     3061 taacttacct ttactataag aaggataaag tccaaaaata ggaattccac catacgtctt
     3121 agccatttta gaattcacat tattaagaaa tagtttgacc atttgatttt tttatatcgc
     3181 ttaagacata accccattat tcatgataat agcagtcaaa ggagacaatc cataaggatt
     3241 cattttaatc atacccattt gtccttgaat ttgccaatct attttcactc cactaggacc
     3301 acccatggcc attaaagcat taggtgcaag tagggtagaa cccgccaaaa ttccatgcaa
     3361 agagttttgc taagtctcat gatcaatcct ttaaaattat ttaagacatc ctattttaag
     3421 agtatcttaa aacgacttga tttaaactag ctatattttg attcggattt tttgattcgc
     3481 ctataaattt aagcaccaaa accaaagcaa caatcaccaa tgcaaaaatt ttagcattag
     3541 gtttattttt atctaaaaca taggctataa acattgcaaa aagcacgaca aaacaacata
     3601 aaaatgctat aagacagcag attgccatat tcataaactt taaactagga atcaaatacc
     3661 aaccattact ataaagccca ttttcaaaat caggtggagt tcctataaaa aatttttgaa
     3721 aagcattaag atgattataa gcattttctg gaactacagg ggtatccatc ccgcattctc
     3781 ctgttggcaa aaaccaacta ggagcccatt tatacaaagg taaattaaat ggataaatag
     3841 gaatttcacg acatccatct acgcctgcaa aaggattttc agaatgaacc acttcatgga
     3901 tatgatttaa agttagacaa tgctccaagc caagccaaat tccataaaaa gctaagctat
     3961 aagaaaaaat ttttataata ttatttgcag ggttgattaa tgcaatcata ccacctatag
     4021 ccataacaag catatcaaat cttatataca cacattgttc acaaggtttc ataaaaagat
     4081 attcttgaaa taaaaaatgt gctatacaag taagccctat agtaactata atcaaaatca
     4141 accaaggttt gcgcgtatct tgccatttgg aaagtgaaaa atttctgcaa ttatctttca
     4201 tttttatata actcattttt gcttgctaag ttctttagta atttcaatca aagcctctgg
     4261 agagttgatt gcacttggaa cgatttgata ttttccatta acaacaaaag caggggtgcc
     4321 ataattttgc gaaataggat tggcaatttc ataacttttt aaaagctctg cagcctctgg
     4381 agtttttaag aaattttcaa aatcagcttt acttacattc attgctttta aaccgacact
     4441 ataaaaagct tcaggatttt taccattttc ccatctttgt tttttcttaa aatatgcatt
     4501 aaaataagct tcagcaactt tatgagttaa gctattttta tccgtaggat caattttatt
     4561 tacaccatcc ttaaatgtcg caaaagcaaa aatttcatta gcttgccttc cataatctcc
     4621 catagaactt acaggataaa atttataagt taaattaggt aatttttctt taactttacc
     4681 catggtatta aatttgcgat gatcataaca atgagtacag tgataagaaa aaatttcaat
     4741 caatgaatta tcagcgttag caataggatt tttaagaatt acatattctt taccttcact
     4801 taatgcgcta gcacttatac ctgctaaaaa agcacataca acaatagatc ttgctaattt
     4861 tactggaaat ttcattaccc tctccttgaa atttggtttt gataaaactt tttattaagt
     4921 ttttatgtaa taactattat aaaactatta aaataaaaat attcttaaaa aatgttataa
     4981 ctaagaatat ttactttaac taaaaatcaa gaatagggga ttaaaaaatt taatgcacaa
     5041 gttatcattt ttatgtatat tttgataata atataa
//
LOCUS       DARGBD010000111         5006 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.111, whole genome shotgun sequence.
ACCESSION   DARGBD010000111 DARGBD010000000
VERSION     DARGBD010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5006
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.111"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            45..1181
                     /gene="pseA"
                     /locus_tag="SFZ04_001608"
     CDS             45..1181
                     /gene="pseA"
                     /locus_tag="SFZ04_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HEG8065844.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
     gene            1178..1783
                     /gene="hisH"
                     /locus_tag="SFZ04_001609"
     CDS             1178..1783
                     /gene="hisH"
                     /locus_tag="SFZ04_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG8065845.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKEFGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFIRL"
     gene            1784..2530
                     /gene="hisF"
                     /locus_tag="SFZ04_001610"
     CDS             1784..2530
                     /gene="hisF"
                     /locus_tag="SFZ04_001610"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG8065846.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGRAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(2495..2968)
                     /gene="pseH"
                     /locus_tag="SFZ04_001611"
     CDS             complement(2495..2968)
                     /gene="pseH"
                     /locus_tag="SFZ04_001611"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HEG8065847.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(2965..3789)
                     /gene="pseG"
                     /locus_tag="SFZ04_001612"
     CDS             complement(2965..3789)
                     /gene="pseG"
                     /locus_tag="SFZ04_001612"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEG8065848.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELDSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            complement(3773..4471)
                     /gene="pseF"
                     /locus_tag="SFZ04_001613"
     CDS             complement(3773..4471)
                     /gene="pseF"
                     /locus_tag="SFZ04_001613"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HEG8065849.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            4550..>5006
                     /locus_tag="SFZ04_001614"
     CDS             4550..>5006
                     /locus_tag="SFZ04_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8065850.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDIKAIVFVI
                     GGYGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARISNNKKYSASISFMEEDLLS
                     LSKILLDFGINPQNLDCKNSTKYYELLIQHIITLKSQGKLAQNYQAKFTS"
BASE COUNT         1711 a          653 c          876 g         1766 t
ORIGIN      
        1 tttaattata acgatatata tttaagacta attaaaggaa atttatgaaa ttttgtaaaa
       61 aatgtgtgat gccagatact aagcccgatt tacattttga tgaagaaggt gtttgtgatg
      121 cttgtcgttc tcaagaagct aaaaatcaaa atattaattg gcaagaaaga gaaaaagaat
      181 tttttgagct tataaaaaaa tacaaaaaac atcctgttta tgattgtgtt atcggagtaa
      241 gtggcggaaa agattctact tttcaagtgg ttaaaatgct tgaacttgga cttaatcctt
      301 tgtgtgtgtg ttttgagcct agcgtaccta cgaaaatagg gcgcaaaaat ttagacaatt
      361 taaatcatct tggcgtggat ttgatccata tcaagcgtga tccaaaagtt tatcaaaaac
      421 ttgcccgtga agcttttata agaacagggg ataatgagtg gcaaaaccat ttgggaattt
      481 ttacttctgt tccacgcata gcggtaaatt ttggagtgcc tttgatcatc tggggagaaa
      541 gtccgcagat agagtatggc ggtcctgcga gtagtaaaaa taaaaatatt ttaggcagag
      601 agtggcttga agaatttggc gggcttttag gaaatcgtgc ttctgatatg cttggggtaa
      661 atggtatcac tgaaaaagat ttgtttttat atacttatcc aagtgatgaa gaacttcaaa
      721 gagtaggggt tactgggcta tttttagggt attattttaa atgggattat aaaaaaattc
      781 ttgaaatttc taaaaaatat ggttttttaa ctctagatca tcctgttgag actacttatg
      841 aaaattttga aaatttagat tgttattcta atcatgtgca tgattattta aaatactgca
      901 aatacggctt tggtagagca acggataatg cttgtttgga tattcgttta ggttatatca
      961 gccgtgaaga aggggtgcgt ttggtacaaa aatacgatgg caagccccct aaaaaggcta
     1021 ttaaaaaata ccttgaattc agtggtttta gcgaggaaga atttcaaaaa atagtagatt
     1081 cttttaccaa taaaaaaatt tttaaacgtg atgaaaatgg taaatttata agagattatg
     1141 atggttcttt ggtaagaaaa gacgagtgtg ttttaaaatg atagcgctca ttgattacaa
     1201 ggcgggaaat ttaaactctg ttgctaaggc ttttgaaaaa ataggagcta taaatttcat
     1261 agctaaaaat ccaaaagatt tgcaaaaagc agataaattg cttttacctg gagtgggatc
     1321 ttttaaagaa gcgatgaaaa atttaaaaga atttggtttt atagaagctt taaaagagca
     1381 agttttagta caaaaaaaac ctattttagg catttgtttg ggaatgcagc tttttttaga
     1441 aaggggctat gaaggtggag tttgcgaagg acttggtttt atagaaggtg aagtagtcaa
     1501 atttgaagag gatttaaatt taaaaatccc acatatgggt tggaatgagc ttgaaatttt
     1561 aaaacaagtt cctttgtatc aaggcataga taataagagt gatttttatt ttgtgcattc
     1621 tttttatgtg aaatgcaaag atgagtttgt aagtgctaaa gcacaatacg gacataaatt
     1681 tgttgcatct ttacaaaaag atcatatttt tgctacacaa tttcaccccg aaaaaagtca
     1741 aaatttaggc ttaaaacttt tagaaaattt tataaggctt taaatgttaa aaactagaat
     1801 tatcccttgt gttttgttaa aaaacggaca acttgttaaa agtatagaat ttaaagattt
     1861 tcgcactata gggcatttaa cttcaacaat gagaatttat aatgcacgca atgttgatga
     1921 gcttattatc ttagatatag atgcttcaaa aagtggagaa atagattttg aaagtataga
     1981 agatcttgct aaagaatgtt ttatgccttt aactataggt ggcgggataa aaacccttga
     2041 agatatacaa aagattttaa atttaggtgc ggataaaatt tctatcaatt ctaaggcctt
     2101 agaagatatg gattttataa gtaaagcggc taatcgtttt ggttctcaat gtatagtttg
     2161 ttctatagat gttaaaagaa aaggagggca attttgtgtt tatgacaggg gaaatttact
     2221 tgaaaaaagt cctttagaac ttgctttaga atatgaaaaa aaaggagctg gagagcttct
     2281 tttaacttct gtggattttg aaggaagggc aaagggttat gatttagaac ttttaaagat
     2341 ctttcaaaat aaacttaaaa ttcctcttat tatcaatgga ggacttagca atccaagtga
     2401 tggagttgag gctttaaatt taggtgctga tgctttagcg ggtgcttata tttttcattt
     2461 ttctaagtat acccctaaag atgtaaaaga agaattagct aggcaaggct ttgcagtcag
     2521 attgctttag gcaaatatgg taaaaatctt tatcttcatc ataaatagta aaatgatttt
     2581 gttgatataa ttttaaagct ttgcgattgt ctttgaaaac ataagcttta agagtattta
     2641 cttttaagtt ttcaaaagcg tattttataa tttcattcat taaaatttgt cctacgcctt
     2701 ttaaattagg ttttgcgtaa agtccaaatt cgcaagattt agttgtgata ttgacaaaat
     2761 caattacgcc gataatctgt tcatcttgaa aaactaaaaa atattttttg ctagaatctt
     2821 gatgtaattt ttttaaaaat cttaaatgtt cttcaaaatc aatatatttt gttttcataa
     2881 attgattgat atcggggtga ttgcgccatt taaaaatcag ctctatttct tgagaattaa
     2941 gttctgtgaa atttttaagt tttatcaata cttatactcc acttcatacc cttttttagc
     3001 aagccaagtt gctgtagatt cttgattttt aacataacaa atagctttga aatttgcctt
     3061 taaaagcaag gcttcattga ctaaagaact tgcactaatg atgagtttat tgctttcatt
     3121 catcaatttt gcaatatttt catgatcgat aaataatcta atattgttat gtaattttgc
     3181 aaatttttgc aattttttaa gattaggatt agaagagctg gttgcaatgc tgatgatttt
     3241 tgttttaggt aattcgctag caatttgtaa agaaaggttt tttatatcag ttccacccat
     3301 gcaaatgaaa aaatcatatt ttttttctct attttctttg gcctcttgat aaaattcttc
     3361 cctgattaaa gcataagaaa aaccacatct tacttcgcat ttaaaaggca ctaaaccttc
     3421 ataatcactt gcttttgcat aggcattgac attgagtaaa atatcacaat gatgaggctt
     3481 tatttcatca tcaaagctta gaattttcac ccctgtttca agcttgatca gtttttcatc
     3541 atctacgctg atgccatagt gatcaatgat aagaagttca aatttttctt ctttgatgag
     3601 attgataagt tcgtaaatgc tttcactatc aagctcataa acaggataag gaatttcatc
     3661 gatcaaagag ccttctaaag gcaaacaagc aaaacttaca tcgctatatt gtttagctaa
     3721 gactagatca cgtttaatgt gtccaaagcc tatttgactg gagctatcgc ttctaaaaag
     3781 cactttcatg atttacctta taaagtattt ttgcaaattc caaatcttgt atggtgtcta
     3841 tatcgcaaac taaatttctt ggcaatacaa acacgctaga atgaggttta aatataaaat
     3901 cttcctcaag ccaagctttg cttgtaccaa aataaaaagc tcctgcatca tgataagctt
     3961 ttgttagatc ttgtgaacga cttttataat gtttttcatc aaacatataa acttgattgt
     4021 tttcatttag ataaaatgcc ctttgtatag gatactcaaa ctcagtagca gcaaataaaa
     4081 acttgctttg attttgtata aatttttcat aggcttgttt taaaatgtct ttatttaaca
     4141 aaggagcagt agcataaagg cagcagacat gatcataaat ttgattttgg ctttgtaaaa
     4201 tttctatggc attttgcact acagcagtgc ttgaagcata atcatcgctt aaatttttat
     4261 cacgcacaaa aggagctttt gcaccgtatt ttaaggctac ttctatgatt tcttcatcat
     4321 cgcttgaaag caccacttca tcaaaaatac ctgaatttaa agcattttct atgctataag
     4381 agattaaagg tttacctaga aaatcaatga tattttttct aggaattctt tttgatccac
     4441 cacgagcagg gattatgcaa agatttttca tagttaagcc ttgtttttgt gttttatttt
     4501 actaaaattt aagtataatt gtctttaaaa tacaataaaa ggcttaaaat tgcttataaa
     4561 ccaaaccttt gaaattgatt cttgtgatga tgtagaatta aatataaaaa gaactagcaa
     4621 acttgaatac cgcattagct atgatgatga aaaagatatc aaagccatag tttttgtcat
     4681 aggaggttat ggagctaatg caaatatttc ttttttagat tttgataggg aatatattgc
     4741 taaaaatttt gatgttgtag tggtacatgt tttttatcat tgtttttgtg caagaatatc
     4801 aaataataaa aagtatagtg cttctattag cttcatggag gaggatttgt taagtctatc
     4861 taagattttg ttagattttg gcattaatcc acagaatctt gattgtaaaa attctaccaa
     4921 gtattatgaa ttgcttattc agcatattat tactttaaaa tcacaaggaa aattagcgca
     4981 aaattatcaa gcgaaattta cttcaa
//
LOCUS       DARGBD010000112         4827 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.112, whole genome shotgun sequence.
ACCESSION   DARGBD010000112 DARGBD010000000
VERSION     DARGBD010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4827
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.112"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(26..1357)
                     /locus_tag="SFZ04_001615"
     CDS             complement(26..1357)
                     /locus_tag="SFZ04_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEG8065851.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAVKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(1359..1814)
                     /gene="accB"
                     /locus_tag="SFZ04_001616"
     CDS             complement(1359..1814)
                     /gene="accB"
                     /locus_tag="SFZ04_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEG8065852.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            1960..2520
                     /locus_tag="SFZ04_001617"
     CDS             1960..2520
                     /locus_tag="SFZ04_001617"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEG8065853.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            2570..3574
                     /gene="pseB"
                     /locus_tag="SFZ04_001618"
     CDS             2570..3574
                     /gene="pseB"
                     /locus_tag="SFZ04_001618"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HEG8065854.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSTAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINAIGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTESF
                     "
     gene            3576..4706
                     /gene="pseC"
                     /locus_tag="SFZ04_001619"
     CDS             3576..4706
                     /gene="pseC"
                     /locus_tag="SFZ04_001619"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HEG8065855.1"
                     /translation="MLTYSHQNIDQSDIDTLKKALKDEILTGGKKVNEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGVKEKIVLTTPLTFAATANAALMAKAKIEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFAGNSVEMDEISNLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELIAKIKLLRSHGIVKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKDY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKLLGEIKLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCE"
     gene            4699..>4827
                     /locus_tag="SFZ04_001620"
     CDS             4699..>4827
                     /locus_tag="SFZ04_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HEG8065856.1"
                     /translation="MNKLDFRSQDFSQTGKAMYELACELFPIPRSITGQGFRDSLEI"
BASE COUNT         1635 a          857 c          806 g         1529 t
ORIGIN      
        1 aaaatttccc tttaataggg aaattttaat gtcttgcaag ataatttgta tcgtagttat
       61 tattaataaa atcaggattt tccatcatag aaagatgaaa atctttggtt gtttttatcc
      121 cacttataag caactcatct aaagctactt tcatttttgc aatagcttta ttacgatctt
      181 ctgcccaaac tacaagtttg cctatcatag aatcataata aggaggcacg ctatagtctt
      241 gataacaatg actttccatt ctgacattgc gtcctgcggg tggaatgtat ttagtaatct
      301 tacctggact tggcaagaaa gttttggaat cttcagctgt gattctacat tctatagaat
      361 gcccatttaa tttaatactt tcttgagatg gtaaagcata accttctgct actttaatca
      421 tttgttctat gatatcaatc ccacttacca tttcacttac acagtgttca acttgcaaac
      481 gcgtattcat ttctataaaa taaaaatcca aatttttatc taccaaaaac tcaaaagttc
      541 ccgcaccttc atagcctata gctttagccg ctttaacagc agtttcatga agtctagtgc
      601 gtgttttttc atcaagcaaa atcgcagggg attcttctat aagtttttga tggcgtcttt
      661 gcatagaaca atctctttcg cccacatgaa tcacattgcc aaaactatct cctataacct
      721 gcacttctat atggcgtgga ttttgtatgt atttttccat atacatagtt ccatcgccaa
      781 atgctgtcat agcctcgctt tcagccgacc aatacgcttt ttcaagatct ttttcatttt
      841 caaccacacg cataccacga ccaccaccac ctgcagctgc ttttaaaatc acaggataac
      901 ctatttcttt ggcaagtttt ttagctgctt cagctcctgc caaagcccca tcgcttcctg
      961 ggatcacagg tacgcctgct ctttgcatga cttgttttgc ttttgattta tcactcatta
     1021 aattcatagc ttccacagaa ggacctataa atttgatgtt atgtttagca caaatttcaa
     1081 caaaattttg attttcactt aaaaatccgt atcctggaaa aatcgcatct gcttcagcaa
     1141 tttcagctgc tgtaataata gctgggatat ttaaatagct ttcagaactt cttgctttgc
     1201 ctatacaaat gcttgcatca gcgtatttta aatacaaagc atctttatct gcttcagaat
     1261 acacacaaat tgctttttta cccatttctt taatcgttct taaagcacgc agtgctattt
     1321 ctccacgatt agcaattaat atgcttttaa tttccatttt ataatttctc caccgcaaat
     1381 aaaggcattc caaattctac aggctgacca tcagcaacta aaatttcagc gattctacaa
     1441 tcaaattccg cttcaatttc attcatgatt ttcatcgctt cgataatagc tatagtatcg
     1501 ccttttttaa ccgtactacc tacttttaca aaaggtgctg cacctggact tggagcttga
     1561 tagaaagttc ctaccatagg gctgtttata cttggtttgt ttgattttac actttgacta
     1621 ggttgagctt cgtttacaac gcttacattg ataggttgtg gagctggaac tggaggacaa
     1681 acaggagctg gaacgtcaca acacatatct ctttcaagtt ctatttcaaa accatcttgt
     1741 tctttgatct taattttact aatatttgct tcagcaaaaa ggtttactaa ctctttaatt
     1801 tcttcttttg tcataaaatt ctcctaaaat ttaagaactt aatcttgtat tatataaaaa
     1861 aacttaaaat ttaactttaa aaaagaaaaa aatcataaaa aatatagatt ttttaggtta
     1921 taatccttac aaaaaattac aaatattaaa aggttaaaaa tgggtttaaa agcagataat
     1981 tggataagaa aaatggcatt agaacacaag atgatcgaac cattttgcga agcaaatata
     2041 ggaaaaggtg tggtaagcta tggactttca agctatggtt atgatatacg tgtagggcgt
     2101 gagtttaaaa tttttaccaa tgttaattca actgtagtgg atccaaaaaa tttcgtagaa
     2161 gaaaatgtag tagattttga aggcgatgta tgtatagttc ctgcaaattc ttttgcccta
     2221 gctagaacta tagagtattt taaaatgcct gatgatgttt tagctatttg ccttggcaaa
     2281 agcacttatg caagatgtgg catcatcgtc aatgttactc cttttgaacc aggttttgaa
     2341 ggacatatca ctatagaaat ttcaaatact acgcctttac ctgcaaaaat ttatgctaat
     2401 gaaggcatag cacaagtgtt gtttttacaa ggcgatgaaa aatgcgacac cacttacaaa
     2461 gataaaaaag gcaagtatca agctcaaacg ggcataacct tgccaagaat tttaaaatag
     2521 gaacacttat tgctttaatt ttaaaaaaac ttaagcaaag gaaggcaaaa tgtttaacaa
     2581 aaaaaatatc ttaatcacag gcggaacagg ctcttttgga aaaacctata ctaaggtttt
     2641 gctagaaaat tataaaccta ataaaatcat catttattct cgtgatgagc ttaaacaatt
     2701 tgaaatggca agcgttttta acgctccttg catgcgttat ttcataggag atgtaagaga
     2761 caaagagcgt ttaagcactg ctatgcgtga tgtggatttt gttatacatg ctgctgcgat
     2821 gaagcatgtg cctattgctg aatataaccc tatggaatgt ataaaaacaa acatccacgg
     2881 cgcgcaaaat gtcatcgatg cttgttttga aaatggggtt aaaaaatgta tcgctcttag
     2941 tacggataag gcttgcaatc ctgtaaattt atacggtgca accaaacttg caagcgataa
     3001 gctttttgtc gctgcaaaca acatagcagg taacaagcaa acacgctttg gtgttacaag
     3061 atatggcaat gttgtaggtt caagaggttc agtggtgcct ttctttaaaa aactcatcag
     3121 cgaaggagct aaagaacttc ctatcaccga tacgagaatg actcgttttt ggatcagcct
     3181 tgaagatgga gtaaaatttg tactgagtaa ttttgaaaga atgcatggag gagaaatctt
     3241 tatccctaaa attccttcga tgaaaatcac cgatctagcc catgctctag ctcctaattt
     3301 aagccataaa atcataggca taagagcagg agaaaaacta catgaaatca tgatttcaag
     3361 cgatgatagt catttaacct atgaatttga aaactactat gctataagcc cgagtattaa
     3421 atttgtagat aaagataatg actttagtat caatgccata ggcgaaaaag gacaaaaagt
     3481 aaaagatggt ttttcttata gttcggataa taatccttta tgggcaagcg aaaaagaact
     3541 tttagaaatc atcaatcaca ccgaaagttt ttaaaatgct tacttattct catcaaaaca
     3601 tcgatcaaag cgatatagat acgcttaaaa aagctctaaa agatgaaatt ttaacagggg
     3661 gtaaaaaagt aaatgaattt gaagaagccc tttgtgaata tgtgggtgta aaacacgctt
     3721 gtgtattaaa ctcagccact tcagcccttc atcttgccta cacagcacta ggcgtcaaag
     3781 aaaaaatcgt tttaaccacc cctttaacct tcgctgctac agctaatgca gccttaatgg
     3841 ccaaagctaa aatagagttt atcgacatta aaaacgatgg caatatcgat gaaaaaaaac
     3901 tagaagcaag acttttaaaa gatagcaaaa atataggagc tattagcgtg gtagattttg
     3961 cgggcaatag cgttgaaatg gatgaaattt caaaccttgc taaaaaatac aatattcctt
     4021 taatcgatga tgcaagccat gctttaggtg ctttgtataa aagtgaaaaa gtaggaaaaa
     4081 aagccgatct ttctatcttt tcttttcacc ctgttaagcc tatcactact tttgaaggtg
     4141 gagctgtggt aagcgataat gaagagctta tcgctaaaat caaactttta agaagtcatg
     4201 gcatcgttaa aaaaaggctt tgggatagcg atatggtaga acttggctat aattaccgct
     4261 taagcgatgt tgcttgtgct ttagggataa accagcttaa aaaactcgat cacaatcttg
     4321 aaaaaagaga agaaatcgca agtttttacg ataaagaatt tgaaaaaaat ccttattttt
     4381 ccacgataaa aatcaaagac tataaaaaaa gctcgagaca tttatatcct attttgcttt
     4441 ttcctgagtt ttattgtcaa aaagaagaac tttttgaaag cttacttcat gcaggaattg
     4501 gcgtacaggt acattataaa ccaacttatg agtttagttt ttataaaaaa ctcttaggag
     4561 aaataaaact tcaaaatgcg gataattttt acaaagccga gcttagcata ccttgtcatc
     4621 aagaaatgaa tctaaaagat gcaaaatttg taaaagatac tttatttagc attcttgaaa
     4681 aagttaaaaa gggatattgt gaataagcta gactttagaa gccaagattt tagccaaact
     4741 ggaaaggcta tgtatgaact agcttgcgaa ctttttccta tccctagaag catcacaggg
     4801 caaggtttta gagatagctt agaaatt
//
LOCUS       DARGBD010000113         4802 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.113, whole genome shotgun sequence.
ACCESSION   DARGBD010000113 DARGBD010000000
VERSION     DARGBD010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4802
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.113"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            186..701
                     /locus_tag="SFZ04_001621"
     CDS             186..701
                     /locus_tag="SFZ04_001621"
                     /inference="COORDINATES: protein motif:HMM:NF016846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HEG8065857.1"
                     /translation="MFNKVPQVIEQANCFIDGYGYAGVARDITLPIIEQEVLESKGAL
                     SANYGTGVFKAMECSFKISEMGEQAFEAFGVNTFSKTKIPLVFKASIHQSGSGKQVPF
                     VVELNGEFTSMTPPSIVAGGEFTSEIKINVHFIKITMDGKRLFLADIKNLILEFNGID
                     KMAKVKANLSL"
     gene            712..948
                     /locus_tag="SFZ04_001622"
     CDS             712..948
                     /locus_tag="SFZ04_001622"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HEG8065858.1"
                     /translation="MSKIIKLSNGNEVKFNPPTAGMLRRSMDMQKGEGSRAFYMIGEC
                     TNMSLEELDNLSLEDITLLSNELNNYQTPSGSTE"
     gene            complement(1056..1286)
                     /locus_tag="SFZ04_001623"
     CDS             complement(1056..1286)
                     /locus_tag="SFZ04_001623"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065859.1"
                     /translation="MKKIDNAFNAKIIFLKNFKIVFKAFLTLGIFVAFMLSFLSDDYL
                     AGFVNITSFFVLFSLILYIATFIYCFFKLKHS"
     gene            1316..3280
                     /locus_tag="SFZ04_001624"
     CDS             1316..3280
                     /locus_tag="SFZ04_001624"
                     /inference="COORDINATES: protein motif:HMM:TIGR01760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEG8065860.1"
                     /translation="MQDLGLSFGISLAFKGFKEFAKNTEALKKFSANLDQSNKSVKAL
                     NKSIDALEKSKAKIKAIGEEFSALKGELMAKGASALAIGVPVKISANLEDDMNNINAF
                     LNTNNESLNLLRKNFLKLSSNIGMNVNELTKLGEAGARLGIKSESELLKFSELGAKYS
                     KVFKLNNEESINFMSKLSNIYKLNTKDMQNLGDKIIGVAKASNVSASSVAKIMNEVGG
                     DAKLIGMSAEGAAALSAAFASATKDEGEAIGTFKAMTSVMSNLNNASDDMKTKFLSLG
                     LSTEQLSAYFKQDASGAVKVLLNQIKTLPKDEMTDFLNSVFGTGAAGMMQNLVDNTDK
                     YEQALKSLKNTKMGALNNEFKKLGDSTNTSFAKLSASMANLSASIGEALAPALSFVMD
                     SISSLINFIREIIDAFPNLSKVIGTLVVSLTIASVALSALKVGFLVAKIAGAQFAFTL
                     NAIRTAFNILKIAFLTNPIGLVLMSIAAIATLVIMNWDKVKTFFIGFIDKISSVFSGF
                     GEFFSSLWGGLFNWFASKFEWLSKAFAKIKDIAKSVASFFGFSDNDKKVDGEKYQNLQ
                     NDNSRTHHGIVRSGAPKHEARQAEIAALSKRSDISKKNEINVNINGTFNISSNNGVFD
                     LKAFAKEVENSVLSALNKNADKKVQTTIWG"
     gene            3282..3656
                     /locus_tag="SFZ04_001625"
     CDS             3282..3656
                     /locus_tag="SFZ04_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEG8065861.1"
                     /translation="MIFCLGEFEFEALNVDELEKNYEYGIRSIERINNHNALISVAKA
                     NESIKISGKTLPLSKDKNTYLDTLKQMASQNKSYAMCSASGVYFGKFAILSISEKQSA
                     FLEGSGFLTQSFELNLQRDFDE"
     gene            3649..3840
                     /locus_tag="SFZ04_001626"
     CDS             3649..3840
                     /locus_tag="SFZ04_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HEG8065862.1"
                     /translation="MSEIYIAKNNERLDSVVYRHYGTLLYFDQVLLANPKLEPLLKTG
                     DKVILPNIEIQENKEETLW"
     gene            3834..4802
                     /locus_tag="SFZ04_001627"
     CDS             3834..4802
                     /locus_tag="SFZ04_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEG8065863.1"
                     /translation="MVNHPSFKIKANDKDITQKISLNLINLSFDDKAKDESDEISISL
                     NGLYARAPFGDKLELWLGFDEKLFKCGTFSINSFSKNYSSKTTDIKATAINFASNIKN
                     KKSRTWENTNLADIALKIAGENNLKAKTNNANKAYIKHELQNNVSDIEFIYTLCAKYG
                     FLACIKEQTLIIIEQKEAAQEGVKGGGKQEGGIKYTLDISELSDLNISIKNRNDYTGV
                     KLTYQDIEQGIVKSVLSGNDKGCVYELKVAGVKNDSEALNLANAKLNALNKGSFEGSF
                     SMIGKNIKAGANLEIKGIDEKVIFSIKDVKHDFSLSGYTISVNFEG"
BASE COUNT         1812 a          566 c          943 g         1481 t
ORIGIN      
        1 tgggcgagtg atttgattaa aactattagt gcagagtaaa aggtggcttt tggggctttc
       61 tcacagagag tgcaaagcac aagcttaaag agagtgtaaa gcacaagaga ggggtcaagg
      121 ggatgaaatc ccttgttgca aggtggaatt tacttccacc gcgaagttaa aagaaggaga
      181 ataacatgtt taataaagta cctcaagtaa ttgaacaagc aaattgtttt atagatgggt
      241 atggttatgc tggggtagca agagatatta ctttgcctat tatagaacaa gaagtattag
      301 aaagcaaagg agcgctgagt gcaaattatg gcacgggtgt atttaaagca atggaatgct
      361 cttttaaaat tagtgagatg ggagaacaag cttttgaagc ttttggagta aatacttttt
      421 ctaaaacaaa aatcccactt gtttttaaag caagtattca tcaaagcgga tcaggaaaac
      481 aagtgccttt tgtagtggag ttaaatggag aatttacatc tatgactccc ccttctattg
      541 tagcaggtgg cgaatttaca agtgaaataa aaatcaatgt gcattttata aaaatcacaa
      601 tggatggcaa aagactattt ttagctgata taaaaaatct tattctagaa tttaatggca
      661 ttgataaaat ggcaaaagta aaagcaaatt taagtctata aggagaaaat tatgtcaaaa
      721 ataatcaaat tatcaaatgg aaatgaagtt aaatttaatc ccccaacagc tgggatgttg
      781 cgtcgttcta tggatatgca aaaaggcgaa ggttcgagag ctttttatat gataggagaa
      841 tgtactaata tgagtttaga agagcttgat aatttaagtc ttgaagacat tactctttta
      901 agcaatgaat taaacaatta ccaaactccc agtgggagca ctgaataatg aagctattgc
      961 gttaatagct cattatttgc atttttctta tagtgaaatt atgagtttaa acataaaaga
     1021 ttatcttgaa tttttagata tcagtttaaa aatcgctaag agtgtttaag cttaaaaaaa
     1081 caatagataa aggttgcaat ataaagtatt aaagaaaaaa gcacaaaaaa tgaagtgata
     1141 ttaacaaaac ctgctaaata atcatcgctt aaaaaagaaa gcataaaagc gacaaaaata
     1201 ccgagtgtta aaaaggcttt aaaaacgatt ttaaagtttt ttaaaaagat gattttagca
     1261 ttaaaagcat tgtctatttt tttcataaat agattttaca ataaaaagga aaaatatgca
     1321 agatttagga cttagctttg gtatatcttt agcctttaaa ggctttaaag aatttgctaa
     1381 aaacactgaa gctttaaaaa agtttagtgc taatttggat caaagcaata aaagtgtaaa
     1441 agccttaaat aaaagtattg atgcattaga aaaatccaag gcaaagatta aagcaatagg
     1501 tgaagagttt agtgctttaa aaggtgagct tatggctaaa ggtgcaagtg ctttagctat
     1561 cggtgtgcct gtaaaaatca gtgctaatct tgaagatgat atgaataata taaacgcctt
     1621 tttaaataca aataatgaaa gtttaaatct tttacgaaaa aactttttaa aactaagttc
     1681 taatatagga atgaatgtta atgagcttac taaattgggt gaagcaggag caaggcttgg
     1741 gataaaaagc gaaagtgagc ttttaaaatt tagcgaactt ggtgctaagt atagcaaagt
     1801 ctttaaatta aataatgaag aaagtattaa tttcatgagt aagctttcta atatttataa
     1861 attaaatacc aaagatatgc aaaatcttgg agataagata attggtgtag ctaaagcaag
     1921 caatgtaagt gcttcaagtg ttgctaagat aatgaatgaa gtaggaggcg atgcaaagct
     1981 tatcggtatg agtgcagagg gtgcggcagc tttaagtgct gcttttgcaa gtgcgactaa
     2041 agatgaaggc gaagcgattg gaacttttaa agcaatgact agcgttatga gtaatttaaa
     2101 taatgcaagt gatgatatga aaaccaagtt tttaagcttg gggcttagta cagaacaact
     2161 aagtgcttat tttaaacaag atgcaagtgg tgcggttaaa gtacttttaa atcagataaa
     2221 aaccttacca aaagatgaga tgactgattt tttaaattca gtttttggga cgggtgctgc
     2281 aggcatgatg caaaatttag tcgacaatac agataagtat gaacaagctt taaaatcttt
     2341 aaaaaataca aaaatgggtg ctttaaataa tgaatttaaa aagttaggag actccactaa
     2401 cacaagcttt gcaaaactta gtgccagtat ggcaaatctt agtgcaagca taggcgaagc
     2461 tttagcacct gctttaagct ttgtcatgga tagtatctca tctttgatta actttattag
     2521 agagattatt gatgcttttc caaatttaag taaagttata ggtaccttag tagtttcttt
     2581 aactatagct agtgttgccc ttagtgcttt aaaggtagga tttttggttg caaaaattgc
     2641 aggagcgcaa tttgctttta cgcttaatgc tataagaact gcttttaata tattaaaaat
     2701 cgctttttta accaacccta tagggcttgt tttaatgtca attgccgcca ttgcaacgct
     2761 tgttatcatg aactgggata aagttaaaac ctttttcatt ggatttatag ataaaattag
     2821 ttccgttttt agcggatttg gcgagttttt tagctcttta tggggtggtt tatttaattg
     2881 gtttgcttct aagtttgaat ggttaagcaa agcatttgca aagattaaag atatagctaa
     2941 aagcgtggcc tctttttttg gttttagcga taatgataaa aaagttgatg gagaaaaata
     3001 tcaaaattta caaaatgata attctagaac ccatcatggt atagtaagat caggtgctcc
     3061 aaagcatgaa gcaagacaag ctgaaattgc cgctttatcc aaaagaagtg atatttctaa
     3121 aaaaaatgaa atcaatgtaa atattaatgg aacttttaat ataagttcaa ataatggagt
     3181 gtttgattta aaagctttcg caaaagaagt tgaaaatagt gttttaagtg cattaaataa
     3241 aaatgcagat aagaaagtgc agacaacaat ttggggttaa aatgatattt tgtttaggtg
     3301 agtttgagtt tgaagcttta aatgtagatg agcttgaaaa aaattatgaa tacggcatta
     3361 gaagcattga acgtattaat aatcataatg ctttaatcag cgttgctaaa gcaaatgaaa
     3421 gtattaaaat aagtggtaaa actttaccgc ttagtaaaga taaaaacact tatttagata
     3481 ctttaaagca aatggcttct caaaataaaa gctatgcaat gtgtagtgcc agtggagttt
     3541 attttggaaa atttgcgatt ttaagtatca gcgaaaaaca aagtgctttt ttagaaggca
     3601 gtggcttttt aacacaaagt tttgaactta atttacaaag ggattttgat gagtgagatt
     3661 tacattgcaa aaaacaatga aaggcttgat agtgtggttt ataggcatta tggaacgctt
     3721 ttgtattttg atcaagtttt attagccaat ccaaaattag agcctctttt aaaaacagga
     3781 gataaagtga ttttacctaa tattgaaatt caagaaaaca aggaagaaac tttatggtaa
     3841 atcatcctag ctttaagata aaagcaaatg ataaagatat tacacaaaag ataagtctta
     3901 atcttattaa tctaagcttt gatgataagg ccaaggatga aagtgatgag ataagcatca
     3961 gtttaaatgg actttatgca agagctcctt ttggcgataa gttagaactt tggcttggat
     4021 ttgatgaaaa actttttaaa tgtggtactt ttagcattaa tagttttagt aaaaattata
     4081 gctctaaaac aacagatatt aaagctactg cgattaattt tgctagcaat attaaaaaca
     4141 aaaaatcaag gacttgggaa aatactaatc ttgcagatat tgctttaaaa attgctgggg
     4201 aaaataattt aaaagcaaaa acaaataatg caaacaaagc ttatatcaaa catgaacttc
     4261 aaaacaatgt aagcgatatt gagtttattt atactctttg tgcaaaatat ggctttttag
     4321 cttgcataaa agaacaaact cttatcatca tagagcaaaa agaggcagca caagagggtg
     4381 taaagggtgg cggcaagcaa gagggtggca tcaaatatac tttagatata agtgagctta
     4441 gtgatttaaa tatcagtatt aaaaatcgca atgattatac aggcgttaaa ctaacttacc
     4501 aagatataga acaaggcatt gttaaaagcg ttttaagtgg caatgataag ggttgtgttt
     4561 atgagctaaa ggttgctgga gtaaagaatg atagtgaggc actaaacttg gcaaatgcta
     4621 agcttaatgc tttaaataaa ggctcttttg aaggaagctt tagcatgata gggaaaaata
     4681 tcaaagcagg ggcaaattta gaaataaaag gcattgatga aaaggttatt tttagtatta
     4741 aagatgtaaa acatgacttt tctttgagtg gctatactat aagcgtgaat tttgaagggt
     4801 aa
//
LOCUS       DARGBD010000114         4677 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.114, whole genome shotgun sequence.
ACCESSION   DARGBD010000114 DARGBD010000000
VERSION     DARGBD010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4677
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.114"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            161..1192
                     /gene="pseI"
                     /locus_tag="SFZ04_001628"
     CDS             161..1192
                     /gene="pseI"
                     /locus_tag="SFZ04_001628"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HEG8065864.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALKSIKAAKKAGADAI
                     KIQTYTPDSLTLNSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDVEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKNIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLGKKATKDIEFG
                     DALKQGDFT"
     gene            1189..2160
                     /gene="legB"
                     /locus_tag="SFZ04_001629"
     CDS             1189..2160
                     /gene="legB"
                     /locus_tag="SFZ04_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HEG8065865.1"
                     /translation="MKNILVTGADGFIGSHLCESLIKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVVSGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLNLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            2153..3307
                     /gene="legC"
                     /locus_tag="SFZ04_001630"
     CDS             2153..3307
                     /gene="legC"
                     /locus_tag="SFZ04_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HEG8065866.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKPIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDRIAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFIDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQNCQSNELINTKKLEKRLINLPSSVRIANKKE"
     gene            3416..3958
                     /locus_tag="SFZ04_001631"
     CDS             3416..3958
                     /locus_tag="SFZ04_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HEG8065867.1"
                     /translation="MKNVIIIGAGGFTRELYSYLKDANYEIIGYIDIQENNFFDLKYL
                     GNEDNFDKKLIQKASFALGVGQINLRKKILVKLSKKSCNFITFIHPQSFVSKEAKIGQ
                     GVIVCPFVTINANSNIGDFVLCNIYSSIAHDCKVGEGSILSPYATLNGNSSIGKNCFL
                     ATRVSLLPCVNLEDNCIVSR"
     gene            4031..4351
                     /locus_tag="SFZ04_001632"
     CDS             4031..4351
                     /locus_tag="SFZ04_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HEG8065868.1"
                     /translation="MKEINIIDFGLMGKQISALFYLLGYEIGVYNKSKLNIYEFEKQI
                     KLLQRKIDFSNFNAGKINIYQHIEDLKNSLTIESLNEDLNLKKEIMQILRDNNIVFSR
                     VWMI"
     gene            4339..4590
                     /locus_tag="SFZ04_001633"
     CDS             4339..4590
                     /locus_tag="SFZ04_001633"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065869.1"
                     /translation="MDDLNCDFIHFFNTIYIKLIELCGSNLERFTPLKDLKKLGFHII
                     CSKGNRGALANLLLFNEISSFFKIIEKYDYNFKECYKDM"
BASE COUNT         1787 a          664 c          780 g         1446 t
ORIGIN      
        1 tgaattctat aatttaaatc catatggcat tttttgaatg aaaccaagca aaatcataac
       61 aaagttgtaa tatttatata atataaatat ataaattgaa gaaatatata atataattat
      121 atatcatttt agtcaggaaa tttaccaaag aaagaaaagt atgcaaatag gaaattttaa
      181 caccgataaa aaggttttta tcatagcaga acttagtgca aatcacgcag gaagtcttga
      241 aatggcactt aaaagcataa aagcagccaa aaaagcaggt gctgatgcga taaaaatcca
      301 aacttacact ccagatagcc tcacactaaa tagcgataaa gaagatttta ttattaaggg
      361 tgggctttgg gataaaagaa aactttatga gctttatgaa agtgcaaaaa ccccttatga
      421 atggcattct caaatctttg aaaccgcaca aaatgaaggc atactttgtt tttcaagtcc
      481 ctttgctaaa gaagatgtag aatttcttaa acgctttgat cctatagcct ataaaatcgc
      541 ttcttttgaa gccaatgatg aaaatttcgt gcgtttaatc gccaaagaaa aaaaacctac
      601 tatcgtttca acgggcattg ctacagaaga agaacttttt aaaatctgtg aaatttttaa
      661 agaagaaaaa aatcctgatt taatcttttt aaaatgcact tcggcttatc ctactgccat
      721 agaagatatg aatttaaaag gcatagtaag tttaaaagaa aaatttaatg ttgaagtggg
      781 actaagtgat catagctttg gttttttagc ccctgttatg gcagtagcac ttggagctag
      841 agtgatagaa aagcatttta tgttagacaa aaacatagaa agcgaagaca gtaaatttag
      901 tcttgatttt gatgaattta aagctatggt agatgcagta agacaggctg aaagtgcttt
      961 aggtgatggt aagttagact tagatgaaaa agctcttaaa aaccgtgttt ttgcaagaag
     1021 cttatatgca agcaaggata tcaaaaaagg tgaaatgttc agtgaagaaa atgtaaaatc
     1081 agtacgtcct tcttttggac tacatcctaa attttatcaa gaacttttgg gaaaaaaagc
     1141 cactaaagat atagaatttg gcgatgcttt aaaacaagga gattttacat gaaaaatatt
     1201 ttagttacag gtgctgatgg ttttataggc tctcatcttt gtgaaagttt gatcaaaaaa
     1261 ggttttaaag tcagagcttt aagccagtat aattctttta atttttgggg acatttagaa
     1321 aaaagtcctt ttttaaaaga catggaagtt gtaagtgggg atttaagaga tagttttttt
     1381 tgcgaaaaaa tcaccaaaaa tatagatgcg atctttcatc ttggcgcctt aatcgccatc
     1441 ccctactcct acacagcccc acaaagctat gtggatacca atgtcaatgg cactttaaat
     1501 atgctcgaag cagctaaaaa aaacgaaatt tcgcatttta tccacacctc aacaagcgaa
     1561 gtttatggca cggcctttta tgtgcccatc gatgaaaaac accctttaca acctcaaagc
     1621 ccttattctg caagcaaaat cgctgcagat atgatggcgc tgagttatta taattctttt
     1681 aatttaaatg tcaatattgc acgccctttt aacacctatg gaccaagaca aagcgcaagg
     1741 gctatcatac ctaccatcat cacacaaatt ttaagcggag caaaggaaat caaactagga
     1801 gatttaagcc ctaaaaggga tttaaatttt gtgctagata cttgcgaggg ttttatctct
     1861 cttttaaatt taaaacattt tggagaagtt tataatatag gctcaggagt ggaatactcc
     1921 atgcaagaag tacttaatct catacaaaaa attttagatt ctaaggtaaa aatcatccaa
     1981 gatgagcaaa gattgcgtcc taaaaatagc gaagttttta gactttgttg cgatgcaaac
     2041 aagcttaaaa aagctacaaa ttggcaaagc aaaataagtc tagaagaagg tttaagacaa
     2101 agcatagagt attttaaaga aaatttagaa aattataaaa gtgagcttta taatgtttga
     2161 aaaagaaatt tcttttataa aaagtctttt taataaagaa aatatcgccc tacatgagcc
     2221 ttgctttata ggcaatgaga aaaaatatct cttagaatgt atcgatagcg gttttgtttc
     2281 aagcgtagga gaatttgtaa cgcgttttga agaagcttta aaagaaaaaa ccaaagcacg
     2341 ctttgtcatc gctacaaata caggtacagc agcccttcat atcgctttat tagctaatgg
     2401 tatcgatgaa aactgcgaag tcatcactca aagcataagc tttgtcgcta cggccaatgc
     2461 tatcgcttat acaggtgcaa aacccgtttt tttagatata gatgaaaaca ctctaagttt
     2521 aagtcctaag gctttagagc attttttaga aaatcaaact tatcaaaaag ataatcttag
     2581 ctataacaaa accacacaca aacccatcaa agcttgtgtt attatgcaca cctttggttt
     2641 aagcgctcat ataaaagcca tcaaagagct ttgtgaaaaa taccacatcc ttttaattga
     2701 agatgctgca gaagccttag gaagcaccta tgaaaacaag gccttaggca cttttggaaa
     2761 gtgtggaatt ttaagcttta atggtaataa aatcatcaca ggtggatgcg gtggggcgat
     2821 attaagcgat gatgaaaatt tagccaaact tgcaagacac cttagcacca cagctaaaat
     2881 cccccatcct tacgaatacg atcatgatag gatagcttat aattaccgtc tttgcaatat
     2941 aaacgcagca atcttgcttg caggacttga aaatttagaa ctttttttag aaaacaaaag
     3001 agaacttgct aaaatttaca aggatttttt taaaaatcac gataaatgta aatttatcga
     3061 tgaaaaaagc aatgaaaaaa gcaatttttg gctcaatacc ttgcttttta aagatgaaaa
     3121 tttaagaaat atctttttag aagaatgctt gaaaaataat attttcgtcc gtcctgtatg
     3181 gaaaagctta ccgagtttaa aagcttttca aaactgtcaa agcaatgagc ttataaacac
     3241 taaaaaatta gaaaaacgct tgattaattt acctagtagc gttagaatag caaataaaaa
     3301 ggaatgatgc gttgcaaaat ttaattcaaa gcattaaaaa aatttaataa gaaaaaatat
     3361 gagaatagcg ggggggggga tttgattttt ttacttcttc ttttaggaga agtgcgtgaa
     3421 aaatgtcatc atcataggag cgggtggctt tactagagag ctttattctt atttaaaaga
     3481 tgcaaattac gaaattatag gctatattga tatacaagaa aataattttt ttgacttaaa
     3541 atatctaggc aatgaagata atttcgataa aaagttgatt caaaaagcat cttttgcttt
     3601 aggtgtagga caaatcaatt taagaaaaaa aatccttgta aaactttcaa aaaaatcatg
     3661 taattttatc acttttatac atcctcaatc ttttgtttca aaagaagcta aaataggaca
     3721 aggggttata gtgtgtcctt ttgtaaccat taatgctaat tcaaatatag gagattttgt
     3781 gctttgtaat atttattcaa gcatagctca tgattgtaaa gtaggagaag gaagtatttt
     3841 aagcccttat gctacactta atggaaattc aagcatagga aaaaattgtt ttttagctac
     3901 tagagttagc ctgttgcctt gcgtaaactt agaagataac tgcatagtaa gcaggtagta
     3961 ttattagcaa aaactacaca tccaatcaac ttatttttca taaaaatata attaaaacaa
     4021 ggaaaaaaca atgaaagaaa ttaatatcat agactttggt ttaatgggta agcaaataag
     4081 tgctttattt tatttattag gctatgaaat aggtgtttat aataaaagca agctcaatat
     4141 atacgaattt gaaaaacaaa taaaacttct acaaagaaaa atagattttt ctaattttaa
     4201 cgccggaaaa ataaacattt accaacatat agaagatctt aaaaatagct tgactataga
     4261 aagcttaaat gaagatttaa atttaaaaaa agaaatcatg caaattctta gagataataa
     4321 tatagttttt tcgagagtat ggatgattta aactgcgatt ttatacattt tttcaatact
     4381 atttatatca aattaataga actttgtggt tctaatttag aacgatttac cccattgaaa
     4441 gatcttaaaa aattaggatt tcatatcatt tgcagtaaag gcaatcgagg agctttagca
     4501 aatttacttt tgttcaatga aatttcatca ttttttaaaa ttatagaaaa atacgattat
     4561 aatttcaaag aatgttataa agatatgtaa aaaagtaaag tgagagaaat tttaatcaaa
     4621 gtattatttt atagtatttt gatgagattt ttttagaaat caaagtgagc ttttatc
//
LOCUS       DARGBD010000115         4656 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.115, whole genome shotgun sequence.
ACCESSION   DARGBD010000115 DARGBD010000000
VERSION     DARGBD010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4656
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.115"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..368
                     /locus_tag="SFZ04_001634"
     CDS             <1..368
                     /locus_tag="SFZ04_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HEG8065870.1"
                     /translation="ESKENLEKEQDSNAKKWAPLKQSTLNSRKAQKIMHTKKLFATGS
                     MQSSLHSGVENDRAFVALNATYKGFAYASVHQFGSKNVIARPFLPIDENLNINKRVAR
                     AMEEETKDMLWTLFKQTLK"
     gene            complement(507..1640)
                     /locus_tag="SFZ04_001635"
     CDS             complement(507..1640)
                     /locus_tag="SFZ04_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065871.1"
                     /translation="MSNIFNKSVDEAYSYLENKGLKISFKYHEIKKQAHDRAFSAAGI
                     MKTDVLNDLHEELKKAMKEGRNFNEFKNNLKELLTSKGWYGKKEITNPKTGEKRTINI
                     NANRLKTIYHTNMQSAYAKARAKQLSTYSYKTYWVYKCALLEDSRSEHKKMHNCAIHR
                     DDPFWKTSFPPNDYNCKCKVIAVSEKEARAKYKILENPKSIASKNFAYDKRENSQIPK
                     ETRISLDESLENLPKIQNYENLSDKELIDKVYEAFNVKKGDLLVDKIGDVISLDDDFF
                     YDKKKQTTKIKKQNRHFYLDYFPKLINDPDEIRLSMDADPRFKGFTKKTYIKYFYDNG
                     VKALVMVLNQKGNQINNKTMFLSEDNSYFKEILNQGKTIYKKQ"
     gene            complement(1633..3015)
                     /locus_tag="SFZ04_001636"
     CDS             complement(1633..3015)
                     /locus_tag="SFZ04_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HEG8065872.1"
                     /translation="MRILNKTARKSVASSVDFDSIIAALNSENFSELISIYDYFKRFD
                     PQIASEVMKRRFKMCSFPMFITCKDETQRIFLQNYISKSDFRKFVFEMSAAVVYGFAA
                     FLLEWKVKDLNVFPKLKYISPRFFSMDDKERLFIYNESKKLFVDECDDIFLHLHPSDS
                     GSFIEQSLFYNVVSIAVLKQLAMSKNISYLDNLSVPPIIAKTTNANSDKEIEELLMQL
                     SNLRSASVGIFNKDDMVELLNSGLSTSTFTDFLRYCDEAISKLISGQVLAGNAVQNGT
                     QALGNVHEEVRLNVGEMDTLFLSKSIQKLLEQILKLNFAKPAEFEFVFDTNKEVDEQY
                     LAGVYSTISSMGYEIPAEFLAKTFRIEGLKKKEVSTENYAFNSLMLEKNNRLSKDKIE
                     LNSSAEDEISDEIYEKIKAFWEECQSYEELEERIFKEYPNISFEKLKESLDKKIALAS
                     MQALLDTGNE"
     gene            complement(3012..4538)
                     /gene="terL"
                     /locus_tag="SFZ04_001637"
     CDS             complement(3012..4538)
                     /gene="terL"
                     /locus_tag="SFZ04_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006802512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HEG8065873.1"
                     /translation="MDKLEINEIKSRLKALKFNHKEDKNLRRDRILKQGFKAFVFEYF
                     PHHINFIKKESSNFRNFIYDNIDELEKKNNHLCFKAYRGSAKTTLLVRLFTLYSLLSN
                     KKQYALIISSTLDIASESIASLKTELEENAKLINDFEIKLGDEWTSEAIVFTSFKIHK
                     KIKAFGSGKKIRGTNYLGKRPDLIICDDIENDENVESKTQRDKLYKWFNKAILKLVAR
                     TQENYLYLVVGTILHQDSLLNRLNDDKRFLIYDFPLVLSFPDKLDLIDKNNILKSDLK
                     GFKLDDENLNKIEILKEYFADTQSFFSEYQNKALSTENAIFSEYKIIEKEQDFDLVVL
                     GIDPALGKAKGDYFAIAELKKVDKNKFHLKASGYKISPSKMIDVILKLYIKYLSLGKI
                     VKIAIETIAFQEFFKDKLKEEALKLGIILSICELKNKVAKELRIDSLAPYINDGTILI
                     DNNSNLLIEEMLTYPKAAHDDLLDASEMAFRIACSAANADYKAINRILSKRKIKKGFL
                     "
BASE COUNT         1476 a          768 c          581 g         1831 t
ORIGIN      
        1 aagaaagcaa agaaaatcta gaaaaagaac aagactctaa tgctaaaaaa tgggcacctt
       61 taaagcaaag tacattaaat tcaagaaaag cacaaaagat catgcatact aaaaagcttt
      121 ttgcaacagg ctctatgcaa agctctttac atagtggagt ggaaaatgat agagcttttg
      181 tagcacttaa tgccacctat aaaggctttg cgtatgcaag tgtgcatcaa tttggctcta
      241 aaaatgtaat agcaagacct tttttaccca tcgatgaaaa tttaaatata aacaaaagag
      301 tagccagagc aatggaagaa gaaactaagg atatgctttg gactttgttt aagcagactt
      361 taaaataaga ttttttataa tgtctaaaag tcaatcatta tgccctttgg tcgctttaag
      421 cgatgtttgg atagactaga ttttatctaa accaaaaccc agatgcgacg cgggaacatc
      481 atgctcaggg cttagtcgct gattgattat tgttttttat aaattgtttt cccctgattt
      541 aaaatctctt taaaatagct attatcttca cttaaaaaca tggttttatt attgatttga
      601 ttgccttttt gatttagcac catcacaaga gcttttactc cattatcata aaaatactta
      661 atataagttt ttttagtaaa gcctttaaat ctagggtcag catccatact taatctaatc
      721 tcatcagggt cattaataag ctttggaaag tagtctaagt aaaaatgcct attttgtttt
      781 ttgattttag tagtctgctt ctttttatca taaaaaaaat catcatctaa gcttattaca
      841 tctcctattt tatcaacaag caaatctcct ttttttacat taaaagcttc ataaacctta
      901 tctattaatt ctttatcact taaattttca taattttgta tttttggtaa attttctaag
      961 ctctcatcta agcttattct agtttctttt gggatttgtg aattttctct tttatcataa
     1021 gcaaaatttt tagaagcaat gctttttgga ttttctaaaa ttttatattt agcccttgct
     1081 tctttttcgc ttactgctat gactttacat ttgcaattat aatcattagg cggaaaggat
     1141 gttttccaaa atggatcatc tctgtgtata gcacaattgt gcattttttt atgctcactt
     1201 cttgaatctt ctaaaagtgc acatttatat acccagtaag ttttgtaaga ataagtgcta
     1261 agctgttttg ctcttgcttt tgcgtaagca ctttgcatat tggtatgata aattgttttt
     1321 aagcgatttg cattgatgtt tatagtgcgt ttttctcctg tttttgggtt tgttatttct
     1381 tttttaccat accaaccttt acttgttaaa agctctttta aattgttttt aaactcatta
     1441 aaatttcttc cttctttcat agcttttttt aattcttcgt gcaaatcatt taatacatct
     1501 gttttcataa tgcctgctgc actaaaagca cgatcgtgtg cttgtttttt aatttcgtga
     1561 tatttaaagc ttatttttaa gcctttattt tctaaatagc tataagcttc atctacgctt
     1621 ttgttaaaaa tattactcat ttccagtatc caaaagagct tgcatggaag caagagcgat
     1681 ttttttatcc agactttctt ttaatttttc aaaactgata tttgggtatt ctttaaaaat
     1741 tctttcttct aattcttcat agctttgaca ttcttcccaa aaggctttga ttttttcata
     1801 aatttcatca cttatctcat cttctgcact tgagtttaat tctattttat ccttgctaag
     1861 acgattattt ttttctaaca ttaaagagtt aaatgcgtaa ttttcagtgc ttacttcttt
     1921 tttctttaaa ccttcaattc taaaagtttt tgctaaaaac tcagcaggta tctcataacc
     1981 catactagaa atagtgctat aaactcctgc taagtattgc tcatcgactt ctttgtttgt
     2041 atcaaaaaca aactcaaact cagctggctt tgcaaaatta agttttaaaa tctgctctaa
     2101 taatttttgt atgcttttgc ttaaaaaaag tgtatccatt tcacccacat taagacgcac
     2161 ttcttcgtgt acattaccta aggcttgagt accattttgc actgcatttc ctgctaaaac
     2221 ttgtccgctg attaattttg aaatagcttc atcacaatac cttaaaaaat ctgtaaaagt
     2281 agaagtagaa agccctgagt ttaaaagctc gaccatgtca tctttgttaa aaattcccac
     2341 acttgcactt cttaaattgc taagttgcat taaaagttct tctatttctt tatcgctgtt
     2401 tgcattggtt gtttttgcaa tgataggtgg cacacttaaa ttatcaagat aagaaatgtt
     2461 tttactcata gcaagttgct ttaaaactgc aatgcttaca acattataaa aaagggattg
     2521 ttctatgaat gaacctgaat cgcttggatg taagtgtaaa aatatatcat cacactcatc
     2581 cacaaaaagt tttttacttt cgttataaat aaatagcctt tctttatcat ccatcgaaaa
     2641 aaatctcgga cttatgtatt ttagttttgg aaaaacattt aaatctttta ccttccattc
     2701 aagtaaaaaa gcagcaaaac cataaactac tgcagcactc atttcaaaga cgaatttcct
     2761 aaaatcactt tttgatatat aattttgtaa aaatattctt tgagtctcat ctttacaagt
     2821 aataaacata ggaaaagaac acattttaaa acgccttttc attacttcag aggcaatttg
     2881 tggatcaaag cgtttaaaat aatcataaat acttataagt tcactaaaat tctcactatt
     2941 taaagcagcg attatgctat caaaatcaac actacttgct acgctttttc ttgctgtttt
     3001 atttaatatt ctcataaaaa tcctttttta atctttcttt tgctaagtat tctattgatt
     3061 gctttataat ctgcatttgc tgcactacaa gcgattctaa aagccatctc acttgcatca
     3121 agcaagtcat catgtgctgc ttttggatag gttagcattt cttcgataag taaatttgag
     3181 ttattgtcta ttaaaatcgt gccgtcgtta atgtaaggtg ctaagctatc gatgcgaagt
     3241 tcttttgcga ctttattttt aagctcacaa atacttagaa taattcccag ttttaaagcc
     3301 tcttctttga gcttatcttt gaaaaactct tgaaaggcta ttgtttcaat ggctattttt
     3361 actatttttc ctaagcttaa gtatttgata taaagcttta atatcacatc tatcatcttg
     3421 ctaggagata ttttatagcc acttgctttt aaatgaaatt tatttttatc tactttttta
     3481 agctcagcaa tggcaaaata atcgcctttt gccttaccaa gtgcagggtc aatccctaaa
     3541 accacaaggt caaaatcttg ttctttttct atgattttat actcgctaaa aatagcattt
     3601 tcagtactta atgctttgtt ttgatattcg ctaaaaaaac tttgagtatc agcaaaatat
     3661 tcttttaaaa tttctatttt gtttaaattt tcatcatcta atttaaaacc ctttaaatcg
     3721 ctttttaaaa tattgttttt atcgattaaa tcaagtttgt caggaaagct tagcacgagc
     3781 ggaaaatcat aaattaaaaa gcgtttatca tcatttaaac gatttaaaag actatcttga
     3841 tgtaaaatag ttccaacgac taagtataaa taattttctt gtgttcttgc gactaacttt
     3901 aaaatggctt tattaaacca tttataaagt ttatcccttt gcgttttact ttctacattt
     3961 tcatcatttt ctatatcatc acagataatt aaatcaggtc ttttgccaag ataattcgtt
     4021 cctcttatct ttttaccact accaaaagct ttaatttttt tatgtatttt aaaacttgta
     4081 aaaactatgg cttcactagt ccattcatcg cctagtttta tttcaaaatc attaattaat
     4141 ttagcatttt cttcaagctc tgtttttaaa cttgctatac tttcacttgc aatgtctaaa
     4201 gtagaagata taattaaagc atattgcttt ttattactta aaagcgagta aagagtaaaa
     4261 agtcttacta aaagcgttgt tttagcactt ccacgataag ctttaaaaca aagatgatta
     4321 tttttctttt ctaattcatc aatattatca tagataaaat ttctaaaatt agagctttct
     4381 tttttgataa aattgatatg atgaggaaaa tattcaaaaa caaaagcctt aaagccttgt
     4441 tttaaaatcc tatctcttct taaattttta tcttctttat gattaaattt taaagccttt
     4501 agccttgatt taatttcatt tatttctaac ttatccattt ttgctttctt tttattttca
     4561 aatatagttt taaaaagctt taaattgcgt ttaaaacctt ttaaaataca agggtcaata
     4621 taaagcctta caatttatct aattttttat ttataa
//
LOCUS       DARGBD010000116         4560 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.116, whole genome shotgun sequence.
ACCESSION   DARGBD010000116 DARGBD010000000
VERSION     DARGBD010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4560
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.116"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..420)
                     /locus_tag="SFZ04_001638"
     CDS             complement(<1..420)
                     /locus_tag="SFZ04_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8065874.1"
                     /translation="MIDNSGSAVPPLNYIIGRELEFESKDTNGDMYIQGNHFFVSCFL
                     KTHWTRKENSPYFFNNENYFIRTLLNKDHLILQSQKNKNIIYVSYHSKEDPLTPANFK
                     ELTMQILKILGYDVSLNLIDENKIDGKFIKNLDHGCGI"
     gene            complement(446..1069)
                     /locus_tag="SFZ04_001639"
     CDS             complement(446..1069)
                     /locus_tag="SFZ04_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8065875.1"
                     /translation="MLINQTFEINSCDDVELNIKRTSKLEYRISYDDEKEMKAIVFII
                     GGYGANANIHFLDSYRNYIAKKFDVATINVFYHCFCQRPSDVEKYSTLADFTKEDLRL
                     MEKVLCKYNIPCDQLANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATFIPSRGE
                     YQNFGIMAAIDHINALKDLVKRFPKFADLPKIYGGGVLWRILSLAYS"
     gene            1130..2638
                     /locus_tag="SFZ04_001640"
     CDS             1130..2638
                     /locus_tag="SFZ04_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEG8065876.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKERKEITYKDFDLFSKK
                     LASEILKTLKNDNPTQVPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFDIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNTLKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRVDNQIKYMGHRIELGEIESVINSHANIKNSACIFKEDI
                     ICFYESEEEINFKAFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            2678..2905
                     /locus_tag="SFZ04_001641"
     CDS             2678..2905
                     /locus_tag="SFZ04_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8065877.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLEIAMKD"
     gene            complement(2902..3972)
                     /locus_tag="SFZ04_001642"
     CDS             complement(2902..3972)
                     /locus_tag="SFZ04_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG8065878.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(3994..4557)
                     /locus_tag="SFZ04_001643"
     CDS             complement(3994..4557)
                     /locus_tag="SFZ04_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8065879.1"
                     /translation="MDNSGVCLPFLACILGREMNQGEFYFEGSGYRLYCFVYKYWNRN
                     MNSSYYFGDENYLIRAVLNSNHLQIQSNLNKNTIFVSYHSIQDMGAPVQNKIELYKCY
                     QELGYDATLHLIKDENDIDGRFVKSLEHGLRMTDRALFRKELPLMLEKLQGRKSFMQE
                     NSISYPCGNKVFVFKDLEDKFELEMIN"
BASE COUNT         1628 a          735 c          573 g         1624 t
ORIGIN      
        1 tataccacaa ccatgatcta aatttttaat aaattttcca tcaattttat tttcatctat
       61 caaatttaag cttacatcgt aacctaaaat ttttaatatt tgcatggtta gttctttaaa
      121 atttgctgga gttaaaggat cttctttact atgataactc acataaataa tatttttatt
      181 tttttgactt tgcaaaatca aatgatcctt atttaacaat gttctaataa aataattttc
      241 attattaaaa aaataaggtg aattttcttt acgcgtccag tgggttttta gaaaacaact
      301 cacaaaaaaa tgattgccct gtatatacat atctccatta gtatctttac tttcaaattc
      361 caactctcta ccaataatat aattaagcgg tggaacagcc gaacccgaat tatcaatcac
      421 gccatcaaca taccaagggg ctattttagc tataagcaag gctaagtatc ctccataaga
      481 cccccccccc ataaattttt ggtaaatctg caaattttgg aaagcgttta accaaatctt
      541 ttaaagcatt gatatgatca atagctgcca taatgccaaa attttgatat tctccacgcg
      601 aaggaataaa agttgcactt agtctttctt caaaatcata aggcaatcga tttaacattt
      661 ttaattctgt cataatctca cttaaatatt cacaatgact gaccacagta ttgttggcca
      721 attgatcgca tgggatattg tatttacaaa gtactttttc cataagtctt aaatcttctt
      781 ttgtaaaatc tgctagcgtt gaatatttct ccacatccga gggtctttga caaaaacaat
      841 gataaaaaac atttatcgtt gccacatcaa atttcttagc tatgtaattt ctataagaat
      901 ctaaaaaatg tatattagca ttagccccat aacctcctat gataaaaact atagctttca
      961 tttctttttc atcatcataa ctgatgcggt attcaagttt tgaagttctt tttatattta
     1021 attctacatc atcacaagaa ttgatttcaa aggtttgatt tatgagcata taaaggcctt
     1081 ttttattaat ttatagatat tatattacaa aaaattaaaa aggtaaatca tgacaactca
     1141 catctatgat tttttagaaa aaagtttaat caaatttagc gaaaaaactg cttttgtaga
     1201 accctttgcc aaggaaagaa aagaaatcac ttataaagac tttgatcttt tttctaaaaa
     1261 actagccagt gaaattttaa aaactttaaa aaatgataat cctactcaag ttcctgtttt
     1321 aatcatcttg cctaaaggga ttgattgttt gatttcattt tttggagtgg cactcagtgg
     1381 aaatttttat acccttttag atgaaaaaag tcctaaagaa agagtagaaa aagtcataga
     1441 ggttttaaag cctaaacttt ttatcacttc aaaggactta aattttaact tagatttacc
     1501 tacgctttat acacaagact ttgaaagttt tgatatagat gagagtttaa taaagcatgc
     1561 caaagaaaaa catatagata ctaatttact ctatgttttc tttacaagtg ggagcacagg
     1621 tattcctaaa ggagtaagca tagcacataa gagtgtgatt gattatactt tttgggtgtg
     1681 tgagactttt aaatttgatg agaatgaaat tttagccaat caagcaccat tttattttga
     1741 caatagcatt ttagatattt tttcaagtgt aaaatcagga gcgactttac accttttacc
     1801 taatcatctt tttgcctttc caaataaaat tttagaatgc cttgaaaaag aaaaagtaag
     1861 cactatattt tgggtgcctt cggtgctaat ttattttgca aatacggaag ctttgaataa
     1921 ttttagttta aataccttaa aaaaaatact tttttgcggt gaaatcatgc ccaataaaca
     1981 gctaaatatt tggcgtaaac acttacccaa tgccttattt gccaaccttt atggcccaac
     2041 agaaatcact gatgtatgtt ctttttatat catcaatcgc acttttaaag atgaagaact
     2101 tttacctata ggaaaagcgt gcaaaaacac agaactttta gtttttgatg aaaatatgaa
     2161 tttcataagt cctaaacaaa taggtgttaa aggggagctt ttcgtacgtg gaacttcttt
     2221 gtctttaggg tattataatg acaaagaaaa aaccaaacaa gcttttattc aaaatccttt
     2281 acatgataat tatttagatt tactctataa aacaggagat atcgtttctt ataatgaatt
     2341 tggagagctt ttgtgctatg ggagagtgga taatcagata aaatatatgg ggcataggat
     2401 agaacttgga gaaatagaaa gcgtgataaa ttcccatgcg aatattaaaa acagtgcatg
     2461 tatttttaaa gaagatatta tttgttttta tgaaagtgaa gaagaaatta attttaaagc
     2521 ttttttaaaa gataaattac cttcttatat gatcccaaaa aattttatta aactcgacaa
     2581 atttaagctt aatcaaaatg gaaaaatcga tagaaaggtt ttaaaagaac ttgtttaaat
     2641 aaatatttta taatttcaaa aaactaaagg agaaaaaatg caagaaatca aacaattttt
     2701 tatcaatata gaaagaacag atatcaatga gagtatggaa aatctagtaa gtgaagattt
     2761 tatcgatagt atcgatatca tggctttggt tgccgaaata gaaaaatttt ataaaaaacc
     2821 cttaaaagca gaatttatca cacctgaaaa ttttgaaagc tttgaaaata tcaaaaaaat
     2881 gcttgaaatt gcaatgaaag actaatcttt ccttgcaagt tcaagctgtt cttttaaaga
     2941 actgatgatt tcatttttag aaacaataat ttgcgctata aaatccgcca catcatccca
     3001 atctttactt agcatatggg ttaaagtata attttgttca tattcttccc aattcacagg
     3061 agtaaaaaga gaatttttat gcgggaaata tttgtttttt acccattcaa gtgaagaagc
     3121 aaaataatcc acataagctt tagcaatatc tttttgcact gcaaatttta atcttttttc
     3181 tttgctgcct tcaaattttc ttcttgccat aaaaagcaaa gaattaagat tatcctgctt
     3241 taaatctttt tgatttaatc ttgacataag ctccattcct aaaagattaa aactttcatt
     3301 tttggtttgt tttaaaacaa aactctcatc ccattcaagt cctaaatgat aaacaaaatc
     3361 cttaagtaaa gtccctccta cataatcctc ccttagaagt cttactatca aattttcttc
     3421 tccaaatacc tcagcatgag ttttgcaaat ccattcatag tcaaaaatat attttctagg
     3481 atgatcttgc ggagcaaaat cagcagaata ataccccata ttgtttttat gatcttgaga
     3541 acaatgtgag tttaaataac ccaaagtatc tctaaaatac acaataatat aaatttgagt
     3601 aaaacctaac tctctcataa tcttttctaa aatttctaca tgttttttgg tagaaaaatc
     3661 ccaaactata ccctcagctg aaaaaataaa ttttttatct ttatgtaaag cactttcact
     3721 tttaaaattt tctatagctc taagaagtct ttcatttgtg atatgactta aaacactctc
     3781 tttttttaaa atatcttctt tttgaaccaa ttctaaaacc atatccacca aagcccaatg
     3841 cctatttgcc actctaagac tttttgggta aatataagct ttttgcaaaa gcttttcttc
     3901 gttttgcatc aagaagcctt gtttttcttg atttcctgta ttagtagttc ctatatgtaa
     3961 atatgctgtc attttatatc ctttatcttt attttaattt atcatctcta actcaaattt
     4021 atcttctaaa tccttaaaca caaatacttt attcccacaa ggataagaga tagaattttc
     4081 ttgcataaaa gattttcttc cttgtagttt ttcaagcatt aaaggaagtt cttttctaaa
     4141 taaagcccta tcagtcattc taagtccatg ctctaaactt tttacaaatc taccatctat
     4201 atcattttca tcctttatta aatgtaaagt tgcatcatat cctaattcct gataacactt
     4261 ataaagttct attttatttt gcactggcgc acccatatct tgtatactat gatagcttac
     4321 aaaaatggta tttttattta aatttgattg aatttgaaga tggtttgaat ttaaaactgc
     4381 tctgattaaa taattttcat caccaaaata ataagaagaa ttcatatttc tattccagta
     4441 tttatataca aaacaataaa gtctataacc acttccttcg aaataaaatt ccccttgatt
     4501 catttctctt cctaaaatgc acgccaaaaa tggcaagcaa acacctgaat tatcaatcac
//
LOCUS       DARGBD010000117         4556 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.117, whole genome shotgun sequence.
ACCESSION   DARGBD010000117 DARGBD010000000
VERSION     DARGBD010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4556
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.117"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..137)
                     /locus_tag="SFZ04_001644"
     CDS             complement(<1..137)
                     /locus_tag="SFZ04_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEG8065880.1"
                     /translation="MYILVTGGAGFIGSNFLLYFFEKNPDAKIINLDFLTYASNISNL
                     N"
     gene            complement(137..1015)
                     /gene="rfbA"
                     /locus_tag="SFZ04_001645"
     CDS             complement(137..1015)
                     /gene="rfbA"
                     /locus_tag="SFZ04_001645"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEG8065881.1"
                     /translation="MKGIILAGGSGTRLYPSTLTLCKQLLPIYDKPMIYYPMSVLMLA
                     KIKEVLIISTPKDIDRFKELFKDGSFLGMQIQYKIQERPEGLAQGLILAQDFIQNDDI
                     ALILGDNIFYGQGFSDILENAKDDLKKGFASIFSYHVKDPERFGVVEMDQNGNVLSLE
                     EKPKNPKSNYVATGLYFYNNDAIDIAKNIKPSARGELEITDVNIEYLRLNKLKSQHLG
                     RGFAWIDTGTHDSLIEASSFVQTIELRQGYKIACLEEIAYNNNWIDNETLEKRALLLS
                     KSNYGQYLYKILSQGK"
     gene            complement(1026..1727)
                     /locus_tag="SFZ04_001646"
     CDS             complement(1026..1727)
                     /locus_tag="SFZ04_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8065882.1"
                     /translation="MNISIVILTFNSQKYLQEVLQSVNFANEIILIDSGSTDDSLIIA
                     KTFKNVKIFHQDWLGFGKQKQFGVEKANNDWIFVLDSDEVFTEELKEEVLQIIKNPSF
                     KAYKVARLNFFFGETITKMGLYPDYNIRLFHKKYAKFNEREVHESIICQEKIGKLKHH
                     FLHYAYENIEQFIDKQNKYSSLNPKKNNLLKALINPYWTFFKLYFVKLGFLEGKRGFI
                     IAKLYAQYTFWKYIK"
     gene            complement(1724..2602)
                     /gene="htrB"
                     /locus_tag="SFZ04_001647"
     CDS             complement(1724..2602)
                     /gene="htrB"
                     /locus_tag="SFZ04_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HEG8065883.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPDCILHFLALIVARIAFHLNKK
                     HRKIIDTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALKRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEEGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNQGIYS"
     gene            complement(2592..3620)
                     /gene="waaC"
                     /locus_tag="SFZ04_001648"
     CDS             complement(2592..3620)
                     /gene="waaC"
                     /locus_tag="SFZ04_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HEG8065884.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQTKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKIMDLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIINTGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            3687..4481
                     /locus_tag="SFZ04_001649"
     CDS             3687..4481
                     /locus_tag="SFZ04_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG8065885.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENELEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYVDFLSYMRDFLREKKSDRSYTEVFAKACESEISKVQS"
BASE COUNT         1498 a          644 c          645 g         1769 t
ORIGIN      
        1 ttatttaaat ttgatatatt gctagcatat gttaaaaaat ctaaatttat aattttagca
       61 tctggatttt tctcaaaaaa atataataaa aaattactac ctataaaacc agctccgcca
      121 gtaactaaaa tatacattat tttccttgac taagtatttt atataaatat tgaccataat
      181 tactttttga aagtaacaat gctctttttt ctagggtttc attatctatc cagttgttat
      241 tgtaggctat ttcttctaag caggcaatct tataaccctg ccttaattct atggtttgca
      301 caaacgaact agcttctata agactatcgt gagttcctgt gtcaatccaa gcaaaacctc
      361 ttcctaaatg ttgtgatttt agcttattta accttaaata ttctatattt acatctgtta
      421 tttcaagttc tcctcttgca cttggtttta tattttttgc aatatctata gcgtcattat
      481 tataaaaata taaaccagtt gccacatagt tgctttttgg atttttgggt ttttcttcta
      541 ggcttaaaac atttccattt tgatccattt ctaccactcc aaatctttct ggatctttta
      601 catgataaga aaaaatacta gcaaaccctt tttttaagtc atcttttgca ttttccaaaa
      661 tatcactaaa gccttgtccg taaaaaatat tatctcctaa aattaatgca atatcatcat
      721 tttgaataaa atcttgcgcc aaaataagtc cttgcgctaa accttctgga cgctcttgaa
      781 ttttatactg aatttgcatt ccaagaaaag aaccatcttt gaatagctct ttaaatctat
      841 caatatcttt tggagtagaa ataatcaaaa cttctttaat ttttgcaagc attaaaacag
      901 acataggata ataaatcatt ggtttatcgt atataggtaa aagttgcttg cataaagtta
      961 atgtgctagg ataaagccta gttccactac ctccagctaa aataatgcct ttcattgttg
     1021 cactcctatt taatatattt ccaaaaagta tattgtgcat aaagctttgc tatgataaaa
     1081 cctcttttgc cttctaaaaa acctaatttt acaaaataaa gtttaaaaaa agtccaataa
     1141 ggatttatta aagctttaag aaggttattt tttttaggat ttagacttga gtatttgttt
     1201 tgtttatcta taaattgctc gatattttca taagcataat gtaaaaaatg atgttttaat
     1261 ttccctattt tttcttgaca gattatgctt tcgtgaactt ctctttcatt aaatttggca
     1321 tattttttat gaaatagtct tatgttataa tcaggatata gccccatttt tgttattgtt
     1381 tctccaaaga aaaaatttaa tcttgctact ttgtatgctt taaatgatgg atttttaatt
     1441 atttgcaata cttcctcttt taattcttca gtaaaaactt catcactatc taaaacaaat
     1501 atccaatcat tatttgcttt ttcaactcca aattgttttt gctttccaaa accaagccaa
     1561 tcttgatgga aaattttcac gtttttaaaa gtttttgcta ttattaaact atcatctgtg
     1621 cttccgctat ctattaaaat aatttcattg gcaaaattaa cactttgtaa tacttcttga
     1681 agatattttt ggctattaaa agttagtatt actattgaaa tattcatgag tatattcctt
     1741 gattataact agcaaagcgt ctatgaaaaa aaaagtattc ccaaggtctt tttttaatca
     1801 tttcttcgca actttgtgct tgataaagtg tcagttcttc taaacttgca ttttgagaat
     1861 cttttgcttt aaaaaactct atgcaaaatt taccctcttc tttataggca taaacaggga
     1921 tgatcaaagc attgcttctt tgtgcgataa ggcttgctcc catttgataa ttcacttctt
     1981 tgttaaaaaa ttttaatctt acgctttcgt tttctacgca gtcttgatca gttaaaattc
     2041 ccaaagttct cccttttttt agagcgctta gcatttgtct tatgccgcct tttttgtcga
     2101 taagttctat gtcaaattgg gtgcgacttt ggcttaaaat ttcatacata atttcacttt
     2161 ttaacttttt ccctactata gaaattgcac catatttagc tgcataagca aggcttaaaa
     2221 tttcccagtt tccatagtgt gcagttgtga agataatagg acgctttaaa gctagagcat
     2281 ctataagaaa attttcatta atgaaattta ctttattgag aattttttct ttagtggtgt
     2341 tttgattttg caaacaatca atcccaaatt gagcaaaatt ttcataaatt tttaaagaca
     2401 atttatcgcg ttctttttga gtgtattgag gaaaacagat ttgcaaattt gtatcgatga
     2461 ttttgcggtg ttttttgtta agatgaaaag cgattcttgc tacaatcaaa gctaaaaaat
     2521 gcaagataca atcaggcata aaagtaacaa aaaatttcaa aatataataa agactaagat
     2581 atattctatc gctatttttc attaagtaag cctttggcaa gtttgaagat atcttcttct
     2641 tctatacgcg tgatacaaaa atcactttta tcgatatgct tggcattttg aattttttta
     2701 cctgtattaa tgattttatt gatatgagtt tgaaaagcat tgcggtagct tggtgttgca
     2761 ccaaaaatcg taatagatgc tttatttaaa gcaaaagcta aatgtgttgg accgctatca
     2821 tttcctatga taagatccat tatttttgta aaagccatta gctcttcaag attaaatttt
     2881 ggcgctaatt ctatatgtgt ttcatcaata ccactaagat ttaaaacctc tttagcaaat
     2941 tcgtattctt ttacatttcc ccaagcgagc caaatttttg tttgttgaaa ttcattgatt
     3001 aaaagtttgc aaagtatagc aagtttggtt ttaggataga ttttattttc tacacttgag
     3061 cccacatgta tgagtatgtt tttttcgttt ttgtcgagtt tgagtttatt atttaagagt
     3121 tgttttaaat tttcatctac gctaaaaata tcttgtttaa aggctaaatt tttgacatta
     3181 aaatcagtat ttaacataaa ggaggtaaga cttaagtatc ttacaaatac attttcattg
     3241 taatctaact caagtttttg gttgtagaaa ttatgagcaa aactttcttt aagactattt
     3301 ttatcaaaac caaaattatt tctacttaaa attcgactta caatagcaga ttttatgagc
     3361 ccttgtagat ctattactgc attatagttg ttttttcttg ctttaagaag aatttttagg
     3421 ctttttaaaa tttttttgtc ttttaagggc agggcataga gtttgtctat taaaggatgg
     3481 tttttaagta tgccttcaaa tttttcatct acaaaccaat gaatttctat atctttttta
     3541 aaatttttga taaattgcaa aaccacggca ctttgtataa tatcaccaag tgctgacaaa
     3601 cgaacaattg ctattttcat taaaagccta atattttaaa attttttgct atgattttag
     3661 cgaaattatt taaaaaaagg ttaaaaatgg caaaaaatga aggttatatt tgtgtttttg
     3721 attgtgagag tgtgccagat gttgagctta tccgcaaaac tttgggtttt gaaggaagtg
     3781 atttagaggt aagtttaaaa gcacttcagt ggcaaaaaga acaaagtggg agtgagtttt
     3841 tgcctttgcc ttatcataaa attatcagta tttgtgcggt tttaagtgat aattttggaa
     3901 aatttatcaa agtaaataaa attgatgggc aaaatgaaaa agaaatgatt gagaattttt
     3961 tcaattttat agaaaattat gagccaaaat tagtcagctt taatggtaaa aatttcgata
     4021 tgcctgttct tgttttaagg gctttaaaat acaatttaaa agcagcaact tatttagata
     4081 ctcaaagcga taaatggaat aattataaaa caagattttc agaattaaaa cattgtgatt
     4141 tattagaatc cttaggatct aatgggcgtg gaataaagct tgatacactt tgctctatgg
     4201 tgggtttgcc aggaaaatat gatgtgcatg gcgatgaggt gatgaaactt ttttatgaaa
     4261 atgaacttga aaaaattcac gaatattgtg aaagtgatgt tttaaacacc tatatgcttt
     4321 ttttaaaata tgaacttatt aaagctaatg ttagtgaaga agattatgtt gattttcttt
     4381 cttatatgag agattttttg cgtgaaaaaa aatcagatcg ttcctataca gaagtttttg
     4441 caaaagcttg tgagagtgaa atttcaaaag ttcaatctta agtatttaag aaaatatatt
     4501 aaaatttatt tttgacattt tttaaaaaaa ggaatgatga tgaaaattct tattag
//
LOCUS       DARGBD010000118         4551 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.118, whole genome shotgun sequence.
ACCESSION   DARGBD010000118 DARGBD010000000
VERSION     DARGBD010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4551
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.118"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..152)
                     /locus_tag="SFZ04_001650"
                     /pseudo
     CDS             complement(1..152)
                     /locus_tag="SFZ04_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K+-transporting ATPase subunit F"
     gene            complement(294..1718)
                     /locus_tag="SFZ04_001651"
     CDS             complement(294..1718)
                     /locus_tag="SFZ04_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG8065886.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCVGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FAPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            complement(1882..3132)
                     /locus_tag="SFZ04_001652"
     CDS             complement(1882..3132)
                     /locus_tag="SFZ04_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEG8065887.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTSK
                     SQELAKKIIECLNEEGYFEHDEEFLKEYSLEEIERVRARFKFLDPTGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(3132..3860)
                     /gene="lptB"
                     /locus_tag="SFZ04_001653"
     CDS             complement(3132..3860)
                     /gene="lptB"
                     /locus_tag="SFZ04_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEG8065888.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(3853..4260)
                     /gene="tsaE"
                     /locus_tag="SFZ04_001654"
     CDS             complement(3853..4260)
                     /gene="tsaE"
                     /locus_tag="SFZ04_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEG8065889.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSIMQRYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(4257..4502)
                     /locus_tag="SFZ04_001655"
     CDS             complement(4257..4502)
                     /locus_tag="SFZ04_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEG8065890.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLALPSTKSIPKNAQNEYVVKL"
BASE COUNT         1616 a          865 c          552 g         1518 t
ORIGIN      
        1 ataaagagca agtattaagc ttaaaactag taaaaatatc atccgcttgt cctagtttga
       61 atttcacaaa aacggataaa caaccataaa ctaccaaaag ctaaaagcag aagcaaagca
      121 aagataacat ccataggata gccctttctc attgattcaa aataggattt atcctatcct
      181 tgttaagctt atattttgat taatactaat tttatgattt atttataatt tttatctata
      241 ttaaataaaa agacaaatga agaatttagc aggaaaaatc ctactaaaaa tttttaaaga
      301 taacccgctg ccatagcgat aaaatatcct gctatacaag aagtgattac acctataaga
      361 cctggtaaaa taaaactatg attgataaca aatttaccaa tgtgagtagt acctgatcta
      421 tcaaattgta tagtagccaa atcgcttgga taagttggta aaatataata tccataacaa
      481 gcagccgcaa aggcaacaat tacaccaggt tcaacaccaa ttcctaaagc caaaggagca
      541 aaagccgaaa tagccgctgc ttgagagttt acaaattttg aaattaaaag aagcattaca
      601 gcataagtcc aaggatgctc ttttactata tctccaagcg ctgctttcat cataggagtg
      661 tgaactgcaa acatagtatc agccatccaa gaaattccaa aaactgcaac aagagctatc
      721 atacctgatt taaaaatttc attagagccg attttctttg catctgtttt agtaaagatg
      781 ataatcaaag aacctgctaa aagcataaac atctgaataa ctgaaaccat ggataaaaca
      841 tccattttag gattgcctaa agcgtctact tgaggaatgc cattttttac aacttgtccc
      901 cagtttggac gcaagaaatc aaatacacct aataaagcca ctaaagcaat agctcctaag
      961 aaaatccaca ttgcaaccca attgcttttt ggaagtttaa cacctaaaag tgttttagaa
     1021 tccccataaa catatttttt aaattcagga tctttaagtt tttcttgaaa tacttcatct
     1081 ttatccaaat cttttcctct aaaccaagaa aaaattccca cacataaaac accaaaaagc
     1141 gtactaggta tagtaatttg aagaagattg atatagccat caaaacctgc taatttatga
     1201 ttagcattta aaagcaaagc agtcaaactc acaacagcca cagatacagg agatgcaata
     1261 atacccattt gtgatgatat agaagctgcc gccattggac gctcaggacg aataccgttt
     1321 ttaatcgcta tatcataaat aataggcata atagtataaa ccacatgtcc tgttccacaa
     1381 agtatagtca aaaagcaggt tacaaaaggt gctaatattg tcaaaaactt aggattgcgt
     1441 cttaaaattc tttctgctat ttgaagcata acatccaaac caccacttgc ttgcaaagtt
     1501 gcactcgcaa ccactaccgc taaaatcgta agcataacat ctatggctgg ttttccaggc
     1561 tttatatgaa aagcaaatac aagcattaaa atacctatac caccaagtaa accaagcgct
     1621 atgccgcctt tttttgcacc gtaaaaaaga caaattaaaa cgataatgat ttggattgca
     1681 aattgccctc cctcactaag gcttgttaaa aagtccattt taactccttt gaaaattaat
     1741 atttaaaaac agttattatt gtatcacatt tttaaattaa agaataatat ttctaaaaat
     1801 aaaacaataa ttttttatat tatttaaatt aaatttaaat ataaaacaaa agtgtaatgg
     1861 gtttgataga ttgatagaat tttatccttc aagttcatat aatttttttc tatctgtaga
     1921 gcttgctata ttaagatgtt tgcgatattt tgtaatagtt cttcgcccta tatcgacttt
     1981 aaattcttct ttgattaatt ctaaaatttt actatcgctt aaaggtttat ttcgatcttc
     2041 attctttact aaatttgcca caaattcttt aacacctaca tttgaagtct ctccctcttc
     2101 atcaagagca aaagcaaaaa aatcacgcaa gggaataagt cctctttcac aacttaaata
     2161 tttatttgcc acagctcttg atatagtcga agcattgcgt tctaaatcaa gtgctaaatc
     2221 cttaaaagtc ataggtttta tctcttttcc catgaaaaaa tcatattgat attctactat
     2281 cataagccct attttataaa gagtagcttt tctcatcgct aaagcatcaa ctaaattttt
     2341 tgcttctttg atgtaatgac ttaaaaaatc atgctctaaa ccatcagttt ggattgaaat
     2401 ttcaggataa taatcatcat tgatttttac tttaatttca ccattttctt tataaacaaa
     2461 aatatcagga acaattatac gagaatcttc aaaatattcc aaaaaagggg gagtgctaaa
     2521 gcgcttaagt acagctaatg cttctttata taaaggctct ttggtatagt tttgtatatt
     2581 ttcaaaatcc ataatcaaca ttctacaaaa ctcatcaata tcttcatcta actccatatt
     2641 ttcaagagca aataaaaatg cttctttata atctttagct cccactcctg taggatctaa
     2701 aaatttaaat cttgctctta ctcgctcaat ttcttccaaa gaatactctt ttaaaaattc
     2761 ttcatcgtgt tcaaaatatc cttcctcatt taagcattct ataatttttt ttgcaagttc
     2821 ttgagatttg cttgtaggaa acaaaggagg aagaatctgt tcatttaaaa gctcataaac
     2881 actttttttg gcaagtcctt tactatccac aaaagccgaa tttacattat gtttataaaa
     2941 tgaatcaaaa taattcttac ccttatcatg agtttgtatc gaatcttgaa catttaagaa
     3001 aggattatcc tcagcaaatt tatctaaatt ttcttttaaa tcctctatat ttgcttgtaa
     3061 aataggcaac caagagcgta aagtttgaga aattttagtc ttgggcgctt gggtgatttt
     3121 ttgctttaac atcaatcaag gagtttaaac tccgctccta aataatactt tttcacgtct
     3181 ttattggttg caatttcatc agcattccca ctagcaagta aagaacctga tcttataaca
     3241 taagctctat cacaaatagc caaagtctca cgcacattat gatcggtaat taaaacccca
     3301 attcctaatc ttttaagctc tttaattaaa gtttgaattt cagctactgc tataggatca
     3361 acacctgcaa aaggctcatc aagaagcaaa aacttaggtt cacacatcaa acttcgagcg
     3421 atctcacaac gccttctttc gcctccactt aaacttaaac ctttccttaa acgaataggt
     3481 tctatactta aaagttcaag catttgctca actttatcat gtaaaatttt tttatcttta
     3541 taaaaaatct gagccgctaa aagcaggtta tcttctacac ttaaatcctt aaaaatacta
     3601 ctttcttgag gtaaataacc tatccctgat cgagctcttt tatttaaagg atcttttgtc
     3661 acatctaaac catctaaaag aacttttcca ctacttggag aaataagtcc acatatcata
     3721 taaaaagttg ttgtttttcc tgcaccattt ggccctaaaa gtcctacaac ttctccgcta
     3781 ttaacctcca aagaaattcc atgtataatc ttagtttttt taataatttt ttccaaattt
     3841 acaatttcta atttactcat aaatttcata ctttcttttg tcatctttaa tgctaatttt
     3901 aatctggata gtagaaattc caaatttcat taaagttttt ttcaaatttt caccgcccca
     3961 ttcaaccaaa tgcaaacctt tttcaaaaaa attttcaaat aaaccattcg ctaaaagtcc
     4021 ttctaaacct tcttgataaa tatcataatg ataaatgcaa atatcatgat tttcatatct
     4081 ttgcataatg gaaaaagttg gagaatccac ccttgcatca agaccaagaa atttaaccca
     4141 agcttgcact aagcttgttt ttccgctagc caaatctcct tgaagcaaaa caacaccttc
     4201 tttaggcatt atttgaagca tcgttttgat ctcatttttt gctaaaataa attctttcat
     4261 aattttacca catattcatt ttgtgcgttt ttaggaatgc ttttcgtact aggtagagct
     4321 agcactttat atttttgagt gtattcagta aaatgtaaag tgataatatc acctacctta
     4381 acctctttac tcgccttaac aataacgcca ttaatcccca ctacaccact tttacacata
     4441 tcttcagaaa tagctcttct tttcgtgata ttaactacat ttaaaaattt atctactctc
     4501 ataaaagcaa ttttagcaaa aaaaatcaat ttttggaaca aaatttgctt a
//
LOCUS       DARGBD010000119         4146 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.119, whole genome shotgun sequence.
ACCESSION   DARGBD010000119 DARGBD010000000
VERSION     DARGBD010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4146
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.119"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            69..578
                     /locus_tag="SFZ04_001656"
     CDS             69..578
                     /locus_tag="SFZ04_001656"
                     /inference="COORDINATES: protein motif:HMM:NF016846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HEG8065891.1"
                     /translation="MKRIIGEVIQEGNIYIDGQGYLGVVRNLKLPDIEQEMIETKGVL
                     GANYSSGVLKPLEISFKLAVVDPVLYAAFFHTTFSEIKAPLLFRESVHKGGKNYGINA
                     EFLGEFISISESDHESGKEVEAEIKMAVHFYMQRRNNIPIITYDHKNTILMINGVDMM
                     SDVRSNLTL"
     gene            731..970
                     /locus_tag="SFZ04_001657"
     CDS             731..970
                     /locus_tag="SFZ04_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HEG8065892.1"
                     /translation="MKEKIIKLENGEELKMREPNVRVLKNATNKSEKEMEQTIYMIAA
                     LTNKQESEIEDLNLKDFKALQDALKDFLVEAGVIA"
     gene            complement(1082..1387)
                     /locus_tag="SFZ04_001658"
     CDS             complement(1082..1387)
                     /locus_tag="SFZ04_001658"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065893.1"
                     /translation="MKVLKFINDDIISHIALLLTTLIPAFYISYQSASDGFFNIMAIF
                     IFSYFASIIITAILVMIMPPIALLLILPTWLIVISLDFILFAILKIYFLKNKTIKNS"
     gene            1429..3651
                     /locus_tag="SFZ04_001659"
     CDS             1429..3651
                     /locus_tag="SFZ04_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEG8065894.1"
                     /translation="MENAGSIGIGVILGLAIKNASAVGKVVKDFSNLEKIAAKTKLGI
                     SGLQKELNTLKLNANLRAELKAQRKGLQDELFSLGNIISGGIVGKSIKVGIDFESAMA
                     DVKKVTDLSEGHTLEGLKQDILDLSKKLPMTAEEIANIVAEGGKLGLASKEALEFGKT
                     ATAMGVAFEMSANEAGEAIGGLMANLQTDVKGIKDLGDSINYLADKGSSDAKNIVNIV
                     SRIGGMGNLIGLQRENMAALAATLDEVKIPAEVAGTAISSMFTKLSTADTLGAKAEEA
                     FSQLGLSGEFMKKALNRNSQEAINILLSRIKTLDKESQIGVITNIFGNDSGTIRAMAT
                     LVNGYDRYQELLKMTNSEEKKGSMDKELINKCETTASILKILGNNISALAIKFSDALL
                     PVVKLVASGFSFVIDIVDTLLSKFPVLSTIVATATTVFLLAKPAVLAYAIAKNYLKDC
                     TILLKSALIKTRIHLLAFRNSCILSNITLKAKTVTTTIYTTSLKALSFVLGGLNKVFK
                     AVAIGIRVLSMAMMSNPIGLILGGIAIVAGLIIANWDKVKSWFKSFIEWLRPVWEPIY
                     NVIKAVFDKCALVFTSFKDIIMSVASPLAEFLNSIWQGVGDFFYSIFGSLFDWFASKL
                     SWVGDMISSISGFIKDALDFVGLGDDEEVKISQSEQNKEKVFTTNTYKDELAETKSIN
                     HAPSFNNGNINISVNGTFNIATKDGNFNMQEFANTIQKSVFDALRKQEQNKINTTIYG
                     "
     gene            3655..4143
                     /locus_tag="SFZ04_001660"
     CDS             3655..4143
                     /locus_tag="SFZ04_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HEG8065895.1"
                     /translation="MSEYIEIKGLENFFKACDKLIDMDKHGQSIMAGAGESIRNSIID
                     SFKNERSIFNGKWQSLKPATIKQKIKDGKNKGILKRDGDLSNALNWQSEPTKSGVEVF
                     NNIQTKNGFKYGYVHQWGNRKRKIPQRAFLPIDNNKILHPSIRSVIYKDTKDFIVKIV
                     KK"
BASE COUNT         1538 a          503 c          819 g         1286 t
ORIGIN      
        1 tgggcaagtg atttgattaa aactattagt gcggatagtt aataaatttt taaaaggaga
       61 aaataaaaat gaaaagaata attggcgaag ttatacagga aggtaatatt tatatagatg
      121 gtcaaggtta tcttggagtg gttagaaatt taaaattgcc tgatatagaa caagagatga
      181 ttgaaaccaa aggagtttta ggagcaaatt atagtagcgg ggttttaaag cctttagaaa
      241 ttagctttaa attagccgtt gttgatccag tgctttatgc ggctttcttt catactactt
      301 ttagtgagat taaagctcct ttgcttttta gagaaagtgt tcacaaaggt ggaaaaaact
      361 atggtattaa tgctgagttt ttaggagagt ttataagcat aagtgaaagt gatcatgaaa
      421 gtggaaaaga ggtggaagct gaaattaaaa tggcagttca tttttacatg caacgccgca
      481 ataacattcc aatcattacc tacgatcata aaaacactat tttaatgata aatggggtgg
      541 atatgatgag tgatgtaaga agcaatttaa ccctttaaac actgattaat cggagtttaa
      601 ttaacaatac tgggatttta ggattaaagt ttggcttttt gggcattgcg tagcaatggg
      661 tggggaagcc tttaattgct tctcaggcgg aattacttcc gccataaaga aggataaaaa
      721 ggaaagaaaa atgaaagaaa aaataatcaa acttgaaaat ggcgaagaat taaaaatgag
      781 agagccaaat gtgcgtgtat taaaaaacgc cactaataaa agtgaaaaag aaatggagca
      841 aactatttat atgatagctg cacttaccaa taagcaagaa agtgaaattg aagatttgaa
      901 tcttaaagat tttaaagctt tacaggacgc tcttaaagat tttttggtag aagcaggagt
      961 tatagcttag aggctatagc tcttataagt catactttgc attggggatt aaatgaagtt
     1021 ttagatttaa gcttagatga gtttgaagaa gctttagcaa tttcaaaaga atttttaaag
     1081 gctaagagtt tttgattgtt ttatttttca aaaaataaat ttttaaaata gcaaaaagaa
     1141 taaaatctaa acttattaca attagccaag taggtaaaat aagcaataaa gcaatgggtg
     1201 gcataatcat cactaaaata gcagttatga taatgcttgc aaaataagaa aaaataaaaa
     1261 tagccattat attaaaaaaa ccatcacttg cactttgata gcttatgtaa aaagcaggta
     1321 tgagcgttgt taataataag gcaatatgtg aaattatatc atcgttaata aattttaaaa
     1381 ctttcatagt aaagatttta aaatacaatc gcttaaaaag ggttgaatat ggaaaatgct
     1441 ggaagtattg gaattggtgt tattttagga ctagcgatta aaaacgcaag tgccgttggc
     1501 aaggtagtta aagattttag caatttagaa aaaatagcag caaaaactaa actcggcatt
     1561 agtggattgc aaaaagaatt aaacactctt aaactcaatg ccaatttaag agcggaatta
     1621 aaagctcaaa gaaaaggttt gcaagatgag cttttttctc taggaaatat aataagtggt
     1681 ggtattgtag ggaaaagtat aaaagttggt attgattttg aaagtgctat ggctgatgta
     1741 aaaaaagtaa cagatcttag tgaaggtcat acactagaag gcttaaaaca agatatttta
     1801 gatttatcca aaaaacttcc tatgacagca gaagaaattg caaatatagt ggcagagggt
     1861 ggaaaacttg gtcttgcctc taaagaagct ttggagtttg gtaaaactgc tactgctatg
     1921 ggtgttgctt ttgaaatgag tgccaatgaa gcaggagaag ccataggtgg tcttatggca
     1981 aaccttcaaa ccgatgttaa aggcattaaa gatttaggtg atagcattaa ctatttagct
     2041 gataaaggtt caagtgatgc caaaaatata gtaaatattg tgagcagaat tggaggaatg
     2101 ggaaatctta taggacttca aagagaaaac atggcagctc ttgctgctac gcttgatgaa
     2161 gtaaagatcc cagctgaagt tgcagggact gctatttcta gcatgtttac taaactttca
     2221 actgctgata ctttaggagc taaggcagaa gaagcttttt cacaattagg tcttagcggg
     2281 gagtttatga aaaaagcttt aaatcgaaat tcgcaagaag caatcaatat tttactttca
     2341 cgaataaaaa cgcttgataa agagtctcaa ataggtgtta ttactaatat ttttggcaat
     2401 gatagtggca cgattagagc catggcaact ttagttaatg gttatgatcg ttatcaagag
     2461 cttttaaaga tgacaaattc agaagagaag aaaggttcaa tggataaaga gcttattaat
     2521 aagtgtgaga ctacagcttc tatattaaaa attttaggaa ataatataag tgctttggcg
     2581 attaaatttt cagatgcttt actccctgta gttaaattag tcgcttcagg atttagcttt
     2641 gtaattgata tagtagatac cttactttca aaatttccag tgcttagtac catcgtagct
     2701 acagctacaa cagttttttt gctcgccaaa cctgcagtct tagcttatgc tattgctaaa
     2761 aactatctta aagattgcac cattttactt aaaagtgctt tgattaaaac aagaatacat
     2821 cttttagctt ttcgtaattc ttgtatatta tctaatatta ctttaaaagc aaaaaccgtc
     2881 acaactacta tttacacaac ctcccttaaa gccttatctt ttgttttagg tgggcttaat
     2941 aaagttttta aagccgtagc tattggtatt agagtgttaa gcatggctat gatgagtaat
     3001 cctattggtc ttattttagg gggcattgca atagtggctg ggcttattat tgcaaattgg
     3061 gataaggtta agtcttggtt taaatctttt atagaatggc ttagacctgt ttgggagcct
     3121 atatacaatg tcattaaagc agtatttgat aaatgtgccc ttgtatttac aagctttaaa
     3181 gatattatta tgagtgttgc ttctccatta gctgagtttt taaattctat ttggcaaggt
     3241 gttggggatt tcttttatag tatttttggt tctttatttg attggtttgc ttctaagctt
     3301 tcttgggtag gagatatgat ctcatctata agtggcttta taaaagatgc tcttgatttt
     3361 gtagggcttg gagatgatga agaagttaag ataagtcaaa gtgaacaaaa caaagaaaaa
     3421 gtctttacta caaacactta taaagatgaa ttagctgaga caaaaagtat aaatcatgct
     3481 ccaagcttta ataatggcaa tatcaatata agtgttaatg gtacttttaa catagcgact
     3541 aaagatggca attttaatat gcaagaattt gcaaatacta tacaaaaaag tgtatttgac
     3601 gctttaagaa agcaagaaca aaacaaaatt aacactacaa tttatggata aaatatgagt
     3661 gaatatatag aaataaaagg gcttgaaaac ttttttaaag cttgtgataa attaatagat
     3721 atggataaac acgggcaaag cattatggcg ggtgctggag agagtataag aaatagcatt
     3781 atagactctt ttaaaaacga acgcagtatt tttaatggaa aatggcaaag cttaaaacca
     3841 gctaccataa aacaaaagat aaaagatggt aagaataaag gaattttaaa aagagatggg
     3901 gatttaagca atgctttaaa ttggcaaagc gaacctacca aaagcggagt agaagtcttt
     3961 aataatatac agactaaaaa tggctttaaa tatggttatg ttcatcaatg gggaaacaga
     4021 aaaagaaaaa ttcctcaaag agctttttta cccatagata ataacaaaat cttgcaccca
     4081 agtataagaa gtgtgattta taaagatact aaggatttta ttgtaaaaat tgttaagaag
     4141 tgatgg
//
LOCUS       DARGBD010000120         4101 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.120, whole genome shotgun sequence.
ACCESSION   DARGBD010000120 DARGBD010000000
VERSION     DARGBD010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4101
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.120"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..211
                     /locus_tag="SFZ04_001661"
     CDS             <1..211
                     /locus_tag="SFZ04_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N utilization substance protein B"
                     /protein_id="HEG8065896.1"
                     /translation="NSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVINEAIEL
                     AKELANDNSPKFINGVLDALIKAKK"
     gene            208..1047
                     /gene="pyrF"
                     /locus_tag="SFZ04_001662"
     CDS             208..1047
                     /gene="pyrF"
                     /locus_tag="SFZ04_001662"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEG8065897.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKIHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETSDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            1044..1781
                     /locus_tag="SFZ04_001663"
     CDS             1044..1781
                     /locus_tag="SFZ04_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065898.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIKFFQIFYKALAY
                     FVAFRKKLDGEQKIKNLISNINDCFGYHFLNSDFNNLQNFQKSDLFTLPEKHLKYFHF
                     AMIHLCFMVLNPLNFKDSNRHLDKAIDYLVDGTFEIYELIFKEYFLLFSKDKELKDEL
                     RKLKKLEFKILMQETSKIKLLNLSAEK"
     gene            complement(1875..2759)
                     /locus_tag="SFZ04_001664"
     CDS             complement(1875..2759)
                     /locus_tag="SFZ04_001664"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065899.1"
                     /translation="MQKIDEAHKQRIQKIDEVHKQRMQKINENFEKEKERKKDLKFNK
                     FQTTSHEIFTIKTPENEDVEVELACTAGLIQTSQIDYGEFVKKEFLYKCFPVTWNDFL
                     KLNKYEKILAYTVKDCNDIGLLKEVYEQMFKYLKWQSELPEYLKKDIRSRKRYLHEFS
                     NPVQIKSKLSLKAYRYYINFFLNEIPEGSYFPMQIMHRGDELSEALYNTYFLKDDESI
                     DMYYPPNFYGDTSSFDIVEPRFFNSREYYKNYKPFNRFDLKPHSDYDFNIPKYIVKHY
                     LDMKTIVKEDEHHKRIFC"
     gene            complement(2901..3533)
                     /locus_tag="SFZ04_001665"
     CDS             complement(2901..3533)
                     /locus_tag="SFZ04_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8065900.1"
                     /translation="MTANDFKQIREKLGLTQEQLGNKLNLTRQQIINIEKGKTPISKK
                     YFDNISKLSKRFYIDKEENALNKDRNKQEINFYSIPKLNISASAGGGNELIGLEEYET
                     GEMLELSKAFFKTTPKNVKAIKVDGYSMIPMLLPDSWVIFEEIHEYQGDGLYILNFDN
                     QLMVKLLQLDPISKVLDIISVNKDYKSYSLDLKDSQVEIIIQGKVLRSII"
     gene            3678..3878
                     /locus_tag="SFZ04_001666"
     CDS             3678..3878
                     /locus_tag="SFZ04_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065901.1"
                     /translation="MIKAYFENNAINVKAFARTHNISYDILHRIIKGEITGERNTKGS
                     TKAVFKKLLELGIINELPQGLK"
     gene            3875..>4101
                     /locus_tag="SFZ04_001667"
     CDS             3875..>4101
                     /locus_tag="SFZ04_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8065902.1"
                     /translation="MVYFLETKEAAQAFNVSTGALRLAASRNSNKYEWLKVDNEKGGR
                     GGKKLLFKISKDKLLTAFNQELITKNTLIYD"
BASE COUNT         1480 a          581 c          548 g         1492 t
ORIGIN      
        1 aaattcattt ctaaatgata atcaaattac agctttagga catgtagaaa gagctatact
       61 aagacttgga gcttatgagt tactttttac cgatactcct agcgccattg tcatcaatga
      121 ggctatagaa cttgctaaag aacttgctaa tgacaattct ccaaaattta taaatggagt
      181 tttagatgcc ttaataaagg ctaaaaaatg aagctttgtg tcgcacttga tctttctaca
      241 aaagaagaat gcttacaact tgccaaagaa ttaaaaaatt tagacatatg gttaaaagta
      301 ggtttaagag catatttaag agatggtttt aaattcatag aagaacttaa aaaagttgat
      361 gattttaaaa tatttcttga tcttaaaatt catgatattc ccaacactat ggcagatgct
      421 tgcgaagaag tatcaaaact tggtgttgat atgatcaata tccacgcaag tgctggaaaa
      481 atagccatac aagaagttat gacacggctt agcaaatttt caaaaagacc tttagtttta
      541 gcagtttctg ctcttacgag ttttgatgaa gaaaatttct ttagtattta tagacaaaaa
      601 attgaagaag ctgtaattaa tttttcaaaa atatcctatg aaaatggact tgatggtatg
      661 gtatgctctg tttttgaaag caaaaaaatt aaagagcaca caagttcaaa tttcttaacc
      721 cttactcctg gaattcgtcc ttttggagaa acaagtgatg atcaaaaacg tgttgctaat
      781 cttgcaatgg ctagagaaaa tttgagtgat tatatcgttg tgggaaggcc tatatataaa
      841 aatgaaaatc ctagggctgt atgtgaaaaa attttaaaca aaatacacag aaaaaatata
      901 agcgaaaacg atatagagca aaattatgaa gtaattcagc aaaaagaatg ggatatgtgt
      961 aatcactttg aagaatggat taaaactcag cctgataaag aacatgcttt aaaagaattt
     1021 tatgctaagt gtgggataaa atattgaatt atcaacaatt agaatgcgat tactttaatc
     1081 tttacaatca gtttcttagc gtggattttc aaatttcatt atttgaaaaa gatcataaag
     1141 gtttaattaa agattttata tttttttatt atcaaatttt aaaacaaaaa gacttgagct
     1201 acttgcttga ggtaagaaat aaaatttccc tgaaagttta taattatatg caagagcact
     1261 ccacttctcc aaaagattta agtcttattt gtctaagaga aaataaacat attaaatttt
     1321 ttcaaatatt ttacaaggct ctcgcttatt ttgtagcctt tagaaaaaaa cttgatggag
     1381 aacaaaaaat taaaaatttg atttcaaata tcaatgactg ttttggctat catttcttga
     1441 attctgactt taacaatctt caaaattttc aaaaaagcga tttgttcacc ttacctgaaa
     1501 aacatcttaa atattttcac ttcgccatga ttcatctttg tttcatggtt ttaaatcctt
     1561 taaattttaa agactctaat cggcatcttg ataaagcgat tgattatctt gtcgatggaa
     1621 cttttgaaat ttatgagctc atctttaaag aatatttttt attgttttca aaagataaag
     1681 agctcaagga tgaacttaga aaattaaaaa aattagaatt taaaattcta atgcaagaaa
     1741 cttcaaaaat taaactactt aatctgtcgg cggaaaaata aaatttccat ttggaaaaat
     1801 aaaacttcca taaaagtgga aattttattt ttctacaaac cttaaactta aaatataact
     1861 ttattaaaat aaaactaaca aaaaattcgt ttatgatgtt catcttcttt aacaatggtt
     1921 ttcatatcca aataatgctt tactatatat tttggaatat taaagtcgta atcagagtgt
     1981 ggctttaaat caaaacgatt aaaaggtttg taatttttat aatattccct actgttaaaa
     2041 aatctaggtt ctactatgtc aaaacttgat gtgtctccat aaaaatttgg tggataatac
     2101 atatctatac tttcatcatc ttttaaaaaa taagtattat ataaagcttc gctcaactca
     2161 tcacccctat gcattatttg cataggaaaa tagcttcctt ctggtatttc atttaaaaag
     2221 aagttgatat agtagcgata agcctttaag cttaatttgc tttttatttg aacgggattt
     2281 gaaaattcgt gtaaatatct ttttctagat cgtatatctt ttttaagata ttcaggaagc
     2341 tcactttgcc attttaaata tttgaacatt tgctcataaa cctcttttaa caatccaata
     2401 tcattacaat ctttaactgt atatgccaat attttttcat acttgttaag ctttaaaaaa
     2461 tcgttccaag ttactggaaa acatttgtat aaaaattctt tcttaacaaa ctctccataa
     2521 tcaatttggc tagtttgaat taatccagcc gtgcaagcta attcaacctc aacatcttca
     2581 ttctctggag tttttatggt aaaaatttca tgtgaagttg tttgaaattt gttaaatttc
     2641 aagtcctttt ttcgctcttt ttctttttca aaattttcat ttattttttg cattctttgt
     2701 ttatgtactt catcaatttt ttgaattctt tgcttgtgtg cttcatcaat tttttgcatt
     2761 tcctgcttat attcattcca aatttctttt accggcttat ttggtattcc ttttattttt
     2821 ctatataaat aattacataa gagaaaaata aaaataactg ctaatatcga taatactata
     2881 ttcactttat ttcctttaaa ttatataata gaacgcaaaa ccttaccctg tataatgatt
     2941 tcaacttgtg agtcttttaa gtccaaacta tagcttttat aatccttatt tacactaata
     3001 atatctaaaa ctttacttat tggatctaat tgcaaaagtt taaccataag ttgattatca
     3061 aagtttaaaa tgtatagtcc atctccttga tactcgtgta tttcttcaaa tataacccaa
     3121 ctatcaggta aaagcattgg aatcatagag tatccatcaa ctttgatagc ttttacattt
     3181 tttggagttg ttttaaaaaa ggctttacta agttcaagca tttcacctgt ttcgtattcc
     3241 tctaatccta tcaactcatt acctccacca gcagaggctg aaatattaag ttttggtata
     3301 gaataaaaat taatttcttg tttatttcta tctttattta gtgcattttc ctctttatca
     3361 atgtaaaatc ttttacttaa cttgcttata ttatcaaaat attttttgct aataggtgtt
     3421 ttgccttttt ctatattaat aatttgctgt cttgttaaat taagcttatt acctaattgt
     3481 tcctgtgtaa gtcctaattt ttctcttatt tgtttaaaat catttgcggt catatattac
     3541 ctttataaaa agtaaaatat ttaacatatt ttattgacta atgtaaaatt ttttactata
     3601 atacttcaat taaaattgaa attttatcac aattaaaaat aaacttcaat taaaattgaa
     3661 gtattgaagg agaaaaaatg attaaagcat attttgaaaa caatgctatt aatgtaaaag
     3721 cttttgctag aactcacaac attagctacg atattttaca cagaattatc aaaggcgaaa
     3781 ttacaggtga aagaaatact aagggtagta caaaagcggt atttaaaaag ctcttagagc
     3841 tcggcatcat taatgagctt ccgcaaggat taaaatagtg tatttcttag aaaccaaaga
     3901 agctgcacaa gcttttaatg taagcacagg tgctttgaga cttgcagcaa gtagaaactc
     3961 aaataaatac gagtggttaa aagtagataa tgaaaaaggc ggcaggggtg gcaaaaaact
     4021 actatttaaa ataagcaaag ataagctttt aaccgccttt aaccaagaat taatcactaa
     4081 aaatacttta atttatgatg a
//
LOCUS       DARGBD010000121         4068 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.121, whole genome shotgun sequence.
ACCESSION   DARGBD010000121 DARGBD010000000
VERSION     DARGBD010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4068
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.121"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..548
                     /locus_tag="SFZ04_001668"
     CDS             <1..548
                     /locus_tag="SFZ04_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEG8065903.1"
                     /translation="LALSLIFHYDLEDKAKDFLAKIPKIKLKNLKKIYSHSNLQTSSL
                     GRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYDKNLDFSYKLFVEKGQVNFKNLILGAL
                     QDEKTKAITGMFNALANFIIDFSKDYDLKVLLSGGVFQNKTLLEILKAKNFDFFIPLK
                     YPCNDSSIALGQMVHFLNLEK"
     gene            626..1369
                     /gene="hypB"
                     /locus_tag="SFZ04_001669"
     CDS             626..1369
                     /gene="hypB"
                     /locus_tag="SFZ04_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEG8065904.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKEGKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSITEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            1369..1650
                     /locus_tag="SFZ04_001670"
     CDS             1369..1650
                     /locus_tag="SFZ04_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEG8065905.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            1634..2725
                     /gene="hypD"
                     /locus_tag="SFZ04_001671"
     CDS             1634..2725
                     /gene="hypD"
                     /locus_tag="SFZ04_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEG8065906.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            2722..3696
                     /gene="hypE"
                     /locus_tag="SFZ04_001672"
     CDS             2722..3696
                     /gene="hypE"
                     /locus_tag="SFZ04_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEG8065907.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEANVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDGLKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            3696..4040
                     /gene="hypA"
                     /locus_tag="SFZ04_001673"
     CDS             3696..4040
                     /gene="hypA"
                     /locus_tag="SFZ04_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEG8065908.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKIIQ
                     GEDLHLMRLVMK"
BASE COUNT         1439 a          498 c          827 g         1304 t
ORIGIN      
        1 atttagcctt aagtcttatt tttcattatg atttagaaga taaggctaag gattttttag
       61 caaaaattcc aaaaattaaa cttaaaaatc ttaaaaaaat ttattctcat tctaacttac
      121 aaacaagttc tttaggacgc attatcgatg cttttggaag tattgttttt aacttagaaa
      181 aaagttctta tgaagctcaa gttggcttaa tgtgtgaagc tttttatgat aaaaatcttg
      241 atttttctta taagcttttt gtagaaaaag ggcaggttaa ttttaaaaat ttaatcctag
      301 gggctttgca agatgaaaaa actaaggcga ttacaggtat gtttaatgcc ttggcaaatt
      361 ttatcataga ttttagcaaa gattatgatt taaaagtgct tttaagcgga ggggtttttc
      421 aaaacaaaac cttgcttgaa attttaaaag ctaaaaattt tgattttttt atacctttaa
      481 agtacccttg taatgatagc tccatagcct taggacaaat ggtgcatttt ttaaatttag
      541 aaaaataaag caaatattct aaaaactcat aattttttaa tgcttttaag gttaaaatga
      601 aacaaaaaat atataaggaa agaaaatgtg taaagattgc ggctgctcta taaattcaag
      661 ccatacgcat ggtcatcatc acgaccacca tcatgaaaat ccaagcttaa aagagggtaa
      721 aaccatagaa gtgatttcta aaattttaag caaaaatgat gaagaagcta agcacaatag
      781 agcgcatttt aatgaagcta acacgctttg tatcaattta atgagttctc caggtagtgg
      841 aaaaaccacg cttttagaaa gcacgattaa ggctttgaaa aatgaactta aaattgctgt
      901 gattgaaggg gatttagaaa ccaataatga tgctctaagg gtaaaaaatg ccggagcttt
      961 ggcgtatcaa atcactacag gacaaagctg tcatttggac gcttttatgg tgcatgaggc
     1021 tttgcatcat ttagccattg atgatgtgga tttgcttttt atagaaaatg ttggaaattt
     1081 ggtttgtcct gcaagttatg atttaggaga gcatttaaat gtggttttgc tttcgataac
     1141 tgaaggaagt gataaaccgc aaaaatatcc tgtgatgttt aaaaaggctg atatagtttt
     1201 aatcacaaag gcagatttag ctcatcattt tgatttcgat attaaagagg cgactaggtt
     1261 gattaaagaa ttaaatccta gagcagatat tatcaccctt gatgcaaaaa atggcaccaa
     1321 tatggagctt tggtataagg tgcttaaact taaaaaggag cttttttaat gtgtttgtct
     1381 ataccttctg aaattttaga aatcgatgag ttaaacaatg ctttagtaca aactttaggc
     1441 gtgaaaagaa aagttaattt ggatttgatt gatgaacctt taaaacaagg cgattatgta
     1501 ttaatccatg taggcgttgc tatggaaaaa atcgacaaag aagctgcact agaaagcatt
     1561 aaaacctatc aagaaatagt agaaaaaatg aatagtggag agataaaaag tgatgaagga
     1621 gatttgggtt taaatgaatt tcatcgatga atttagagat aaagaaagca ttttagcttt
     1681 aaaaaaactc atagaacaag aacttaaaaa tcctattaat atcatggaaa tttgcggtgg
     1741 gcatacgcat agtatcatga aatatgcttt gccttctatt ttgccaaagg aaattaactt
     1801 tatccatggg ccaggatgtc ctgtttgtgt tatgccaaga gttcgcattg atacagctat
     1861 caagttagcc tccatgaaag atacgatttt ttgtacttta ggggatcttt taagggtgcc
     1921 tggaagtgaa atttctttac tggatttaag agctaaaggg gctgatgtta gagcgcttta
     1981 ttctccgctt gaggttttgg aaattgctaa gcaaaattta aacaaaaata tcatcttttt
     2041 tgctataggt tttgaaacta ctacgcctat gagtgcttta cttcttcaaa aggttataga
     2101 agaaaaaata aataatgtct tttttcatat caatcatatc acagttccag cacctgtaga
     2161 agcgatcatg aatgatgaaa atgtaaaaat caatgctttt ttaggtcctt ctcatgtgag
     2221 tgtgataaca ggttatggta tttatgagcc tttagcagca aaatttaaaa cccctatagc
     2281 ggtgagtggt tttgagccag ttgatatttt agaaagtgtg ttaaatatca taaaacaaag
     2341 caatgaaggc acttttaaag tgtataatca atacaaaaga gccgtaagca aagaaggcaa
     2401 tgttaaagca caaaatttag taaaaaaata ctttagggtg tgtgattttg aattccgtgg
     2461 cttaggactt attaaagatg gaggcttgga gttaaaagaa gaatttagcg cttacgatgc
     2521 gagtaaaaaa tttgattgta cggttcaaag taaaaatgaa agcaaagcct gtatttgtgg
     2581 gcaaatttta agaggtttgg ccaagcctta tgattgtaaa gtttttggca aggcttgtac
     2641 gccaagaagt cctataggaa gttgtatggt ttctggcgag ggtgcttgtg cggcgtatta
     2701 taaatactca aaggtgaatg catgaaaaat atttccttag cccacggagg cggtggagaa
     2761 gagatgaatg agcttttaac taagcttttt aagatctttg ataatgaaat tttaaacgca
     2821 aataatgatg cagcgatttt gggaaatttg gctttaagca cggattcttt tgttttaagt
     2881 ccgatttttt tagatgaaga ggttaatata ggtaaacttt gtgtttgtgg ttctattaat
     2941 gatgttttga tggtgggtgc taagccaaaa tatctaagct tagggcttat cttagaagaa
     3001 ggttttgagc tagaaaaatt agaacgtatt ttaaaaagca ttaaagaaga atgtgaaaaa
     3061 tgtggagtta tgttagtttg tggcgatact aaagttgttc ctaagggtaa agcagatgaa
     3121 atttatatca acactacagc cttaggtgaa attatttcta aaaaagaaag taaaaatatc
     3181 aaagcagggc ttagcatact tctttcaggt gatataggaa ggcatggagc tagtgtttta
     3241 atcaaaagaa atgagttaga agctaatgtt aaaagtgatt gtaaggcttt agataaagag
     3301 gttttagagc ttttagaaaa agatataaag gttgtagcaa tgagagatgc tactcgtggg
     3361 ggacttagtg cggttttaaa tgagtgggca aagcaaagtg gaaatgatct tttgatcttt
     3421 gaagaaaaaa tcatcgttca agatgaggtt ttaggacttt gcgagctttt tggttatgaa
     3481 gcctatgagc ttgcaaatga aggcactttt atactttgtg tggaaaaaga agatgggtta
     3541 aaagccttgg aaattctaaa aaaatacaat gtaaatgcga gtattatagg agaagtttta
     3601 gaagagaaaa aagcacgcgt gatcttacaa aacgcttatg gagcaaaacg ctttttagaa
     3661 agtcctaaag gcgaactttt accaagaatt tgctaatgca cgaattaagt atagtagaat
     3721 ctttaatcga actttgcgaa gaaaatgcct taaacaataa ggcttgtaat gtgcaagaaa
     3781 tttatgtaaa aatcgggcgt ttaagtggta tagaagtgga tctttttaag cgttgttttg
     3841 aaacttttaa agaaaactca aatatttgca aaaatgctaa actttttata gagcttgctc
     3901 cgcttgaaat tttatgctta aaatgcgatc aaacaagtat tttagaagaa aatgttttta
     3961 agtgtcctaa atgtcaaagt atagaatata aaatcataca aggtgaggac ttacatctta
     4021 tgcgacttgt gatgaaataa tatatttggc gtttttgtta caatagta
//
LOCUS       DARGBD010000122         3967 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.122, whole genome shotgun sequence.
ACCESSION   DARGBD010000122 DARGBD010000000
VERSION     DARGBD010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3967
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.122"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..477
                     /locus_tag="SFZ04_001674"
     CDS             <1..477
                     /locus_tag="SFZ04_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Replicative helicase"
                     /protein_id="HEG8065909.1"
                     /translation="SAENEFMGGVNFLNATDNLFKIQTSNNDGEILNIELNTKKARNF
                     LPYNLKVDIDLNTLDLKIERAINENDTNFLTKAKEIIEQKGEILQGELLELLEKSKTD
                     THAIKKLESGKGLYFNIIEKSRATGGKALKYYVPLKENKTIINGIEINVEQTLFSE"
     gene            complement(732..938)
                     /locus_tag="SFZ04_001675"
     CDS             complement(732..938)
                     /locus_tag="SFZ04_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEG8065910.1"
                     /translation="MTNNDFESILKKCNLSKKEFATLCDLPYPTLMNWVKADKTPNWV
                     KSWLENYIKAQKYNKIKDLIKDDL"
     gene            complement(1189..1416)
                     /locus_tag="SFZ04_001676"
     CDS             complement(1189..1416)
                     /locus_tag="SFZ04_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065911.1"
                     /translation="MTRLEFDEKIKQLGLTRKIFADIAKVSYSGISTNWKDDKEIPSW
                     VEPFLYYYEKGLALDELLKILEKYKNKEKLE"
     gene            1555..1923
                     /locus_tag="SFZ04_001677"
     CDS             1555..1923
                     /locus_tag="SFZ04_001677"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065912.1"
                     /translation="MEKVDYCRMSCLDGKINAFKYLLDLFLSDLENENDVKTCNMFEN
                     DTSIEYVKDMLMMMLDKIKEIVIDQDNCHHNIDMYASVYHEIIKDELGKEFTPKELKE
                     LHKKQEERLLKELLEGSKKK"
     gene            2365..2595
                     /locus_tag="SFZ04_001678"
     CDS             2365..2595
                     /locus_tag="SFZ04_001678"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065913.1"
                     /translation="MQTITIKAKEQEINKLLDILKELNISYELESNNYKKALNDYESG
                     KSWQETKQELHKALNDYESGKAKLTPLGSEWL"
     gene            2595..2882
                     /locus_tag="SFZ04_001679"
     CDS             2595..2882
                     /locus_tag="SFZ04_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002926587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEG8065914.1"
                     /translation="MQILESDLFTNELNIILSFIVRKESIKVKNTFKNDLYKALKKLD
                     FMPYKFRKSLAFDDENVRDFIFKGYVIPYKIDKEKDLIIILGIYKENLPNF"
     gene            3418..3834
                     /locus_tag="SFZ04_001680"
     CDS             3418..3834
                     /locus_tag="SFZ04_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065915.1"
                     /translation="MKKLGLVLAALVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVGPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SNGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK"
BASE COUNT         1646 a          446 c          551 g         1324 t
ORIGIN      
        1 agtgctgaaa atgagttcat gggtggggtt aatttcttaa atgcgaccga taaccttttt
       61 aaaatacaaa caagtaataa cgatggagaa attttaaata tagaattaaa tacaaaaaag
      121 gcaagaaatt ttttacctta taatttaaag gtagatatag acttaaatac gcttgattta
      181 aaaatagaaa gagcaataaa tgaaaacgat acaaactttc ttacaaaagc taaagaaatc
      241 atagaacaaa aaggcgagat tttgcaaggg gagttattag agcttttaga aaaatcaaaa
      301 accgatacac atgccattaa aaagctagaa agtggaaaag ggttatattt taatataata
      361 gaaaaatcaa gagcaacggg tggaaaagct ttaaaatatt atgtgccttt aaaagagaat
      421 aaaaccatca ttaacggcat agaaataaat gtcgagcaaa ctttatttag cgaataagta
      481 aaaagctatg tgagtttaat tcatatagct ttttacttaa ttattatctt atagccatag
      541 cttaataaaa acactcctaa aatcaaaaaa gtatttttac cgataaaaca ccttagacaa
      601 aaaataaaaa cgcttaaaat cgcttatttt aatttagtat tttttataaa aagtggttga
      661 agggggtgtc ttcaaatttg aagacaccta gcaattagca ctgctcaatt ttgagcacac
      721 atcatcaaaa cttacaaatc atcttttatt aagtctttaa tcttattgta tttttgagct
      781 ttgatatagt tttcaagcca agatttaacc cagttaggcg ttttatcggc tttaacccaa
      841 ttcatcaaag taggataggg caagtcgcaa agagtagcaa actctttttt agataggttg
      901 cattttttta aaatgctttc aaaatcgtta ttagtcataa ttaagccttt atattaattt
      961 aatagctata ttgtagcata tagcattaaa ataatacttt aatacttgac ttatagatta
     1021 aaacaatata taattgtgat ttttaattat taaatcaata caaaaggata aaaaaaatgg
     1081 aaaagtaaga ttttttgttt ttccatagat ggaaaaacat agtatggaaa aagaaaagat
     1141 tttaaaaaaa tgtaagaact ttaagagtga aaataaactt ttaaaggctt attctaactt
     1201 ctctttgttt ttgtattttt ctagtatttt taataactca tctaaggcta aacctttttc
     1261 ataataatat aaaaaaggct ccacccacga tggaatttct ttgtcatctt tccaatttgt
     1321 agaaattccg ctataactta cttttgctat atctgcaaat atttttcttg ttaatcctaa
     1381 ttgcttaatt ttttcatcaa attctaatct tgtcatttta taaccttttt agttaattat
     1441 aaaataatta taacattttt ttattaaata acataaaaat atattgactt ttttagtaaa
     1501 aaaatataaa attacacttt atttttagtt aaatacataa aaaaaggaga aaaaatggaa
     1561 aaggtagatt attgtagaat gagttgccta gatggcaaaa taaacgcttt taaatatctt
     1621 ttagatttat ttttaagtga tttggaaaac gaaaacgatg ttaaaacttg taatatgttt
     1681 gagaatgata caagtataga gtatgtaaaa gatatgctta tgatgatgct tgataagata
     1741 aaagaaattg ttatcgacca agataattgt catcacaata tagatatgta cgcaagtgtt
     1801 tatcatgaaa ttataaaaga tgagttaggt aaagaattta cccctaaaga gcttaaagaa
     1861 ctgcataaga aacaagaaga gagattatta aaagaattac ttgaagggag taaaaagaaa
     1921 taaaacaagg tagtaagttt aacttgctac ccttaccttt aagggcaaaa atctattttt
     1981 aatcttctaa attcaaatac aaataaacca cgcaataaaa tccttataaa aagtatataa
     2041 aaaagatgat gtaaataaaa tttactccat ataaaacaaa ctttgaaata tacaaaaatt
     2101 aatttaatat ttaagataat tttaagaaag gttgaaacga taaaagaagc taattttagg
     2161 gcttttgtat aaaacaccac ttaaaaagat gagctaatta gtgggggggg gctaatgggt
     2221 agattaaacc tagggcttaa aagctaccta actttaactt atatagattt gtcaaagtat
     2281 tttaattaaa tagcttttct tttaaaggct tataaaataa aataagttat aataactaaa
     2341 ctttgaatca gtaaaggaaa agctatgcaa accataacaa taaaagcaaa agaacaagaa
     2401 ataaacaagc ttttagatat tttaaaagag ttaaatatca gttatgaact agaaagcaac
     2461 aactataaaa aggctttaaa tgattatgaa agcggtaaaa gttggcaaga aacaaaacaa
     2521 gaactacata aggctttaaa tgattatgaa agcggtaagg ctaaattaac gccattaggc
     2581 agtgagtggc tgtaatgcaa atcctagaaa gcgatttatt tacaaatgaa ttaaatatta
     2641 ttttatcctt tattgtgaga aaggaaagta taaaagttaa aaacactttt aaaaatgatt
     2701 tatacaaggc tttaaaaaag cttgatttta tgccttataa gtttagaaag tctttagcct
     2761 ttgatgatga gaatgtaaga gattttatat ttaaaggtta tgtaatacct tacaaaatag
     2821 acaaagaaaa agatttaatt attatcttag gtatttataa agaaaaccta ccaaactttt
     2881 aaaaaattac tttttaagct tttgaaaaaa tgagtttaag tttcaagcta aaaaagctta
     2941 aaaaaatgag aaaacttaaa taaaaaaagc gtgaaacatt ctatttaagc taaataaact
     3001 taaatggctt taaaaatacc ttaatataat ttttaataac cctataaaat agggctttaa
     3061 tgatgatata aataaataaa gcttgaaaag tgtagttttc aaatttgatt taagttttca
     3121 aaggatattc tttaaatttc tatacaaata aaaaggtaac ttaataaagg taactattat
     3181 aaaaatacta taaaataggt atttattttt agttatatat ttcaagtcct ttcatctgca
     3241 ccacttgctt ttatcatttt caaacaagag ttgatttctc ataaattttt atttcatttt
     3301 aaaatttctt atgattgtta gataaaatgc aaatttaatt tagataaatt taaaaattat
     3361 cttgcaaaag atttgaaaaa taattcaaat atacaaaatt caattcaagg agataaaatg
     3421 aaaaaattag gtttagtttt agcagctttg gttgctttga atgtgtcagc atttgcagat
     3481 ttgatagtta tcaataaaaa agatttagtt ccagtttcag caagcgaaat gcaaaacaaa
     3541 tatttccaag agagtataaa atcaacttta actgagccac tttttaaaaa ggcaactttt
     3601 tatgaagcag atattgttgc aaaagttggt ccaagaactt ataattcaac tcaagctata
     3661 atacaaaaag aatattcaga taaaagcaat tatgtttatt ataaacaagt tcttatatta
     3721 actagtaatg gtaaaagagc tagattatct actctttctt gcgaaattgc aagttttgat
     3781 aagaaggggt atttatgtgg aggcacagct gatcataatt attctattaa gtaaatattg
     3841 caaataaaaa tccgccttga gttttcactc ttggcggaaa tccaccatta gaacatacta
     3901 tgaaaaaaca tagtaagtat aaagtatatc taaattttaa gctttttaag ttaaaaattt
     3961 ctagttt
//
LOCUS       DARGBD010000123         3880 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.123, whole genome shotgun sequence.
ACCESSION   DARGBD010000123 DARGBD010000000
VERSION     DARGBD010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3880
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.123"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1020)
                     /gene="selD"
                     /locus_tag="SFZ04_001681"
     CDS             complement(<1..1020)
                     /gene="selD"
                     /locus_tag="SFZ04_001681"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(970..972),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEG8065916.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKLLLCDPQTSGGLLISISEKDSLECLKKLEDENIQAKIIAKVVNKQE
                     NDIIIS"
     gene            complement(1030..1602)
                     /gene="yedF"
                     /locus_tag="SFZ04_001682"
     CDS             complement(1030..1602)
                     /gene="yedF"
                     /locus_tag="SFZ04_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG8065917.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPVVDENAQEFCIKVQKKNFDSSKVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(1713..3815)
                     /gene="ccaA"
                     /locus_tag="SFZ04_001683"
     CDS             complement(1713..3815)
                     /gene="ccaA"
                     /locus_tag="SFZ04_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HEG8065918.1"
                     /translation="MFKSLNIGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLD
                     FSDIATYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKA
                     ISEGKNGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVNKKRF"
BASE COUNT         1295 a          660 c          465 g         1460 t
ORIGIN      
        1 agaaatgata atatcatttt cttgcttatt tacaacctta gcaataattt tagcttgaat
       61 attttcatct tctagttttt ttaaacattc taaggaatct ttttcactta tagaaattaa
      121 aagtcctcct gaagtttgtg gatcacaaag taataatttt tcttcattta aatcaggggt
      181 aagttctttt ataaattcta aatttttata agctccagca ggaattaaac ccatattaaa
      241 atactctttt actccatcta aaaaaggaag ttcactttca aaaatttcaa aagaaatatt
      301 tttatttagc atttctttta aatgtcctaa aagtccaaaa cctgtaacat cactcatggc
      361 acttggatga aatttaagag caatttgact ggctttataa tttaactcca tcatgttttt
      421 aagcattata tctaaatgtt tttgatttaa catttgcgcc tttaaagctg tacttaaaat
      481 tcctgttcct aaaggcttgg ttaaaatgat acaatctccg attttagaag tattattagc
      541 aataaattta ctaggatgta cttttcctgt aacactaagt ccaaaaaaaa gctcggtgct
      601 ttctatagta tggccaccca caactaaagc attacattct ttaactttat catttgcacc
      661 ttctaaaagc tcttttaaga tgtttaaatc atgattgcaa gtatcaaaac ctactatatt
      721 taaggcatta attacctctg cacccatagc aaaaacatcg cttaaagcat ttgctgcagc
      781 aatagcacca aaatgataag cactatctac tataggagtg ataaaatcaa gcgtttgcac
      841 caaagctaaa tcgggactga tttgatatac gcttgcatct tcattatttc cgatatcact
      901 aagtaaagca ggagtttttt gcatgaaatt taaaattgtt ttaagaccac ccgggcttaa
      961 tttcgctgct cagcctgctg ctttaacaaa atgcgttaaa ttttgatttt tatattgcag
     1021 tgtttttcct tatagagtaa tgatttttgc tttaccaaaa agctcgttta aaatttcata
     1081 agcattgcct atatttccta ttttaagttc tttgctttta ttaaaaaatt ctagacaagc
     1141 tccacaactt atgatctcaa tacctaaatt ttcaagttct ttcatagcta aatgtgcttt
     1201 atgattttca tcaacattga ttaaaacact ttcatttacg caaagaattt tacttggagc
     1261 atgatctaaa ttttttaagg tacttaaaaa tcctacaagt aaattttgtc ccaattcacc
     1321 ctcacccact ttgtcggttt ttaaaaataa aacattataa tcgtgaatat ttactttact
     1381 agaatcaaaa ttcttttttt gtactttgat gcaaaactct tgtgcatttt catctacaac
     1441 agggtttaaa tttaaagagt taagaaattt tacaacatta ttttttgaaa taatagaatt
     1501 taaaacaatt tctaaaattt cattttcttg aagtttttca agagcgtttt ttgtttcaac
     1561 tataggctga ggacaagata gattgcgaca atcaattttc attatttttc cttgatatta
     1621 gctttgaaaa ataatattat tttattactt gttttgtgtt taaaaatttt aaataatata
     1681 gaaaaaattt aaaagctcaa aaatgagctt ttttaaaatc tttttttatt cacatcttca
     1741 agaattgccg cagcaatttg attgacttca tttgttatat tattggtgac atttgcaact
     1801 tcgacatttt ccttagttac agtttcaagt tgtgctatag catcgttaat ctgtgtgatt
     1861 cctgctgttt gttcttttac agattctgct acttcattta cgctttgaac aagtatatta
     1921 atatttgcct cgatttcaga taaggatttt cctgttcttt ccgcaagctg tcttacctca
     1981 tctgcaacaa ctgcaaaacc acgcccatgt tctccagcac gtgcagcttc aatagctgca
     2041 tttaaagcaa gaagattcgt ttgctcagcg atatctttaa tcacattgac aatatttttt
     2101 atatcatcag cttgtgaagc aacctcaact gtttttccac ttacattttg catagaagaa
     2161 ttaatctcct ccacagctgc agccgattgt tctaaagaac tcgcttgtgc attagagcca
     2221 tcagcaagtt tttgcataga attttttaac tcttctgact gattggctaa atctttagca
     2281 aaatttgaag aagccaaaag catcttttta atttctttgc ctaaaatatt agttgtaatc
     2341 tcaacttcac ctttagcatt aaatacttct gtactaaaat caagagcctt ataactatca
     2401 aaaactctat taatttcatt catattagaa ccaattttac tttgtaaaac atcaagcatc
     2461 ctattaagaa catttttaag ttctactaat tgaggattta taggattttt agtaattctt
     2521 gcagttaaat tacccttttc gatttctcta gcagtttgca ccgattcatc tacagcattt
     2581 tgatcttgtt ctaaagatat ttgaatcttt tcaatatttt catttatgat tcttcccatt
     2641 gctcctagct catcattagc acgaatttca atagccttag gttcaatttt ttcatgattt
     2701 aaaaaacgga aaaatgattc taaagaacta agaatcacag gcaatctaga tgcgacaatt
     2761 tttcttacgc aataataaac cactcctaaa acaacaaaaa taaaaataaa agatgcacca
     2821 agaataatta attgtaattt ttttaagggt ttaaatactg aatatttagg agcagttacc
     2881 aaaactgccc aagaactatc ttgcacttta aaactattaa tcgcagcata agaatcatca
     2941 ccatcagaag ctatatagtt aaaaactcca ttttttcctt cacttatggc cttataagtt
     3001 tcttgtgcac ctttattagg attgatatct tttaaatttt ttaaaactag atttttattt
     3061 ggatgtatcg ccataaaacc atctgaattt aaaagaactc ttaattcacc atcatatttt
     3121 tgacctttag ggtctaaaag ataagtagca atatctgaaa aatctaaagt catgcctatg
     3181 acacctacaa cttgattttt tcgatcaaaa ataggcatag caacatttac agcatcaaaa
     3241 tcttgacctt ctaaattcat cttaatagga cggcctatat atactttatt ttccccatat
     3301 tttgcttttt ttaatatatc ttgcacaact tgcagattag ctatttcatc actagcttgt
     3361 attgctttta ttccgccttt attatccttt tcttcatcag cgtaaagcat aacaaatttt
     3421 ccactttgag tattaaaaaa tttactctct tctttaaagt attctggcgg atcaataaga
     3481 tataaataag taaaattaga ataagcacta ttatcaaaag tattggttat aatatttgtt
     3541 atattgtcta tatctaaatc ttctttagag gttgatctaa acatttctgt taaagtacct
     3601 gaaatacttt tatttaaagc gatcatttcc ccaaaaattc cttgagtttg agtagcatat
     3661 tctttcgtga tagaagcaag aatatcttct gtatttttgg taatattttg acttacttgt
     3721 tttgtgatta atgaaattaa aataacaagt ccaataacaa caacagctgc cacagaaaaa
     3781 ataagtttta aacctatatt taaagattta aacatcttat aactcctaaa aaataaaaaa
     3841 tttagattct aattttaaca tatttttaaa aaaataatat
//
LOCUS       DARGBD010000124         3678 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.124, whole genome shotgun sequence.
ACCESSION   DARGBD010000124 DARGBD010000000
VERSION     DARGBD010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3678
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.124"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..743)
                     /locus_tag="SFZ04_001684"
     CDS             complement(<1..743)
                     /locus_tag="SFZ04_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEG8065919.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMCEV"
     gene            complement(734..1978)
                     /gene="cbrR"
                     /locus_tag="SFZ04_001685"
     CDS             complement(734..1978)
                     /gene="cbrR"
                     /locus_tag="SFZ04_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HEG8065920.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDPVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(2084..3607)
                     /locus_tag="SFZ04_001686"
     CDS             complement(2084..3607)
                     /locus_tag="SFZ04_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEG8065921.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARAQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLAHLKNLSSGEL
                     NRLRLAFIATECNILNTGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKN"
BASE COUNT         1225 a          683 c          371 g         1399 t
ORIGIN      
        1 aatacttcac acattttgtt tgctacaaat tgagttaaca aaggttcatt tcttttaccg
       61 cgataaggct ctggagtaag atatggagca tcagtttcaa gtagtagtct atcttttgga
      121 attttaggta aaatttcaac taatttctta gcatttttaa aagttaaaac tcccccaata
      181 ccaaaataaa atccatcttc aaaaagagtt agcaaatgtt cgcttgcatt aaagcagtgt
      241 aaaactcctc ctacaagatc cttagaatac ccatgtaaaa tctcataggt atcatgattt
      301 gcttctcttg agtgaatgat aacaggtttt ttaaattcaa tagcaagttc aagctgtgcg
      361 ataaaaatct ttttttgatt ttctttttct ttttgaattt cttcagcaag atcactttta
      421 aaacgaaaat aatcaagccc acattcacct acagctacac atttttcatc gcataaatac
      481 tgccttaaaa ttttctcatc ataattatca atttcataag gatgcacccc tgctgcaaaa
      541 aaaatatttt tatatttatg agcaattgta gctgcatagg gcaaatcttt tatatcagca
      601 ccaggtatga tgattttctc tataccattt ttaaaagcac gatttaaagt ttcatctaaa
      661 tcatctttaa atgcttcact gtctagatgg caatgtgtat caacaatcct taaaccatct
      721 tgaaaatcaa gatttaagaa catacttcaa ctctatcctt gccattatct tttgcttgag
      781 acaatatttt acttgcttta tcaaccaaag aatcaatctt atctccactt tttccaaaaa
      841 ccacgcctat agaagctgta aaaaagactt catctaaatt aaccaaaaca ccagcctttt
      901 ttatatttac tcgtatacga gaaaagattt taatcgctct ttcttgagat atatttttaa
      961 gtaaaataca aattttttct gcactatatc tacctacaag atctcttcct ttagtttcat
     1021 taactatttc attggcgcag attttaatta cttcatcacc aacttcacgg ccgtattcat
     1081 cgttaatcat ttgaagatta tctatatcta aaaaagcaaa agcaaattcc tcgtcttttg
     1141 ttgctatttc gttaaaataa tcatctattc catcgattaa agcattataa tttttaaccc
     1201 cagatacagg atctaaaaca ttataagtgc ttaaaaattt tttatcatcc atgtaagata
     1261 aacaacgatc taagcgacaa ttaaaacttt ccttgcttaa aggcttaaac aaatactcat
     1321 taactccatt tttaaaagaa ttcgcttcaa atgaatcatt atgatccccc aaaagaatca
     1381 cacctaattc atcatcacta aaacgttctc ttacttgagt caaaagctca aaaccgctaa
     1441 ttactggcat attgacatct gctataataa gcttaacatc attattatca tttaaataac
     1501 tcattgcttc ttcaccatga gccgcagcta aaacattaaa ttgtctttga gtaagtattt
     1561 ttttaatttc attacgttca ggtagcttgc tcatagctac aatcacttta gtttttgcat
     1621 attgattaag ttttacaata gaactaataa tctcatcaat gcaagtttca ctttctttaa
     1681 aaatataatc taatatatct ttatccataa atttttcttt agtagcctta tcaccactag
     1741 ccgtaagaac aatagcagga attttctttt ctataacata atccacaact tcaccatttg
     1801 gggcatctgg caagcataaa tccacaaaag ctaaaaaata atcattattc attaactcct
     1861 tagcttcagc aaaaccaaaa gcaatatcta cctcataatc taaagtcatt tgaatttttt
     1921 tagccaaaag tttgccgagc attttattgt catcaataat taaaattttc ttattcatag
     1981 tgtgtaaaat acctttatat ctaaaatttt ttattatatt tgtttcaaaa gaaaggaaat
     2041 ttttatagtt atatatttta acatagcaaa ataaaaaatc cgcttaattc ttaaataagg
     2101 tcttagcaaa ttcgatcgct tcatcactaa caagctctcc acttaccatc ctagcaagtt
     2161 ctttaattct ttcttcttga tcaagctttt ttaccttact ttcttcacca tttttttcaa
     2221 ctaaaaaatg attatgtgcc ttagaggaaa gttgaggcaa atgagaaata gcaaaaattt
     2281 gataaaactt agaaagttcc tctaaaacct tagctatact catagcctct tttccgctta
     2341 aatttgcatc aatttcatct aaaaataata tccctttgcc tgtatttaaa atattacatt
     2401 ctgtggctat aaaagcaagt cttaagcgat ttaattcacc cgaacttaaa ttttttaaat
     2461 gagctaaatt aatatctagc attatctcat ctttgcctaa aattgaaatt ttttcatttt
     2521 ctttaagcgt caaacttgca tctttcatat aaagatcttt aagataatta tttaaacatt
     2581 tttctaattt tttaaggttt ttctttcttg tttgagttaa aatttgtgct ttttcttcta
     2641 atttttgttt taattcttga aatttttttt caagttcttt tttttcaaaa cttaaatttt
     2701 cataatgctc tagctcatat tttttttgtt ttaaaacttc taaagcattt tctatgcttt
     2761 cataacgctt gataagatag gataaatttt caatgcgatc taaaagcgcc tccacatcaa
     2821 aatccaaatc ttccattttt tgattttcgc aaatcacacg caattcattc aaacattcac
     2881 taaaaaaact cgcatcaact tcgcttaaat ttaaagcttc aataacaact ttttcaagct
     2941 caaaaatacg ctctgcctta ctccaagctt cttctaattt atctttttta gaaagctttt
     3001 ttttaagtat taaaagctct tcatactcac ctattttagg attaatgctt gaaatttttt
     3061 caatttgcgc tctagctagt tcttttaatt cttctacttt tttttcttct tctaaaattg
     3121 cattaagctc attagaaatt tgactataag cattaaaatc ttttttaaaa tcttctaaaa
     3181 aggaaacaaa atttgtattt tcttgcatct ccaaggcatc taagagattt aaaaattttt
     3241 catttccaaa ttcgttattt tcctttgcgc ttaaatactt aataaaagtt ttacttaaat
     3301 tttgcaaact ttttttcgct atgctttgat tgttaataaa atattttgtg tttttttctt
     3361 ttaaaagctt aaaaacattc tcctcttcac tttctatacc aaaactttct aaatccaact
     3421 tatcatctac ttctatttcg acaattttag cctcactttc actcaaagaa aatgcggata
     3481 aaattccttt aaacaagacc gattttccag ctccacttag gcctgtaaaa acggtaagcc
     3541 ctttagaaat ttcaagctca gcctttttaa aaccaagatt ttctttcata aaaattctat
     3601 ttatcatcaa tttccccagt gtaatttttc ttttaaaatt tgaaaataat ccctattttt
     3661 tgggtgaatt aaagccac
//
LOCUS       DARGBD010000125         3561 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.125, whole genome shotgun sequence.
ACCESSION   DARGBD010000125 DARGBD010000000
VERSION     DARGBD010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3561
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.125"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..74)
                     /locus_tag="SFZ04_001687"
     CDS             complement(<1..74)
                     /locus_tag="SFZ04_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M15 family protein"
                     /protein_id="HEG8065922.1"
                     /translation="MKNNPYFKESEFKCKCGKCELPQNV"
     gene            complement(64..429)
                     /locus_tag="SFZ04_001688"
     CDS             complement(64..429)
                     /locus_tag="SFZ04_001688"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065923.1"
                     /translation="MTLDSVSKDLLKHFNAIGIANYEDVKQGGLYLMLESLTSINHHK
                     DSVNFSLIFSSHTFNKDKDSLIKKIDELRLKLFEFDTSKKLLSSIESGFISSSLFAYR
                     LKFNIEIFSKPEGEEENEK"
     gene            complement(426..779)
                     /locus_tag="SFZ04_001689"
     CDS             complement(426..779)
                     /locus_tag="SFZ04_001689"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065924.1"
                     /translation="MIALLSPPKMLALTLKELALMKRAQQNLANIDEITREVVAKAAK
                     DADDICKNKDIADFIWEDFAYIRIKIYLKIVLDDEDKILLDNALKRIENAPLIDKEGN
                     LSSLRLKIMQRKDRF"
     gene            complement(776..1045)
                     /locus_tag="SFZ04_001690"
     CDS             complement(776..1045)
                     /locus_tag="SFZ04_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065925.1"
                     /translation="MDNIVSANKLRNQNAILNPKENDDQKALFLKEKQEFEKEKALFL
                     KEKQEFEKEKALFLKEKQKTLEENEETIINESLKNKETKKGKQDK"
     gene            complement(1045..1932)
                     /locus_tag="SFZ04_001691"
     CDS             complement(1045..1932)
                     /locus_tag="SFZ04_001691"
                     /inference="COORDINATES: protein motif:HMM:NF021628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu-like prophage major head subunit gpT family
                     protein"
                     /protein_id="HEG8065926.1"
                     /translation="MAFTELSTAYMQAVNKGFSTIFNNALEGGNKDYEKFAMVTNANS
                     LVVEYQFLASLPKMREWIGDRQFSKLKGQGYTITKKDWESSIEVPRDVITYDNLGIIR
                     PQIEMLAYEVQNHYNDLIFTLLEQNQTCFDGKAFFANDHDIGGVSFSNLGDKKLSAAS
                     LMEARKNMRALTNESGRTLNINPALLVVPLSLEAKALEIVNSDLINGSSNVFKGVVEV
                     FTSPNLSDQDAWYLIDNTKPIKPLILQINKGAEFVAKDNPTDEAAFMRKTFQYGIDSE
                     DNAGYGLWQLAYKSSGKAE"
     gene            complement(1932..2972)
                     /locus_tag="SFZ04_001692"
     CDS             complement(1932..2972)
                     /locus_tag="SFZ04_001692"
                     /inference="COORDINATES: protein motif:HMM:NF021627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065927.1"
                     /translation="MRDLLLELNTKLTNEKVKISPIGIAKGLDGRVFKIDGEKLINNI
                     QKNGLDIALNLNHQGGEAYGWFDRNSLELREDGIYASLELTPKGKELVENKAFRYLSP
                     EYYVDDDKNVIHLDAMGLVNQPNLLNRALNKARSLINSTKNSKLSTPRSGTEAKKGKV
                     EHGLQVGAGSETPTRKDDFSSSAKLKKERNTMNEEELEELQKLAEQVEEQAENVEESV
                     QETEDCVGEGENPDSELETLRQENEELKAQIAELKAKLETALNKNEETEIELNKKRLD
                     SLLQNGLILPNRYQKALNMKGRVLEDYLDVCKKEANIVLGKKELNFTNKRKELNAYEA
                     KVFKQLGIKGGK"
     gene            3103..>3561
                     /locus_tag="SFZ04_001693"
     CDS             3103..>3561
                     /locus_tag="SFZ04_001693"
                     /inference="COORDINATES: protein motif:HMM:NF020401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HEG8065928.1"
                     /translation="MSKKELAKSLFIQGKSIKDICVLTGLSRQGIYCMKKDDFSKGID
                     WESLKLAALRDEKDLENKEAMFLNALIGEFERFLESASKNELDIDTLEALNKYAKTYW
                     TIKAPQKVDVKALNLQTCKKTIDSIIELASTNEAVCEWLSDNSDLIISKVL"
BASE COUNT         1075 a          613 c          482 g         1391 t
ORIGIN      
        1 acattttgag gcaattcaca tttgccgcat ttacatttaa attcgctttc tttaaaataa
       61 gggttatttt tcattttctt cttctccttc tggttttgaa aaaatttcta tattaaattt
      121 aagcctataa gcaaataaag aactgcttat aaaaccactt tcgatactgc ttaaaagctt
      181 tttgcttgta tcaaattcaa aaagttttag tcttaattca tctatttttt taatcaaaga
      241 atctttatct ttattaaaag tatgagaact aaaaatcaat gaaaaattca cactatcttt
      301 atgatgatta atacttgtta ggctttcaag cattagataa agtccgcctt gtttgacatc
      361 ttcgtaattt gctatgccta tcgcattaaa atgctttaat aaatctttgc taacactatc
      421 taaagtcaaa acctgtcctt tctttgcata attttaagtc ttaaagagct taaatttcct
      481 tctttatcaa tcaaaggtgc attttcaatt cgttttaaag cattatctag aaggatttta
      541 tcttcatcat ctaagacgat tttaagataa atttttatgc gaatgtatgc aaaatcctcc
      601 caaataaaat cagcaatatc tttatttttg caaatatcat ctgcatcttt tgctgcttta
      661 gctactactt ctcttgtaat ttcatcgata tttgctaagt tttgttgtgc tcttttcatc
      721 agtgctaact cttttaaagt aagagctagc attttaggag gagaaagcaa ggctatcatt
      781 tatcttgttt tccttttttt gtttctttgt tttttaaaga ctcatttatt atagtttctt
      841 cattttcttc taaagtcttt tgcttttcct ttaaaaacaa agctttttct ttttcaaact
      901 cttgcttttc ctttaaaaac aaagcttttt ctttttcaaa ctcttgcttt tcctttaaaa
      961 acaaagcttt ttgatcgtca ttttcttttg gatttaaaat tgcattttga tttctaagtt
     1021 tattagctga aactatattg tccattattc tgcctttccg cttgatttat aagctaattg
     1081 ccacagtcca taacctgcat tgtcttcgct atcgattcca tattggaaag tcttacgcat
     1141 aaaagcagct tcatcagtag gattatcttt agcaacaaac tcagctcctt tgttgatttg
     1201 caaaattaaa ggtttgattg gtttggtatt gtcaattaaa taccaagcgt cttgatcgct
     1261 taaatttgga cttgtaaata cttctacaac gcctttaaaa acattgcttg aaccattgat
     1321 taaatcgcta tttacaatct cgagtgcttt tgcttccaag cttaatggta caaccaaaag
     1381 agcaggattg atatttaaag tgcgtccgct ttcattagtc agtgcacgca tgttttttct
     1441 agcctccata agacttgcag cacttaattt tttatctcca agatttgaaa aactcacacc
     1501 accaatatcg tgatcatttg caaaaaatgc ttttccatca aagcaagttt gattttgctc
     1561 taaaagtgta aaaataagat cattataatg attttgtact tcgtaagcta acatttcaat
     1621 ttgtggtctt attattccta aattatcgta agttattaca tctcgtggta cttcaatgga
     1681 actttcccaa tcttttttag tgatagtata accttgaccc ttaagtttgc taaattgacg
     1741 atcgcctatc cattcacgca tttttggtaa agatgctaaa aattgatatt ctacaaccaa
     1801 agaatttgca ttggttacca ttgcaaattt ttcataatct ttatttccac cttcaagagc
     1861 attattaaaa atggttgaaa atcccttatt cactgcttgc atgtaagcag tgcttaattc
     1921 tgtaaaagcc attatttgcc tcctttgatt ccaagttgtt taaaaacttt tgcctcataa
     1981 gcattaagtt cttttctttt gtttgtaaaa ttaagttctt ttttacctaa aacaatattt
     2041 gcttcttttt tgcaaacatc aagataatct tctaaaaccc tgcctttcat attaagagct
     2101 ttttgatagc gatttggtaa aatgagtcca ttttgcaaaa gagaatcaag gcgtttttta
     2161 ttaagctcaa tctctgtttc ttcatttttg tttaaagcag tttcaagttt tgctttaagt
     2221 tctgcaattt gtgcttttaa ctcttcattt tcttgtctta aagtttctaa ctcgctgtct
     2281 ggattttcac cttcgcctac acaatcttct gtctcttgta cggattcttc tacattttca
     2341 gcttgttctt ctacttgctc ggctaatttt tgtaattctt ctaattcttc ttcgttcatt
     2401 gtattccttt ctttttttaa tttcgcggat gaactaaagt catccttgcg agtgggagtt
     2461 tcactccctg cacccacctg aagaccatgc tcgaccttgc cttttttagc ttctgtccca
     2521 cttcgtgggg tgcttaactt tgaatttttg gtgctattga ttaatgacct agctttattt
     2581 aaagccctgt ttaaaagatt gggctgattt acaagtccca tggcgtctaa atgaataaca
     2641 tttttatcat catccacata atattcaggg cttaaatatc taaaagcctt attttcaaca
     2701 agttctttcc ctttgggcgt taactcaaga cttgcataaa tgccatcttc tcttaactct
     2761 aatgaatttc tatcaaacca gccataagct tctcctcctt gatgattaag atttaacgct
     2821 atatcaagtc catttttttg tatattattg attaattttt ccccatctat cttaaatact
     2881 ctcccatcaa gtcctttggc tattccaata ggagaaattt ttactttttc atttgtgagt
     2941 tttgtattaa gctctaataa taaatcacgc atcaaaagcc tttatttttt cgcataatca
     3001 taagataaaa aatgctttta aaccacctat ttaaagtata tatagactga ttttaaaaaa
     3061 ataaaaaaat ataatttcaa gcaataattc taaaggaaaa atatgagcaa aaaagaactt
     3121 gctaaaagtc ttttcataca aggaaaaagt atcaaagata tatgtgtttt aacaggtctt
     3181 agcagacagg gtatatactg tatgaaaaaa gatgatttta gcaagggtat tgattgggag
     3241 agtttaaaat tagccgcttt aagagatgaa aaagatttag aaaataaaga agctatgttt
     3301 ttaaacgcat tgattggtga gtttgagagg tttttagaaa gcgctagtaa aaatgagctt
     3361 gatattgata ctttagaagc tttaaataaa tacgctaaaa cttattggac tattaaagct
     3421 ccacaaaaag tagatgttaa ggctttaaat ttacaaactt gtaaaaaaac tattgattct
     3481 attattgagt tagcaagcac caatgaagca gtttgtgaat ggcttagtga taatagtgat
     3541 ttaattattt caaaggtttt a
//
LOCUS       DARGBD010000126         3534 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.126, whole genome shotgun sequence.
ACCESSION   DARGBD010000126 DARGBD010000000
VERSION     DARGBD010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3534
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.126"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..741
                     /locus_tag="SFZ04_001694"
     CDS             <1..741
                     /locus_tag="SFZ04_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEG8065929.1"
                     /translation="QIKNNLNAQKITAIVSSFDPLHRAHERMFRWTIDKADLVVIFLV
                     ESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFPLKNINIFHAHLNPGLESIIAKSLG
                     CTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYGIEVIVLPEFVFCDQCRMIVSTRSC
                     PHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEVSSVILTSLFPNRLKNMQKIYNELF
                     PTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            746..1246
                     /locus_tag="SFZ04_001695"
     CDS             746..1246
                     /locus_tag="SFZ04_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEG8065930.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            1325..1588
                     /gene="rpsT"
                     /locus_tag="SFZ04_001696"
     CDS             1325..1588
                     /gene="rpsT"
                     /locus_tag="SFZ04_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEG8065931.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            1607..2674
                     /gene="prfA"
                     /locus_tag="SFZ04_001697"
     CDS             1607..2674
                     /gene="prfA"
                     /locus_tag="SFZ04_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEG8065932.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(2688..3431)
                     /locus_tag="SFZ04_001698"
     CDS             complement(2688..3431)
                     /locus_tag="SFZ04_001698"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HEG8065933.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDTIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNVNGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKANPNNIEIMFLEDESKAAS
                     VILRKRLRYRVDASFLERDERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVAHVGASGNRHKH"
BASE COUNT         1260 a          548 c          543 g         1183 t
ORIGIN      
        1 caaatcaaaa acaatcttaa tgcacaaaaa attactgcta tagtttcaag ttttgatcct
       61 ttgcatcgtg cccatgaaag aatgtttcgt tggactattg ataaagcaga tttagttgta
      121 atttttcttg tagaatcttt tgatgtaaat gggtttgaat tcgaacttaa agaagcatat
      181 ttgaaaaaat ttattcaaaa ctatcttcca ccggatagaa ttttcatttt tccattaaaa
      241 aatattaata tttttcacgc tcatttaaat cctggcttag aaagtattat cgcaaaaagt
      301 ctaggttgta ccaaactagt agtaggacaa aatcatacag gacttggaat gttttatgac
      361 gataaccaac caaaaaccat acttgatgat ttttccaagg actatggcat agaagtgatc
      421 gttttgcctg aatttgtatt ttgcgatcaa tgtcgcatga ttgttagcac aagatcttgc
      481 cctcatggtt gtcatcacca tttgcactat aattctcagt ctttaaaaga tttactaaga
      541 gcgggtatca ttcctccagc aattttcatg cgcaaggaag tatctagtgt tattttaact
      601 tctctttttc caaatagatt aaaaaatatg caaaaaattt ataatgagct ttttccaact
      661 gatggaattt tagaatacaa aaatgatgaa gaattttatc aaaaactttt agaaattcat
      721 caaatgtctt atatggtgta ataaaatgca aaaattattt ttaacttttt tttattcagg
      781 ttctgtaaaa aaggcaagtg ggacttttgg tactatcgct gctttaatac ctgctttttt
      841 tatacttaaa tatctcggga ttaatacttt gtttttacta agcattttaa tttttgttgc
      901 aagtattcgt gttatagatg attatgaaaa aaaaacagga attcacgatg acaaacacat
      961 agttatcgat gaggttgctg gagtttttct tgcttgtgct attgcagcaa gtgttgaaaa
     1021 ctcgatagtc aattttattt tggcttttgt tttattcaga ctctttgaca ttacaaaacc
     1081 ttctattatt ggtaagatag ataaaaaagt caaaggcgga ctaggtgtaa tgcttgatga
     1141 tatgttagca ggattgtttg ctggactttt aagtgcggta atttatggat ttttacttaa
     1201 atttaattta gttttttggg atataaattt aaaagactta ttttgaaatt ttgcttaaat
     1261 taattaaatt ttaaatttta ttcttatata atttagtctt taatttcaaa aaaggaaaat
     1321 ataaatggca aaccataaat ctgctgaaaa aagagcaaga caaactatta aaaaaacaga
     1381 aagaaataga ttctatagaa caagacttaa aaatataact aaagccgtaa gagaagctgc
     1441 agcaaatgga gataaaaatg ctgctaatga agctttaaaa gtagctaata aaagcattca
     1501 tgctatggta agtcgcggtt tcattaaaaa acaaactgct tctcgccgtg taagccgctt
     1561 agccctttta gtaaataaaa tcgcataatt ttctatatag tttttaatgt tagctagcaa
     1621 actagatcct tttttaaaac gctttgaaga gttaaattct cttcttagca gttctgatat
     1681 aatcaacgat atcagtaaaa tgactacact ctctaaagaa caaaaaaatt tagaacctat
     1741 cgttttaaaa gctaaagagt atttaaaaac tttagacaat atagaagaaa ataaagcttt
     1801 gctaaacgat ccagaacttg gggaacttgc gaaagaagaa ctaaaaactt tagaagaatt
     1861 aaaaccaaag cttgaagaag agattaaaat tttacttctt cctaaggatc ccaatgatga
     1921 aagaaatatt tttcttgaaa ttcgtgcagg cgcaggtggc gatgaggcat ctttatttgt
     1981 aggagatctt gtaaaagctt atgcaagata tgctgaaaat cgtggctata aacttgagat
     2041 tgtaagttct agtgaaggaa gtgtaggtgg atttaaagaa atcatcatgc ttgttaaagg
     2101 aacaggagct tattcaagac ttaaatatga aggtggaacg caccgtgttc aaagagttcc
     2161 tcaaacagaa tcccaaggac gcgtgcatac ttctgctatc accgtggcag taatgccaga
     2221 agttgatgat atagaaatcg aaatcaatcc aaacgatctt aaagttgatg ttatgcgatc
     2281 ttcaggacat ggtggacaaa gtgtaaatac tactgattca gctgttcgta tcactcatat
     2341 ccctacaggt atagttgtag tcaatcaaga tggaaaaagc caacacaaaa ataaagaaag
     2401 tgcgatgaaa gtcctaaaag caaggcttta tgaaatgcaa gagagtgaaa gactagcaaa
     2461 agaaagtgaa gcaagaaaat cacaagtagg aagcggagat agaagcgaac gcattcgcac
     2521 ttacaatttt ccacaaaatc gtatcagcga tcatagaata aatcttactt tatatcgctt
     2581 agatgccatt atgcaagatg ggctttttga tgaaatcata gaacctttaa tcactcatca
     2641 tcaagcccaa gctttacaag aacaaaattt ataagacttt atataaatta atgcttatgt
     2701 cgatttccac tagcacctac atgtgcgaca tttccatttt ctatatcata agcttgacca
     2761 aaacctttta caaagcgtcc ttttttaaat tcaagcttta ctagatgaaa atcaagcatc
     2821 ttgcgtatag ttttaatgcc tccttctcct ccggtttgtt tctcaaactc atcataaatt
     2881 tgatcaaatc tttcatctct ctctaaaaaa cttgcatcta ctctatagcg caatcttttg
     2941 cgaagtataa cagaagcggc tttactctca tcctctaaaa acattatttc tatattgttt
     3001 ggatttgctt tgatgttgtt aaaatgttcg cttacttcac ttatataaat ataatttccc
     3061 cattgtgtgc ttacaaaagg tgcatacgag caaacaactt ctccatttac atttaaagtt
     3121 gccaaagcta cagaattaaa acttagcata aattcattta attctttttc tactccacta
     3181 aaattttgct cactctttgc actcatgcaa agggatatta tagtatcttt aatcgtgttt
     3241 tcatcggctt ttttaggaaa ttccactcgt aaattttctt tatcattgta aacaagatcc
     3301 aagccattaa aatcaacact ttttagaaaa acatcttgta cttgctcaat accaccaaat
     3361 tttttacaaa gatcaactaa atttgattta tgatgatcat tcatatgaga aataatgctt
     3421 tcaaaattca tttttatcct ttcttgattt taaaataaaa tattaaaaaa aatggtatca
     3481 attatcaaat taaaaataac ttaaaatata aaaattatct attttaacaa aaat
//
LOCUS       DARGBD010000127         3133 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.127, whole genome shotgun sequence.
ACCESSION   DARGBD010000127 DARGBD010000000
VERSION     DARGBD010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3133)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3133)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3133
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.127"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1161)
                     /locus_tag="SFZ04_001699"
     CDS             complement(<1..1161)
                     /locus_tag="SFZ04_001699"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEG8065934.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDK"
     gene            complement(1255..2280)
                     /locus_tag="SFZ04_001700"
     CDS             complement(1255..2280)
                     /locus_tag="SFZ04_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG8065935.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            2480..3088
                     /gene="plsY"
                     /locus_tag="SFZ04_001701"
     CDS             2480..3088
                     /gene="plsY"
                     /locus_tag="SFZ04_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEG8065936.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            3073..>3133
                     /locus_tag="SFZ04_001702"
     CDS             3073..>3133
                     /locus_tag="SFZ04_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEG8065937.1"
                     /translation="MQSHIKIKFHFKCIIGILDF"
BASE COUNT         1052 a          560 c          410 g         1111 t
ORIGIN      
        1 tttatctaaa tctttttttt ctgcaatttt aagattggtt aaaagctgag gataaggttt
       61 gacttgaccc aaaatagagc ttgcagattt tttcttagaa agcattaaag cactaaattg
      121 caaagcagct atcaaaccat ctccagtttt tgcataatca ctaaaaataa tatgcccact
      181 ttgctctcca ccaaaatttc caccattggc ttttaatttt tcaagcacat atttatcgcc
      241 cacattacaa gtatcaagtt ctataccatg tttatttaaa aattctttta aagcaccatt
      301 actcattata gtggctacaa cacttgattg taatttacct tgttctttaa gataaagtgc
      361 taaaacccct aataaactat ctccattagc cacttcgcct ttttcatcta caaccaccaa
      421 acgatctgca tcaccatcaa aagcaaagcc cacatctgca cgcaaacgct ttacctcagc
      481 agctaaattt gcaggatgta aagctccaca attttcattg atattaagtc cattaggttt
      541 atcgctcatt actataactt cagcacctaa ttccttaaaa acagtaggtg ctaccttata
      601 agctgcccca tgagccacat ctaaaaccac acgcaaagac tttaaagtaa gatcttttgg
      661 aaaagaattt ttaatagaaa caatatacct tcctataaca tcatcaattc ttttcgcttg
      721 accaattttc tccatatcta ccttagaggc ttgtataagc ttatcatcaa aataaatttc
      781 ttctattttt ttctctatat cttcactgag tttgtttcca tgagcatcaa aaaatttaat
      841 accattatca taataaggat tgtgagaagc tgaaatcata atccctgcat cacaacgcat
      901 atcttcagtt aagaatgcaa tcgcaggagt tggcatagga ccaatttgta taacattata
      961 tcctatagaa gtaagccctg aaacaatagc attttctatc atatagccgc ttcttcttgt
     1021 atcttttcct actaagatat tattagtaat acttttatct ttaaaataaa tacccgcagc
     1081 cattgctaaa cgcatagcca aaaaactatc taaaaattca cccgcttttc cacgaactcc
     1141 atcagttcca aaaagtttca ttgcaaacct ttctagcaaa atttaaagac aattataaca
     1201 aagctaagat aaagaaattt aaacaagctc taaaattaga gcttgtttgg aaccttatag
     1261 ttcaggttta ggagtttttt cagtagaaat aggaagttgt ggataaacaa ttgctggttt
     1321 tgttcctgtt aaagatttta agaaagtttc aatacttttt gcttctttat cagaaatttt
     1381 aatgccaagt tgcacactac ccatttcctt aatagcatct tttaaattcc aaatcgcacc
     1441 attatgaaaa tatggagcag tttcagcaac atttcttaaa gttggagttt ttaccatgcc
     1501 atttgcatca cctttaaaat cacctaaatt tgcaaattta tatttaccag caacttcaaa
     1561 cgcttgcata ttgccaccta aattcacacc attatgacaa gctacacaac ctttatctat
     1621 aaaaagcttt aagccttttt gttcttcttt tgttaaagct ttttcatcgc cttctaaaaa
     1681 tttatcaaaa cgagatggag tgatcaaagt tctttcaaaa tttgcaattg catcagcaat
     1741 attgtcaaaa tttacaccgc ttttaccata gattttttta aactcactca catattcagg
     1801 caaagatgaa attttttcta ctgcaagttt agcaggagtt gccatttcag gatcagcttg
     1861 gattggacct ttagcttgat cggctaatgt tcctgcacga ccatcccaaa attgagtatt
     1921 atttaaaact gcattataaa ctgttggtga atttaaatga tgaggatttg ctgtccattt
     1981 atgacctatt gcagtactga ttccatctgt tccaccaagt cctacattat gacaggtatt
     2041 acaagaaatg ataccacttt ttgaaagacg tggttcaaaa tagagctttt tgccaagctc
     2101 tgctttttca agagtaaatt cactagcctt tactccattt tgttttaaaa tttcatcaac
     2161 gcctttttga tcttttggta aggcaacaag acctgaattt ttagcttcat ctataagact
     2221 tgcagcattt aagcttgaaa aagcaactaa ggatgcgatt agcaatgatt ttactttcat
     2281 ttataaactc ctattaaaga taaattaaaa taaaataata atcatttaga gcttaaataa
     2341 aaataaatat tattaaaaaa tatttacaat taattaatac tatttttatc ttaaaaatta
     2401 ttttttgttt atttattttc ataagatata atttttagtt ataaatctta aaattttaag
     2461 atgatttgaa aaggatatta tggaaaattt aataatttac gcttttatat atcttttagg
     2521 ttcaatccct tttgggctaa tcctagctaa attttttgct aaaactgata tcaaaaaaga
     2581 aggttcaaaa agtataggag caaccaatgt tttaagagta gtaaaagaaa aaaatcccaa
     2641 actagcaaaa aaacttgcca ttgctacaat aattttagat tttgcaaaag cagctattcc
     2701 tttactaatc ttgaaatttc ttcattatga tcaagctttg ctttggagcg tcgcagtttt
     2761 ggctattttt ggacactgtt tttcaattta cttgttattt gaaggaggga aaggcatagc
     2821 aacaggagca ggcgctatga tagttttact tccattggaa gtgcttacag catttattgt
     2881 gtgggtagtt attggaaaaa tttttaaaat atcttcgcta gcttctttgg cagcgttact
     2941 tgcttttgtt ataagttctt ttatatttaa ttatgactta gaaattcata cacatgcacc
     3001 cgttttcatt atcgctttta ttatagtata taaacatcta cctaatatta aaagattgat
     3061 ttttaaagaa gaatgcaaag tcatataaaa ataaaatttc actttaagtg tattattggt
     3121 atattagatt tcg
//
LOCUS       DARGBD010000128         2989 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.128, whole genome shotgun sequence.
ACCESSION   DARGBD010000128 DARGBD010000000
VERSION     DARGBD010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2989
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.128"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..596)
                     /locus_tag="SFZ04_001703"
     CDS             complement(<1..596)
                     /locus_tag="SFZ04_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG8065938.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGIVAYIIYSYID"
     gene            738..1544
                     /locus_tag="SFZ04_001704"
     CDS             738..1544
                     /locus_tag="SFZ04_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HEG8065939.1"
                     /translation="MRGIFYIIALFSLLNGDELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQDNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKKLQLGMSFVIPTYTAFVFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSTRETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(1541..2917)
                     /locus_tag="SFZ04_001705"
     CDS             complement(1541..2917)
                     /locus_tag="SFZ04_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG8065940.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
BASE COUNT         1085 a          476 c          444 g          984 t
ORIGIN      
        1 ttatcaatat atgaataaat aatataagct acaatacccc ctaaaagagg cgaagctacc
       61 caagaaatag ctattcttaa aatttcactc catttaacca tagagagtgt ttggattcca
      121 tcaaatttta aaagccccat cataatacta gcacctacaa tcccaccaac tatactgtgt
      181 gtggttgata caggtaagcc tttcttggtt gcaataaaaa tccaaacccc agagcttaaa
      241 agtgcagcaa gcataatgat aacaaaaagc ataggatcta aagaatttgg aaaaataaca
      301 ataccgctgc gtatggtctt agtaacttct gcgcctgcga agattgcccc gcttagctca
      361 aaaacagctg ctataattaa agcttgttta atggttactg tttttgcgcc aacgcttgtt
      421 ccaaaagaat tggctacatc atttccacct atattaaatg ccataaaaat gccaaatata
      481 gaagcaagaa taaaaagaat caattgatgt tgcgaaatat aaccaaatcc ccaaataaca
      541 aatgcgatag tactgataat aaaaataaca aaagctatga ggttgtcttt ttgcattaat
      601 aacccttttt tattttaatt atacacttat ttactttaaa tttgctaatt ttatttttta
      661 gtctttgtgg aatttttatt tatattattt ttttataata aatacttaaa caagaaataa
      721 taaggaatat aagaataatg aggggtattt tttatataat agcattgttt tctttactca
      781 atggcgatga acttacagag gctttagcaa aaaataataa tcaaaattct tgggagcact
      841 ttgattataa aaataccaaa gaagctccaa aaattcaaga agagaatgtg gattttaaaa
      901 gcacttttga tagcttactt tcaaaaactt tagaaaataa taatggtata gataaaacag
      961 atgggaattt agattttcaa aatgaaaacg cgcaggttaa aaatttaagt tctctttatg
     1021 agggggagaa taattctttg ctttttcaaa aagaactttt tgtggctcaa gataattata
     1081 attactcagg gggtttaatc aatcgttatg aaaaagatga ttttttattt ggagttaatg
     1141 gttttattga taaacaaaaa gaacaaaaag atactaaaag ctttggtaca gagtttggtt
     1201 atagtaaatt tataaaggct tatagtaatt attatatacc caatgaagca gaaaaaaaat
     1261 tacagcttgg aatgagtttt gtaattccaa cttataccgc ttttgttttt gatataagta
     1321 aggataatga taaaactaat tatcaagtat cttactctcc ttatagtgta tttagtttaa
     1381 atttattgcg tcgtgattat agtacaagag agactgttga tgatactgtt gttcaagttg
     1441 gatttagttt taatttcaat gaaagttttt taaagcaatt tagaaaaaaa gataatactt
     1501 tagaggaggt taatcgatat gatttcctcc aaagaactca ttagttcatt ccagcattat
     1561 gaaatttttc tggattgtcc atagcgtagc ggaatttttc ccaatcaatt tgtttatccc
     1621 agatagcaac gattaaagct gctactgaat ttccgcaaag atttccaacc gctctcattt
     1681 cagacataaa tttatcaaca cctaaaagaa cacctatagc agctactggt agaacttgtg
     1741 ctaaggttgc atttgcttct gaaatttcca tatttcctag agccgcaagc gtacttccaa
     1801 gcactataaa acctgatcca gttacaccta ctgcaccttt tgaggctatc attaatacta
     1861 ttaaaatact gatttcgtgt gctaaactta aatttacatt gaaagcttgt gctagaaaga
     1921 ttaagctcat agctagataa atatttgtac aatcaagatt aaaactatat cccgttggta
     1981 aaacaagtcc gactgttgct ttagaaagtc ctgctttttc tagttttctc attaaaggag
     2041 caagtgcaga ctcgcttgaa ctggttgcaa aaacgatcaa tacttctctt gagataaatc
     2101 tcataaattt gaagatattt acttttgcaa aataacaaat cagacctaag attccaaata
     2161 taaaaacaag acatgaaatc agcattacta aaagtaaata tgctaagttg atcaaagagc
     2221 caattccgta ttgagctatg agtacagcca ttgctgaaaa ggcggcaata ggactaaaat
     2281 acataatgat ttgtagaatt ttaaaaacaa aattttgtac cacttcaaaa actctttgaa
     2341 ttgcctgttt gtcttctatt ctcattaaag aaataatcaa agcagtaatt atggcaataa
     2401 ctaaaacttg tatggttttt ccttctgtaa aaggtgtgat aatatcagta ggcatagcat
     2461 cttttaaaat atgcataatc tcagagctcg cacttacttc tgtggtttga gaaatgtatt
     2521 tttgaacgct ttttgtatca agttgacttg gatcaagatt cattccatgg cctggttgca
     2581 taacatttgc cataaaaata cctatagcaa gtgctaaagt acttacaact tcaaagtaaa
     2641 taaccgcttt agcaccaatg ctacctactt tttttaaact ttcaagacta atgatgccca
     2701 aaaccaaagt aacaaaaata atagggccta taagaacctt taaagcacct ataaaataat
     2761 caactcctgg tttgctagca atggctaatt ctttatctgt atagccaagt acaatacctg
     2821 taataatgcc tataatcacc caaaatccaa gactttttat aatacgttta tataaaggcg
     2881 gttttctttc agctaaagtt tgacttaaag tttccaagtt tattcactcc ttttgatctt
     2941 tgtaaaatat aattttaaca atgtgtatcg taaattttaa caaaaaaac
//
LOCUS       DARGBD010000129         2954 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.129, whole genome shotgun sequence.
ACCESSION   DARGBD010000129 DARGBD010000000
VERSION     DARGBD010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2954
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.129"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            121..1989
                     /gene="rpoD"
                     /locus_tag="SFZ04_001706"
     CDS             121..1989
                     /gene="rpoD"
                     /locus_tag="SFZ04_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEG8065941.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTAKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2005..2517)
                     /locus_tag="SFZ04_001707"
     CDS             complement(2005..2517)
                     /locus_tag="SFZ04_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEG8065942.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(2514..>2954)
                     /locus_tag="SFZ04_001708"
     CDS             complement(2514..>2954)
                     /locus_tag="SFZ04_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEG8065943.1"
                     /translation="LNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRMLETYL
                     GALCFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVIDKNS
                     TKGLIVAILLMSFVPLLMGVNVAWYGHIFGFMCGYILAKIKEVK"
BASE COUNT         1264 a          442 c          431 g          817 t
ORIGIN      
        1 acagagcttt agaaaaattt gaaaaaatat tcaaatcata aacataataa ccgatttata
       61 tagaaagtta agcaattttt agataaaatc caaagcttat ataaatttca aggataatca
      121 atgaacgcca aaactcaaga agctgaatta gaagaattat ttcaagaaaa tgcaaaagat
      181 tatatcacat atgaaaaatt ggtaaaatat cttacaaaac aaccaagtgc atcaaccgct
      241 aaaaaagtgc aagcattaat gaaaaaacac aaagtgcaac ttttttcagc agctgaaatt
      301 gcacaaatga aaaacataga agatgcaaaa agacttcaag aagaaaaaca aaaactccaa
      361 gatacaagcc ttgagaacga atttgattta gccaatgaaa acgatttatt agaatggagc
      421 agatcagact ctcctgttcg tatgtattta agagaaatgg gacaaattgc tttattaaac
      481 aaagatgaag aaattgaaat ttccaaaaaa atagaacttg gcgaagatat tatcattgat
      541 gctttttgtt ctgtacctta tttgatagat tttattttag attataaaga acctttaata
      601 aacagagaaa gaagggtaaa agaactattt aaaagctttg acgatgaaga aaaaagtgat
      661 gataaacttg atgaacttga tatagatgaa gatgaagaaa acgaaacaga attagaatca
      721 gatgaagaaa atactaaaaa aaacagcaaa aaagaagatg aaagaacttt aaaagttata
      781 gaaaaattta aagctctaga aaaagctaaa aaagattggc taaaaacatc caaagacaaa
      841 gaaagcggag atgaactttt agataaatta agcattgcgt tcaaaaaaaa tattttaaaa
      901 gaaaaattaa tggatctagg ccctacttca aaacttatta gcgaaatcgt aaaatcaatg
      961 gaaactgcac taaaaagtga tgaagaattt gacaaagaac ttaagcgttt agaataccgc
     1021 ttacctatgt tttctgatga acttaaaaaa cgccatgcag atattttaaa agatattaca
     1081 aaattgagca aagaagaaat cacagagcga gctttagaaa caaccatggt aagcacttat
     1141 atggaaatta aaaaactatt tcaaactaaa gaagccagtg aaaaaagctt tgatcttgaa
     1201 aaatcacgct taaaagaaat tttggagcaa attaaacgcg gtaaaaaaat ctctgatgaa
     1261 gcaaaaggaa gaatggcaaa atcaaacttg cgccttgttg taagcatagc taaacgctac
     1321 acaaatcgtg gtctgccttt cttagacctt atccaagaag gaaatatagg tttgatgaaa
     1381 gctgtggata aatttgaata caaaaggggt tataaatttt ccacttatgc aacttggtgg
     1441 atcaggcaag ctatttcaag ggctatagct gatcaagcaa gaaccataag aattccaatc
     1501 catatgatag aaaccatcaa tcaaattaac aaaattatcc gcgaacatct acaaaaagat
     1561 ggaaaagaac ctgatgtcag tgttatagct aaagaagtag gtttaagcgt agataaggtt
     1621 aaacaagtta ttaaaatcac aaaagaacca atttctcttg aagctccaat aggaaatgaa
     1681 gatgatggta aatttggaga ttttgttgaa gatagaaatt cactttctcc aatggatcat
     1741 atcttaaagg atgatttaaa agaacaaatt gatgaagttt tagatcaatt aaacgataga
     1801 gaaaaagcgg taattcgtat gcgttttggt ttaatggatg atgaaagtga tagaacttta
     1861 gaggaaattg gaaaggaact taatgtcact cgagaaagag tgagacaaat agaaagctca
     1921 gctataaaaa aactcaaaca ccctaaagta ggaagaaaac taaaaaatta tatagaaggt
     1981 tggaagtaag agtcaatctc cttactaaaa acccagatct ttttcttctt ttaacttgcg
     2041 tacatgttca aaaaaaacta attttccgct atgttttttt aaatttttaa attccttaat
     2101 atcaaattct aaacacaaga tagaagaagt tggaaaagaa gctaaacata gcgaacttaa
     2161 taactctcca agctccatta aactaggatt atgacccact aaaaatactt cattaaactc
     2221 atcatcaata tcttgcagaa tttttagcaa attttcaaca ttgcaaagat acaatctttc
     2281 atcaaaacaa attctatttt tatcaaaatt ataaaatttg gctatttttt tcgctgtttt
     2341 agcggttcta acagcaggac ttgatagcac caaatcagga tgaatttcat gcgaagcaag
     2401 atttttaaaa agttttttta aatcttcctt tccactctta gtaagttttc tttcaaaatc
     2461 atcgatgtct tcactcttac ttgcttttgc atgtcttata atataaattt ttttcatttt
     2521 acctctttta ttttagctaa aatataacca cacataaacc cgaaaatatg accataccaa
     2581 gcaacattta cccccataag caatggcaca aaactcataa gtaaaattgc cactataagt
     2641 ccttttgtgc tatttttatc aataacagca taaaagccca ttaaaacaca aattgcacca
     2701 ctagcgccta tgacatttat attttctcca aaatatttaa aatcaaaata cacataaaaa
     2761 acacttaaaa gtgagcacaa caatccgcca ataaaataaa taaaaataaa acacaaagca
     2821 cccaaataag tttctaacat acgcccaaat tgaaacaaaa ctatcatatt taatataaga
     2881 tgagttaaat ttccatgtaa aaacattgaa cttaaaagct gccaataagc tccattaaaa
     2941 aataaaatat tcaa
//
LOCUS       DARGBD010000130         2952 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.130, whole genome shotgun sequence.
ACCESSION   DARGBD010000130 DARGBD010000000
VERSION     DARGBD010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.130"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            31..336
                     /locus_tag="SFZ04_001709"
                     /pseudo
     CDS             31..336
                     /locus_tag="SFZ04_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344927.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            448..1395
                     /gene="arsP"
                     /locus_tag="SFZ04_001710"
     CDS             448..1395
                     /gene="arsP"
                     /locus_tag="SFZ04_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organoarsenical efflux permease ArsP"
                     /protein_id="HEG8065944.1"
                     /translation="MQSFLNTFKEFLYLFTELSVLFIAISFLVSIINQKYEGIFKKQL
                     AGDKISSYFKAIFLGALTPFCSCSTIPLLRAFLEAKVKLSVALAYLFTSPLINPIIFS
                     MLFITFGLKLSLTYVVFLVFLIFIVSFVFSKFKEESFLKHIPKNTKSNIFTQTTHNPS
                     NFIFKQKSCCANTQDKPKNITINYKELFKESLKNYKKLLPYIVVAVFIGAFIHGFIPQ
                     EILQKYLNGNEILSIVLAAFLGIFLYLRVETIIPIGLALLQMGISQGVIMSFLIAGAG
                     CSLPELILLKQMFKIKFLFLFVMIILGVAISFGIFINLI"
     gene            1405..1728
                     /locus_tag="SFZ04_001711"
     CDS             1405..1728
                     /locus_tag="SFZ04_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8065945.1"
                     /translation="MQKFLTIISAINDESRVLILHHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVKRKGTWAYYGINNELLKLHLDLFENIKNLELKNAIKKNENII
                     TQICP"
     gene            complement(1736..2167)
                     /locus_tag="SFZ04_001712"
                     /pseudo
     CDS             complement(1736..2167)
                     /locus_tag="SFZ04_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
     gene            2246..>2952
                     /locus_tag="SFZ04_001713"
     CDS             2246..>2952
                     /locus_tag="SFZ04_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG8065946.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTILKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVANTPGNTFLFDQ
                     KNKIFAATNKELLNPSI"
BASE COUNT         1052 a          398 c          371 g         1131 t
ORIGIN      
        1 tgttataatt ttaaaaaata aggatttata atgaaaaaat atcattctct ttgtcctatt
       61 gaaaccacgc ttaatttgat aggaaataaa tggaaaattt taattatttg agatttgttg
      121 caagggacta aaagatttgg agagttaaga aaaagcattt catttacaaa aaatcaaaac
      181 atctctcaaa atgtccttac acaaaattta cgagaattag aagaagcaaa actgatcaaa
      241 cgcaaagttt acgcagaagt tcctccaaag gttgagtact tacttatatc tttaggcaat
      301 agtttagaat ccatcttaaa aagtcttgag aattagggaa atagctataa aatatcgttt
      361 aagaaacaaa ttaatatatc aatatatata ttgatatatt aatttatata tgttatattt
      421 ttggaaatat ttttaaaagg ataaaaaatg cagtcttttt taaatacttt caaagagttt
      481 ttatatctat ttactgagct ttctgtactt tttatagcta tttctttttt agtttctatt
      541 atcaatcaaa aatacgaagg aatttttaaa aaacaacttg ctggtgataa aatttcaagt
      601 tattttaaag ctatattttt aggtgcttta acgccatttt gttcctgttc taccataccg
      661 cttttaagag cttttttgga agcgaaagta aaacttagcg tagctttagc ttatcttttt
      721 acttcacctc ttattaatcc tatcattttt tccatgcttt ttataacttt tggtttaaag
      781 ttaagtttga cttatgtggt ttttttggta tttttgatat ttattgtttc ttttgttttt
      841 tccaaattta aggaagagag ttttttaaaa catatcccta aaaatacaaa atcaaatatt
      901 tttacccaaa ccactcacaa tcctagcaat tttattttta aacaaaaatc atgctgtgca
      961 aatactcaag ataagcctaa aaatataacg ataaactata aagaattatt caaagaaagt
     1021 ttgaaaaatt ataaaaaatt attaccctat atcgttgtgg cagtttttat cggtgctttt
     1081 attcatggtt tcattcctca agaaatttta caaaaatacc taaatggcaa tgaaatttta
     1141 agcattgtat tagcggcttt tttaggaatt ttcctttatt taagagtaga aactattatt
     1201 cctataggct tagcactttt gcaaatggga atttcccaag gagtgattat gagtttttta
     1261 atcgctggtg ctggatgttc tttacctgag cttattttac tcaaacaaat gtttaaaata
     1321 aaatttttat ttttatttgt tatgattatt ttaggcgtgg ctatatcttt tggaattttt
     1381 attaatttaa tttaaggaaa taaaatgcaa aaatttttaa ccattatttc agcaatcaat
     1441 gatgaaagta gggttttgat tttgcatcat cttttaagat acaaagaact ttgtgtttgt
     1501 gatctacaag agctcttaaa catgggtcaa tcaagacttt caagacattt aaaaatttta
     1561 aaagatgcag gatttttata tgtcaagcgt aagggaactt gggcgtatta tgggattaat
     1621 aatgagcttt taaagctgca tttagatctt tttgaaaata tcaaaaattt agagcttaaa
     1681 aatgctatta aaaaaaatga aaatattatt acccaaattt gcccttaata taaaatcaac
     1741 ccttaaactt atgcaattta tcacaaggtt gatagtcctt gctttctgga ttaaacccat
     1801 cgacttcatt tgcaagcatt tcttcataaa tttttatctt tttgcttaaa actttttcac
     1861 tttcttttaa tgttttaatc tggttttgta attttttctt tgtttgcttt aacatctctt
     1921 gtctctcttt ggcagttttt atacccaaag agcaaagttt tatataatgt ttgatttgtt
     1981 ctattggcat acctgaaatt cgaaaccatt ctatccattt tgcccattct atatcgcttt
     2041 ttgaaaaata tttcacacta ttttcatctt tttgaacaaa aggaaacaaa cctttttagc
     2101 ccaaaatctt aaagtatgag cactaatttt tgtttctttt tctacctctt ttcatagtat
     2161 aagccatatt ttctcctttt taaaataaaa ataaaaattt atttttattt ttttgtgata
     2221 aaataatagc caaattatta gttttatact aaaaataaca aaaattaaaa ggaaaataat
     2281 gaatagtatt aaaatcaaac tttctctcat tgcaaattta attgcaattt ttgccttaat
     2341 tgttctaggt attgtaagtt tttattttac aaaaacctca ctatatgaaa gcactcttaa
     2401 aaatcaaact gatctactta aagtcacaca atctaccgtt gaagatttcc gttccacaaa
     2461 tcaatctttt actagagctt tagaaaaaga tatcgcgaac ttaccttatc aatctttaat
     2521 cactgaagaa aatattatta acaatgttgg tccaatattg aaatattatc gtcatagtat
     2581 aaatgcacta aatgtttatt taggtttaaa caatggaaaa gttttactta gtcaaaaatc
     2641 taatgatgca aaaatgcctg aattacgtga tgatttagat ataaagacaa aagattggta
     2701 tcaagaagct ttaaaaacaa atgatatttt tgttacacca gcatatttag atacaatttt
     2761 aaaacaatat gtaataacgt attctaaagc tatttataaa gatggcaaaa tcataggagt
     2821 actgggtgtc gatataccat cagaagattt gcaaaattta gttgcaaaca ctcctggaaa
     2881 tactttttta tttgatcaaa aaaataaaat atttgcagca accaataaag aattattaaa
     2941 tccatccatt ga
//
LOCUS       DARGBD010000131         2933 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.131, whole genome shotgun sequence.
ACCESSION   DARGBD010000131 DARGBD010000000
VERSION     DARGBD010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2933)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2933)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.131"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            43..2133
                     /locus_tag="SFZ04_001714"
     CDS             43..2133
                     /locus_tag="SFZ04_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HEG8065947.1"
                     /translation="MKIFKIIFLIISIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGSIGRNIGRKAITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDINYDKARAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQAPIPVNNDTSKLIDDNASTDLQAAAAMDVRLQFILDNIST
                     KFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDEILKNYDGFSTSMVDDLQGIYLDIFESSGMENKIGAVDSGLKLKIESLFSK
                     GMALIKASADKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     IVAIVSYLVQSGNKNRLNIAYSALFTGVILSFITAFGVSWLFKENAGQSREFIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDTKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
     gene            2130..2669
                     /locus_tag="SFZ04_001715"
     CDS             2130..2669
                     /locus_tag="SFZ04_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HEG8065948.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGYPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            2752..>2933
                     /locus_tag="SFZ04_001716"
     CDS             2752..>2933
                     /locus_tag="SFZ04_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HEG8065949.1"
                     /translation="MSIYFMHFLISVLPLSILMAFITPNKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLI"
BASE COUNT         1030 a          429 c          505 g          969 t
ORIGIN      
        1 gataataaat attattttta tcaaaaatca aggataatga taatgaaaat ttttaaaatt
       61 atatttttaa ttataagtat ttttttatca agctcagctt ttgctagggt agatgattat
      121 attaatgaag caaatcttat caaagatatg ctaaaacaaa gcatagaaac ttataaaaag
      181 ggcgataatc taggcgccaa aaagcttagc gaagatgcgt attttcaaca ttttgaaaat
      241 atggaaggct caataggaag aaacatagga agaaaagcta tcactatgga gcgtaaattt
      301 gtaaatttgc gtcgcatgta taaagatgaa gctcctttga cacaaattaa tgctttaatt
      361 gatagtcttt attatgatct tgatgaagta gctccgattt tacaaaatgg atatcgttta
      421 aaagcagaag caagcgatat aaactatgat aaggctagag ctgaaaaatc aagcctagaa
      481 gccaatgcca aacgcgaagc tgatgcagaa gctttaatcg cacaaatgat gggtgtagat
      541 aaaaaagatt tagcacaaag ctctttaacc acccaagctc ctatacctgt aaataatgat
      601 acaagcaaac ttatagatga taatgcaagc accgatttac aagctgccgc tgcaatggac
      661 gtaagattgc aatttatact agataatatc tctaccaaat tttcacaggc agctaatgct
      721 tttaaagaaa aaaactacca aactagtaaa gattttttaa atgatgcctt atttagtgat
      781 tatcgcaata ccaaagtaga aattttagta aataaattta ccaaagcagg aaacgatcaa
      841 aaaattcaac aagccatacg cacccttata cgccaaatca acgatgcaaa aatagatgaa
      901 aaaggcttaa gagatggctt agataacata gaagaacaaa tttttgatgt tttcttacaa
      961 attccaaatt cagaactttc aagtttgcaa atttcaggct ttaatgatga aacaaaaggc
     1021 aaagattatg ccaaagtttc taatgatatc aaacttgctt tagatgaaat tttaaaaaat
     1081 tatgatggct ttagcacttc tatggtagat gatttacaag gaatttatct agatattttt
     1141 gaatcaagcg gtatggaaaa taaaatcggt gctgtagata gtggcttaaa acttaaaata
     1201 gaaagtttat tttccaaagg catggcactg attaaagcaa gtgcagataa aaaagagctt
     1261 gaagctactt ttaatgactt agaacaactc atagccagca gcgtggataa aattcaagat
     1321 tctactcctt attcgctgtt tatatgggct ttaggtatta ttttgcgtga aggcttggaa
     1381 gctttgatta tcattgtagc cattgtttct tatcttgtgc aaagtggcaa caaaaatcgt
     1441 ctaaatatcg cctatagtgc tctttttaca ggagtgattt taagttttat taccgctttt
     1501 ggagtttctt ggctatttaa agaaaatgca ggtcaaagta gagagtttat agaaggtatt
     1561 accatgctta tagccgtatt actactcttt tatgtgggct tttggctact ttcaaacgca
     1621 caaaataaaa aatggacaag ctttatcaaa caaggtgcta tagatgctat atcaaataat
     1681 agcgcaaaaa ccctttggat taccgtattt ttagctgttt atagagaagg tgcagaaact
     1741 gtgctttttt atcaagcctt gctttttgat actaaaacaa gcactgattt tggtgctgtt
     1801 tttggcggac ttggacttgg aattttaata cttattgttt tatattttct tttaaaagca
     1861 ggagccattc gcatacctgt aaaacaattt ttctatatca cttcttacat tattttttac
     1921 atggtttttg tttttacagg caaaggcata gccgaactca tagaaggaaa agtcatcatt
     1981 cctagtctta tacctatgaa ttttgaaccg attttatggc ttggaattta tccttactat
     2041 gaaactttaa tccctcaatt tatagttttg atcatgctaa ttattggcat tttaataaca
     2101 aaacaaattt caaaaaaagg agtaaaatca tgataaaaaa agttttatca gtagttgctg
     2161 cagctgcggt tattagtaca aatttatttg caggcgaagt gccgatcggc tatccaaaag
     2221 aacttaatgg catggaaata gccgctgttt atttacaacc tattgaaatg gagccaagag
     2281 gtattgactt agctgcatct ttagcagata ttcacctaga agctgacatt cacgcactta
     2341 aaaacaatcc aaatggtttt ccagaaggtt tttggatgcc ttatttaact atagcttatg
     2401 aacttaaaaa taccgacaca ggtgcaatta aacgtggaac tttgatgcct atggtggctg
     2461 atgatggtcc tcactatggt gcaaatattg ctatggaaaa agataaaaaa ggtggctttg
     2521 gcgtaggaaa ttatgaactt actttttata tctcaaatcc agaaaaacaa ggttttggac
     2581 gccatgttga tgaagaaaca ggtgtgggta agtggtttga accttttaaa gtagattata
     2641 aattcaaata cacaggcacg ccaaaataat tttacgctcg gattttccga gtgtttgaat
     2701 atttttattt ttatttgaaa aattaaaata acaatgttta aagagtaaat tatgagtata
     2761 tattttatgc attttcttat cagtgtttta ccgctaagta ttttaatggc ctttatcact
     2821 cctaataaaa aatatatttt taaaagtttt ttagtagttt ttttgggctt tttatttgga
     2881 tattttgctt tttttatcgc agcacaattt ttaaaaaccg aaaatttaat ctt
//
LOCUS       DARGBD010000132         2886 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.132, whole genome shotgun sequence.
ACCESSION   DARGBD010000132 DARGBD010000000
VERSION     DARGBD010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.132"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(166..693)
                     /locus_tag="SFZ04_001717"
     CDS             complement(166..693)
                     /locus_tag="SFZ04_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG8065950.1"
                     /translation="MSDFCIIGKNINMYLVDDEDAGFIFELRSDVVKNKFLNKIDNDI
                     KKQREWIRLYKKREKNKKEFYFTIRNKNNEKLGLVRLYDFIDDSFCWGSFIIKHGVAF
                     YISIEVVMNVYEFAFYNLGFNASHFDVRKDNDRVVAFHKKFGAKIIKEDVDNFYFNIS
                     KQEYEIAKEKYKKYL"
     gene            complement(715..1158)
                     /locus_tag="SFZ04_001718"
     CDS             complement(715..1158)
                     /locus_tag="SFZ04_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEG8065951.1"
                     /translation="MIHKMSDVQSSNIGKNTNIWQFCVVLPNAKIGDNCNICSHCFIE
                     NDVVIGDNVTIKCGVQIWDGITIEDNVFIGPNVTFCNDKYPKSKQYPKEFLKTIIKKG
                     ASIGANATILPGVIIGENAVIGGGAIVTKDIAANTTYYCKIISKQ"
     gene            complement(1148..1552)
                     /locus_tag="SFZ04_001719"
     CDS             complement(1148..1552)
                     /locus_tag="SFZ04_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxcM-like domain-containing protein"
                     /protein_id="HEG8065952.1"
                     /translation="MKNYKILKLDAIKDDRGKLVALESNKEIPFEIKRVYYIFDTDPN
                     FPRGAHAHKNLEQVLIMMSGSCDIILNDGKNCEKICLNRPDMGLYIGKNMWREMKNFS
                     YGAKLLVLASDFYDEKEYIRNYDEFLRNINDT"
     gene            complement(1549..1998)
                     /locus_tag="SFZ04_001720"
     CDS             complement(1549..1998)
                     /locus_tag="SFZ04_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002912325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FdtA/QdtA family cupin domain-containing
                     protein"
                     /protein_id="HEG8065953.1"
                     /translation="MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLNDS
                     IRGDHANLNSEFIFIALNGSCEILIDDGQTKQKIILNDKTKGLYIDKMIWKQMYNFSK
                     DCILLVLTNTYYDEKEYIYDYKYFCELKNNIGRRGGVCYKNHALKVA"
     gene            complement(2001..>2886)
                     /locus_tag="SFZ04_001721"
     CDS             complement(2001..>2886)
                     /locus_tag="SFZ04_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEG8065954.1"
                     /translation="NPNYVFIQGDISDVFLVNEIFSKYKINAVINFAAESHVDNSIKN
                     PDIFIKTNIYGTWNLLNSAYKTWFLEPFLKKDKFKQSFFYQISTDEVYGSLGENGKFT
                     EDNAYAPNSPYSASKASADMLVRSYHHTYGLNAVISNCSNNYGPFQHDEKLIPTIIRN
                     ALNNAQIPIYGDGKNIRDWLYVKDHCVAIESIYKYAFEKIKENNSFFDVFNIGTNEEW
                     QNIDIANKICSYLDNVLPKNTSYKEQITFVKDRAGHDRRYAIDPTKLQRVIGWKAQEN
                     FNSGLDKTIQWYIKKYKG"
BASE COUNT          958 a          467 c          265 g         1196 t
ORIGIN      
        1 tagatttaat aattttacta ttattgataa tgggaagttg atattcttga aaaataaatg
       61 ctcgaattta attatgtgtt tcaaaacttg ttttttaaaa ttaatttcta tgatcaaggt
      121 ttatatcttt ttttgaaaaa tgattttaat aatattttag actatttata gatatttctt
      181 atatttttct tttgcaattt catattcttg ttttgaaatg ttaaaataaa aattatcaac
      241 atcttcttta ataattttag caccaaattt tttatgaaag gctacaactc tatcgttatc
      301 ttttcttaca tcaaaatgac tagcattaaa acctaaatta taaaatgcga attcatacac
      361 attcataaca acctctatgg atatataaaa ggcaacccca tgttttatta taaaacttcc
      421 ccagcaaaaa gaatcgtcaa taaagtcata caatctaact aggcctaact tttcattatt
      481 tttatttctg attgtaaaat aaaattcttt tttatttttt tctctcttct tatataatct
      541 aatccattct ctttgctttt ttatatcatt atctattttg tttaaaaatt tattttttac
      601 aacatcactt ctgagttcaa aaataaatcc agcatcttcg tcatcaacta aatacatatt
      661 aatatttttt ccaattatgc aaaaatcact catttgcata atccttgtaa aaaattattg
      721 ttttgaaata attttgcaat aataagttgt attggctgca atatcttttg taacgatagc
      781 ccccccccct atcactgcat tttctcctat aattacacct ggtaaaattg tcgcattagc
      841 accaatactc gcgccttttt taattatagt ttttaaaaat tcttttggat attgttttga
      901 ttttggatat ttatcattgc aaaatgttac atttggccct ataaaaacat tatcttctat
      961 tgttatacca tcccatattt gaaccccgca cttaatcgta acattatctc caatcacaac
     1021 atcattttct ataaagcaat gagaacatat attgcaatta tctcctattt tagcattagg
     1081 taaaactacg caaaattgcc atatatttgt atttttacct atattactac tttgtacatc
     1141 tgacatttta tgtatcatta atattcctta aaaattcatc ataatttctt atatactctt
     1201 tttcatcata aaaatcactt gccaaaacta gcaattttgc tccataagaa aaatttttca
     1261 tttctctcca catattttta cctatataaa gacccatatc aggacgattt aaacaaattt
     1321 tttcacaatt ttttccatca tttagtatta tatcacaaga accactcatc attataagca
     1381 cttgctctaa atttttatgt gcatgtgctc ctcttggaaa atttggatct gtatcaaata
     1441 tataatacac cctttttatc tcaaatggaa tttctttatt gctttctaaa gctactaatt
     1501 tacctctatc atcttttatg gcatctaact ttaaaatttt ataatttttc atgccacttt
     1561 taaggcatga tttttatagc ataccccccc ccgccgccct atattatttt ttaattcaca
     1621 aaaatactta taatcataaa tatactcttt ttcatcataa taagtatttg ttaataccaa
     1681 taaaatacaa tctttagaaa aattatacat ttgtttccat atcattttat ctatatataa
     1741 gcctttggtt ttatcattta atattatttt ttgttttgtt tgtccatcgt ctattaaaat
     1801 ttcgcaactt ccatttaaag ctataaaaat aaattctgaa tttaaattag catgatcacc
     1861 tcttattgaa tcatttaaaa aatcatatat ataaaaaatt cttttaattt caaatggaca
     1921 atttacatct ttttgatgga catttaatat tgaattttta ctatttatgg ttttgaattt
     1981 taatattgta tagttcaaat ttaacccttg tattttttaa tataccattg tatagtttta
     2041 tctaaaccgc tattaaaatt ttcttgtgct ttccaaccta taaccctctg taattttgtc
     2101 ggatctatgg catatcttct atcatgacct gctctatcct ttacaaaagt aatttgctct
     2161 ttataagaag tattttttgg caatacatta tctaaataag aacaaatttt attagctatg
     2221 tctatatttt gccattcttc atttgttcct atattaaata catcaaaaaa gctattattt
     2281 tcttttatct tttcaaaagc atatttataa atactttcta tagccacgca atgatctttt
     2341 acatatagcc aatctcttat attcttacca tctccatata ttggaatttg agcgttattt
     2401 aatgcatttc ttattatggt aggtataagt ttttcatcat gctgaaaagg tccgtaattg
     2461 ttagaacaat tagaaataac agcatttaat ccataagtat gatgataact tctaacaagc
     2521 atatcagcac ttgcttttga agctgaataa ggggaatttg gagcataagc gttatcttct
     2581 gtaaattttc cattttctcc caaagatcca taaacttcat ctgtacttat ttgataaaag
     2641 aaactttgtt taaatttgtc ttttttaaga aaaggttcga gaaaccaagt tttataagct
     2701 gagtttaata aattccaagt tccgtatata tttgttttta taaaaatatc tggatttttt
     2761 atagaattat ctacatgtga ttctgctgca aaatttataa ccgcatttat tttatatttg
     2821 ctgaaaattt cattaaccaa aaaaacatca cttatatctc cttgaataaa tacataatta
     2881 ggatta
//
LOCUS       DARGBD010000133         2860 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.133, whole genome shotgun sequence.
ACCESSION   DARGBD010000133 DARGBD010000000
VERSION     DARGBD010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2860
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.133"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..701
                     /locus_tag="SFZ04_001722"
     CDS             <1..701
                     /locus_tag="SFZ04_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8065955.1"
                     /translation="DLEQVQDLSKNLSNLSRRLNESLKELEPYTQNAKLNQAELKNLE
                     HKLNLSIKDLVQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQANRLLAQ
                     IEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEILI
                     SLNNEKYIDINIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDTRN
                     MKNLDLEMGMDKKV"
     gene            698..979
                     /locus_tag="SFZ04_001723"
     CDS             698..979
                     /locus_tag="SFZ04_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HEG8065956.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(976..1776)
                     /locus_tag="SFZ04_001724"
     CDS             complement(976..1776)
                     /locus_tag="SFZ04_001724"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG8065957.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLQIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTKK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(1773..2684)
                     /locus_tag="SFZ04_001725"
     CDS             complement(1773..2684)
                     /locus_tag="SFZ04_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG8065958.1"
                     /translation="MFYAPTYCLFFMTLAWDFVKLILALMGKRDKTYNLILRLIFELS
                     LIVLSVFLIYVSINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIHLGKNLHENFLDKL
                     ITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYALGNHEYYHGINEV
                     LDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLARIKVDLNTSKASIL
                     LTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHGLYDLGEKTKLYVS
                     SGAGFWGPSLRVFAPSEIVILNLKGKK"
BASE COUNT         1093 a          475 c          353 g          939 t
ORIGIN      
        1 tagatctaga acaagtgcaa gatttaagta aaaatttaag caatctttct cgtagactta
       61 atgaaagctt aaaagaactt gaaccctata ctcaaaatgc caagcttaat caagcagaac
      121 ttaaaaatct cgaacacaaa ctcaatcttt ctatcaaaga tctagtgcaa attaaaccaa
      181 aaacagaaca agatatagct gaatctttac atcatgatgt aaaatcaaca cttttgcaaa
      241 tttcaaattt ggctaaaaat gaaggcaatg aagctgtata caatcaagct aatcgtcttt
      301 tagcgcaaat tgaaatcaat cagcttatgt ctttagctaa tgattctatc aatacttatc
      361 tgcctttttc ttgggatgat ttaaatgatt ctaaaattat gtttagacgc ggaaaaaagg
      421 acaaattttt tgctcagatt aaactcgaat ttgcaaaact tggggattta gaaattctta
      481 tttctttaaa taatgaaaaa tatatagata ttaatattat ggcagaaaat attgaattta
      541 gaaaaaccat ctatgaaaat gcccatgagc ttaaaagaaa tatcaataaa gcaggacttt
      601 taagtgcaaa tttctttgta ggtgatatca taagaagtaa atttgatact agaaatatga
      661 aaaatttaga tcttgaaatg ggtatggata aaaaagtatg agcaaaatca aaagatcgat
      721 taaaaaagct gtagctctag gctatcaaaa agaaaaaaac tctgcaccaa aagtgcttgc
      781 aagtggcaaa ggcgaaagtg ctgctaaaat tatttcttta gccaaggaac acggagttcc
      841 tattaaagaa gatgaagatt taatagaaat tttaagcaag cttgacttag gtgatgaaat
      901 tccacctaat atgtataaag ctgtagctga agtttttgcc tttatctatc aaatggcaaa
      961 taaaactcct aaaaactaat ccgctatttt ttctccaaat ttaataccct gccctacttt
     1021 taaattaaaa gttaaaagtc ctttttgaga gattaaaact atagtagaac ctagctcaaa
     1081 atttcctagt tcttcgcctt ttttgaaatt taaattttca tattttttag taaaattatg
     1141 agaaatttta gcattggttt gtatgcttgc atcaaaatta aaacgcattt ttcctacatt
     1201 ttgcgctcct acaaaaacaa gccaaaaaat acctttttca ttttgacatt tcaagctcac
     1261 tctttcattt tttacatata aattactaat gcgttctaaa tgtttttcat ttacgctata
     1321 aagcactcca cttgtgtaag ttgcacttaa aatttgcata tcacaagggc tgtgataacg
     1381 atgataatct tttggagaaa gataaatatt gacataatca agcccatttt taagctcatc
     1441 tttttcaaag ctatctttta aaagctcctc aatgctataa gtatgtcctt ttatagaaaa
     1501 agcaaaatgt tcttcatttg ccaaaaaagt acttccacac tctaaaattt taccatcact
     1561 tggactgata aaaccttctt caagctttct tggaatttgc aaagttcttg taaaaagagc
     1621 atttaaactc tcgtattcac aagggctttt aaattcactc atatcgatat taaaatactt
     1681 aacataattt tcattaataa ctttttgtat cattttagga aatttaatcc ccgctacaaa
     1741 accaaaaagt ctcgaacttt cttttgaaaa actcattttt ttccttttaa atttaaaatc
     1801 actatttcac tcggagcaaa aactctaaga cttggccccc aaaatcctgc tccactactc
     1861 acataaagct tagttttttc tcctaaatca taaagcccat gaacaaaacc ttgctgaagt
     1921 ttaactaaaa acataaaagg gaaaatttgc cctccatgtg tatgcccact taaaacaaga
     1981 tcaaaatcac ttaaatcata aagcaaagct gttttaggtt gatgtgtgag taaaatacta
     2041 gctttacttg tatttaaatc cacttttatt cttgctaaat caggagcata taaaccccta
     2101 tcaagtccgg ctaaatctcc aagtccagca atatttataa aacccaaatc taaattttga
     2161 ttgactaaaa ttttcatatt agtatgtttt ctaagcaaat ccaaaacttc attgatacca
     2221 tgataatact catgatttcc caaagcataa aaagttccgt aagtggagtt aaaatcatta
     2281 agttttgaga tgtaattttt taaatcttta ggattggtat caatcagatc ccctactatt
     2341 acaaccatat caggactttg caaattcact ttagtgatga gcttgtctaa aaaattttca
     2401 tgcaaatttt tacccaaatg tatatcagta agcatgacaa tttttaaatc ttttttaaga
     2461 tttggtattt caacatcaac actctttact tcaggtgttt ttagagcatt atttatactt
     2521 acataaatta aaaacacact taaaactata agagaaagtt caaaaatcaa acgcaaaata
     2581 agattatatg ttttatctct tttacccata agagctaaaa tcaatttaac aaaatcccat
     2641 gctaaagtca taaaaaacaa acaataagtc ggcgcataaa acatggctaa aatttcatac
     2701 caagtatcac ttaaatattc atctctacga aatattaaaa acacagcttg agctaaaaaa
     2761 agcacaataa aaataaagga aaaaatttta taaaaatact taaaaagagt aattttcttg
     2821 attaatcttt tataaatata aacatttgct aagccaaaaa
//
LOCUS       DARGBD010000134         2796 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.134, whole genome shotgun sequence.
ACCESSION   DARGBD010000134 DARGBD010000000
VERSION     DARGBD010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2796)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2796)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.134"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1780)
                     /locus_tag="SFZ04_001726"
     CDS             complement(<1..1780)
                     /locus_tag="SFZ04_001726"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065959.1"
                     /translation="MFYKKNDLIDITNYLAMKSFGLKYFASEQTSQLLIYSKKKYCLR
                     YLVLERVDFDIKKLIVLISINSIEWKKIEYKYYIDKDLKIIIEINIPIYFKYIKLNYK
                     DNFYITRSNMKILVTKFLGLIVSNRPDGFASRIWAFLNAMYIAKKTGFKFGFVWPRFD
                     DVGGMISKKYITIDSEENIFDKNFIQNHSYTCSRLPQTHSYDNCLGPLSLKNIQKLPF
                     YEDYGHLVTCCIPLYELIFDIDIQEYQYKLRQIWNKLQFSYKYLNIKNIVENIYHKLN
                     NHFVAIHIRGGDIVNGEHRLFIMSSLWTYLYPLELVTQLIKMLLGQKIKIIVFSDDDE
                     AVEMIKKNLIYNQYNLENLYFSKDLTPKYLSIEENIFFNFQLLSKSRYIYGSQWSTFR
                     ILAGFLGECKKQEAILDTFTYDEQYQILSDNLRSVKTNRSYKAASCMYLYVIGRNIDK
                     DKECLIKILRKGFRYDPKNLSFKIKIIDLLFELDVVKAECEIKNIFFEKKYGFIELLF
                     SKFYKMEFEMEWRNYLKFANKNYPYISLIASYIAFYIGDIENSLKLYSYYKDDEEIKD
                     ITSKVFMCEIFQKNFYYLNQEIIDKNI"
     gene            complement(1784..2761)
                     /locus_tag="SFZ04_001727"
     CDS             complement(1784..2761)
                     /locus_tag="SFZ04_001727"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065960.1"
                     /translation="MSHALKIYTPGIQAQKSAFSQCAMMIAGRKNIISYHEIFSLKQQ
                     YQIIKSNLGLLGLDSLYDSMAYFQLYKLSRILNLTLDLSLNYIKKAMELDQDNDAWGI
                     HYIYCCFLLGDLEAIETFLKVLLDSNKLNNLLQTFIISKSMRIYKEQEDCFISFRSTK
                     IYPMINYVGIWLNYHYGEFVRMYKMYKNYQKYFNDLEVDTQCFFSCYQKKDLISNSAV
                     LIVKNHLSYKLGKILLECKNLKDFVEIPIIIKYFLWESKNEKAYFKSFLFEIEKLDDY
                     NQSCSIRNYLSYQLGKLIIESFKGWYKGYLLLLPYRAFILYRKIKKDKR"
BASE COUNT         1068 a          400 c          254 g         1074 t
ORIGIN      
        1 ttatattttt atcaataatc tcttgattta aataataaaa attcttttga aatatttcac
       61 acataaacac cttagatgta atatctttaa tctcttcgtc atctttataa taagaatata
      121 actttaaaga attttcaata tcaccaatat aaaatgctat ataacttgca attaaagaaa
      181 tgtaaggata atttttattt gcaaatttaa gataatttct ccattccatc tcaaattcca
      241 ttttataaaa tttagaaaac aataattcta taaatccata ttttttttca aaaaaaatat
      301 ttttaatttc acattcggct ttaacaacat caagttcaaa tagtaaatca attattttaa
      361 tcttaaacga gagatttttt ggatcatatc taaaaccctt tcttaaaatt tttattaaac
      421 attccttatc tttatctata tttcgtccaa taacatataa atacatacaa cttgctgctt
      481 tataacttct attagttttt acgcttctta aattatcgct taaaatctga tattgttcat
      541 catatgtaaa ggtatctaaa attgcctctt gcttcttaca ttctcctaaa aatccagcta
      601 atatcctaaa agtagaccat tgagaaccat agatatatct tgatttagat aatagttgaa
      661 aattaaaaaa aatattttct tctatagata aatatttcgg ggtcaaatct ttagaaaaat
      721 aaagattttc taaattatac tgattataga taagattttt tttaatcatt tcaacagctt
      781 catcatcatc tgaaaatacg ataattttaa ttttttgacc taaaagcatt ttaatcaatt
      841 gtgttaccaa ctccaaagga tataaataag tccataagct actcattatg aacaatctat
      901 gttctccatt aacaatatct ccacctctta tatgtatagc cacaaaatga ttattcaatt
      961 tatgataaat attctcaaca atatttttta tatttaaata cttgtaggaa aattgtaatt
     1021 tattccaaat ttgtcgtagt ttatattgat attcttgtat atcaatatca aaaattaatt
     1081 cataaagcgg aatacaacat gtaaccaaat gaccataatc ttcataaaaa ggtaattttt
     1141 gaatattttt taaagacaag gggcctaaac agttatcata actatgagtt tgtggcaaac
     1201 gactacaagt ataagagtga ttttgaataa aatttttatc aaatatattt tcctcagaat
     1261 caatagttat atatttttta gaaatcatgc caccaacatc atcaaatctt ggccatacaa
     1321 aaccgaattt aaatccagtt ttttttgcaa tatacatagc atttaaaaaa gcccatattc
     1381 ttgaagcaaa tccatctggt ctgttggata caatcaagcc taaaaatttt gttactagaa
     1441 ttttcatatt agatcttgta atgtaaaaat tatctttata attcaattta atatatttaa
     1501 aatatattgg gatatttatt tcaataataa tttttaaatc tttatcaata taatatttat
     1561 actctatttt tttccattct atggaattta tagaaatcaa aacaataagc ttcttaatat
     1621 caaaatcaac cctttctaac acaagatatc ttaaacagta tttcttttta gaataaatta
     1681 ataattgtga agtttgttcg cttgcaaaat attttaatcc aaaagacttc atggctaaat
     1741 aatttgttat atcaattaaa tcattttttt tataaaacat cttttatctt ttatcttttt
     1801 ttattttcct ataaagaata aaagctctat agggcaacaa taataaataa cctttatacc
     1861 aacctttaaa actttcaata attaactttc caagttgata agacaaataa tttctaatgc
     1921 tacaactttg attataatca tccaattttt ctatctcaaa taagaacgat ttgaaatatg
     1981 ctttttcatt tttagattcc caaagaaaat attttataat aattggaatt tcaacaaaat
     2041 cttttaaatt tttacattcc aatagaattt tacccaactt gtaacttaaa tgatttttta
     2101 caattaatac ggcactattt gatataagat cttttttttg atagcaagaa aaaaaacatt
     2161 gtgtatcaac ttctaaatca ttaaaatatt tttgataatt tttatacatc ttatacattc
     2221 taacaaattc tccataatga taatttaacc atatgccaac ataatttatc atgggatata
     2281 tctttgtgga tcgaaaagaa ataaaacaat cctcttgttc tttataaatt ctcatagatt
     2341 tagagataat aaaagtttga agtaaattat ttaatttatt actatcaagc aatactttca
     2401 aaaaagtttc tatagcttca agatcgccaa gtaaaaaaca acaatatatg taatgaatac
     2461 cccaagcatc attatcctga tctaactcca tagctttttt aatatagttc agagataagt
     2521 caagtgttaa atttaaaatt ctagaaagct tatataattg aaaataagcc atagaatcat
     2581 ataaactatc taaacctaat agtcctaaat tacttttaat tatttgatac tgttgcttca
     2641 aggaaaatat ttcgtggtaa gaaataatat ttttcctgcc tgcaatcatc attgcgcatt
     2701 gagagaatgc tgatttttga gcctgaatac ctggtgtata aatctttaat gcatgagaca
     2761 tcaaattcat ttcaaagaat gttcgttcaa aaatat
//
LOCUS       DARGBD010000135         2788 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.135, whole genome shotgun sequence.
ACCESSION   DARGBD010000135 DARGBD010000000
VERSION     DARGBD010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2788
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.135"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..853)
                     /locus_tag="SFZ04_001728"
     CDS             complement(<1..853)
                     /locus_tag="SFZ04_001728"
                     /inference="COORDINATES: protein motif:HMM:NF024991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8065961.1"
                     /translation="MQELSKELECFLEQSGMKPSALARAIGASASLISQIKSASYKGD
                     VALWSKKIRDFIANHKDKQNEKPKKEQLFRSRDFSMATFVMSEAVNEKEIALIFGEAG
                     TGKTTIINEFIKTRPQSILIEATCHTSVGVMLDELLNALKIEANSNNASKLKAIARFL
                     KTNEKILIVDEAEYLPLKALEDLRRIADFARVPLILVGTEILYKNLMGKNKELKQLYS
                     RICGKWMMRGLSKEESDEFFGKGYFKFSNGNFRSSAKLLKKALRLAELEECEINDELL
                     TSASEMVI"
     gene            complement(942..>2788)
                     /locus_tag="SFZ04_001729"
     CDS             complement(942..>2788)
                     /locus_tag="SFZ04_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HEG8065962.1"
                     /translation="QEFLSKALNDDVLLKNSKALQVQNTDKTKLSENQIQINKDSLSL
                     FAKASSKKQNLALQKAAVVKEWLHAKGKISTNDFINYINAKKIYEFKLTQNKLFAWQK
                     EYLANGLDALIDKRENKKDDAISALGIKELFINTLLAQKGRLNASNIHRVLNYELAKN
                     GKLDLKDFLGKKDEFISYECVLRSMKKYLKENKLIKNIILHGEDGAISRHLPALGVSN
                     WKVSTINEIVEIDASPLDAICKVDFINETYGLKGDECSWHKRYTIISLIDTYSGVASF
                     YLGFSEDSLSIARAIAKYISTYGVPKCIHSDNGKAFLSKNVKALLERLNIDYKAMPAY
                     SGWSKPYVENKFKDLQNSLTANLVGYIGSNVKERQAIEFFYSKKERRLKKGYKTNQRR
                     LKTLEYMRECIDDYSAYFMNNKWLDRLGATPKESFEAKISDAISIDELSLSMYLGGEL
                     KLRKVLNKGLSLNGTLFYNPKLYTHEEVFVCENLNNQNEIFCFDKQKELICVANNLDL
                     ELGVSIEEAKVARKLVNRAIKANKDKIDEQRMILEKNMEKYLALGKEKLEKVKSPKTK
                     ASNNAKKELEFSKALVSNGDFEHLSTKVIKDTKCKIPKWENAAKKAGY"
BASE COUNT          778 a          519 c          374 g         1117 t
ORIGIN      
        1 atataaccat ctcgcttgca ctagttaata actcatcatt tatttcgcac tcttcaagtt
       61 ctgcaagtct taaggccttt tttaaaagct ttgcagagct tctaaaatta ccattgctaa
      121 atttaaaata gcccttgcca aaaaactcat cactttcttc cttgctaagt cctctcatca
      181 tccatttacc acaaatcctt gagtaaagtt gtttaagctc tttgttttta cccattaggt
      241 ttttgtataa aatctcagtt cctactaaaa taagaggcac tctagcaaaa tccgcaatgc
      301 gtcttaaatc ctccaaagcc tttagtggta gatattcggc ttcatctacg attaaaatct
      361 tttcattggt ctttaaaaat cttgcaattg cttttagttt tgaagcattg ttgctatttg
      421 cttcgatttt aagagcattt aaaagctcat caagcattac acccacactt gtatgacaag
      481 ttgcctctat taaaatactt tgtggtctgg ttttaataaa ctcgtttata atagtggttt
      541 ttcctgttcc tgcttctcca aaaataagtg cgatttcttt ttcatttaca gcttcgctca
      601 ttacaaaagt agccatagaa aaatcacggc ttctaaaaag ttgttctttt ttaggttttt
      661 cattttgctt atctttgtga ttagcgataa aatctcttat ctttttactc cataaagcca
      721 catcaccttt atagcttgca cttttaatct gtgagattaa agaagcactc gcaccaatcg
      781 ctcttgccaa tgcacttggc ttcataccgc tttgctctaa aaagcattct aattctttgc
      841 ttagttcttg catataaatc cttttgtttt taagcttttt taaaagcttt taaaaacttt
      901 caaagcgtgt ttaaatagac tttaaaagct tttaaagact tttaataccc tgcctttttg
      961 gcagcatttt cccattttgg aattttgcat ttggtatctt ttataacttt tgtactcaaa
     1021 tgttcaaaat caccattgct aacaagggct tttgaaaatt caagttcttt tttagcgttg
     1081 ttactagctt ttgtttttgg gcttttgact ttttctagtt tttccttgcc aagagctaaa
     1141 tacttttcca tattcttttc taaaatcatt ctttgctcat cgattttgtc tttatttgct
     1201 tttatggctc tatttacaag ttttctagca actttagctt cttcaatgct taccccaagt
     1261 tctaaatcta agttgtttgc tacacaaata agttcttttt gtttatcaaa gcaaaagatt
     1321 tcattttgat tattaagatt ttcacacaca aacacttctt catgggtgta taattttgga
     1381 ttataaaaaa gagtgccatt aagacttaat cctttattta acacctttct aagttttaat
     1441 tcaccgccta aatacatact aaggctaagc tcatctatac taatggcatc gctaatcttt
     1501 gcttcaaaac tttcttttgg agtggcacct agtcggtcaa gccatttgtt attcataaaa
     1561 tacgcactat aatcatcaat gcactctctc atatactcaa gtgttttaag tcttctttga
     1621 ttagttttat agcctttttt aagtcttctt tcttttttag aataaaaaaa ctcaatggcc
     1681 tgtctttctt taacattaga tcctatgtat ccaactaagt ttgcagtgag tgagttttgt
     1741 aaatctttga atttattttc tacataaggc ttactccagc cactgtaagc tggcatcgct
     1801 ttataatcaa tgtttaatct ctctaaaaga gctttgacat ttttacttaa aaatgccttg
     1861 ccattatctg agtgtatgca ttttggaacg ccataagtgc tgatgtattt tgcaatggct
     1921 cttgctatgc ttaaactatc ttcactaaag cctagataaa agctagccac accactataa
     1981 gtatcgatta atgatattat agtgtagcgt ttatgccaag agcactcatc gccttttagc
     2041 ccataagttt cattgataaa atctacttta caaatagcat caagtggact tgcatcaatt
     2101 tctacgattt cattgatagt agaaactttc caattactca caccaagtgc tggtagatgt
     2161 ctgcttatag ctccatcttc accatgcaag atgatatttt ttataagttt gttttctttt
     2221 aagtattttt tcatacttct taaaacacac tcatagctta taaattcatc ttttttgcct
     2281 agaaaatctt ttaaatctaa cttgccattt tttgctaatt cataatttag cactctgtgg
     2341 atattagaag cattaagcct tcctttttga gcaagtaagg tatttataaa aagctctttt
     2401 ataccaagag cactaatggc atcatctttt ttattttctc ttttatctat taaagcatca
     2461 agtccgtttg ctaagtattc tttttgccaa gcaaagagtt tgttttgtgt gagtttaaac
     2521 tcatagattt ttttagcgtt aatgtaattt ataaaatcat ttgtgcttat cttgccttta
     2581 gcatgtagcc attctttaac cacagcagct ttttgtaagg ctaaattttg ctttttagaa
     2641 ctggcttttg caaagaggct taagctatct ttgtttattt gtatttgatt ttcgctaagt
     2701 ttggttttgt cagtgttttg cacttgtaaa gctttagaat ttttaagcaa aacatcatca
     2761 tttaatgctt tgcttaaaaa ttcttgtg
//
LOCUS       DARGBD010000136         2728 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.136, whole genome shotgun sequence.
ACCESSION   DARGBD010000136 DARGBD010000000
VERSION     DARGBD010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.136"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            14..991
                     /locus_tag="SFZ04_001730"
     CDS             14..991
                     /locus_tag="SFZ04_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEG8065963.1"
                     /translation="MVRKPKFKLIAKGEDITEKLSKNLISISYEDKEKAESDEISLSV
                     FGLYSKPLFGDSLELWLGFEKLYKCGSFSVNVVSKNYTSNTTEVRASAINFSGKGSVN
                     IKEKKTRSFENTTLFTIARKIANENNLKIKTSGEDQNIVSILQNNQSNLEFLYSICFD
                     YGFICCVKENTLIITPKDGKIGDNAANITSKNENLPLFEIALKECISLEISESARNEY
                     SAVIAEWQDINEAKIKSIKVGSGENIYKMQISQPKNDNEAFKKAQAKLNELQKGGLNG
                     RCELIGREIRAGGKLKIKDINMDHYEFSIKSVSHSFNDQAYIISVEFES"
     gene            complement(988..1272)
                     /locus_tag="SFZ04_001731"
     CDS             complement(988..1272)
                     /locus_tag="SFZ04_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEG8065964.1"
                     /translation="MLSNNEYFEYFIDFVKNNDKREILKEFGGANIYIPSYKTLLRDE
                     ELKQDFKTLIKQGISTKNASVECAKKYDLSLNAVYLITKELRENLEPSLF"
     gene            1366..2037
                     /locus_tag="SFZ04_001732"
     CDS             1366..2037
                     /locus_tag="SFZ04_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HEG8065965.1"
                     /translation="MKKIISVLILALSLLNAKSFEESKKELVKFYNDLGSSYWYDFYC
                     QAPFKVNKKGKYISFEVIKSDLYAPRNEYTKKGKINQRIKRIEWEHIMPAQNFGKHLP
                     CWKEGGRKACKNDPTFAKMEADKQNLVPAIGEINGDRSNFRYAEAPTNLKYTQYGNCK
                     VYTDFKAKRFYPANYSKGWITRSYLYMSKTYNIRLSDQERKLMEAWDKQYPMDEKEKR
                     IRALL"
     gene            complement(2029..2304)
                     /locus_tag="SFZ04_001733"
     CDS             complement(2029..2304)
                     /locus_tag="SFZ04_001733"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065966.1"
                     /translation="MILEIHSYDAEFFLTLGIEKHSQIAFAAKRTSLEIMHNGITHQI
                     KTDKDFGILLNVVCNIREKLDESFEEEDKSLVIDIDEIVAKVCKELE"
     gene            complement(2351..>2728)
                     /locus_tag="SFZ04_001734"
     CDS             complement(2351..>2728)
                     /locus_tag="SFZ04_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HEG8065967.1"
                     /translation="SDDESYRWVLNQRYGKASSKDLSIDELRDFAITLGYDEKFLKKQ
                     NTKKARYFKKENTKSGRATKKQLNMIQAIWSKNAKNPTQWALREFINNIVKKRPLHLW
                     YLSIEDANKVILGLKNLENNSTH"
BASE COUNT         1003 a          370 c          445 g          910 t
ORIGIN      
        1 aggaaaaggc tttatggtaa gaaaacctaa gtttaaactt attgccaaag gtgaggatat
       61 cacagaaaaa ctttctaaaa atcttattag tattagttat gaagataaag aaaaagctga
      121 aagtgatgag ataagtttaa gtgtttttgg gctttattcc aagccacttt ttggggatag
      181 tttagagctt tggcttggct ttgaaaagct ttataaatgt ggaagcttta gtgtgaatgt
      241 agtgagtaaa aactatactt caaatactac tgaagttaga gcaagtgcta ttaattttag
      301 tggaaaaggc agcgttaata taaaagagaa aaagacaaga agctttgaaa acactactct
      361 ttttaccata gcaagaaaaa tcgcaaatga aaacaatcta aaaatcaaaa caagtggaga
      421 ggatcaaaat atagtaagta ttttacaaaa taatcaaagt aatttagaat tcttatatag
      481 tatatgcttt gattatggtt ttatttgctg tgtaaaagaa aatactttaa tcattactcc
      541 aaaagatggt aagattggcg ataatgctgc taatatcaca agcaagaatg aaaatttacc
      601 tttatttgaa atagctttaa aagaatgtat ttcattagaa atttcagaaa gtgctagaaa
      661 tgaatatagt gccgtaatag cagaatggca agatataaat gaggcaaaga taaaaagcat
      721 aaaagtagga agtggggaga atatatataa aatgcaaatc tcacaaccaa aaaatgataa
      781 tgaagctttt aaaaaagcac aagcaaaact caatgagctt caaaaaggtg gattaaatgg
      841 aagatgtgag cttattgggc gtgaaataag agcaggtgga aaacttaaga ttaaagatat
      901 taatatggat cattatgaat ttagtattaa aagcgtgagt catagtttta atgaccaagc
      961 ttatataatt agcgtggagt ttgagagcta aaacaaactt ggttctaaat tttctctcaa
     1021 ttctttagtg attaaataca ccgcatttaa acttaaatcg tattttttag cacattccac
     1081 acttgcattt ttagtgctta ttccctgttt tatgagtgtt ttaaaatcct gttttaattc
     1141 ttcatctcta agtaaggttt tatagcttgg tatgtaaata tttgcaccgc caaattcttt
     1201 taagatttct cgtttgtcgt tatttttcac aaaatcaata aaatattcaa agtattcgtt
     1261 attgctaagc aatgctagtc ctatttgagt gtttttgcaa attatagcaa aaaagttaaa
     1321 ttttatttag tagggtataa ttttaaaaaa taaaaaggag aataaatgaa aaaaataata
     1381 agcgttttaa tacttgcttt aagcttatta aatgctaaaa gttttgaaga aagcaaaaaa
     1441 gaattagtaa aattttataa tgatctaggg agctcttact ggtatgattt ttattgtcaa
     1501 gcacctttta aggttaataa aaaaggaaaa tatattagtt ttgaagtgat taaaagtgat
     1561 ttatatgctc ctagaaacga atacaccaaa aaaggaaaaa ttaaccaaag aatcaaacgc
     1621 atagaatggg agcatattat gcccgcccaa aactttggaa agcatttacc ttgctggaaa
     1681 gaaggtggca gaaaagcttg taaaaatgat ccaacttttg caaaaatgga agccgataaa
     1741 caaaacctag ttccagccat aggagagata aatggggata gaagcaattt tagatatgct
     1801 gaggctccta ctaatttaaa atatactcaa tatggaaatt gtaaggttta tactgatttt
     1861 aaagcaaaaa gattttatcc tgcaaattat tctaaaggct ggattacaag aagctattta
     1921 tatatgagca aaacttataa tatcagatta tccgaccaag aaagaaaact tatggaggct
     1981 tgggataaac aataccctat ggatgagaaa gaaaaaagaa ttagagcatt actctaattc
     2041 tttgcaaact ttagccacaa tttcatctat atcaataacc aagcttttat cttcttcctc
     2101 aaaactctca tcaagttttt ctctgatatt acaaaccaca ttaagcaaaa tcccaaaatc
     2161 tttatcagtt ttaatctgat gagtgattcc attatgcatt atttcaaggc ttgttctttt
     2221 tgcagcaaag gcaatttgtg agtgtttttc tatgcctaag gttaaaaaaa actctgcatc
     2281 gtaagaatgt atttctaaaa tcattttaat ctccttttgt tttgatgaga caacattagc
     2341 ttcgtttggc ttaatgtgtg ctgttgtttt ctaaattttt aagccctagg ataactttat
     2401 tagcatcttc tatacttaaa taccaaagat gcaaaggtcg cttttttaca atattattaa
     2461 taaactctct taaagcccac tgagtaggat ttttagcatt tttactccaa atggcttgta
     2521 tcatattaag ttgctttttt gtagcccttc cgcttttagt gttttctttt ttaaaatacc
     2581 ttgctttttt ggtattttgc ttttttaaaa acttttcatc atagcccaaa gttatagcaa
     2641 agtccctaag ttcatctatg cttaaatcct tacttgaagc tttgccatat ctttgattta
     2701 aaacccagcg atagctttca tcatcgct
//
LOCUS       DARGBD010000137         2449 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.137, whole genome shotgun sequence.
ACCESSION   DARGBD010000137 DARGBD010000000
VERSION     DARGBD010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2449
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.137"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..657
                     /locus_tag="SFZ04_001735"
     CDS             <1..657
                     /locus_tag="SFZ04_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065968.1"
                     /translation="NSRFMSFDLSEFIFGSLLCTGGLNYYPSIACATTSSEAREFALK
                     RLLSYIILDEKRSAFKEDKINEGKYILNDKEFFEKNNIELRNCNIYKLEHFQRKEEYK
                     TQHPVIKQHPILAYNDAIQILYEYANGIYNTTQDEKGKFIEDRQKARRLMENLEAIGQ
                     HNLEVMYKGINEEYVKNKRKNEYDEEESDDTNKSQDYSNKFIGRLATTIIMEDGLYIG
                     "
     gene            668..1960
                     /locus_tag="SFZ04_001736"
     CDS             668..1960
                     /locus_tag="SFZ04_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065969.1"
                     /translation="MSETYEIYTSNGLILEVDKNTNQIIFDKREDGREVGKYTQEYSK
                     ALFEAHNIKQNSPYKDYKPQYLDPNLYTGQSSTLLEFKDWQSIYLKDPIKGAIAPWTK
                     AEKAYYKSLKTKRERYKYLVIRSGIRSVVIDIPYEAIGAVDEKGNVDPKYEKLYRIVD
                     DNKHNLRSSLFHNEWGMAAGILGDYKYLANDMFQNGFNARFIQATILYIQLSGGSSIL
                     DKPHLLGAIYGYADIAVGSGLVGVHKNPLREQEIKTLAKTLKPDEFGMLPFIDEIMGV
                     DWVIDYNKYRIARDEFGSMYKALRSDIVEGKIKDPRDIDSTYESRREFDHHRGGYYNG
                     MVNAYGYDIPNDRSEESAQLRIDSMILTAKLAALTPPQGYPNAPYYFTPENLEWYYKR
                     HKLDKLLDPRIPAIYRYNFPRELRAKILAYAKEHNIKE"
     gene            1983..>2449
                     /locus_tag="SFZ04_001737"
     CDS             1983..>2449
                     /locus_tag="SFZ04_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065970.1"
                     /translation="MQKILQIDLEKRKALENFKNLALLGLGGTMLLNLKEQALDFSQE
                     LTYINTYDKYLNLKLDSFYIPSTLLSLLQLTKKSKEAFYINVLINSNTHYKNPLLQYA
                     ITQKQEQENIVYALKNNENLNTSFANLNALKLALEEKNFYLNFIDLNSKESLL"
BASE COUNT          990 a          291 c          410 g          758 t
ORIGIN      
        1 aattctagat ttatgagttt tgatttatct gagtttattt ttggttcttt attatgcacg
       61 ggtgggctta attattatcc tagtattgct tgtgctacaa cttcaagtga agctagggaa
      121 tttgccttaa aaagactttt atcttatatt attttagatg aaaaaagaag tgcttttaag
      181 gaagataaaa tcaatgaagg caaatatatc ttaaatgata aggaattttt tgaaaaaaac
      241 aatatagaac ttagaaattg taatatatat aagctagagc attttcaaag aaaagaagag
      301 tataaaacac aacacccagt gataaaacaa caccctatct tagcttataa tgatgctata
      361 caaattttat atgaatatgc aaatgggatt tataatacca ctcaagatga aaagggtaag
      421 ttcatagaag ataggcaaaa ggcaagaaga ttgatggaaa atttagaagc cataggacaa
      481 cataatttgg aagtgatgta taaggggata aatgaagaat atgtaaaaaa caaaagaaaa
      541 aatgaatatg atgaggaaga aagtgatgat actaataaat cccaagatta ttctaataag
      601 tttataggca gactagccac tactataatc atggaagatg gtttgtatat aggatgaaag
      661 gataaaaatg agtgaaactt acgagattta tacttctaat ggacttatat tagaagttga
      721 taaaaatacg aatcaaatta tatttgataa aagagaagat gggcgtgaag taggcaaata
      781 cacccaagaa tattccaaag ctttgtttga agcacacaat atcaaacaaa actcccccta
      841 caaagactat aaaccccaat acctagatcc taatctttat acagggcaaa gttctacttt
      901 acttgaattt aaagattggc aaagtattta tttaaaagat cctataaaag gagctatagc
      961 tccttggact aaagcagaaa aagcttatta taaatcttta aaaactaaaa gagaaagata
     1021 taaatattta gttataagaa gtggtataag aagtgttgtt atagatatac cttatgaagc
     1081 tataggagct gtagatgaaa aaggaaatgt agatcctaaa tatgaaaaat tatatagaat
     1141 agtagatgat aataaacata atctaagatc aagtttattt cataatgaat ggggtatggc
     1201 agcaggaata ttaggtgatt ataaatacct agctaatgat atgtttcaaa atggttttaa
     1261 tgcaagattt atacaagcta ctatacttta tatacaatta agtggaggaa gtagtatatt
     1321 agataaacct catttattag gtgctattta tggttatgca gatattgctg taggaagtgg
     1381 tttagtagga gtgcataaaa accctttaag agaacaagag attaaaacct tagctaagac
     1441 tttaaaacct gatgaatttg gtatgcttcc ttttatagat gagattatgg gagtagattg
     1501 ggtgattgat tataataaat atagaattgc tcgcgatgaa tttggaagta tgtataaagc
     1561 cttaagaagt gatatagttg agggcaaaat aaaagatcca agggatatag attctactta
     1621 tgaaagcaga agagaatttg atcatcatag gggagggtat tataatggca tggtaaatgc
     1681 ttatggttat gatattccaa atgatcggag tgaagaaagt gcacaattaa gaatagattc
     1741 tatgatatta actgccaaat tagcagccct aactcctcct caaggctatc ctaatgcccc
     1801 ttattatttt acccctgaaa atctagaatg gtattataaa agacataagc ttgataaact
     1861 tcttgatcca agaattcctg ctatttatag atataatttc ccaagggaac ttcgagctaa
     1921 aatactagct tatgctaaag agcataatat aaaagagtaa accacaaaag aaaggaaaaa
     1981 caatgcaaaa aatacttcaa atcgatttag aaaaaagaaa agctttagag aatttcaaaa
     2041 atctagcttt attaggatta ggtggaacaa tgcttttaaa tttaaaagaa caagctttgg
     2101 attttagtca agaattaact tatataaata cttatgataa gtatttaaat ttaaagcttg
     2161 attcttttta tatcccttct acacttttat ctttgcttca attaactaag aaaagcaaag
     2221 aagcttttta tatcaatgtt ttaatcaata gcaatacaca ttataaaaat cctttattac
     2281 aatatgctat tacccaaaaa caagaacaag aaaatatcgt ttatgcttta aaaaataatg
     2341 aaaatcttaa tacttctttt gcaaatctta atgctttaaa attagcctta gaagaaaaga
     2401 atttttatct taattttata gacttaaaca gcaaagaaag tcttttaag
//
LOCUS       DARGBD010000138         2365 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.138, whole genome shotgun sequence.
ACCESSION   DARGBD010000138 DARGBD010000000
VERSION     DARGBD010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.138"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..794)
                     /locus_tag="SFZ04_001738"
     CDS             complement(<1..794)
                     /locus_tag="SFZ04_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG8065971.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENKHYAKLEY
                     EQNVSILPQFTYNINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGSPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKK"
     gene            843..2186
                     /gene="pif1"
                     /locus_tag="SFZ04_001739"
     CDS             843..2186
                     /gene="pif1"
                     /locus_tag="SFZ04_001739"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HEG8065972.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
     gene            2196..>2365
                     /locus_tag="SFZ04_001740"
     CDS             2196..>2365
                     /locus_tag="SFZ04_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065973.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGANVLKKVEISL
                     EFDGNNLKENEN"
BASE COUNT          888 a          252 c          356 g          869 t
ORIGIN      
        1 tattttttag aacctatttt tccataaaaa tagtttttat cttctttgta gtaaggatag
       61 atagcaccaa ttctactttc aaagaaaaat ttaccatcct cgctatagat agcaaatttt
      121 tcttttagtg gtgtgataaa gttgagattt tcatagattt tcgctctatc gtttgagaaa
      181 aattccaaat ttttactttc aacaaatcca aatccagctt cacctaaaac aaaagcataa
      241 cgcttatctt tactaaaatg tgaaattaag acaggggatc cagtatttaa aatgccatcg
      301 cttgcatagt caaaaggaat tccttcattt tcaaaaaaag gattttttaa gatagctctt
      361 tgggttggaa gatttttaat gattgtattt tggataatca aagctttttg attaagtttg
      421 ccaaattctt ggatatttgc gttatttata gcatttttaa accatgaaag cggaataatt
      481 tgtttattga aaaaataata agtatttttt gaatttaaat ataaaggaaa ggaccaaaaa
      541 atattttgtc ctttgtagtt tttaaatgaa tcatgccaag ggttaaagaa atatttttta
      601 tatcgttttg catcaaaatt aatattgtaa gtaaattgtg gtaaaatgct tacattttgt
      661 tcgtattcaa gttttgcata atgtttattt tcattttttt gttctaaatt ttcatgatga
      721 agcgaagtta aattttttgt tgaacaagct gttaaaaata gcactataaa agtaaaatat
      781 aaacaagatt tcataatcaa ccttttagaa aaaatagtta taattaaagc taaggaaata
      841 taatgcttga taaactagaa aaaattttag cttatgataa tgttttttta agtggtggcg
      901 ctggagttgg taaaagcttt ttgacaaatg agcttatcaa atcttataga aaacaaaaaa
      961 aattagccat agctcttggt tctagtgctc tatcggcatt taatataggc ggtgttactt
     1021 tacacagctt tttttgttta gggtattgtg atgatatgat gaaattaagt gcattggatc
     1081 gcaatcaaaa acaaaaagaa aaattaacaa aacttaaaga gcttttaaaa acgattgagc
     1141 ttattattat cgatgaaatt tccatggtta gcgcaaatgt ttttgaaatg ataggcttta
     1201 gacttaaaaa ttctcaattt aatggaaaaa ttttagttgt tggagatttt tttcaactgc
     1261 ctccagtaat taaagaaaaa aaagaaactt tatttaacca ttcttattat gctttttctt
     1321 catttttttg gcaagattta aattttaaga atattaaact ttctcaacct aaaagaacgc
     1381 aaaatatgga attttataac catttatctt tgattagaca aggtttttta gatgaaaaaa
     1441 ttttaagctt ttttgaatct ttgcgaattg attataaaga attagaaaat ttagaagatg
     1501 attatacttt actttgtggt atcaataaaa aagtaaacaa tatcaatcaa gaaaaattaa
     1561 gcaaacttga gaccccgctt gtatgcttta aggctcaggt taaaaaagaa gataagagaa
     1621 taaaagatga agagcttgat tcttggatta gaagcttaaa tatattggaa gaattaaata
     1681 ttaaaatagg cgctcgtatt attttttgcg taaataattg ggataagaat tattataatg
     1741 gagagcaagg cattatagaa gatattcttt atgaagagga gaaaatttat attagcatta
     1801 ttaaaaataa tgggatgaaa attttacttg aaccttatac tttttttatg gaagaacttg
     1861 agcaatcagg taaagatttt gttgttaata ttctcgcaag tgttacacag tttcctatta
     1921 aattagctta tgctattact atacacaaat cacaaggtat gagtattgaa aaattagtgt
     1981 gtgatattga tcatattttt gaaaatggac agctttatgt cgctctttct cgcgctacaa
     2041 acccaaatac tttaaaaatt tattctacaa aaaagataaa ttttggattt tattttgcta
     2101 atattttaaa aatagattct aatgtgattg aattttataa aaaacataat tttttagatc
     2161 tcgaaataca agaacaaatc atttaaaggc attaaatgaa aaaaatattt ttaagtgttt
     2221 ttttggtttt gagtttaaat gctcaaaatc ttgaaataga taaaataaga acagatttgt
     2281 attctaaaag tggagcaaat gttcttaaaa aagttgaaat ttctttggaa tttgatggga
     2341 ataatttaaa agaaaatgaa aataa
//
LOCUS       DARGBD010000139         2334 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.139, whole genome shotgun sequence.
ACCESSION   DARGBD010000139 DARGBD010000000
VERSION     DARGBD010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.139"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>2334
                     /locus_tag="SFZ04_001741"
     CDS             <1..>2334
                     /locus_tag="SFZ04_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065974.1"
                     /translation="IKESNYFEQEIKPKIQLTLDTLFNTLLKNITQSNDDEYKQIIRA
                     IAKFFINILDSVTNLKKPVSLVKKNPYVFVVNTLFEAYNSSAEYQEYKEQKYYYDFAY
                     PLLELITSKLYPIIALCNEEILSDVLIIDDKVLLDFSSYSNVPSISLYKNSFYKVILD
                     EEFQGIFDNFLENNLKFENEKLDNTLLVNSSLNNFDTTLKKAINLNISKLNHFFYAEY
                     PDLNSSMLVEMILDKKNTDQINTTKMGKNYLLITNPPQLNNAGLCEDLYQKKLGAIIK
                     NRPKSLTKNEKLGLKEQFPSKRDYGSYFIERDVKKEDDYVLQLCPFVKLDGQIYQKYK
                     GYFNFYNQTYSWVKLYLLEYINERLEYEKVKQDFAYIDSFFKLPKELEEISEKEKEKV
                     KEYVELFNNYLDNINSRYDQTQSNLNSKPLMFKTYENVDFKKYSPLTVVLLTLTLYVL
                     QKDLAFTQEYSLGYKLFQANIGNYQKIKIPNYFNEYISFIPDDIYFYDNDKKIYIFLS
                     KELNKNKKEDEVIYLDELAKAMFENDFEEEDQTYVNFLKTLNESFDEEIEFEENIQTD
                     KTLPSKKDLDKSIQDIMLDKELAKLSIDITFFNIIKQLFPFTEFFMSQPDFFKKMILF
                     FIDSSLDKKYYGNKLFSSFKAHFFKELGIFYALSPKGRFIKINPKSKKSLNKLFLYQI
                     GTNYYYFNQLEYASKLKKSKSFSRLDKAKQIHLISKVKKQLAIDFSIKMSKDLSVDIL
                     KSLAGSFIDTLLPTNYERLKILYEKLMYEKFTYNYDFP"
BASE COUNT          945 a          256 c          287 g          846 t
ORIGIN      
        1 tatcaaagaa tctaactatt ttgagcaaga aattaaacca aagatacaac ttaccctaga
       61 tacacttttt aatacacttt taaaaaatat tactcaatct aatgatgatg aatataagca
      121 aattattaga gctatagcaa aattttttat caatatatta gattctgtaa ccaatcttaa
      181 aaaacctgtc tctttagtca aaaaaaatcc ttatgttttt gttgtaaata cattatttga
      241 agcttataat tcttctgctg agtatcaaga gtataaggaa caaaaatatt attatgattt
      301 tgcttatcca cttttagagc ttattactag taagctttat cctattatcg ctttgtgcaa
      361 tgaagaaatt ttatccgatg tattgattat agatgataaa gtattattag atttttcatc
      421 ttattctaat gtaccttcta ttagtcttta taaaaatagt ttttataaag ttattttaga
      481 tgaagaattt caaggtattt ttgataattt tttagaaaat aatctaaaat ttgaaaatga
      541 aaagttagat aatacacttt tagtgaattc tagtttaaat aattttgata caacattaaa
      601 aaaagcaatc aatttaaata tctctaaact caatcatttc ttttatgcag aatatcctga
      661 tttaaattct tccatgctag tagaaatgat attagataaa aaaaatactg atcaaatcaa
      721 tacaaccaaa atgggtaaaa attatttgct tattactaat ccaccacagc ttaacaatgc
      781 aggactttgt gaggacttgt atcaaaaaaa attaggagca ataataaaaa atcgcccaaa
      841 atcccttaca aaaaatgaaa aacttggatt aaaagaacaa tttcctagta aaagagatta
      901 tggctcttat tttatagaaa gagatgttaa aaaggaagat gattatgtat tgcaactttg
      961 tccttttgtg aaacttgatg gacagattta tcaaaaatat aaagggtatt ttaattttta
     1021 taatcaaaca tattcttggg tcaaacttta tttattagaa tatataaacg aacgattaga
     1081 atatgaaaaa gttaagcaag attttgctta tattgatagc ttttttaaat tgcctaaaga
     1141 acttgaagaa attagcgaaa aagaaaaaga aaaagtaaaa gaatatgtcg agctttttaa
     1201 taattattta gataatatca attctcgcta tgaccaaaca caatccaatc ttaactcaaa
     1261 accattaatg tttaaaacat atgaaaatgt agattttaag aaatactcac ctttaacggt
     1321 tgttttattg actttgactt tgtatgtttt acaaaaagac ttagctttta cgcaagaata
     1381 ttctttggga tataaattgt ttcaggcaaa tattggtaat tatcaaaaga ttaaaatacc
     1441 aaattatttt aatgagtata tttcatttat ccctgatgat atttattttt atgataatga
     1501 taaaaaaatt tatatctttt tatctaaaga attaaataaa aataaaaaag aagatgaagt
     1561 tatttattta gatgaattag ctaaagctat gtttgaaaat gattttgaag aagaagatca
     1621 aacttatgta aattttttaa aaaccttaaa tgaaagcttt gatgaggaga ttgaatttga
     1681 agaaaatata caaacagaca aaactcttcc ttcaaaaaaa gatttagata aaagcattca
     1741 agatattatg cttgataaag aacttgcaaa attatctata gatattactt tttttaatat
     1801 cattaagcaa ctttttcctt ttacagaatt ttttatgagt cagcctgatt tttttaaaaa
     1861 aatgatttta ttttttatag attcaagctt agataaaaag tattatggta ataaattatt
     1921 ttctagtttt aaagcacatt tttttaaaga actagggata ttttatgcac ttagccctaa
     1981 ggggcgtttt ataaaaatta atccaaaaag taaaaaatca ctcaataagc tttttttata
     2041 tcaaatagga acaaattatt attattttaa tcaattagaa tatgcaagta agttaaaaaa
     2101 gtcaaagagt ttttcaagat tggataaagc taagcaaatt catttgatat caaaagtaaa
     2161 aaaacaatta gctattgatt tttctattaa aatgagtaaa gacttgagcg tggatatatt
     2221 aaaaagttta gcaggatctt ttattgatac acttttgcct acaaattatg aaagattgaa
     2281 aattttatat gaaaaactaa tgtatgaaaa atttacttac aattatgatt ttcc
//
LOCUS       DARGBD010000140         2229 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.140, whole genome shotgun sequence.
ACCESSION   DARGBD010000140 DARGBD010000000
VERSION     DARGBD010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.140"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            39..434
                     /locus_tag="SFZ04_001742"
                     /pseudo
     CDS             39..434
                     /locus_tag="SFZ04_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883939.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            588..1973
                     /locus_tag="SFZ04_001743"
     CDS             588..1973
                     /locus_tag="SFZ04_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065975.1"
                     /translation="MSNLIHIYDNHCDIFAKDRSVLDIKDIEEKYQIDFKSLDIKIFL
                     NSTLLTGSNELPNNPFYFGELDQDNTIKQDTPSYYFSPKDESSGKGRLSIFYKNDELC
                     LLNYSILENSLNIKLECLSKQSLEYKDLISNTLKEQKTTQVDKKQAIAKLHALLENQN
                     LECIHGGKVILKSNKGKTFKDDGVPIMLESDLLNSSIVACPNTIAGVSVPCTKVVNVK
                     GSLSQKKVNNEYVILQELISACKTDKGFALKVSFTPTKFKFDHSFDPKEGLGEQSKNQ
                     IELKEPIIRLHYKSDRFQKDNLPIYNLLINNEKKEQDKALNEFNIDLKDLKDIEDLNI
                     LNQFKQDFSKDYEFKELNLSFDTNLIKLYFIIPKNIAKVYKSAYKEFENKDLGAGYFT
                     QLHEYDKIIKNALEDNKELNEYHFSFLAPAKMQNLKLQIAQGLDEILEDEDRKQELYV
                     CKFVVVNGVKI"
     gene            1970..>2229
                     /locus_tag="SFZ04_001744"
     CDS             1970..>2229
                     /locus_tag="SFZ04_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065976.1"
                     /translation="MKIKNFTLIASNHNLEIELKNLTKNANKIIFICSDFDGYKEAKN
                     SLYKTLHTIEDNFKIDNTKTFKIIHLNQANKDEITKEQKFSS"
BASE COUNT          971 a          276 c          279 g          703 t
ORIGIN      
        1 tgatataata ttcatttatc ttaaatattt agaaaaaaat ggatagagaa ttatttataa
       61 caaggcttgc ttttataaac aatgatgaaa tagacacaat agataaaaat tcatccatag
      121 catacttaaa agccttatat caatgtgaaa attccatagc tataaattat aatcaagaag
      181 agcttttcac ccaagctacc gctataaaca atctaggcta taattctact ttcacaaaaa
      241 tcttcatcct agataaagaa aagctcaatg atacctatct tgatgctaga aaaaggcttt
      301 ataaatctat caatacttta aaagaaaaaa gaaatgaaaa aataaaagat atccaagact
      361 atttaaataa agaaatttcc ttacaagata atctaaataa tcaaagcttt aatactaagg
      421 aaaatgatgt taatttaatt ttaaacgaag tatttaacat agagcaattt tatgataaaa
      481 ataccaatac catagtatta aagacaaata atataaaaat catattctta gataaagtaa
      541 atttacaaga tttgcaagat aattctaaca atacttcttt catctctatg tcaaatttga
      601 tccatattta tgataatcat tgtgatattt ttgcaaaaga tagaagtgtt ttggatataa
      661 aggacataga agaaaaatat caaatagatt ttaaaagttt agatataaaa atcttcctaa
      721 actccaccct ccttacaggc tcaaatgaac ttcctaataa tcctttttac tttggagaat
      781 tagatcaaga taatactata aaacaagata cacctagtta ttatttttct cctaaagatg
      841 aaagcagtgg caaaggaaga cttagtatct tttataaaaa tgatgaactt tgtttgctta
      901 attattctat attagaaaat tctttaaata ttaaattaga atgtttaagc aaacaaagct
      961 tagagtataa agacttaatt tcaaacactt taaaagaaca aaaaaccaca caagtagata
     1021 aaaaacaagc tatagctaaa cttcatgctc ttttagaaaa tcaaaaccta gaatgtatcc
     1081 atggaggtaa agtcatactt aaatcaaaca aaggaaaaac ttttaaagat gatggtgtgc
     1141 ctataatgct agaaagtgat ttattaaact ctagtatagt agcttgtcct aatactatag
     1201 caggtgtaag tgttccttgt accaaagttg ttaatgtaaa aggatcctta tctcaaaaga
     1261 aagtcaataa tgaatatgta atcttacaag aactcatctc agcttgtaaa acagataaag
     1321 gctttgcttt aaaagtaagc tttactccta ctaagtttaa atttgatcac agctttgatc
     1381 ctaaagaggg cttaggagaa caaagtaaaa atcaaataga gttaaaagaa cctataataa
     1441 gacttcatta taaaagtgat agatttcaaa aagataattt acctatctat aatcttttaa
     1501 tcaataatga aaaaaaagaa caagataagg ctttaaatga atttaatata gatttaaaag
     1561 atttaaaaga tatagaggat ctaaatattc ttaatcaatt caaacaagac tttagtaaag
     1621 attatgaatt taaagaatta aatcttagct ttgatactaa tttaatcaaa ctttatttta
     1681 ttatcccaaa aaacattgct aaagtttata aaagtgctta taaggaattt gaaaataaag
     1741 atttaggagc agggtatttt acacagctac atgagtatga taaaatcatc aaaaatgctt
     1801 tagaagataa taaagaatta aacgaatatc attttagttt tttagctcct gcaaaaatgc
     1861 aaaatttaaa acttcaaatc gcacaaggac tagatgaaat cttagaagat gaagatagaa
     1921 aacaagagct ttatgtttgt aaatttgtgg tggtaaatgg ggttaaaata tgaaaataaa
     1981 aaattttact ttaattgcat caaatcataa tttagaaatc gagttaaaaa atcttaccaa
     2041 aaatgctaat aaaattattt ttatatgcag tgattttgat ggatataaag aagctaagaa
     2101 ttctttgtat aagacactac atactattga agataatttt aaaattgata atacaaaaac
     2161 ttttaaaatc atacatttaa atcaagccaa taaagacgaa atcacaaaag aacaaaaatt
     2221 tagctctga
//
LOCUS       DARGBD010000141         2096 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.141, whole genome shotgun sequence.
ACCESSION   DARGBD010000141 DARGBD010000000
VERSION     DARGBD010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.141"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..191
                     /locus_tag="SFZ04_001745"
     CDS             <1..191
                     /locus_tag="SFZ04_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8065977.1"
                     /translation="QVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGS
                     YAMSQANAVQQNVLKLLQ"
     gene            complement(222..>2096)
                     /locus_tag="SFZ04_001746"
     CDS             complement(222..>2096)
                     /locus_tag="SFZ04_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8065978.1"
                     /translation="NNFNKNLKALSGFEYNNLRKKLEDLKELREFTFTQGKDNLDINI
                     IKKRNLKKMYQDPIKELEKNLEYFKDFTRYPVLFFYGFGNGILYKILLQNQALKRIII
                     FEKELELIFLALNFIDFSKDLSLGRLIILHHDDINLPKMDKVFRLIGDLFYRSYNLHI
                     ANDFYEYYKEDILKLNKLNMQIIKNHNLMRGNDPKDAMQGIEQFVYNLPQMITHPSYK
                     ELLSKRKGISDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYV
                     CMLERDEIVAECFNNDFKDFDKDIIFLVASLVHKKTISYLKKNKRKYILIIKGQPFAR
                     CLGLDDYGYINAGMSVSHMAYELAENLGHNNIILIGQDLAYAKDGQTHSQGFIHANLH
                     NGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNCTEGGARIES
                     AIEKPFKELCENLLENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNFKKEC
                     KKVQKQIHNLTHGKNKLSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQSILTP
                     LYLKDIKDESDKQNKLFAWIYAHESLIENIIELLEAQDKRLKIAILPLQDFLEKKKAL
                     "
BASE COUNT          680 a          302 c          291 g          823 t
ORIGIN      
        1 ttcaagttac tataaacaac atcactgtta ctcaagtaaa cgttaaagca gctgaatcaa
       61 ccataagaga tgtagacttt gcagctgaaa gtgcaaattt ttctaaatat aacatccttg
      121 cgcaatcagg ttcttatgct atgagtcagg ctaatgcagt gcagcaaaat gttttaaaac
      181 ttcttcaata atttcttaga tgcttttatg catctaagct tttaaagtgc ttttttcttt
      241 tctaaaaagt cttgcaaagg taaaatagcg attttaagtc ttttgtcttg agcttctaaa
      301 agttctatga tattttctat caaagattca tgcgcataaa tccaagcaaa aagtttattt
      361 tgtttatcag attcatcttt gatatcttta agatataaag gcgttaatat actttgttca
      421 tgatgtaaag tagggcctaa aatttcttgt aaaaagagat attttttatt tgaaagtttt
      481 tctttgattt tgtctatatt ctggtttatt tgttcaagag agagcttgtt ttttccatgg
      541 gtaagattgt gaatttgttt ttgaactttt ttacactctt ttttaaaatt taaggataaa
      601 ttcatatttt ttttaatttt ttgatagatt tttaatccga gttttacttg ttctttagta
      661 tttaaaactt gtaatttttt aaatttttta tcttttttat tttcgagtaa attttcgcaa
      721 agttctttaa aaggtttttc tatagcgctt tctatcctag cacctccttc agtgcaatta
      781 taagttttac ttttgctaaa agcaatgaaa ttttcaaaaa tttgtctaaa aagtgtccaa
      841 atttcagaac tttgaacttt tccatttcct ccataagctg tagtgctaaa tctatctaag
      901 tccctttcat agtctccatt gtgtaaatta gcatggatga aaccttgaga atgtgtttgc
      961 ccatctttgg cataagctaa atcctgacct atgagaatga tgttgttatg tcctaaattt
     1021 tcagccagtt cataagccat atgagataca ctcatgcctg cgttaatata tccataatcg
     1081 tctagcccca agcatctcgc aaaaggctgg ccttttatga ttaaaatgta ttttctttta
     1141 ttttttttaa gataagaaat ggttttttta tgcaccaaag aagctactag aaaaatgatg
     1201 tctttatcaa aatctttaaa atcattatta aaacattcag ctactatttc atcgcgttcc
     1261 aacatacaaa cataatcagg ttttatacca tgcttagcta aaataggata agaagaatcc
     1321 gcacaaaaaa ttgtagcttt attagcatat ttttttaaca aaggaagttg tttagtaaga
     1381 gatggtcctg tagaaacaat gatagctgta tcacttatac cctttctttt agaaagtaat
     1441 tctttataac taggatgagt aatcatttga ggaagattat aaacaaattg ttctatacct
     1501 tgcatggcat ctttaggatc attaccacgc ataagattgt gatttttgat gatttgcata
     1561 ttgagtttat taagttttaa aatatcttct ttgtagtatt cataaaaatc attagcaatg
     1621 tgtagattgt aagaacgata aaacaaatcc cctatcaaac gaaaaacttt atccatttta
     1681 ggaagattaa tatcatcatg atgtaaaata atgagtcgcc ctaagcttaa atctttgcta
     1741 aaatctatga aatttaaggc caaaaagata agctctaatt ctttttcaaa gatgattatt
     1801 cttttaagtg cttgattttg aagtagaatt ttatataaaa ttccatttcc aaaaccataa
     1861 aaaaaaagca caggatagcg tgtaaaatct ttaaaatatt ctaaattttt ttcaagctct
     1921 ttgatgggat cttgatacat tttttttaaa tttctttttt ttatgatatt gatatcaaga
     1981 ttatcttttc cttgagtgaa agtaaattct ctaagctctt ttagatcctc aagttttttg
     2041 cgtaagttgt tatactcaaa accgcttaaa gcttttaaat ttttgttaaa attatt
//
LOCUS       DARGBD010000142         2079 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.142, whole genome shotgun sequence.
ACCESSION   DARGBD010000142 DARGBD010000000
VERSION     DARGBD010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2079
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.142"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(127..759)
                     /locus_tag="SFZ04_001747"
     CDS             complement(127..759)
                     /locus_tag="SFZ04_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065979.1"
                     /translation="MLPQPIFLNKLIEFLSDENLDIVNMKKGVDKIFSKKDFYAILEL
                     NIKIMNIAKLIFKSDEQLNILLPQASDYKNTNYFPQELELKKEMDVNLNDLKNCDNKK
                     IIEIIKQEYQNNLIKELDINSQKEKIKILFIINEVPKFLKSIYKECEFKEYGLANYLE
                     FDEIWGFYENNTRYFTILTPMGANKIKLRLENTQNSEKELNIIEVNLDKK"
     gene            complement(759..1109)
                     /locus_tag="SFZ04_001748"
     CDS             complement(759..1109)
                     /locus_tag="SFZ04_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4299 family protein"
                     /protein_id="HEG8065980.1"
                     /translation="MEDLKLLQRRWEEAYEAMPKLYETPDGLIINFTLSEDTDTILFK
                     KPWENFELDDEDKETKWRLSFFSISKDEPLGYLEYKEALEKLQDFSLIQSEKRILIRA
                     MSLEELESLELKGW"
     gene            complement(1194..1760)
                     /locus_tag="SFZ04_001749"
     CDS             complement(1194..1760)
                     /locus_tag="SFZ04_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065981.1"
                     /translation="MKYYKMMYNGQHNDVDNWINCIKPDIKNNDKYALLESKPITNWQ
                     TPSFEIDKDDGKILTDLISNVYNWRIVSPKFINLMQDLIKDCVQYLDVEIKSQEINYY
                     GCKIMHVIKSLEALDYEHSVYTYMGDNDEYLSITKAVLKKSKLDGSHIFRIKDDEVPV
                     FVSSEFRKIVRENNLLGFSFSEVMVYEN"
     gene            complement(1760..2053)
                     /locus_tag="SFZ04_001750"
     CDS             complement(1760..2053)
                     /locus_tag="SFZ04_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AHH domain-containing protein"
                     /protein_id="HEG8065982.1"
                     /translation="MQTHHIATNKSKKFTKEFQEILNSYDLKLNGDWNKVKMPHRGRH
                     PNEYHEYILEKMSKIDKIARGDKDKFIKEFEKLKEEVKNNPAILHKDYYKERK"
BASE COUNT          672 a          302 c          192 g          913 t
ORIGIN      
        1 gttgagttta tggtgtttat aatttggtat aaatccacta tgtttttaat ttttatattt
       61 attattttaa cacaaatagt ctaaatttga gtagaaaaag aaattgctta tttttgttat
      121 taaaatctat tttttatcta aatttacttc tatgatattg agttcttttt cgctgttttg
      181 tgtattttct aaacgcaatt ttattttatt tgcacccatg ggagttaaaa tagtaaaata
      241 tctagtatta ttttcataaa aaccccaaat ttcatcaaat tccaaataat ttgctaatcc
      301 atattcttta aactcacatt ctttatagat tgattttaaa aattttggca cttcattaat
      361 aataaaaagt attttgattt tttctttttg agaattaata tccaattctt taatcagatt
      421 attttgatat tcttgcttaa ttatttctat tattttttta ttatcacaat tttttaaatc
      481 attaagatta acatccattt ctttttttaa ctctaattct tgaggaaaat aatttgtatt
      541 cttataatca gaagcttgtg gtaataatat atttaattgt tcatcacttt taaaaattaa
      601 tttcgctata ttcataattt taatatttaa ttctaatata gcgtaaaaat cttttttaga
      661 aaaaatttta tctacacctt ttttcatatt tacaatatct aaattttcat cagataaaaa
      721 ttctataagt ttatttaaaa atataggttg aggaagcatt accacccttt aagctctaag
      781 ctttcaagct cttctaaact cattgctcta attaaaatcc ttttttctga ttgaattaaa
      841 gaaaaatctt gcaatttctc taaagcttct ttatactcta aataccccaa aggctcatct
      901 ttgctaatgc taaaaaaact cagcctccat ttggtttctt tatcttcatc atctaattca
      961 aaattttccc aaggtttttt aaaaagaata gtatctgtat cttcacttag ggtgaaattt
     1021 attattaacc catctggtgt ttcataaagt ttaggcatag cttcataagc ttcttcccaa
     1081 cgcctttgta aaagttttaa atcttccata aatttttcct taaatataaa atgaaattat
     1141 aactaaaaat ctttttatat taaattgcaa aattttttat agcttttagt ctttcaattt
     1201 tcatatacca taacttcact aaaactaaaa cctaataaat tgttttctct cactattttt
     1261 ctaaattcac ttgatacaaa aacaggcact tcatcatctt taattctaaa tatatggctt
     1321 ccatcaagtt ttgatttttt taaaacagct ttagtaatac ttaaatattc atcattatca
     1381 cccatataag tatatacaga atgttcataa tctaaagcct caagtgattt tattacatgc
     1441 ataattttac aaccataata atttatttcc tgacttttaa tttctacatc taaatattgc
     1501 acacaatctt taattaaatc ttgcattaaa tttataaatt taggagagac tatacgccaa
     1561 ttatatacat tagatattaa atcggtcagt attttaccat catctttatc gatttcaaaa
     1621 ctaggtgttt gccaatttgt gataggtttg gattctaaaa gtgcatattt gtcattattt
     1681 tttatatctg gtttaataca atttatccaa ttatcaacgt cattatgttg tccattatac
     1741 atcattttat aatatttcat tattttctct ccttatagta atctttatga agtatagcag
     1801 gattgttttt gacttcttct tttagttttt caaattcttt tatgaattta tccttatctc
     1861 ctcttgctat tttatcaatt ttactcattt tttcaagaat atattcatga tattcattag
     1921 gatgtcttcc gcgatgtggc attttaactt tattccaatc tccatttagt tttaaatcat
     1981 atgaattaag tatctcttga aattctttag taaatttttt actcttatta gtagcaatat
     2041 gatgggtttg aattgatgat tgtttgttat tgcttcctc
//
LOCUS       DARGBD010000143         1996 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.143, whole genome shotgun sequence.
ACCESSION   DARGBD010000143 DARGBD010000000
VERSION     DARGBD010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.143"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1223)
                     /locus_tag="SFZ04_001751"
     CDS             complement(<1..1223)
                     /locus_tag="SFZ04_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065983.1"
                     /translation="MKQTLSSNRVSFYLFSTKTFSDEKYLNAWSLKGERLNAKDWFEF
                     KQANKDKFYNKHLENTLKAMQEFKAYFSVDQFEGINLHGDDEWLDFLPSNYTQFYNRL
                     CRDKSKYILHRYYQKNDLAEIGMLKNLSPNFPFWDEKGENFSQNQIDIFIEKDNLAPY
                     FNKYDIYFNSSLELSFNFSDESLEYLINNYNHRINHTFTPKSQDEIQKELNLSKEDKI
                     ILELENMFLNLCKGISADYAFMDFSYFFVGYDHTLDSKNNTLKSYPINQDKLIHKRSF
                     KEYIEEYANTYFLNYYSKEFLNELDNQELNKDRLNYYLINYNKIPKNTEEENIQGILS
                     KQKDIDINFVNFIDYKDYVYKNKDDFWEFSAKENSILWEKFLSKNTLKPFPLNFDCSL
                     EEKLLYAKDEQLENIL"
     gene            complement(1220..1552)
                     /locus_tag="SFZ04_001752"
     CDS             complement(1220..1552)
                     /locus_tag="SFZ04_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065984.1"
                     /translation="MLSYEYKNLVENGNLKVDAKYKVALPPNLIAVLEYDKSEFNGVN
                     LRNFINDLEFELEHIEMELYDDPADFEGGDYYNEDSDCDEDYTVEDWVEDQVSDIKDF
                     LYALKDFK"
     gene            complement(1730..>1996)
                     /locus_tag="SFZ04_001753"
     CDS             complement(1730..>1996)
                     /locus_tag="SFZ04_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8065985.1"
                     /translation="LLIELGANVNFATPTTPLDDAKGSRNKKLLKDAGAMTSEQIRKK
                     FNLPAYDSSHCEIDGKTDMDLLGKYHDEYSKLLNDAIKKAKESE"
BASE COUNT          679 a          288 c          215 g          814 t
ORIGIN      
        1 agtatgtttt ctagttgttc atctttagca taaagaagct tttcttctaa agagcaatca
       61 aaatttaaag gaaaaggttt tagggtattt ttacttagaa atttttccca aagtatagaa
      121 ttttcttttg ctgaaaactc ccaaaaatca tctttatttt tataaacata gtctttataa
      181 tctataaaat ttacaaaatt gatatctata tctttttgtt tagaaagtat gccttgtatg
      241 ttttcttctt ctgtgttttt tggaattttg ttgtaattaa taagataata attaagtcta
      301 tctttgttta attcttgatt gtcaagttca tttaaaaact ctttagaata ataatttaaa
      361 aagtaagtat ttgcgtattc ttctatatat tctttaaaac ttcttttatg aattaattta
      421 tcttgattaa tgggataaga ttttaaagta ttatttttag aatctaaagt atgatcatat
      481 cctacaaaaa aataagaaaa atccataaaa gcataatcag cactgatgcc tttacaaaga
      541 tttaaaaaca tattttcaag ttctaaaatg attttatctt ctttgcttaa atttaattct
      601 ttttgtatct catcttgact ttttggagta aaagtatgat tgattctgtg attataattg
      661 ttaattaaat attctaagct ttcatcacta aaattaaagc ttagctcaag tgaagaatta
      721 aaataaatat catatttatt aaagtagggt gctaaattat ctttttctat aaaaatatca
      781 atttgatttt gagaaaaatt ttctcctttt tcatcccaaa aaggaaaatt aggagaaaga
      841 tttttaagca taccaatctc tgccaaatca tttttttgat aatatcgatg taaaatatat
      901 ttacttttat ctctacataa acgattataa aattgagtat aatttgaagg caaaaaatca
      961 agccattcat catcaccatg tagatttatg ccttcaaatt gatcaacact aaaataagct
     1021 ttaaactctt gcatagcttt taaggtattt tctaaatgct tattataaaa tttgtcttta
     1081 ttggcttgtt taaattcaaa ccaatctttg gcatttaaac gctcgccttt taagctccaa
     1141 gcattaagat atttttcatc actaaaagtt ttagtagaaa aaagataaaa gcttactcga
     1201 ttagagctta atgtttgttt catttaaaat cttttaaagc atataaaaag tctttaatat
     1261 cacttacttg atcttctacc caatcttcta ctgtataatc ttcatcacaa tcgctatctt
     1321 cattataata atctccccct tcaaagtcag caggatcgtc ataaagttcc atttctatat
     1381 gttctaattc aaattccaaa tcatttataa aatttcgaag atttacgcca ttaaattcac
     1441 ttttatcata ttctaaaaca gcaataagat taggcggcaa ggcaacttta tattttgcat
     1501 caacttttaa attgccattt tctactaaat ttttatattc atagcttaaa atgctactta
     1561 taaaagctct tcgttcgtat ttttttaaac catataaagc atcttttaaa taattgtcat
     1621 ttttaagata gtatttaaac acttcttgta tatattcatc atccaataat tttttatttt
     1681 tcattatctt tccttataat ttattttagc aaagtgaatt tctattccct cattcacttt
     1741 ctttagcctt ttttatagca tcgtttaaaa gtttggaata ttcatcatga tatttaccta
     1801 ataaatccat atcagttttt ccatcaattt cgcaatgaga agaatcatat gctggtaaat
     1861 taaatttctt tctgatttgt tctgaagtca ttgctcctgc atcttttaaa agctttttat
     1921 ttctagatcc ttttgcatca tctaaagggg tggttggggt agcaaaattc acattagctc
     1981 caagttcaat taaaag
//
LOCUS       DARGBD010000144         1966 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.144, whole genome shotgun sequence.
ACCESSION   DARGBD010000144 DARGBD010000000
VERSION     DARGBD010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.144"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..778)
                     /locus_tag="SFZ04_001754"
     CDS             complement(<1..778)
                     /locus_tag="SFZ04_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEG8065986.1"
                     /translation="MKIKDMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFD
                     GILFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISE
                     HFLAPILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLE
                     INFWQDDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLN
                     IFLELDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEI"
     gene            891..>1966
                     /locus_tag="SFZ04_001755"
     CDS             891..>1966
                     /locus_tag="SFZ04_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HEG8065987.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLA"
BASE COUNT          576 a          257 c          330 g          803 t
ORIGIN      
        1 taatttcata aagtgttgaa ttttttaatt ctttttctat gctttttttg gaaaaaatag
       61 agattgcttt tttttgtaaa acaagttctt taatcgcagc cattctatca agttcaagaa
      121 aaatattaag tttttttgag cttgcaccaa tttcgtttaa aaatttatcc cttaagcctg
      181 agcctacttc tcttaaaatc cacttttgtt ccaaaagttc atcgatataa aattcttttt
      241 cattgagttt tttatcactt gtagctacta taagttcatc atcttgccaa aaatttattt
      301 ctaaattttc atactccact aaagctggat caagttctgc ttcaatgatt gcaaattcta
      361 tatttccgtt ttttagtaaa tttaaacatt cttttgaatt ctgcgtttga gagcgaattt
      421 ctatgttttt aaattctgcc ttaaaatcaa ataaaatagg agctaaaaaa tgttcagaaa
      481 tgctttgagt tgaggctatt tttatttccc ctaagagcat actttcgtcg tttaattttt
      541 ctaagctttg gtagtaggct tgtataattt ttaaccaatt ttttcctagt tctaaagctt
      601 ttggtgtagg taagagtttt tttccaagtc tttcaaataa aatgccatca aatttatttt
      661 ctaaattttt aattactatt gaaacattag gttgagttat ggaaaaattg ttggctgtat
      721 gagttggact ttgagtgttt aaaagatcta aaaatatttc catatctttg attttcatga
      781 gtgattcctt tatttaataa aaaaaattta ttataaaaat taaaataata tatttctata
      841 attttaataa aaaaaatata ataacacaaa atttacaaaa aggaaaataa atgaaaacaa
      901 gttttttagc acatagcgtg gctatagtgc gatcaaattt taagggtttg ctttttactg
      961 cttgtatagt gatttttgct atgtatcttt ctagtgttca aagtatcaaa gataccactc
     1021 atttagcagc gactgctttt gctattatca taggagtgtt gctttctcct tggtttttta
     1081 aataccaaca tcattttcaa gccggagtcc attttagtgc gaaaaaactt ttaagacttg
     1141 gcattgtttt atatggtttt aatatcactt taactgagct tttaagcgta ggattgaaag
     1201 gatttttgct ttctgctata gtgatatttt ttgtttttat tattgcttta tttgtgggaa
     1261 cgaaaatttt taaactcgat aaagaaactt ctatgcttgt tggagctgga agtgcgattt
     1321 gcggtgcggc agcggtttta gcactagagt caagtttgaa aagtgatcct tttaagggaa
     1381 ttttagctgt aggtacggtg gtgatttttg gacttgtatt tatgttctta tatcccatag
     1441 ctttttcttt aaatcttttt cctttttttg atcaaaatgc tatgggtgtt tttatgggag
     1501 ctacgttgca tgaggtggca aatgtcgcag gtgctgctga aatggcaaag gatatggcag
     1561 gatttgagca aggtgcttct aatgttgcag tgattataaa aatgatgaga gtgattttac
     1621 ttgtgccttt tttgcttata gtgacttatt ttttcgctaa aaatcaacat tcaagtagtg
     1681 gaaaaactgc aaaaagtatc actatacctt attttgcttt tgcattttta ggcatgatag
     1741 ttttaaatac ttatttagca agcaaagaaa gtattttagg tattgctacg agtgatatca
     1801 tctctttagg taaaacactt tgtactttat gtatcgtttt tgctatggca gctttaggct
     1861 tgcaaattga ctttaaaaaa tttttaaaaa gtggctctag ggtatttggc ttggcttttg
     1921 ttttagggct tgttttgatt tttggaggat attttttaac cttagc
//
LOCUS       DARGBD010000145         1937 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.145, whole genome shotgun sequence.
ACCESSION   DARGBD010000145 DARGBD010000000
VERSION     DARGBD010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.145"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            22..960
                     /locus_tag="SFZ04_001756"
     CDS             22..960
                     /locus_tag="SFZ04_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG8065988.1"
                     /translation="MKLKNTTISEDLERWIETYLKHIQALSYSNNTSLLYRRILLEFV
                     EYSLDYQDEMQINDIKMTFLVNFLNYLENNSKNGNKLSKKTKITYLRVLTSFFSFISD
                     NNDDLFVFSFDMKKIRFRTEKSEEKLNYLNENEIIRLNNVLEKEKAKKEVYNSFRNSL
                     LIKLMLYGGLRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY
                     FKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIYAKALISKKGLHLLRHTLAMRLTAKG
                     TNLVVIQKILRHANLNTTTIYAKATNDTVKAALLNN"
     gene            complement(1004..1432)
                     /locus_tag="SFZ04_001757"
     CDS             complement(1004..1432)
                     /locus_tag="SFZ04_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065989.1"
                     /translation="MQSIKIGKYPTTTLSSAREKANIFNNMLTEKIDPKEQIQKEDIK
                     KSKTLIIHLNSYLEAENNLQKIKILVKIYQNLQKCSRTPDLIDIEELEFNKEDIFEEL
                     FYALGGLGGMYSVEMIQSRIANFIKILGGEPKLLLERFTA"
     gene            complement(1778..1854)
                     /locus_tag="SFZ04_001758"
     tRNA            complement(1778..1854)
                     /locus_tag="SFZ04_001758"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1818..1820),aa:Arg,seq:gcg)
BASE COUNT          718 a          222 c          263 g          734 t
ORIGIN      
        1 taaaaaaagg atataaataa aatgaaactt aaaaatacta caataagtga agatttagag
       61 cgttggatag aaacttattt gaaacatatt caagcattat cctattcaaa taatacttct
      121 ttactttata ggcgtatttt actagaattt gtagaatatt ctttagatta tcaagatgaa
      181 atgcaaataa acgatataaa aatgactttt ttagtcaatt ttcttaatta tttagaaaat
      241 aattcaaaaa atggcaataa actatcaaaa aaaacaaaaa taacttattt gagagtatta
      301 actagctttt tttcttttat aagcgataat aatgatgatt tgtttgtttt ttcctttgat
      361 atgaagaaaa ttagatttag aacagaaaaa tcagaagaaa aattaaatta tcttaatgaa
      421 aatgaaatta taaggctaaa taatgtttta gagaaagaaa aagcaaaaaa agaagtttat
      481 aatagtttta gaaactcttt actgataaaa cttatgcttt atggaggact tagaatttct
      541 gaagctttaa atgtaaaact ttgtgatttt gaagaggttg atgatgaaat attaaaaata
      601 tccataatag gcaagggcgg taaagaacaa tttgcattta ttaaaaaaga agaagtagat
      661 gatgagcttg aatattttaa agaaaatatc caagatagtg attacataat gcaaactagc
      721 acaggaaaac atttaaatag aagtaatgct tttttgattg taaataatat ttacgctaaa
      781 gctttgatca gcaaaaaagg acttcatttg cttagacaca ctttagccat gagattaaca
      841 gccaaaggaa caaaccttgt ggtcatacaa aaaattctaa gacatgcaaa tctaaatact
      901 actactatat atgccaaagc aacaaatgat acagtaaaag ctgcgttatt aaataattaa
      961 ttttttctaa aattgattat ttacatagac ttctttttga agtctatgct gtgaatcttt
     1021 ctaataaaag tttaggttct ccgccaagta ttttgatgaa atttgcaatt cttgattgta
     1081 tcatttctac ggaatacata cctcctaaac cgcctaaagc ataaaataat tcttcgaaaa
     1141 tgtcttcttt gttaaattca agttcttcta tatcaataag atcaggagtt cggctacatt
     1201 tttgtaaatt ttgatatatt ttgactaaaa tcttgatttt ttgtagatta ttttcagcct
     1261 ctaaataaga atttaagtgt attattaggg tttttgattt ttttatatct tctttttgaa
     1321 tttgttcctt gggatcaatt ttttcagtta acatattatt aaaaatattt gctttttctc
     1381 ttgcgcttga cagtgtggtt gttgggtatt ttcctatttt aatactttgt atttttttgt
     1441 ttaacctata tctaaaataa aaaaaagata atagtacctt ttagcgaatc ttttgcttcg
     1501 atgtagagat tttttgtgca tgcatcttta atatatgttc tttttttaca attaaagttt
     1561 taagttgctt atcattaaca ataatcattt ttaatattcc tatgttaaaa agtatatgtt
     1621 atttttgaat tttaaaattt aacatatact ataacatata cttttaaaat tgtcaaaatt
     1681 gattatttga gattatttta gaagctttca aacattgcta tatcatgctt tagatgatta
     1741 tttcagatga ttcaagatta tttaagaaaa gaagtgatgg tgcgctcaag aggattcgaa
     1801 cctctggcct tttgaaccgc aatcaaatgc tctatccagc tgagctatga gcgcaaaaat
     1861 aagttaaaat tatatataaa tattcttaaa ataagcaaaa ttttgcttat tttgtttgtt
     1921 ttttagcttt tttacct
//
LOCUS       DARGBD010000146         1921 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.146, whole genome shotgun sequence.
ACCESSION   DARGBD010000146 DARGBD010000000
VERSION     DARGBD010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.146"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..155)
                     /locus_tag="SFZ04_001759"
     CDS             complement(<1..155)
                     /locus_tag="SFZ04_001759"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065990.1"
                     /translation="MKFNPPSKEDLIKAIDEFNAKNSCSIPYFIADSFINYYKQDDGR
                     WLMANKKP"
     gene            complement(152..1114)
                     /locus_tag="SFZ04_001760"
     CDS             complement(152..1114)
                     /locus_tag="SFZ04_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065991.1"
                     /translation="MNLDFLNEFKLKNKDLNEKLEFLIPDFLVKKAITIIYANGGSGK
                     SYLSAAISKTLCKDTRVKSIVYVDMDNPLNVLNERGFGELILNESKFTYIHRSSLKTS
                     AYELLEMIEGKGVAGSYEGVLFVLDSLRNFADIDNDTKMMSLMSLLMNLRECGATIMA
                     LHHSTKDGRAFKGSNHIRNSSDCMYFLQKVANLEQGFEVLLSVQKERAGIKDQAFFIN
                     TKTLNIKNTDLQNAKISDKEEAFIDKVLKLLNEKSLSTSEILSALDVSRSDNFSRNTL
                     EKFKGVFWESELGGENGRTFVWKSLKADNKNSNDKELSLFGDEL"
     gene            complement(1223..1609)
                     /locus_tag="SFZ04_001761"
     CDS             complement(1223..1609)
                     /locus_tag="SFZ04_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065992.1"
                     /translation="MKLQDFDFRVWDKHHKGCGNKDCKCQTKYVYGEEAKTRLSEFKE
                     DCEIELFTGLYDKKGKKVYENDIVKVKSLYDYFLAKISIHKEGTFYFEGKNGDYIGSL
                     IYLVEDEGYTIETIGNIHENPELLKC"
     gene            complement(1606..1878)
                     /locus_tag="SFZ04_001762"
     CDS             complement(1606..1878)
                     /locus_tag="SFZ04_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065993.1"
                     /translation="MYVNVSIDASDLEDIDAHDLAELFEDLSTKEQEEFFGIIHKDIK
                     PLERIRAILSNLSNDEALKLLKELNNEFKSDEEWQKTIKSINGGNK"
BASE COUNT          592 a          358 c          216 g          755 t
ORIGIN      
        1 ggctttttat tagccatgag ccatcttcca tcgtcttgct tatagtaatt tataaagcta
       61 tctgctataa aataagggat agagcaagag tttttagcat taaactcatc aatggcttta
      121 attaaatctt ctttgcttgg agggttaaat ttcataactc atccccaaat aagcttaatt
      181 ctttgtcgtt gctgttttta ttgtcagctt ttaaactttt ccaaacaaaa gtgcgaccat
      241 tctctccgcc aagctcactt tcccaaaaaa cacctttaaa tttctctaaa gtattccttg
      301 aaaaattatc actcctactt acatcaagag ccgataaaat ctcacttgtg cttaggcttt
      361 tttcgtttaa aagctttaaa actttatcta taaaagcttc ttctttatcg ctgattttag
      421 cgttttgcaa gtcggtgttt ttaatattta gagtttttgt attgataaaa aaggcttgat
      481 ctttaattcc tgctctttct ttttgcacac taagcaatac ttcaaagcct tgttctaagt
      541 tagccacttt ttgtaaaaaa tacatgcaat cacttgagtt tctaatatga tttgagcctt
      601 taaaagctct gccatctttt gtagaatggt gtaaagccat aatggttgcc ccacattctc
      661 ttaaattcat gagtaaagac attaaagaca tcattttagt atcattatca atatctgcaa
      721 aattgcgtaa agaatcaagt acaaataaaa ccccttcata gcttcctgct acgcctttgc
      781 cttcaatcat ttctaaaagc tcataagctg aagtttttaa gcttgatctg tgaatataag
      841 tgaatttgct ttcatttaaa ataagttcac caaaacctct ttcatttaaa acatttaaag
      901 gattatccat gtcaacataa acgatgcttt taacccttgt atctttgcaa agtgttttag
      961 aaatggcggc acttaaataa ctttttccac ttccaccatt tgcataaata atagttattg
     1021 cttttttaac taaaaaatca gggattaaaa actctaattt ctcgtttaaa tctttatttt
     1081 ttaacttaaa ctcatttaaa aaatccaaat tcatcttttt tccttgctaa aacttaatca
     1141 agcccattaa atcaatggac tttgttaaat tttttggctt ttttaacata tttcattttt
     1201 atgttaaaat ttttaatatt ttttaacatt tcaaaagttc aggattctcg tggatattgc
     1261 cgatagtttc aatagtatat ccttcatctt caactaaata aattaaagag cctatgtaat
     1321 ctccattttt tccttcaaaa taaaaagtcc cttctttgtg aatgctgatt tttgctaaaa
     1381 agtaatcgta tagactttta actttaacaa tatcattctc gtatactttt ttacctttct
     1441 tgtcataaag ccctgtaaaa agctctattt cacaatcctc tttaaactca gataaccttg
     1501 ttttggcttc ttcaccataa acatattttg tttggcattt gcaatcctta ttaccacaac
     1561 ccttgtgatg cttatcccaa actctaaaat caaaatcttg tagtttcatt tgttacctcc
     1621 atttatactt tttatagttt tttgccattc ctcatcgctt ttaaactcat tattaagttc
     1681 ttttaaaagt ttaagtgctt catcattaga caaattagaa agaatagctc ttattctttc
     1741 taatggcttg atatccttat ggataattcc aaagaattcc tcttgctctt ttgtgcttaa
     1801 atcttcaaaa agttcagcca aatcatgagc atctatatct tctaaatcac tcgcatctat
     1861 gcttacattg acatacattt tttatccttt tgttttaaat taagttttaa aaacttaatc
     1921 a
//
LOCUS       DARGBD010000147         1890 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.147, whole genome shotgun sequence.
ACCESSION   DARGBD010000147 DARGBD010000000
VERSION     DARGBD010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.147"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            19..591
                     /locus_tag="SFZ04_001763"
     CDS             19..591
                     /locus_tag="SFZ04_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEG8065994.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(596..1552)
                     /locus_tag="SFZ04_001764"
     CDS             complement(596..1552)
                     /locus_tag="SFZ04_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065995.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSKIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCLGKHHVLILNKKNIASITTLIFIGVLSIILPRNT
                     TFNSAGLEFHFITLNFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFAAYFQF
                     LFQEGTGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(1613..1822)
                     /locus_tag="SFZ04_001765"
     CDS             complement(1613..1822)
                     /locus_tag="SFZ04_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG8065996.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     ENSKKTHEELLHIEQTIQDEIAKFK"
BASE COUNT          752 a          224 c          268 g          646 t
ORIGIN      
        1 ctataaaaaa ggaaaaaaat gaaaaaagtt ttattgagtt cattggttgc ggtgtctttg
       61 ttaagcacag gtttgtttgc taaagaatat actttagata aagcacatac agatgtaggt
      121 tttaaaatca aacatttaca aattagcaat gtaaaaggaa atttcaaaga ttattctgcg
      181 gtgattgatt ttgatcctgc gagtgctgaa tttaaaaagc ttgatgtaac tataaaaatc
      241 gcatctgtaa atacagaaaa tcaaacaaga gataatcact tacaacaaga tgattttttc
      301 aaagcaaaaa aatatcctga tatgactttt acaatgaaaa aatatgaaaa aatcgataat
      361 gaaaaaggca aaatgacagg aactttaact atagctggag tttctaaaga tatcgtttta
      421 gatgctgaaa tcggcggtgt agctaaaggc aaagatggaa aagaaaaaat aggattttct
      481 ttaaatggaa aaatcaaacg ctctgatttt aaatttgcaa caagtacttc aactattact
      541 ttaagtgatg atattaattt aaatatcgaa gttgaagcga acgaaaaata attttttagt
      601 ctaagagtct tgctcttaga ctttgtaaat ttttatccaa attttcttca ctttcttgcc
      661 aaatcaattt aaaatccggt ttaaaatttt cattttctaa attaaattcc gtgtttttca
      721 aggtggattc taaaaaagca agatgattta aagcttgatt tttatcatta aaaattaaaa
      781 taaaatcatt ttctacgata aaaatttttg ctctaaagcg ttttaaaatt tttgcaattt
      841 gttttaaaat gagtttggta tagctttctt tggtatcttt tagttcatta aaatgaagca
      901 aggcaatgat atagttgttt tttccttttg taaagcgtgt aaggcttttt tcattgggta
      961 gctttgttaa ggtgtcaaaa aaagctaacc tataagcgtg atttaaaaga taaaaacaaa
     1021 aaaccaaact tgcaaattca aaatatctta ttcctgttcc ttcttggaat aaaaactgaa
     1081 aatatgcagc aaaaaatgcg ataagaagat aatattcttt agttttaaaa gttttgataa
     1141 aaatgagtat taagccgact aaaaaaaata aaaatcctaa ttcactcaca ggtttaaaaa
     1201 aatttaatgt aataaaatgg aattctaaac cagcgctatt gaaagtagta tttctaggta
     1261 aaatgatgct taaaacgcct atgaaaataa gggttgtaat tgaggcgata ttttttttat
     1321 ttaaaattaa aacatgatgt tttccaaggc aaaatagagt aaaaatcata ggtaaaaaca
     1381 aagccacaaa taaattagct tgaaaaaaac ttgtataaaa ataaggcagc ttagctccta
     1441 gtaatactaa agtcaaaaag aaaatttttg aatttttaaa gtaaaaggat agcacaagag
     1501 ctgaaatttc aaaaataaaa ctcaatgata ttaaaaaatc taataaaaac atttcaaatc
     1561 cttgatttta ataaaagtga taattgtata gaaaaaagct taaaagcggg ttttatttaa
     1621 atttagcaat ttcatcttgt atggtttgtt ctatatgaag caattcttca tgagtttttt
     1681 tgctattttc taaaagttca tcaaatttaa agccaagcat aacaatacga tataaattgg
     1741 gtttatattt tctccaatta tataaagtgc taacatcaat gtctagttca tatgccatat
     1801 cacgcttgct cttttttgtc attttttacc ttaaaaattt agcctttaaa aaattttaca
     1861 ttaaaatttc tttattaaaa acacttgaaa
//
LOCUS       DARGBD010000148         1887 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.148, whole genome shotgun sequence.
ACCESSION   DARGBD010000148 DARGBD010000000
VERSION     DARGBD010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.148"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1778
                     /locus_tag="SFZ04_001766"
     CDS             <1..1778
                     /locus_tag="SFZ04_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065997.1"
                     /translation="FTKVNFHIKEFQKVYILENCKLCFYSPFHLQTQNGKEVKKIEKK
                     GKSKIYLIDEDGKTVDIDKTSEQNKIKAREETRKKEEKSKNVLFSNDEKGNDAINAYF
                     GEKNIDTLNKAYEEREAKPLSRNTENFKDYDVFYDVYTSKDNKDNSVNKKLGCGDGFE
                     VNNGIAEVGAEFFDKCFEKGIYVLIPRLVSLDKNEELHFDPVPLEDKGFVVTDFRKGK
                     KGEKNIDLSFQRNIAKIKNPNLTLQSPKEFLQALNENKEFTEDDKIQQAQAIKKACGK
                     KADEITKILLKDDKSLKDVITDKDGLKEKIKELQRKPETNEKLNLLGRLEFLQRNQDK
                     AKDYKKTIKDLQNPQQASNDKQNDKTKSRTKNKQKQTTTPNQEEQKNKNINSKDIGDA
                     GEYAASMLFTKRSTRYLSNRRKIDANFNTHSFNHTIPDFLVTLNDYPTLVEVKNVQDQ
                     ALTEQISFELKLAREYELDYLFICNHYTKLVENIAGGNVTVKNEKEIKLKEIQNHDDK
                     KKKGYETNTKNLTKFDERYDWGSRRGFIYHRHAHRSIKTIFKEMYLHHIKGAAPNKII
                     IKRLNLNNSANIEEELNKNKQIQKN"
     gene            1789..>1887
                     /locus_tag="SFZ04_001767"
     CDS             1789..>1887
                     /locus_tag="SFZ04_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8065998.1"
                     /translation="MKTLEDIKAMSYQEKDELEDLVLEIIDDNDLVK"
BASE COUNT          898 a          224 c          291 g          474 t
ORIGIN      
        1 actttactaa agtcaatttt catatcaaag aattccaaaa agtttatata ttagaaaatt
       61 gtaaattatg tttttacagt ccttttcatt tgcaaacaca aaatggaaaa gaagtgaaaa
      121 aaatagaaaa aaaaggcaaa tctaaaattt atcttataga tgaggatgga aaaactgtag
      181 atattgataa aacttcagag caaaacaaaa taaaagcaag agaagaaaca agaaaaaaag
      241 aagaaaaaag taaaaatgta ttatttagca atgatgaaaa gggaaatgat gcaatcaatg
      301 cttattttgg tgagaagaat attgatacgc taaataaagc ctatgaagaa agagaagcca
      361 agcctttatc aagaaataca gaaaatttta aagactatga tgtattttat gatgtttata
      421 caagtaaaga taacaaagat aacagtgtaa ataaaaaact aggatgcggt gatggctttg
      481 aagtaaataa tggcatagct gaagttggag cagaattttt tgataaatgc tttgaaaaag
      541 gaatttatgt tttaatacca agattagtat ctttagataa aaacgaagaa ttacactttg
      601 atcctgtgcc tttagaagat aagggctttg tggttactga ttttagaaaa ggaaaaaagg
      661 gagaaaaaaa tatagattta agctttcaaa gaaatatagc taaaataaaa aatcctaatt
      721 taactttaca aagccctaaa gaattcctac aagccttaaa tgaaaataaa gaatttacag
      781 aagatgataa aatacaacaa gcacaagcta ttaaaaaagc ttgtggaaaa aaagcagatg
      841 aaataaccaa aatattgctt aaagatgata aaagtttaaa agatgttatt acagataaag
      901 atggactaaa agaaaaaatc aaagaattgc aaagaaaacc cgaaacaaat gaaaaactaa
      961 acctactggg tagactggaa tttttacaaa gaaatcaaga taaagctaaa gattataaaa
     1021 aaacaatcaa agatcttcaa aaccctcaac aagctagcaa tgataagcaa aacgataaga
     1081 caaagagtag aacaaaaaac aaacaaaaac aaaccaccac cccaaaccaa gaagaacaaa
     1141 aaaataaaaa tatcaattca aaagatatag gagatgcagg tgaatatgct gcttctatgc
     1201 tttttactaa aagatcaact aggtatttat ctaatagaag aaaaatagat gctaatttta
     1261 atacccatag ttttaatcat accatacctg attttttagt aacgctaaat gattacccta
     1321 ccttagtaga ggttaaaaat gtccaagatc aagctttaac agaacaaata agctttgagt
     1381 taaaactggc tagagaatat gagcttgatt atttatttat atgcaatcac tatactaaat
     1441 tggtagagaa tatagcagga ggcaatgtaa ctgtaaaaaa tgaaaaagaa atcaaattaa
     1501 aagaaatcca aaaccatgat gacaaaaaaa agaaaggcta tgaaacaaat accaaaaatc
     1561 ttacaaaatt tgatgagcgg tatgattggg gatcaagaag aggctttatc taccacagac
     1621 atgctcacag aagcataaaa acaatattta aagaaatgta tctacatcac ataaaaggag
     1681 cagcacctaa taaaattatc ataaaaagat taaatttaaa taattctgct aatatagaag
     1741 aggaattaaa caaaaacaaa caaatacaaa aaaattaaag gaaaaacaat gaaaacctta
     1801 gaagatatca aagctatgag ctatcaagaa aaagatgaat tagaagattt agttcttgaa
     1861 attatagatg ataatgattt agttaag
//
LOCUS       DARGBD010000149         1848 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.149, whole genome shotgun sequence.
ACCESSION   DARGBD010000149 DARGBD010000000
VERSION     DARGBD010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.149"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..495
                     /locus_tag="SFZ04_001768"
     CDS             <1..495
                     /locus_tag="SFZ04_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8065999.1"
                     /translation="AIKFFKEINHFKDELYVQFFSEAEPKSELCERDLKLFNMGFCFD
                     EEYIKSTYNVEGELIRETLEKKDFKDLENDKKVFENKVKFIQKKPMDKIDAALESKEF
                     KVIDEQIKEKLEQAFNQLLNDSNSYEELFENLQKEFSDISINILEEFMFQALANSSIL
                     GYGD"
     gene            498..1736
                     /locus_tag="SFZ04_001769"
     CDS             498..1736
                     /locus_tag="SFZ04_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEG8066000.1"
                     /translation="MFFGKPNKAIEYLQSKKPQTSFDYDEIMHETHNKVFTIAKLNDL
                     NLLKDIQNSLIEALKNGDKIETWKKQITPKLKAKGWFGDKVEVVNPKTGEVKNIKIGT
                     SRLKKVFETNMRIAKAQAVWENILQSNKEYVRWISLLHGNRRKEHLALHGMILRRDDP
                     FWINNRPPCGYGCKCSIQGVSESELKLYGWKLSKQTPADLADKNFNYNKNLGVEKLEK
                     LYKEKISQISQNFIKLEALSLATKTKENAQSFQREKELYIWQKSLDDMVDEVIIKDNQ
                     KYPINFIQVGKIDKTTKEFLEKLNKKDLEDLYFTLSKNNLLHASPKRKASYNQALSAD
                     EIKQIVKVLDEAKEVYWDTKEESLVYFFDDLKNSKKVNKIIIRPDYKLKKFGKTNALI
                     TLGKVDKDTKESSKEYEKIK"
BASE COUNT          776 a          241 c          324 g          507 t
ORIGIN      
        1 gccattaagt ttttcaaaga aatcaatcat tttaaagatg aactctatgt gcagtttttt
       61 agcgaagcag aaccaaaaag tgagctttgc gaaagggatt taaaactttt taacatgggc
      121 ttttgctttg atgaagaata cattaaaagc acttataatg tagagggtga gcttataaga
      181 gagactttag aaaaaaaaga ctttaaagat ttagaaaatg ataaaaaagt ctttgaaaac
      241 aaagtaaagt ttatacaaaa aaagcctatg gataaaattg atgcagcact tgaaagtaaa
      301 gagtttaaag tcattgatga gcaaattaaa gaaaagctag aacaagcctt taatcagctt
      361 ttaaacgatt ctaattctta tgaagagctt tttgaaaact tgcaaaaaga gtttagcgat
      421 atttctatca atattttaga agagtttatg tttcaagctt tagctaattc aagtatttta
      481 ggctatgggg attaaaaatg ttttttggta agccaaataa ggcaattgaa tatttacaaa
      541 gcaaaaaacc ccaaactagc tttgattatg atgaaataat gcatgaaaca cataataaag
      601 tctttaccat tgcaaagcta aatgatttaa atcttttaaa agatattcaa aactctttaa
      661 tagaggcttt aaaaaatggg gataaaattg aaacttggaa aaagcaaatt accccaaaat
      721 taaaagctaa aggatggttt ggggacaaag tagaggttgt aaaccctaaa acaggagaag
      781 ttaaaaatat caaaataggc acttcaagac taaaaaaagt ctttgaaaca aatatgagaa
      841 tagcaaaagc ccaagcggtg tgggaaaaca ttttgcaaag caataaagaa tatgtgcgtt
      901 ggataagctt acttcatggc aatcgaagaa aagagcattt agccttacat gggatgattt
      961 taagaagaga tgatcctttt tggattaaca accgcccacc ttgtggttat gggtgcaaat
     1021 gctctattca aggtgtaagt gaaagtgaat taaagcttta tggctggaag ctttcaaagc
     1081 aaacaccagc tgatttggcg gataaaaatt ttaactacaa taaaaactta ggcgtagaaa
     1141 agcttgaaaa actttataaa gaaaagataa gccaaataag ccaaaacttc ataaagttag
     1201 aagctttaag cttagcaacc aagacaaaag agaatgcaca aagttttcaa agagaaaaag
     1261 aactctatat ttggcaaaaa agcttagatg atatggtgga tgaagtcatc attaaagata
     1321 atcaaaaata tcctatcaat ttcatacaag taggcaaaat agataaaaca actaaagaat
     1381 ttttagaaaa gcttaataaa aaagacttag aagatttata ttttacgcta agtaaaaaca
     1441 atcttttaca cgcaagccct aaaagaaagg caagttataa tcaggcttta agcgcagatg
     1501 aaatcaagca aattgttaaa gtcttagatg aagcaaaaga ggtttattgg gatacaaagg
     1561 aagaaagctt ggtttatttc tttgatgatt taaaaaatag taaaaaagta aataaaatca
     1621 ttataagacc tgattataaa ttaaagaaat ttggaaaaac aaacgcactt attacacttg
     1681 gtaaagtaga taaagataca aaagaaagtt ctaaagagta tgaaaaaatt aagtgaagcg
     1741 ggtgggactc gaacccacaa caccaccaaa gctctaaact tctcgttgtg cttaccactc
     1801 ataaagagtt cacatcttcg cttcgttaat aaaaatttta ccattacg
//
LOCUS       DARGBD010000150         1807 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.150, whole genome shotgun sequence.
ACCESSION   DARGBD010000150 DARGBD010000000
VERSION     DARGBD010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.150"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            78..1244
                     /locus_tag="SFZ04_001770"
     CDS             78..1244
                     /locus_tag="SFZ04_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066001.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQKGNENSLEQ
                     LSYIFNNITYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYVNGVDKKTSTQDKLSIFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDRRQKQANINKILNSYMSVMV"
     gene            1381..1782
                     /locus_tag="SFZ04_001771"
     CDS             1381..1782
                     /locus_tag="SFZ04_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8066002.1"
                     /translation="MIYNEKIISMNNDLLDHQHKELFEISKKLSLMNQYHVGTKELKI
                     VLRELLIMINRHFSDEEAFMRKIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
BASE COUNT          788 a          222 c          205 g          592 t
ORIGIN      
        1 gactgaattt aatttttaaa aaacttggca cacattttgc ttataaaaaa atcagcaata
       61 ttttggaaag atttaaaatg actataaatt cggcaaatcc atatcaaaat ttaaccttat
      121 ctaatccttt gcagaatagc tctgctctaa atttgattaa agatagcaaa gccttagatc
      181 aaaaaggaaa tgaaaatagc ttagaacaat tgagttatat ttttaataat atcacttatg
      241 ctagtgaatt tggatttaga atcaatgaag aaggtttttt tgataaagat ttaaataaaa
      301 ttgcaaatat accagaatct tatgatatca acattaaaag cgttagaagc atagcgaaag
      361 aactcgcaaa acaagatgaa aatttaaact acaataaaat tgatctacct tatcttttaa
      421 acagctatca tagttcatta aaatctataa attcagaatt tttacaagat gataatgctt
      481 atttaagtcg cgatcttatt tcaaaactat catcaggttt ttcaacagat aatggagaat
      541 ttttaggcca aatttcaaga atttacaaca atcaagaaga aattgatttg gcattaagta
      601 atatcacaaa tttaaatact ttaatgttag ataataaaat aactaatttt cactttgata
      661 aagccataga aaacacttct tctaatgaaa ttttaaaacc ttatttaact aaaaatgcag
      721 aagtatcaaa atctggtctt ttaatgaatt ttatctacca tgatataaaa actcaaaacg
      781 aaaaagaatt taactttttt atgaaacctg ccactttaga actaagctct catcaaaatt
      841 tacaaaaaat tctcaagggt gaaacagata tagaagatta catcaaaaaa gaaaatgaaa
      901 aaaagatgag ttttgatctt tatctttatg tgaatggcgt agataaaaaa acaagtactc
      961 aagataaact atctatattt tttcaacaat atattaacta ccaaaaagat atggatttaa
     1021 gagaatttgc aaattcaagt tcaatatttc aaatttatat cgatcaaaat cgcaatgatt
     1081 ttgatgctct taaaaaacaa tatcaaaacc aaagtcaaga tacgcaaaga ttagaagaag
     1141 caaatcaact acgttctagc tctatagaaa attttttaga tcgtcgtcaa aaacaagcaa
     1201 atataaataa aattttaaac tcttatatgt ctgtgatggt ttaaaataat tttttaaaaa
     1261 atatataaat tataaatact ttaataataa taatttttat ataattaatt aataaaattt
     1321 taagtattat agcattataa tccgttctcg aaaaatataa atataaaagt actcaaaacc
     1381 atgatttata atgaaaaaat tatttcaatg aataatgatc ttttagatca tcaacataaa
     1441 gaactttttg aaatttctaa aaaactctct ttaatgaacc aatatcatgt tggaacaaaa
     1501 gaattaaaaa ttgtcttaag agagttgttg ataatgatca atagacattt ttcagatgaa
     1561 gaagccttta tgagaaaaat agaatatcct tatatcaacc atcatacaag aattcacaga
     1621 aaaattatct tagaaattga agaaattatc atcagtgaag ctaaatttgt aaatataatg
     1681 accgaaaaat taaatctcgt tgttcaagat tttatcttta aacatacagc caaagaagat
     1741 tcaaaaatag taaagtatta cgaagaaaaa tttaagaaat agtatttctc atttttgcta
     1801 tataaaa
//
LOCUS       DARGBD010000151         1790 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.151, whole genome shotgun sequence.
ACCESSION   DARGBD010000151 DARGBD010000000
VERSION     DARGBD010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.151"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..814)
                     /locus_tag="SFZ04_001772"
     CDS             complement(<1..814)
                     /locus_tag="SFZ04_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8066003.1"
                     /translation="MLFFEISNLNYAYDNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YEKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKK"
     gene            complement(827..1717)
                     /locus_tag="SFZ04_001773"
     CDS             complement(827..1717)
                     /locus_tag="SFZ04_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEG8066004.1"
                     /translation="MKKILLFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAANTLDVNVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FSKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTL
                     IQKYPQNENLYKENLDKFLAELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLT
                     QIPVEILGKEPKSKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDH
                     LSYDWENELLKTADAFSHNL"
BASE COUNT          577 a          245 c          257 g          711 t
ORIGIN      
        1 cttttttaaa ttctgttttt ttcaaatttc ttcttgtaaa ttcttgttcg catagttttt
       61 tgctatcgca atttttttca tcgcaaaaac aagtatttaa actcatttct acatcacaaa
      121 aatgagagtg attttcgtat aaatgtttta aaaatgaact tttttctttt tctttagtgt
      181 tagtatgcaa gaaaagttct ttgtttaaat gtgcaatttt atcgctataa gctaatacaa
      241 ggttgatatc gtgacaaatg agtaaaattc ccatgccttt ttggtgcaaa gagcttagaa
      301 gttcaaaaat ttgtatagca gacttgttat caacgcttgc ggtaggttca tctaaaataa
      361 gcatcttaca ttcactagct aaggctcttg cgataaaaac acgttgtctt tgtcctccgc
      421 ttagagaatc aattgttttg ttccaaaatt tttccattcc tacacttttt aaagcttgca
      481 tagctttttc tttatctttt ttctcataaa aaccaaaaat ttttttactt acaagtccca
      541 taagaacgat ttcaagtact cttggacaaa aattaggatt ggctagagtg tgttgaggaa
      601 catagcctat ttcttttctt tgaagagctt tgaaatggat ttcatttttg gattttaaaa
      661 gtcctaagat aagttttacg agtgttgatt ttcctgcacc atttggacct atgatagaga
      721 gaaagtcttt attgtcatag ctaagattga tgttttttaa gatgatttca ttatcataag
      781 cgtagtttag attagaaatt tcaaaaaaaa gcatcaaaaa acctgattat aaattatgag
      841 aaaaggcatc agcagttttt aaaagctcat tttcccaatc ataagataaa tgatctattt
      901 tgtaaatttt tgcatcacat tctttggcaa gtgtttttgc tgcattttca gggaaaccat
      961 tttgaacaaa aatgactttt aaatttttat ctttcattag agtgataagt ttttgcaaat
     1021 ctttactttt tggttcctta cctaaaattt ctacaggaat ttgcgtaaga ttatagcgtt
     1081 ttgcaaaata tgtccaagaa ggatgataaa ctacaaattc tctatttttt aatttttcta
     1141 attttgaggc aatttgtaaa tttaaactat ctaattctgc taaaaattta tctaaatttt
     1201 ctttatataa attttcattt tgtggatatt tttgaatcaa ggtgtcataa atatttaaag
     1261 ccatagtttg gactaaaata ggatctagcc aagtatgagg atcaaaatgc tcatgttcgt
     1321 ggtgttcatg ctcatgagag tgttcgtgtg tatcatgagt ttgaatcaaa gctatgtttt
     1381 tttgcatatt tacaacttga agttttgaaa aattttgttt aaatttatcc gtaaaaactt
     1441 tttcaaattc taagcctata gtgaaataaa tatcactttt ttcaagtttt ttcatagtac
     1501 ttggtttaaa ttcaaaatta tgctcattgc tatttggggg caaaataaca ttgacatcta
     1561 gagtatttgc agctattttt ttaacaaaaa atgcttgagg cgctatactg acactaacta
     1621 aattgctact agtattttgt tcttgctcta aatttttagc ttgtgtgaaa gtataaaata
     1681 tccctaaaga taaaataaat aatagaattt ttttcaaaat atttccttcg atataaattt
     1741 tttaaattat aacgatatta agcttaatac atagaatttt cgaagcgata
//
LOCUS       DARGBD010000152         1786 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.152, whole genome shotgun sequence.
ACCESSION   DARGBD010000152 DARGBD010000000
VERSION     DARGBD010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1786
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.152"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..1235
                     /gene="rny"
                     /locus_tag="SFZ04_001774"
     CDS             <1..1235
                     /gene="rny"
                     /locus_tag="SFZ04_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEG8066005.1"
                     /translation="YLCKSQKHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNE
                     AKEIILKKAEENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLIN
                     VINIKNDELKGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVI
                     ELLVEDGRIQPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKY
                     RASYGQNALAHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLG
                     AELCKRYKEHPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKR
                     VSELEDIAKSKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYP
                     GEIKVNVIRELRAVEYAK"
     gene            1244..>1786
                     /locus_tag="SFZ04_001775"
     CDS             1244..>1786
                     /locus_tag="SFZ04_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG8066006.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFAAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSK"
BASE COUNT          635 a          260 c          337 g          554 t
ORIGIN      
        1 aatacctttg caagtcacaa aaacacattc aaaacttaca atctgatgtt gataaattaa
       61 aaaataaata tcaagaaaaa cttgacgatg ttttaaaaat tttagaacat tcgacaggac
      121 ttacacaaaa tgaagccaaa gaaatcattc ttaaaaaagc agaagaaaat tctcgcgagc
      181 aaattgcaca tatagtaaga aaatatgaag aagaagcaaa aaatgaagct aaaagaaaag
      241 ctaatttcat cattgctcaa gctacttctc gttttgcagg tgaatttgca gctgaaagac
      301 ttatcaatgt tattaacatt aaaaacgatg aacttaaagg acgtatcatt ggtaaagaag
      361 ggcgcaatgt taaaaccttg gaaatggttt taggtgttga tattatcatc gatgatacac
      421 caggtgctat tatagtaagt tgttttaatc tttatcgccg tgctattgct acaaaagtta
      481 tagaactttt agttgaagat ggcagaattc aacccgcgcg catagaagaa attcacgaaa
      541 aagtgtgtaa agaatttgat agtgccattc tagaagaagg cgaaactata gttatggatc
      601 taggtttaaa taaaatacac cctgaaattg taaaactcat aggaaaactc aaataccgag
      661 caagctatgg acaaaacgct ttagcacatt ctttggaagt ggctcacctt gcaggaatca
      721 ttgctgctga gtgtggtgga gatgagaatt tagcacgtcg tgcgggaatt ttacatgata
      781 taggaaaagc attaacccat gattttgaag gatctcatgt ggatttaggt gcagaacttt
      841 gcaaacgcta caaagagcat cctgtagtaa tcaatgctat ttacgcacat catggacacg
      901 aagaagctac aagcatagaa tcagcagctg tttgtgcagc agatacttta agtgctgcac
      961 gacctggagc tagaagagaa gtgttagaag ctttcttaaa aagagtcagt gagctagaag
     1021 atatcgctaa aagtaaagaa ggaattaaaa atgcctatgc aatcaatgcc ggaagagaaa
     1081 ttcgcgtcat agccaatgct cagcttgtta atgatgatga aagtgtactt ttagctaagg
     1141 aaatagcagc tgaaattcaa gaaaaaatgc aatatcctgg tgaaattaaa gtcaatgtta
     1201 tacgtgaact tagagctgta gaatacgcta aataaggttt attatgcaag atatgattga
     1261 tactttaata aaatatggtt atattgtttt attcttttac tctttagggg gcgggatggt
     1321 tggaatttta gccgcaggag ttttaagttc tcaaggaaaa atggatctta gtttttgcat
     1381 tgctcttgct tttattgcta ataccatagg ttcaactttg ctttttatac ttggaaaata
     1441 ttacaaaaaa gacattatgc cttattttaa aaaacaccga cgcaagatag cccttgctat
     1501 gataaaaaca aaacaacatg gaattatttt acttgtaact caaaaattta tttatggttt
     1561 aaaaactttc attcccatag ctgcaggtat ggcaaaatat aattttatta aattttttat
     1621 tatcaatact ctagctagtt tggcatgggc tattgttcta ggttttgctg cttatacttt
     1681 tgggtatgtt attgaagcaa tttttgataa actgagttta tatccttatg ctgctccttt
     1741 atttttatta tttttagccg gaataatttg gctttattta agtaaa
//
LOCUS       DARGBD010000153         1720 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.153, whole genome shotgun sequence.
ACCESSION   DARGBD010000153 DARGBD010000000
VERSION     DARGBD010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.153"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..1322)
                     /locus_tag="SFZ04_001776"
     CDS             complement(<1..1322)
                     /locus_tag="SFZ04_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8066007.1"
                     /translation="MREELFLKNTQALFEVDEFLACTLRSLKYLTFALIQDENGINFK
                     KDDIFLYENPNKELLENLTLFKTKYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFE
                     DNLEILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIH
                     NDFYQQFYSTQIQNINTQLIEMIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQ
                     EFLKERRAKVENAIIVSTGPSLIKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYV
                     CMLERDDIVSKCFDNDFGDFNKGILFILASVVHKEVLDFLEKDQRAYMLVHRPLNFAA
                     SLKLDEYGYLGVGHSVSNMIYELAGALRFENIIFIGQDLAYGEDGSSHPKEHIHGSQG
                     EEIRGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNIITYN"
     gene            complement(1319..>1720)
                     /locus_tag="SFZ04_001777"
     CDS             complement(1319..>1720)
                     /locus_tag="SFZ04_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8066008.1"
                     /translation="KFIKSYNKIKNSFMSLQNSQENETLIKEIIKDIDKIKTQIDELY
                     NTQKDLMQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIK
                     AQENALIKNILPLEEKLKERKLDKWMERVRR"
BASE COUNT          574 a          248 c          229 g          669 t
ORIGIN      
        1 cagttgtagg tgatgatatt gagtttttct tttgcccaaa aaatatcttt ttcaaaagct
       61 tgacgaaaca aattccaagt aagttgtgtt cttactttgc cttttcctcc ataagctagt
      121 gtatattttt ctcctctgat ttcttcacct tgacttccat gtatatgctc tttaggatgt
      181 gaacttccat cctcgccata agctaaatcc tgtcctataa aaatgatatt ttcaaatctt
      241 aaagctcctg ctagttcata gatcatattg gaaacactgt gtcctactcc aagatatcca
      301 tattcatcaa gttttaaact agctgcaaaa tttaaagggc gatgtacaag catataagct
      361 ctttgatctt tttctaaaaa atctaatact tctttgtgaa ccacagaagc aagtatgaaa
      421 agtatgcctt tgttaaaatc gccaaaatca ttatcaaaac atttagaaac tatatcatca
      481 cgttctagca tgcaaacata atcaggcttt ataccatgtt tagctaaaat aggataagaa
      541 gaatccgcac aaaaaattgt agctttatta gcatattttt ttaacaaagg aagttgtttt
      601 ataagacttg gtcctgtaga aacaatgata gcattttcaa ccttagctct tctttctttg
      661 agaaattctt gaaaaattcc atgatttaac attttaggga gattatctag ggtatgtttg
      721 attccaacta aagaatcatg tggatcatta cctttgttta aaacgataaa tcgtatcatt
      781 tctatcagtt gagtatttat attttgtatt tgagtgctat aaaattgttg ataaaaatca
      841 ttatggataa aaagattaaa aatttttaca cttttttgaa tgatttcata agtaaaaagt
      901 gtggtgagtt gtgctgtatt aatatttgga gtataaaaaa gtattagttg ttcttttttt
      961 aattcttcgc taaaatcaaa taaatgaaaa gctaaagtta aaatttcaag attgtcttca
     1021 aaaatgataa tgtgtttatg ttgtttgttt ttacataaag ttttataaaa cattccattt
     1081 ccaaagccat aaaaaaacaa aacaggatat ttgttatatt tggttttaaa cagagtaagg
     1141 ttttctaaaa gctctttatt gggattttca taaagaaaaa tatcatcttt tttaaaattt
     1201 attccatttt catcttggat aagtgcaaaa gttaagtatt taagtgatct cagtgtacaa
     1261 gctaaaaact catcgacctc aaacaaagct tgagtatttt ttaaaaaaag ctcttctctc
     1321 accttctcac cctttccatc catttatcta attttctttc tttaagtttt tcttctaaag
     1381 gaagtatatt tttgatcaaa gcattttctt gtgctttaat atgtccataa actaattcca
     1441 taaattctaa atgttctttt atccaaagaa tacttttatt aaaagcatct tctttggttt
     1501 taggatttaa gacataaatt ctagcaagat taagttcaaa ttgagttagt aggggaccta
     1561 aaatttgcat caaatctttt tgagtattat aaagctcatc gatttgagtt ttgattttat
     1621 ctatatcttt aatgatctct ttgataaggg tttcattttc ttgagaattt tgtaaactca
     1681 taaaagaatt ttttatttta ttatagcttt taataaattt
//
LOCUS       DARGBD010000154         1600 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.154, whole genome shotgun sequence.
ACCESSION   DARGBD010000154 DARGBD010000000
VERSION     DARGBD010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.154"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            1..1428
                     /locus_tag="SFZ04_001778"
                     /pseudo
     CDS             1..1428
                     /locus_tag="SFZ04_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856720.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            1447..1590
                     /locus_tag="SFZ04_001779"
     CDS             1447..1590
                     /locus_tag="SFZ04_001779"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066009.1"
                     /translation="MDAMGIQILYTRSANFYVKMDAARAVHRFKHDGEHRARVYASLE
                     KYF"
BASE COUNT          620 a          181 c          282 g          517 t
ORIGIN      
        1 agcaaatgga ctacaaaata aaaattaaaa aatacattaa aaaatcaaaa aagccctgta
       61 aattttaaag agcaaaatac tacaaatatt gcaaatttac aaactgatca aaatgaagct
      121 aaggtttttg taagagagta tgttttgcat atcgataata aagatttgac atttaaaaaa
      181 ttaagaatta gcgaaaaata aattcaagat gcaatagctg aatatcgcaa ccaagaatta
      241 agcttacaaa ttttaaaaga tataacaaac attatagctt attattgtca attaagtagc
      301 catccttcgg caactgctta tataccaccg caagatttaa gttctaacaa agtgcaaatt
      361 aacatagctt ttggaacttt taggaaaagt aatcattaaa aacaacttag gtgtcagaga
      421 ttatgcttta gagagtaaat tgaacaaaaa tcttaaaggg aaagttatca caactaaaaa
      481 tgtggaaaat gaaatttata aaatcaatga aatatacgga atccaaacca atgctaattt
      541 acaatcaggt gatggttgtg gagaaagcga tgttattata gaagtaaaca aaggcgagat
      601 agtgtaactt taactttata ttctaacaac tatgggacta aagaaacagg tcgttttaga
      661 gcaggaatga gtcaaagttt aaacaatata gcaagataag gggataactt aaatttttat
      721 cttcaagata atgataaaaa tcaaacagat tatgggatta attatagtac ttttataggg
      781 aatttaaaaa ttactctatt tgcaactcaa ggacattata ttcctggcag aatttataga
      841 aatcttagtt tttataggga ctctatgaat gttggagtaa atttttctta tcctgtgttt
      901 ttatatactg agtattcttt atatcttgtt tcgggtttta ctcataaaaa gattaaagat
      961 tattatcttg atggtttagt aagcaatgaa aaagcgagaa atagtgtaaa tttgggcata
     1021 gaaagaactt atagaggttt ggagaataat gtcctaagtt atactttaaa ttttatatat
     1081 ggtaatgttg aaaatgatgg tgatttttct ggatttaatg gagtaaattt aggaaatttt
     1141 ggaaaaatga atttaaattt aagcaacaaa tatcaattct aagaacgctt aactcacatt
     1201 tttcaactta attatcaaaa agttatcagc gatgctgttt tagatagtag tgaatccgta
     1261 tctttaggta gaccttgtgg tatatgtgtt tgtttagaag gtgagggaag tgcggataat
     1321 gttgtttctg gcgccttggg aataagattt caaacacctt tagaagggct ttactcgact
     1381 cctttttatg atatagggta ttcttggtat gaaaataaaa aatattaaag tgaaaatcat
     1441 tatcttatgg atgcaatggg tatacaaata ctctatacaa gaagtgctaa tttttatgta
     1501 aaaatggatg ctgcaagagc tgttcatcgg tttaaacacg atggagaaca tcgagcaaga
     1561 gtttatgcaa gcctagaaaa atacttttaa ctttggggtg
//
LOCUS       DARGBD010000155         1589 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.155, whole genome shotgun sequence.
ACCESSION   DARGBD010000155 DARGBD010000000
VERSION     DARGBD010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.155"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..243
                     /locus_tag="SFZ04_001780"
     CDS             <1..243
                     /locus_tag="SFZ04_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066010.1"
                     /translation="ESFEEDFIDKGLEQKEYLKVDESMSKFFQEQFESIVKDCKDFNE
                     ALNKLKENFSSLEQSEFEKHLFIALNNSGILGYLED"
     gene            245..1483
                     /locus_tag="SFZ04_001781"
     CDS             245..1483
                     /locus_tag="SFZ04_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066011.1"
                     /translation="MTGAKIGFFSEPTKAVDFLKNKKPELSFDYDELSYSTHKKVFTI
                     AKLMDESLLKDMQDTLVNAIKNGDKFSTWSKIAEEKLKAKGWWGSKEVINPKTGEVKK
                     THFNSARLKKIFEENSRKAKAKAIYENQMKSTKPYFKYCTQKDSLVRDKHRAFDGIVL
                     HKDDPFWDSHYPHVTMHDYGCRCYVLEVGESEVKGLKIPPSNAKESEFNGFNDEELLD
                     ELYKQKNTEVIQNFIKLDMLSAAAKKTKEVKSFTHQKELYTWQKSLDDMVDEVIIKDN
                     QKYPINFIQVGKMDKSTKEFLEKLNKKDLEDLYFTLSKNNLLHASPKRKASYNQALSA
                     DEIKQIVKVLDEAKEVYWDNANNSLLYFFEDKKDASRINKIVITPDYKLKKFGKTNAI
                     VTLGKVEAINKDNKTYIKIR"
BASE COUNT          647 a          201 c          279 g          462 t
ORIGIN      
        1 gagagctttg aagaagattt tattgacaaa ggattagaac aaaaagaata cttaaaagtc
       61 gatgagagca tgtcaaagtt ttttcaagag caatttgaaa gcattgtaaa agattgtaaa
      121 gattttaacg aggcactcaa taaacttaaa gaaaattttt ctagtttaga gcaaagcgag
      181 tttgaaaaac atctttttat agctttaaat aattccggta ttttaggata cttggaggat
      241 taaaatgaca ggtgcaaaaa taggattttt ttcagaacct actaaagctg ttgatttttt
      301 aaaaaataaa aagccagagc ttagttttga ttatgatgaa ctttcatatt caacccataa
      361 aaaagtcttt actattgcta agcttatgga tgaaagcttg ttaaaagata tgcaagatac
      421 tttagtaaat gctattaaaa atggggataa atttagcact tggagtaaga ttgcagagga
      481 gaaattaaaa gctaaaggtt ggtggggttc aaaggaagtt ataaacccta aaacaggtga
      541 agttaaaaaa actcatttta atagtgcaag attaaaaaaa atctttgagg aaaactcaag
      601 aaaagctaaa gctaaagcta tctatgaaaa tcaaatgaaa agcactaaac cttattttaa
      661 atactgcacc caaaaagatt ctttggttag ggacaaacac agagcctttg atggcatagt
      721 tttacataaa gatgatcctt tttgggatag tcattatccg catgtaacta tgcatgatta
      781 tggttgcagg tgttatgttt tagaagtagg tgaaagtgaa gttaaaggcc taaaaatacc
      841 accatcaaat gccaaagaaa gcgaatttaa tggctttaat gatgaagagc ttttagatga
      901 gctttataaa caaaaaaaca ctgaagtcat tcaaaacttt ataaagcttg atatgttaag
      961 tgcagcggct aaaaaaacaa aagaagttaa aagcttcact catcaaaaag aactgtacac
     1021 ttggcaaaaa agcttagatg atatggtgga tgaagtcatc attaaagata atcaaaaata
     1081 tcctatcaat ttcatacaag taggtaaaat ggataaaagc accaaagagt ttttagaaaa
     1141 acttaataaa aaagacttag aagacttata ctttacactg agcaaaaaca atcttttaca
     1201 cgcaagtcct aaaagaaagg caagttataa tcaggcttta agcgcggatg aaatcaagca
     1261 aattgttaaa gttttagatg aagcaaaaga agtttattgg gataatgcaa ataattcttt
     1321 attgtatttc tttgaagata aaaaagatgc tagtcgtatc aataaaattg taattacccc
     1381 tgattataag ctaaagaagt ttggtaaaac caatgcaata gttacattag gaaaagtaga
     1441 agcgattaat aaagataata agacatatat taagatcaga taaggcggtg agacttgcac
     1501 tcacaataca taccccaatt aatttggact atcctactac tacattttag gtatcaacct
     1561 tatctaatta agataatttt agcttgatg
//
LOCUS       DARGBD010000156         1576 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.156, whole genome shotgun sequence.
ACCESSION   DARGBD010000156 DARGBD010000000
VERSION     DARGBD010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.156"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1576
                     /locus_tag="SFZ04_001782"
     CDS             <1..>1576
                     /locus_tag="SFZ04_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8066012.1"
                     /translation="KDTSIKNNGGGYNENLLYQDPIKELQAMLNTYNDKYLLYPVLYF
                     YGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQNSRLMVLENDKLQ
                     TQDYTELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAETFKNIILRNGNDP
                     LDALQGIEQFVYNLPSMITHPSYKELLSKRKGISDTAIIVSTGPSLTKQLPLLKKYAN
                     KATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIVFVCAGVVHP
                     KAIEYLKGRNLVITQKVLAFPYYINLKDFSYAAVGFSVAHTLSYLATYLSHKNIIFIG
                     QDLAYAENGNSHPDDYQNSASYESQMYEHILTKAYGEKEEVKTHSIWLLFKNWFENEM
                     IPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNE
                     FLLKAYYKVYQSIKHCRDFSKILSNDFEKIQSVYLSLNEKEEYLNLAIEKIDEFKNKL
                     EDIKQMQDLYEILQPLR"
BASE COUNT          587 a          188 c          244 g          557 t
ORIGIN      
        1 taaaagatac aagtataaaa aataatgggg gggggtataa tgaaaattta ctttatcaag
       61 atcccattaa agagttgcaa gctatgttaa acacttacaa cgacaaatac ctactttatc
      121 ctgtattgta tttttatggt tttggaaatg gagttttatt taaagcttta ttacaaaata
      181 aaaatcatca gcatattgtt gtttttgaaa aagatataga aatcatttgg atcatgtttc
      241 atatcttaga tttttcaaat gaattgcaaa attcaagatt gatggttttg gaaaatgata
      301 aattacaaac tcaagattat actgaacttt gttcttttaa acctttcttt caattttcta
      361 gaatttattt tttagaactg atgagtcatt attatgaaag atttcatgaa gatgttttgg
      421 agttaaataa gaaattagca gaaactttta aaaatatcat tttaagaaat ggtaatgatc
      481 ctcttgatgc tcttcaaggt atagagcaat ttgtctataa tcttccttca atgatcactc
      541 atcctagtta taaagaatta ctttctaaaa gaaagggtat aagtgataca gctattattg
      601 tttctacagg accatctctt actaaacaac ttcctttatt aaaaaaatat gctaataaag
      661 ctacaatttt ttgtgcagat tcttcttatc ctattttagc taaacatggt ataaagcctg
      721 attatgtttg tatgctagaa agaactgaaa ttactgctga gttttttaat catgattttg
      781 gggaatttga taaggatatt gtgtttgttt gcgcaggggt tgttcatcca aaggcgattg
      841 agtatttaaa gggtagaaat ttagtcataa ctcaaaaagt tcttgctttt ccatattata
      901 taaatcttaa agatttttct tatgctgccg taggatttag cgttgcacat acattatctt
      961 atctagcaac ttatctaagt cataaaaaca tcatttttat aggacaggat ttagcttatg
     1021 ctgaaaatgg caattctcat cctgatgatt atcaaaattc agctagctat gaaagtcaaa
     1081 tgtatgagca cattttaacc aaagcttatg gcgagaaaga agaagttaaa actcatagta
     1141 tatggctttt atttaaaaat tggtttgaaa atgaaatgat tccaaatact agaaaaatgg
     1201 gtatcaccac ctataactgt accgaaggtg gagcaaggat agaaggaacc atagaaaaac
     1261 cttttttatg ggcttgtgag aatttacttg ataaagattt aaataaacct tttgaaaaat
     1321 tagaaccttt aagtttaaat aaacaaaatg aatttttact taaggcttat tataaagttt
     1381 atcaaagtat taaacattgt agagatttta gtaaaatact cagcaatgat tttgaaaaaa
     1441 tacaaagtgt atatttgagt ttaaatgaaa aagaagaata tttaaattta gctattgaaa
     1501 aaatagatga gtttaaaaat aaacttgaag atataaaaca aatgcaagat ttatatgaaa
     1561 ttttacaacc tctgcg
//
LOCUS       DARGBD010000157         1370 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.157, whole genome shotgun sequence.
ACCESSION   DARGBD010000157 DARGBD010000000
VERSION     DARGBD010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1370
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.157"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..294
                     /locus_tag="SFZ04_001783"
     CDS             <1..294
                     /locus_tag="SFZ04_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066013.1"
                     /translation="FISSLFIKKKQNLSKIIHFKVLKDDLKPNVKEKIHFFAMFFTLF
                     KLMAYVVLVAGFLFLHRQDKLDIFAYICGISSLLVCVFIFILYIKKYESKKNY"
     gene            272..>1370
                     /locus_tag="SFZ04_001784"
     CDS             272..>1370
                     /locus_tag="SFZ04_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG8066014.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALIGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLA"
BASE COUNT          394 a          177 c          220 g          579 t
ORIGIN      
        1 ttcatttcat cactttttat caaaaaaaaa caaaatttat caaaaattat tcattttaaa
       61 gttctaaaag acgatttaaa gccaaatgtt aaagagaaaa tccatttttt tgctatgttt
      121 tttactctct ttaaattgat ggcttatgta gtattggttg ctggattttt atttttacat
      181 cgccaagata aattagatat ctttgcttat atttgtggaa tttcatcctt gctagtttgt
      241 gtgtttattt ttattttata tataaaaaag tatgagtcca aaaaaaatta ttaaatcaat
      301 gacagcactt tttgctggta tggcattttt atttgcaggt aatgccttga tagtaagctc
      361 tataggtgtt atattaaaag aaaacggaga aagttcttta gctgttggag tagtaagttc
      421 ttgttttttt gtaggcgctc ttattggaac catcagtgct cataaaatta tttctcgtat
      481 aggtcatata cgctcttttg ggctatttgg tgctattttt ggaatttcag ctatgcttca
      541 tacagtaagc gaaaatctta ttttttgggc tgttttaaga tttttcatag gaatttgcta
      601 ctatggactt ttaatggtca tagaatcatg gcttaatgaa aaaagcaaaa atgccattcg
      661 atctagaatt ttaggttttt atgaaattgt tttttatctt gcgtttggta ttggagtttt
      721 aatcatagcg ttaaatttaa gcaaacatag tgtatttatc ctcagtgcaa ctttaatttt
      781 actttcatct ttacctttaa atctaattaa aatcaaagaa cctgttttac ccgcatcaag
      841 tcctatttct atacctaaaa tttttgatat agctccttta gctatcgtca caagctttat
      901 agccggaatg cttataaatg gctttttttc tatggcatct ttatttatac ttttgcaagg
      961 ttttgataca aaagcggttt cttattttat attttgtggg gttttaggtg gttttattgc
     1021 acaaaccatc ataggaacta tttcagacaa acttggtcgc aaatttgcca ttatcacttg
     1081 tgcaagtata ggatttatca ctatgcttat atttatcttt tttaaacttc atttatatat
     1141 gcaatatttt ttaggaatta ctcttggtat aggaatattt tgcttatatg ctttagcact
     1201 tgctagagca aatgatgttt tagtaagcaa aaataaaggt gtagagttag gtcgtggggt
     1261 tcttttttgt tattctttgg gctctttgtt tggcccttta attttaggtt ttttaatgca
     1321 atattttgaa atcaaaggtt ttatatggtt ttatatagtt tctttagcat
//
LOCUS       DARGBD010000158         1356 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.158, whole genome shotgun sequence.
ACCESSION   DARGBD010000158 DARGBD010000000
VERSION     DARGBD010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1356
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.158"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(49..582)
                     /locus_tag="SFZ04_001785"
     CDS             complement(49..582)
                     /locus_tag="SFZ04_001785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066015.1"
                     /translation="MKNILLSLMFVFLFTGCFNNKPKCDDEDVKLTLKSILDNDEWVY
                     VEYGLNEQSLRALRINSNGMDIRDLEAALSTDTLGVLRAHFKPLLDLKDYANEVVYTS
                     FESFITKDSKDKKTSFCMGQLKFTYPQMPNEMREKYSRGTLKGVLFDGGEYETQISYS
                     ARFSDDKKQVFVELLDY"
     gene            complement(582..842)
                     /locus_tag="SFZ04_001786"
     CDS             complement(582..842)
                     /locus_tag="SFZ04_001786"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066016.1"
                     /translation="MSEKYTPFEVEPTLLYEKDTYQIVAGKAYTNKDEQFCIGLKSNG
                     FPINSYLIFPPQLSSDLLKSLLGQDGAKNDEIIEFIKIIMEK"
     gene            complement(885..1302)
                     /locus_tag="SFZ04_001787"
                     /pseudo
     CDS             complement(885..1302)
                     /locus_tag="SFZ04_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778403.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          482 a          252 c          139 g          483 t
ORIGIN      
        1 ataaatttta tatagacaat gaaaataaaa tttcattgtc aaaataaatt aataatctaa
       61 aagttctaca aaaacttgct ttttatcatc actaaatcta gcactataag aaatttgagt
      121 ttcgtattcc cctccatcaa ataaaactcc ttttaaagta cctcttgaat atttttctcg
      181 catttcatta ggcatttgtg gataagtaaa ttttaactga cccatacaaa aactagtttt
      241 tttatccttg ctatctttgg ttataaaact ttcaaaagaa gtataaacca cttcattggc
      301 ataatctttc aaatcaagca aaggtttaaa atgcgccctt aaaaccccaa gcgtatctgt
      361 agataatgca gcctctaaat cccttatatc cataccatta gaatttatcc ttaacgccct
      421 taaggattgt tcatttaaac cgtattcaac ataaacccat tcatcattat ccaaaatact
      481 ttttagtgta agcttaacat cttcatcatc gcattttggc ttattgttaa aacatcctgt
      541 aaataaaaaa acaaacatca aacttaataa aatatttttc attatttctc cattattatt
      601 ttaataaatt ctatgatttc atcattttta gcaccatctt gccccaaaag actttttagt
      661 aaatccgagc taagctgtgg aggaaatata agataagaat ttattggaaa accatttgat
      721 tttaagccta tgcaaaattg ttcatcttta tttgtgtatg cttttcctgc aacaatttga
      781 taggtatctt tctcataaag taaggtaggc tctacttcaa aaggtgtata tttttcactc
      841 attttcatct ccattctttc attggtttta aaataaaata atcatcactg tatgatattt
      901 gcaatttttt cataattttg tttgcgaagt tttttaccta ctaaaaacat atctacaatc
      961 caccaaatag tccaattgac tatcactaat atatgctatg ttctgcaaag atttacttgc
     1021 aacaatatta aaaattattg gaataatcac aaatgctaaa cgcacaaaac ctaaaaccat
     1081 atcacctatc ataaaacgcc ctactccaaa agggccaaat aaaaaagttc ctacccaaaa
     1141 caccaaagta gggcttttta gtttaagcat aggaagttga tttaacacat ctttttttct
     1201 ttcttcgctt aagcgttcaa atttttcttt tagcgtaatt gccgctaaac catctcttgg
     1261 taacttatcg ccaatattag aaagaactga attaaaatcc ataacttctc cttgaaaatt
     1321 aaaaaatatc tcgaattatt ccatactata acttaa
//
LOCUS       DARGBD010000159         1344 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.159, whole genome shotgun sequence.
ACCESSION   DARGBD010000159 DARGBD010000000
VERSION     DARGBD010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1344
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.159"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..249)
                     /locus_tag="SFZ04_001788"
     CDS             complement(<1..249)
                     /locus_tag="SFZ04_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8066017.1"
                     /translation="MWVSSKEFAEKYNLNRDTIIKSANRAHKKSKKFCLLKFNILYFK
                     YSKGVGGHAGKTLQIWSKPLSKEEAKLVEQGFNIEDISN"
     gene            complement(250..441)
                     /locus_tag="SFZ04_001789"
     CDS             complement(250..441)
                     /locus_tag="SFZ04_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066018.1"
                     /translation="MKNKLVKTMSAKGVKLMTWAKAKGLNHKDMTILYDLSHGRIKGI
                     RGRAKELKEMLEKDGFKVA"
     gene            486..800
                     /locus_tag="SFZ04_001790"
     CDS             486..800
                     /locus_tag="SFZ04_001790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066019.1"
                     /translation="MQANLKKILIEMQTQIHDLLLLAQEQHNSYNELTKKLNNDFLKI
                     TKELRNPLDKEQAAFATQALEKHFQECNSLTDEFSKQSQKAFDDRFKKILENYQKIKD
                     LS"
     gene            990..>1344
                     /locus_tag="SFZ04_001791"
     CDS             990..>1344
                     /locus_tag="SFZ04_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8066020.1"
                     /translation="MELSLRMKEYREYFGWTQTDLSEKSGVSISTIKKYEAGSVDNFT
                     YGNLKKIASAFNLSPASFISENMSDNSPTISNKICPTNVKNCPTSNVILENFTQTLND
                     DMINIPFFENVRASAG"
BASE COUNT          466 a          223 c          165 g          490 t
ORIGIN      
        1 attgcttata tcttctatgt taaaaccttg ctctactagc tttgcttctt ccttgcttaa
       61 aggtttagac cagatttgaa gggttttacc tgcatgacca ccaacacctt tggagtattt
      121 aaagtataat atattgaact ttaaaaggca aaatttttta ctttttttat gagctctatt
      181 agcggatttt attatagtat ctctatttaa attatatttt tctgcaaatt ctttactact
      241 tacccacatt caagccacct taaacccatc tttttctagc atttctttta attctttagc
      301 tctacccctt atacccttaa tcctaccatg agacaaatca taaagtatag tcatatcttt
      361 atgatttaag cccttagcct tagcccaagt cataagcttt acacctttag cactcatagt
      421 ttttacaagt ttatttttca tcttttttcc taaatatgtt ataatcaatc aaaaaaggag
      481 cttttatgca agcaaatctt aaaaaaattc ttatagaaat gcaaacacaa atccacgatt
      541 tattactttt agctcaagaa caacataata gctataatga gctcaccaaa aaactaaata
      601 acgattttct aaaaataaca aaagagctta gaaatccttt agataaagaa caagctgctt
      661 ttgcaacaca agcacttgaa aaacactttc aagagtgcaa ttctctaaca gatgaatttt
      721 caaaacaatc tcaaaaagct tttgatgatc gttttaaaaa aattttagaa aattatcaaa
      781 aaattaaaga tctttcctag gtttagtttt tatgcctata taacctgtca gtatgatagg
      841 tttttttaaa cacttgctct ttttaggttt attctttttc ttcatatttt tcctttaata
      901 ttatttttgc ttttttgtgt taccattacc gaaaaagtta tgtaattata gtataattta
      961 ttgaacttgt caagtatttg gagtaaaata tggaactttc tttaagaatg aaagaatata
     1021 gggagtactt tggttggacg caaactgatt tatctgagaa atctggcgta tcaataagca
     1081 caattaaaaa gtacgaagct ggatcagttg ataattttac ctatggcaat ttaaaaaaaa
     1141 ttgcttcagc ttttaatcta tctccagctt catttattag tgaaaatatg tccgacaata
     1201 gtccgacaat atctaacaaa atatgtccga caaacgtaaa aaattgtccg acaagcaatg
     1261 taattttaga aaattttact caaaccttaa acgatgatat gataaacatt cctttttttg
     1321 aaaatgtaag agcaagtgct ggaa
//
LOCUS       DARGBD010000160         1331 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.160, whole genome shotgun sequence.
ACCESSION   DARGBD010000160 DARGBD010000000
VERSION     DARGBD010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.160"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..657)
                     /locus_tag="SFZ04_001792"
     CDS             complement(<1..657)
                     /locus_tag="SFZ04_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG8066021.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIASSVRAKYYLLDEPSAFL
                     DKNTTLLFKKAILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     L"
     gene            complement(659..>1331)
                     /locus_tag="SFZ04_001793"
     CDS             complement(659..>1331)
                     /locus_tag="SFZ04_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG8066022.1"
                     /translation="DGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIGFPLGF
                     ILGFFDFKIKRFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKALILGQ
                     FILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVVALAYG
                     RIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCLNFITH
                     KLKRT"
BASE COUNT          487 a          203 c          179 g          462 t
ORIGIN      
        1 tagttcaaaa acattagtat tttcaaattc taaaatttct ccactgtgta aataaagctt
       61 tttttgcgcc aaagaatcta aaaaatgttt atcatgactt gcgattaaaa aacctgtatt
      121 gaaattttca tgcattttaa gaatagcttt tttaaataaa agtgtagtat ttttatccaa
      181 aaaagcactt ggttcatcaa gtaaataata cttcgctctt acgcttgaag ctatagcaaa
      241 agctattttt tgactttgtc ctgatgaaag ttcattagga tgtttactta aaagactttc
      301 atctaaattt aaaaacatca aactttcttt tatgcgttct tcaatatctt ctttaatccc
      361 ataagttttt aaggtaaata aaaaatttgc ccttacacta cgatttaaca aaataggctc
      421 tggaaaaagc aaataaattt cacgcttttg tttattatta ggtttaaaat ttccaaaata
      481 agaaatattt tttgaaaaat ctccttctaa aaattttaat attcttaaaa atgtagattt
      541 tccacttcca ttcgctccca ttaagatgct aattttactt gtatcaagtt ttaaattttt
      601 gatttttaaa acttctttgt tttgatagtt gaaaaaaaga ttagaaattt ctatcatttt
      661 atgttctttt gagtttgtgc gtgatgaaat ttaaacaaaa ggcaatgaga attaaaacca
      721 aagccaaagc tataccgcta gcaaattcgc ctttgtttgt ttcaagagaa atagctgtgg
      781 ttatggttct agtatcgtat ttgatatttc cacctactat catcgctact cctacttctg
      841 ctacaatgcg tccataagct agtgcaacga cgctaatcaa agcaaagcgt aattcataaa
      901 tcatcgttaa aacaagtttt aaaggactta ggtgaaaaga ttttataagt aaaaaatgtt
      961 ttttattcat attttctatc aaatttgaaa aaagtgcgat cactatagga agcgctaaga
     1021 taaactgccc taaaattaaa gcctttatag taaaaagtag tccaaattct cccaaaggtc
     1081 ctcgacttga aatcagcgca taaagtataa gtcctactgc aactgttgga aaagagaggc
     1141 tagtatctat gataagtttt ataaagcgtt tgattttaaa atcaaaaaag cctaagataa
     1201 atcccaaagg aaaacctata agcaaagcta aaactataga aatacttgag cttaaaagtg
     1261 tagtttttat agctgaaatt acgctttcat cagcattgaa aagtaaaaat aaagcctgtt
     1321 taaaaccatc a
//
LOCUS       DARGBD010000161         1312 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.161, whole genome shotgun sequence.
ACCESSION   DARGBD010000161 DARGBD010000000
VERSION     DARGBD010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1312
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.161"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..727
                     /locus_tag="SFZ04_001794"
     CDS             <1..727
                     /locus_tag="SFZ04_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HEG8066023.1"
                     /translation="HNFTSFVLLDEVDFNFSELKSILEDKFNIKIADENFTKEGVIFS
                     YENMLVTLNLIKNPIPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQDQSKLEQ
                     AKMFTKIAALCLENKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYVSVYPSE
                     NGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKDILKFED
                     GKEIKFIKSQGISVENESLKIIF"
     gene            793..1209
                     /locus_tag="SFZ04_001795"
     CDS             793..1209
                     /locus_tag="SFZ04_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG8066024.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQPNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
BASE COUNT          497 a          144 c          213 g          458 t
ORIGIN      
        1 tcacaatttt acctcttttg ttcttcttga tgaagttgat tttaattttt cggagttaaa
       61 aagcatttta gaagataaat ttaatataaa aatagctgat gaaaatttta ccaaagaggg
      121 cgtgattttt tcatatgaaa atatgttagt tactctaaat ttgattaaaa atcctatacc
      181 taatcacgaa gcagaatact atgcaaattt taattttatg tggaaagatg ccttagagca
      241 aactaaaaaa cataaagctc atcttcttat agcggtgcta agtcaagatc aaagcaaatt
      301 agaacaagct aaaatgttta cgaaaattgc agctttatgt ttggaaaata aacatgcttt
      361 aggtttttat acaggtgcag ttgttttaga gcccagtttt tatatagaaa atgcaaaaat
      421 gttagatgat aatcgcttgc cggtatataa ttggatatat gttagtgttt atcctagtga
      481 aaatggagtt aatgcttata cttatgggct tagaaatttt gataaattag aacttgaagt
      541 ttgtgattta aacatagaag aaaaagaact tttcttttgt atttatgata ttgttttgca
      601 tattttaact tatgatatta atctaaaaga taaagatatt ttaaaatttg aagatggaaa
      661 agaaataaaa tttataaaaa gtcaaggtat aagtgttgag aatgaaagct tgaaaattat
      721 tttttaagtt tcacattcac ttcacagttt tgagttaaac tttcgccaac caagacaaaa
      781 aaaggagaaa ttatgaaagc aaaactaact ttacttgctt tgttgggtac tacggtgctt
      841 ttagctaaag atatggttgt tcctgctagc gaacttccaa ataatgccaa agaatttatt
      901 tctaaaaatt ttaaaaccgc tcaaattggt ttggtgaaaa aagatataga ttcttatgat
      961 gtgattttaa atgatggaac tgaaattgat tttatgatca atggagagtg gaaagaagtt
     1021 gatggaaaat ataaggcttt gccacatact atcttaccta atgttatgaa aaaagtgagt
     1081 gcaactcaac caaatgctca aattcttgaa gtagataaag aaattaatgg ttataaattt
     1141 aagtttaata acaatatgga agtttataca gatatgcaag gaaatatcct aggtcaaaaa
     1201 ttagattaat ttttgaaaat ttaactccct tagaaaattt gatgcaaaaa tttggaagca
     1261 tagtcttcca aatttttatt ttttgattgc aaaacccaaa atatatttag tt
//
LOCUS       DARGBD010000162         1298 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.162, whole genome shotgun sequence.
ACCESSION   DARGBD010000162 DARGBD010000000
VERSION     DARGBD010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.162"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>1298
                     /locus_tag="SFZ04_001796"
     CDS             <1..>1298
                     /locus_tag="SFZ04_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG8066025.1"
                     /translation="LNTINLELQKLSFDENLKSRLQKTLEKFQNLEFNIAITGVMNAG
                     KSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKKEWQNILESSHFNAD
                     LKEFIDKLDKSVNIEDFIKVKPLIQNIALCELKDFSSAKNKISALIKKIEIKSHLEFL
                     KNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLTQKDADFLVHCLLNS
                     RLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVEKIDFLCVSAKMASD
                     FYKGLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKELHLELKNILSEYEMQ
                     NRLIKENKQGVSEENQKLLLELQKQNILLKEAQDEISNSVAKLKNIDSGIDNLVLLLA
                     KKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGIND"
BASE COUNT          523 a          138 c          219 g          418 t
ORIGIN      
        1 ttaaacacca ttaatttaga gcttcaaaag ctaagttttg atgaaaattt aaaatcaaga
       61 cttcaaaaaa ctttggaaaa atttcaaaat ttagagttta atatagccat cactggcgtg
      121 atgaatgcag gaaaatcaag ccttttaaat gctcttttaa aagaagattt tttaggcgtt
      181 tcaaacatac ctgaaacagc taatttaaca gtattaagtt atggtaagag cgaagaagca
      241 aagatatatt tttgggataa gaaagaatgg caaaatatac ttgaaagttc gcactttaat
      301 gcagatttaa aagaatttat tgacaagctg gataagagtg taaatataga ggattttatc
      361 aaagttaaac ctttaataca aaatatcgca ctttgtgagc ttaaagattt cagttcagct
      421 aaaaataaaa tttcagcttt aattaaaaaa atagaaatta aaagtcattt agaattttta
      481 aaaaataata tttccatagt tgatactcca ggacttgatg atgttgtagt tcaaagagaa
      541 attgttacaa atgagtatct tagagaaagt gattttttaa ttcatttaat gaatgcttct
      601 caaagcttga ctcaaaaaga tgcagacttt ttggtgcatt gtcttttaaa ttcaaggctg
      661 agtaagtttt taattgtttt aactaaagcg gatttgttaa gcaaaaagga tttagaagaa
      721 gtcattgttt ataccaagga aagcttaaaa tcaagacttg tggatttaga tgaaaatttg
      781 gtggaaaaga ttgatttttt atgtgtgagt gctaaaatgg caagtgattt ttataaaggt
      841 ttagcaccta aggaaagttt gcaaaaaagt ggtatgcaag aatttgaaaa ctatcttttt
      901 aacgagcttt atgcaggaga aaaaagcaag attgccttaa gagcttacaa aaaagaatta
      961 catttggaac ttaaaaatat tctaagcgaa tatgaaatgc aaaatcgtct tattaaggag
     1021 aataaacaag gtgtaagtga agaaaatcaa aagcttttac ttgaacttca aaagcaaaat
     1081 atcttattaa aagaagcaca agatgaaatt tcaaattccg ttgcaaaact taaaaatata
     1141 gatagtggca tagataatct tgttttactt ttggctaaaa aattaaaaga acgtttgata
     1201 gatgagttta aatatttgaa aaataatgca caaaagctta atctttctcg tattttaaat
     1261 atagttgata ttaccacaaa agatgggatt aatgatat
//
LOCUS       DARGBD010000163         1287 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.163, whole genome shotgun sequence.
ACCESSION   DARGBD010000163 DARGBD010000000
VERSION     DARGBD010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.163"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..192
                     /locus_tag="SFZ04_001797"
     CDS             <1..192
                     /locus_tag="SFZ04_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066026.1"
                     /translation="LVEAKEVHQKSLAKEALKTQRELEEIKNNANADELILNAKKEIN
                     NDESEFDMEAFVEKKYFAG"
     gene            363..1286
                     /locus_tag="SFZ04_001798"
     CDS             363..1286
                     /locus_tag="SFZ04_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8066027.1"
                     /translation="MQLVELTKKFLSTQNISQNNLSDRLGINKSYMVGYMKEGSSYKY
                     ASKVEPLLEKYIKSFVEEKSVKELQTPFIATKDAKAINVTIESAMSNREMGVIIGEAG
                     TGKSRAIKEYAAKNGTRVVLFEATTETSKRMLLVGLENKLNVCFKGSLDDKIRGIASE
                     LARTSKVLIIDESEHLPFRALECLRRIYDFSNTALILVGTRKLKNNLTGIGRNDYNEY
                     GQLSSRIGAKWELKGLCYQNKEGLKDEDLKTLCNHFDVEEKKAIDLVFNLARGNFRKS
                     EKLLKRACEFADGKAVELKHIEAAASFLMLG"
BASE COUNT          485 a          180 c          280 g          342 t
ORIGIN      
        1 ctcgtagaag ctaaagaggt gcatcaaaaa tcccttgcaa aagaagcctt aaaaactcaa
       61 agagaattag aagagattaa aaacaatgct aatgcggatg agcttatttt aaatgctaaa
      121 aaagaaataa ataacgatga aagcgagttt gacatggaag cttttgtcga aaagaaatat
      181 tttgctggtt aaaaattgtt taaagcttga ttaattcaag ttttaaagag tttttataaa
      241 gctctaaaac aaagatgccc ccacttcagt gggacggggg ctttaggtgg atgcaaggag
      301 caaagctcct gctcacaaag cggaatttac ttccgctgtg aagttaagag aaaggataaa
      361 aaatgcaatt agtagaactt actaaaaagt ttttaagcac ccaaaacatc tctcaaaaca
      421 atctctccga tcgtttaggg attaataaaa gctatatggt gggctatatg aaagaaggaa
      481 gtagctataa atacgcttca aaagtagagc ctttacttga aaaatacatt aaaagctttg
      541 tggaagaaaa aagcgtgaaa gagcttcaaa caccttttat tgccactaaa gatgcaaagg
      601 cgattaatgt aaccattgaa agtgccatga gcaatagaga aatgggagta atcattggcg
      661 aagcggggac tggaaaaagc agagccatta aagaatatgc cgctaaaaat ggaacaagag
      721 tggtgctttt tgaagcaaca actgagacaa gcaaaagaat gcttttggtg gggcttgaaa
      781 ataaactcaa tgtgtgtttt aaaggttctt tggatgataa gattagaggc attgctagcg
      841 agttagcaag aacttcaaag gttttaatta tagatgagag tgagcatttg ccgtttcgtg
      901 ctttggagtg cttaagacgc atatatgatt tttcaaatac tgctttaatc ttagtaggta
      961 ctagaaaact taaaaacaat cttacaggca ttggaagaaa tgattacaac gagtacggac
     1021 aactaagctc tagaattggt gcaaaatggg aattaaaagg actttgctac caaaacaaag
     1081 aaggtttaaa agatgaagac ttaaaaacac tttgtaatca ttttgatgtg gaggagaaaa
     1141 aggctattga tttagttttt aacctcgctc gtggcaactt tagaaaaagt gagaagcttt
     1201 taaaaagagc ttgtgaattt gcagatggaa aagcggttga gcttaaacac atagaagctg
     1261 ccgcatcatt tttaatgctg ggctaaa
//
LOCUS       DARGBD010000164         1269 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.164, whole genome shotgun sequence.
ACCESSION   DARGBD010000164 DARGBD010000000
VERSION     DARGBD010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.164"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..448)
                     /locus_tag="SFZ04_001799"
     CDS             complement(<1..448)
                     /locus_tag="SFZ04_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG8066028.1"
                     /translation="MEIGKKIRIAREEQGYSQEQLANELGITARTLQNYEYGRSDVGV
                     ILVGRIAKILKINSDYFFKDDSSLVVRKSTDKNVRKSFVSDEKMFVSKTNLKNVSKLP
                     LNMSPSNVSKSTNFVSYSSPNTNLESQTLNDDMINIPFFENVRASAG"
     gene            547..816
                     /locus_tag="SFZ04_001800"
     CDS             547..816
                     /locus_tag="SFZ04_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066029.1"
                     /translation="MNFKQASNLLNGVKHLFESENFNGKDELIKLSLEKLEGFLANQK
                     SKEIAENVSKCFLKHDTGKKTYKSALKSHTFKGYKGRQIKERVEL"
     gene            832..1023
                     /locus_tag="SFZ04_001801"
     CDS             832..1023
                     /locus_tag="SFZ04_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066030.1"
                     /translation="MKNKLVKTMSAKGVKLMTWAKAKGLNHKDITILYDLSHGRIKGI
                     RGRAKELKEMLEKDGFKVA"
     gene            1024..>1269
                     /locus_tag="SFZ04_001802"
     CDS             1024..>1269
                     /locus_tag="SFZ04_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8066031.1"
                     /translation="MWVNANIFCDNNSIGLRNLQKKSKRAIENNEKILHIDKKIFSYR
                     YTQGKGHGGKTLQIWSKPLSKEEAKLVEQGFNIEDISN"
BASE COUNT          485 a          163 c          216 g          405 t
ORIGIN      
        1 ttccagcact tgctcttaca ttttcaaaaa aaggaatgtt tatcatatca tcgtttaagg
       61 tttgagattc caaatttgta ttaggagacg agtaggagac aaaatttgtc gacttggaga
      121 cattactagg agacatattg agaggcaact tggagacatt tttaaggttt gttttactaa
      181 cgaacatttt ttcatcactt acgaacgact tacgaacatt tttatctgtt gacttacgaa
      241 cgactaacga actatcatct ttaaaaaaat agtcactatt tattttaaga atcttagcta
      301 ttctaccaac taaaataaca ccaacatcac ttctaccata ttcataattt tgtaaagttc
      361 tagctgtaat acccaattcg ttagctaatt gctcttgaga atatccttgt tcttctcttg
      421 ctatgcgaat tttttttcct atttccataa attatccttg acaatacgaa attattttcg
      481 tataattaca taactttttt ggtaatggta acacaaaaaa gcaaaaataa aattaaaagg
      541 cgtaaaatga attttaagca agcaagcaat cttttaaatg gtgtaaaaca tttatttgag
      601 agtgaaaatt ttaatggtaa agatgagctt attaagcttt ctcttgagaa gctagaggga
      661 tttttggcaa atcaaaaaag taaagaaatt gctgaaaatg ttagtaaatg tttcctgaaa
      721 cacgatactg ggaaaaaaac ttataagagt gctttaaaat ctcatacttt taaaggatat
      781 aaaggtcgtc aaattaaaga aagagttgaa ttataatcaa aaggatttta gatgaaaaat
      841 aaacttgtaa aaactatgag tgctaaaggt gtaaagctta tgacttgggc taaggctaag
      901 ggcttaaatc ataaagatat aactatactt tatgatttgt ctcatggtag gattaagggt
      961 ataaggggta gagctaaaga attaaaagaa atgctagaaa aagatgggtt taaggtggct
     1021 taaatgtggg taaatgctaa tattttttgt gataataatt ctattggttt aaggaattta
     1081 caaaaaaaat caaaaagagc tattgaaaat aatgaaaaaa ttttgcacat tgataagaaa
     1141 atattttcgt atagatacac ccaaggcaaa ggacacggtg gtaaaaccct tcaaatctgg
     1201 tctaaacctt taagcaagga agaagcaaag ctagtagagc aaggttttaa catagaagat
     1261 ataagcaat
//
LOCUS       DARGBD010000165         1266 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.165, whole genome shotgun sequence.
ACCESSION   DARGBD010000165 DARGBD010000000
VERSION     DARGBD010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.165"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..264)
                     /locus_tag="SFZ04_001803"
     CDS             complement(<1..264)
                     /locus_tag="SFZ04_001803"
                     /inference="COORDINATES: protein motif:HMM:NF027409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066032.1"
                     /translation="MKLEDIFVYMVLMIVSFIAGLVGIVTKNKLSKALNLKGKFTLFL
                     KGMLGSMFVAYLVFEIVNYLNFGIKLSVAVGGFAAYMGTDALLK"
     gene            complement(376..624)
                     /locus_tag="SFZ04_001804"
     CDS             complement(376..624)
                     /locus_tag="SFZ04_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066033.1"
                     /translation="MNDKMRIFLLIIPFVFLSACASKDILIKTEIKEVKVPIKCPLKL
                     PLKPLDKKDLESAKEISKYYLEVENIAKLCTGEKDERK"
     gene            complement(621..962)
                     /locus_tag="SFZ04_001805"
     CDS             complement(621..962)
                     /locus_tag="SFZ04_001805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066034.1"
                     /translation="MFSFILSRFLSPSKIAFFVLIALCGFLYLKNNALALENENLKLK
                     ALHFNNEINVFKDKLAQQNKAIDKLKLDLKPKETLKEVLKVDKVFIKDKSCESELKAY
                     KELFNILGAKK"
     gene            complement(973..>1266)
                     /locus_tag="SFZ04_001806"
     CDS             complement(973..>1266)
                     /locus_tag="SFZ04_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF882 domain-containing protein"
                     /protein_id="HEG8066035.1"
                     /translation="ILCEIREHYNAPVIINSGYRCKEHNAEVGGAPKSQHAIGSAADF
                     VVKGVKTEEVHQYVLITYGERGLGIAIKHNFNDPYAGFVHLDTRGKKARWTYP"
BASE COUNT          434 a          216 c          145 g          471 t
ORIGIN      
        1 tttaagcaat gcatctgtcc ccatataagc tgcaaaacca cccactgcaa cgctaagctt
       61 tatgccaaaa ttaagataat ttacaatttc aaaaactaga tatgctacaa acatagaacc
      121 tagcatacct tttaaaaaga gtgtaaattt accttttaaa ttaagagctt tgcttaattt
      181 attttttgtt acaattccta caagtccagc tataaagctt actatcatta aaaccatata
      241 tacaaatata tcttctaatt tcattgctag ttccttgtaa aaatttcaaa taaatataat
      301 aaagctaatg caaaagttga aaacaaaaga gctataagaa gatcttttgc aatgcttttt
      361 tgatttatca ttttattatt ttctttcatc tttctctcct gtgcaaagct tggctatatt
      421 ttcaacttct aagtaatatt tagagatttc tttagcactt tctaagtctt ttttgtctaa
      481 aggctttaaa ggaagtttta aagggcattt aataggaact ttaacttctt tgatttcggt
      541 tttaatcaaa atatctttag aagcacaagc gcttaaaaaa acaaaaggta taattaatag
      601 gaaaattctc attttatcat tcactttttt gctcctaaaa tattaaataa ttctttataa
      661 gctttaagtt cactctcaca gcttttatct ttaataaaaa ccttatccac ttttaaaact
      721 tcttttaaag tctctttggg ctttaaatca agttttaatt tatcaatagc tttattttgc
      781 tgggctaatt tatctttaaa aacattgatt tcattgttaa aatgtaaagc tttaagtttt
      841 agattttcat tttctaaagc taaagcattg ttttttaaat ataaaaaacc acaaagagca
      901 attagaacaa aaaaagctat ttttgaagga cttaaaaacc ttgataaaat aaaactaaac
      961 acaatctttt ccttatggat aagtccatct tgcttttttg cctctagtgt ctaaatgtac
     1021 aaacccagca taaggatcat taaaattatg ctttatagca atccctaaac ctctttcgcc
     1081 ataggtgatt aaaacatatt gatgaacttc ttctgtttta actcctttaa ccacaaagtc
     1141 tgctgcactt cctatagcgt gttggctttt aggggctcca ccaacctctg cattatgctc
     1201 tttgcagcga tatccactat ttataataac aggagcattg taatgttctc tgatttcaca
     1261 aagaat
//
LOCUS       DARGBD010000166         1250 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.166, whole genome shotgun sequence.
ACCESSION   DARGBD010000166 DARGBD010000000
VERSION     DARGBD010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.166"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            220..>1250
                     /locus_tag="SFZ04_001807"
     CDS             220..>1250
                     /locus_tag="SFZ04_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066036.1"
                     /translation="MSISLFNDEIKAYIKNYYSIVDFLYLRYGLEFDKAGNERHNKSL
                     KIKTNTCLITDFNGSFSGDIIDFIAFKENVELKEALIIFSDFNRLPTQKVGSFKPQKE
                     PLKDNSYLKNIAYSLQANFNLANSDFIECKALEKAFFNDFRLFMHLCKLNFLKDDEFE
                     SILKDYFAFSKDDKSLAFILKDKNEIKSVAIREKLFKNELVKWFKVKGSSNKFIKLIK
                     AKEKGLLKDYCFIFSGIKEIIVSELLGLNAVCFQSDSMMKNIHSHEQINELLNLIDNK
                     RIVFIVENDESSFKANLELLKELIQINPLEKGYCVFNYDEVKNADFIDFLAYLMKELR
                     QDYQRDKKG"
BASE COUNT          515 a          117 c          196 g          422 t
ORIGIN      
        1 tttgaaattt ttaatttact tgagaaaaaa atacaaattt tgcaaaaatt accagacttt
       61 gaaagagaaa taaaagagct tttagtaatt ttagaaagta ataaaaaact ttttcttaaa
      121 aagaatactt tcattaaaaa agaacaaaaa aggcaaattc ttttataaat gcttgtaagg
      181 caacttatga agctttaaaa cacaaattaa aggcttaaaa tgagcataag cctttttaat
      241 gatgaaataa aggcgtatat aaaaaattat tattctatag ttgatttttt atatttacgc
      301 tatggtttgg agtttgacaa agcaggaaat gaaagacaca ataaaagcct taaaataaaa
      361 actaacactt gcttgattac tgattttaat ggaagtttta gtggggatat aatcgatttt
      421 atagccttta aagaaaatgt agagttaaaa gaagctttga ttatatttag tgattttaac
      481 aggttaccca cgcaaaaggt gggtagcttt aaaccacaaa aagagccttt aaaagataat
      541 agctatttaa aaaatatagc ttattcttta caggctaatt ttaatttagc taatagcgat
      601 tttatagaat gtaaggcttt agaaaaagct ttttttaatg attttagact ttttatgcac
      661 ttatgtaaat taaatttttt aaaagatgat gagtttgaaa gtattttaaa agactatttt
      721 gctttttcaa aagatgataa aagtttggct tttatcttga aagataaaaa cgaaattaaa
      781 agcgtggcta ttagagaaaa gctttttaaa aatgaattag tcaaatggtt taaagttaaa
      841 ggtagtagca ataaatttat aaaacttata aaagccaaag aaaaaggctt attaaaagat
      901 tattgtttta tctttagtgg catcaaagaa attatagtaa gtgaattgct aggattaaac
      961 gctgtttgtt ttcaaagtga tagcatgatg aaaaatatac actcacacga gcaaataaat
     1021 gagcttttaa acctcatcga taataaaaga atagttttta tagttgaaaa cgatgagagc
     1081 agttttaaag ctaatttaga gcttttaaaa gaattaatac aaataaatcc tttggaaaaa
     1141 ggctattgtg tttttaatta tgatgaggta aaaaacgctg attttataga ttttttagct
     1201 tatttaatga aagagttaag acaagactac caaagagata aaaaaggctt
//
LOCUS       DARGBD010000167         1210 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.167, whole genome shotgun sequence.
ACCESSION   DARGBD010000167 DARGBD010000000
VERSION     DARGBD010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.167"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..327
                     /locus_tag="SFZ04_001808"
     CDS             <1..327
                     /locus_tag="SFZ04_001808"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066037.1"
                     /translation="FDYIGENGKIILNIKQRAMEIKNTLNGGYNSVSIKTKDKLTRYD
                     LDGKPHYEKTSKKIIDTPHKIEYTKHINPQDPTKYRMSQGLVEPISHKDLDIVENYLK
                     RQNNEI"
     gene            317..703
                     /locus_tag="SFZ04_001809"
     CDS             317..703
                     /locus_tag="SFZ04_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066038.1"
                     /translation="MKFENLKHGSLFKREFYLKDVKIDLKNDFFVYSIITNEKTLEIF
                     FKSEKKDIQDLQIIFYDYKLLHSKSYCKNFNQLEASFIDLIRNNWDDITGYIEKEEEM
                     LISIYFDNDLEYITLTCKYFNIDFID"
     gene            718..>1210
                     /locus_tag="SFZ04_001810"
     CDS             718..>1210
                     /locus_tag="SFZ04_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066039.1"
                     /translation="MTREQAELIIEEEKLIDTDWYPSYKHSGEYHLTMWFDSDNNKYE
                     AVYIGERGGVELEYSFDSEKEAIDKMLQMNYEQKKYNGKDIKEYLTKEVALRIIKEEN
                     LEVIWYDEALKPLCAGIKHDKQRDKYISFITNAKAKLIEYRSIEFDGDRYSETFKEML
                     NDEF"
BASE COUNT          528 a          111 c          198 g          373 t
ORIGIN      
        1 tttgattata ttggtgaaaa tgggaagatt attttaaaca ttaaacaaag agccatggaa
       61 ataaaaaata ctttaaatgg aggatataat agtgtttcca taaagacaaa agataaactc
      121 accagatatg atttagatgg taaaccacat tatgagaaga catcaaagaa aataattgat
      181 acacctcata aaatagaata tactaaacat ataaatcctc aagatccaac aaagtataga
      241 atgtcacagg gtttagtaga gccgatatct cataaagatt tagatattgt agaaaattat
      301 ttaaaaaggc aaaataatga aatttgagaa tttaaagcat ggaagtttat ttaaaagaga
      361 attttatctt aaagatgtaa aaatagattt gaaaaatgac ttttttgttt attctatcat
      421 aacaaatgaa aaaactttag aaatattttt taaatcagag aaaaaagata tacaagattt
      481 gcaaattatt ttttatgatt ataagttgct acactcaaaa tcatattgta aaaattttaa
      541 tcaattagaa gctagtttta ttgatttgat aagaaataat tgggatgata taacaggcta
      601 tattgaaaaa gaagaagaga tgttgataag catatatttt gataatgatt tagaatatat
      661 tactttaact tgtaagtatt ttaatataga ttttatagac taaacaaagg ataaaaaatg
      721 acaagagaac aagcagaatt aattatagaa gaagaaaagt tgattgatac agattggtat
      781 ccttcttata aacattcagg agaataccat cttactatgt ggtttgattc tgataataat
      841 aaatacgaag ctgtttatat tggagaaagg ggcggtgttg aacttgagta ttcttttgat
      901 agtgaaaaag aagctattga taaaatgttg cagatgaatt atgaacaaaa aaaatacaat
      961 ggaaaagaca ttaaagaata tctaacaaaa gaagtagcac taagaatcat caaagaagaa
     1021 aatctagagg tgatttggta tgatgaagca cttaaacctt tatgtgcagg tattaaacac
     1081 gataaacaaa gagataaata tatatctttt atcactaatg ctaaagcaaa gcttatagaa
     1141 tatagaagta ttgaatttga tggggataga tacagtgaaa cctttaagga aatgcttaac
     1201 gatgaatttc
//
LOCUS       DARGBD010000168         1187 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.168, whole genome shotgun sequence.
ACCESSION   DARGBD010000168 DARGBD010000000
VERSION     DARGBD010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.168"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(23..1099)
                     /locus_tag="SFZ04_001811"
     CDS             complement(23..1099)
                     /locus_tag="SFZ04_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8066040.1"
                     /translation="MAKISILTPCFNHEKYVSYFLQSVLEQSFSDFELIIVDDCSSDN
                     STKEIQKFKDPKIKLIKHEFNKGINATLNTAFENSNGEYIVFCASDDILEKNALEIIY
                     KTFKDNDIIAVYPNLICIDENNEILGNLYPLKQRNKVELLYYLFMRYNCLTSVGLSLK
                     RDVFEKLYPLPNSMCNYQDMKMHIDILNIGEIKILETQLIRYRRTRDKTNISAHNSIT
                     TTRENLETEMLLDTYLKFDNIFLLEQIFHKEVNKTNIKPYQETLPFFLGIMALESDNI
                     YKKYWGYHKIMEFYKNDANAKILYEKYNFTFKDYLQLAKKCDTGDIFIKKYRKYKKMF
                     NYTALLLGIIVFILIFNFIIMEIK"
BASE COUNT          400 a          149 c          117 g          521 t
ORIGIN      
        1 tgttttaagt ctaaaaattt tatcatttga tttccattat tataaaatta aaaattaaaa
       61 taaatacaat tatacctaat aataaagctg tataattaaa cattttttta tattttctat
      121 atttttttat aaaaatatcc cctgtatcgc atttttttgc taattgtaga tagtctttaa
      181 atgtaaaatt atatttttca tataaaattt tagcattggc atcattttta taaaattcca
      241 ttattttatg ataaccccaa tattttttat atatgttgtc agattctaaa gccattattc
      301 ctaaaaaaaa aggcaatgtc tcttgataag gttttatatt tgttttattt acttctttat
      361 gaaaaatttg ctctaataaa aatatattat caaattttaa gtaagtatct aagagcattt
      421 ctgtttctag gttttctcga gttgttgtga tgctattatg agcacttata tttgttttgt
      481 ctctagttct tctgtatctt ataagttgtg tttcaagtat tttaatttcg ccaatattta
      541 atatatcaat atgcatcttc atatcttgat agttgcacat tgaatttggt aaaggatata
      601 atttttcaaa aacatctctt tttaaagata atccaactga tgttaagcag ttgtatcgca
      661 taaataaata atataataat tctaccttat ttctttgttt taatggatat aagttcccta
      721 aaatttcatt attttcatct atacaaatca aatttggata tacagctata atatcattat
      781 ctttaaatgt tttatagata atttctaaag catttttttc taatatatca tcactcgcgc
      841 aaaatactat gtattctcca tttgagtttt cgaaagctgt atttaatgtc gcatttatac
      901 ctttgttaaa ttcatgtttt ataagtttta tttttggatc tttaaatttt tgaatttctt
      961 ttgtgctatt atcacttgaa caatcatcta ctataatgag ctcaaaatca ctaaaacttt
     1021 gctctaaaac actttgtaaa aaataactca catatttttc atgattaaaa catggggtta
     1081 gaatggaaat ttttgccatt actttatcct tgtaatatta taacttattt aatttttgag
     1141 cgataatttt aaatccatca atacctgaaa ttataaaata gttttca
//
LOCUS       DARGBD010000169         1151 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.169, whole genome shotgun sequence.
ACCESSION   DARGBD010000169 DARGBD010000000
VERSION     DARGBD010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.169"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..362
                     /locus_tag="SFZ04_001812"
     CDS             <1..362
                     /locus_tag="SFZ04_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HEG8066041.1"
                     /translation="FKNLSKLGLKLVNLHLLKNDELDFNVGEALFKDIKNKNFKIQKI
                     KYNKDVKELFINESLYFNKVSPEIYEFKIGGYAVLDKYLKSHKEEDIDHKHFTLIIQT
                     LDETLKIQDEISKINLS"
     gene            complement(368..1081)
                     /locus_tag="SFZ04_001813"
     CDS             complement(368..1081)
                     /locus_tag="SFZ04_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG8066042.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYKAFLNLASKKVYLGWASRRKSSFLDPIFEHFNTHFKG
                     FYESDLQGFLNTQNIPYEYEIFNETRVVKRDKQSAIENALWHLSMNGINTNKQELESF
                     VKDEVEEIIEAKIKLLIIS"
BASE COUNT          420 a          169 c          139 g          423 t
ORIGIN      
        1 cttttaaaaa tttaagcaaa ctaggcttaa aacttgtaaa tttacattta ttaaaaaatg
       61 atgagttaga ttttaatgta ggtgaagcct tgtttaaaga cattaaaaat aaaaatttca
      121 aaatacaaaa aatcaaatac aacaaagacg taaaagaact tttcataaac gaaagtttgt
      181 attttaataa agtaagtcct gaaatttatg agtttaaaat aggcggctat gctgtgctag
      241 ataaatacct aaaaagccac aaagaagaag acatagatca taagcatttt accttgatca
      301 tacaaacttt agatgaaact ttaaaaattc aagatgaaat ttcaaaaatc aatcttagct
      361 agtataacta gctaatgatt aaaagtttta tcttagcttc tataatctct tctacttcat
      421 cttttacaaa gctttctaac tcttgtttgt ttgtattaat accattcata cttaaatgcc
      481 acaaagcatt ttctatcgca ctttgtttgt ctctttttac cactctagtt tcgttaaaaa
      541 tttcatactc ataagggata ttttgtgtat ttaaaaaacc ttgcaaatca ctttcataaa
      601 aacctttaaa atgagtgtta aaatgctcaa atataggatc taaaaagcta cttttacgcc
      661 tacttgccca gcctaaatac acttttttag aagctaagtt taaaaaagct ttatagtctt
      721 tttcattttg taaagcagga gacatactta aaaatgcaag atcaaattta acattaggat
      781 tgttttgcat ccaagtttca aagctcaaat tttcgcattt tatattgtta agatttagtt
      841 ttttagcatc ttcttgtaaa atttcaagca tagtatttgc actatctagg gctaaaattt
      901 ctttagcttc tttagctaag tgtaaagtcc aaaccccagt tccacatcct atatctataa
      961 tgcttttatt ttgaaaagaa atatttaaat tttgtaaata ttcaaaagtt tgcttttgta
     1021 tggtgtttaa agtgttttga tatcttgcgt aagttttggc ctttttatcc cataaattca
     1081 tatattttcc ttgataaaat atacaaaatc atagcataaa tttttaaaat tcaagcccaa
     1141 agaaagggct t
//
LOCUS       DARGBD010000170         1122 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.170, whole genome shotgun sequence.
ACCESSION   DARGBD010000170 DARGBD010000000
VERSION     DARGBD010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1122)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1122)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.170"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..958
                     /locus_tag="SFZ04_001814"
     CDS             <1..958
                     /locus_tag="SFZ04_001814"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066043.1"
                     /translation="TMPQYNYPRYKREIATNALSYLSVVPAMIDKGLDTLKLQENTDY
                     ELSSINNHYLTLANSTVGVDNTNARARNEITLKNDKDKEEIYILAQKDYKEEIGNNYE
                     QTIKNNKTSEVGALYTEFITLGHMQNIIGFKNVNVGAEYLENTLLSKDTNVGLSNTLN
                     VGISNEVNIGQNHEEKIGNDKRVIINNNLEQDIKNDFIQRIGHNKNETIKGSYVLQTN
                     QSIKFYSKQDLSIETNEYFKAEADDSISFKAKKNCSFTADNVNTMANQESVLTAQKQI
                     VSRVGNTTITQTKDKIILQVGTTQVIIDSKGLRVKGGDLRAD"
     gene            1024..>1122
                     /locus_tag="SFZ04_001815"
     CDS             1024..>1122
                     /locus_tag="SFZ04_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8066044.1"
                     /translation="MKTLEDIKAMSYQEKDELEDLVLEIIDNNDLVK"
BASE COUNT          512 a          146 c          172 g          292 t
ORIGIN      
        1 aacaatgccc caatataatt atccaagata taaaagagaa atcgctacaa atgcattgag
       61 ttatttaagc gtagttcctg ctatgattga taaaggttta gatacattaa aacttcaaga
      121 aaatactgat tatgaattaa gttctataaa caatcattat cttactttgg ctaattccac
      181 agtaggagtg gataacacca atgcaagagc aaggaatgaa attaccctaa aaaacgacaa
      241 agacaaagaa gaaatttata tcctagcaca aaaagattat aaagaagaaa taggtaataa
      301 ttatgagcaa accataaaaa ataataaaac ttcagaagtg ggagccttat ataccgaatt
      361 tattacttta ggacatatgc aaaatatcat aggttttaaa aatgtcaatg taggagctga
      421 atatttagaa aataccctac tttctaaaga tactaatgtg ggcttaagta atactttaaa
      481 tgtaggaatc agcaatgaag tcaatatcgg acaaaaccac gaagaaaaga taggaaacga
      541 caaaagagta ataatcaata acaatctaga gcaagatatc aaaaatgatt ttatccaaag
      601 aataggacat aacaaaaatg aaaccataaa aggttcttat gtgcttcaaa ccaatcaaag
      661 tataaaattt tattccaaac aagatctaag catagaaaca aatgagtatt tcaaagctga
      721 agctgatgat tctattagtt ttaaagccaa gaaaaattgc tcttttacag ctgataatgt
      781 aaatactatg gcaaatcaag aaagtgtttt aacagcacaa aaacaaatcg tttctagggt
      841 aggaaataca actattacac aaacaaaaga taaaattata ctacaagtag gaacaacaca
      901 agtgattata gatagcaaag gtttaagagt aaaaggaggt gatttaagag cggattaaaa
      961 gcaattttct taaaattaaa actaaaatca taaaaaaccc aatttacaaa gaaaggaaaa
     1021 acaatgaaaa ccttagaaga tatcaaagct atgagctatc aagaaaaaga tgaattagaa
     1081 gatttagttc ttgaaattat agataataat gatttagtta ag
//
LOCUS       DARGBD010000171         1072 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.171, whole genome shotgun sequence.
ACCESSION   DARGBD010000171 DARGBD010000000
VERSION     DARGBD010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.171"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
BASE COUNT          480 a          138 c          114 g          340 t
ORIGIN      
        1 aataatatta cacacaaacc ctataaacca acttaatttt ttgtgttttt ctcctgtgct
       61 ataacattta aaaaaataag cttgtaataa acaaggaagt ataataaatg tgattgtaaa
      121 aaaaataaaa tttataaaga ttaaaaattt agaacactta tatactatat attcttgtgg
      181 tgataattct tcagcttctg gaggaccgag cattacatat cctctataag tttcaagatc
      241 atagctaaga taaaatatga taataatagc tgtaaaaaag ataataaaat atattgaaaa
      301 ataagatttt aaaaattctt ttatgttaat tctcatccaa taatttataa tagaaaaggc
      361 aataagaacg cttaaggctg taatataaag tattgtatca atagtaacaa gcctaaaaat
      421 aaatcctacc aaacccaaaa aatagaaaat gtaatatctt ctcccattta aactcctgta
      481 ttataaagca cattataagc ttcatcttta aaatcaagtt tagtgataaa atctttacta
      541 taaagtctaa aatccaaacc ataaggagtg aatttttgat agtctttaaa gattttcata
      601 taccacatac acactcgcaa ttaataaaaa gatattacac acaaacccta taagccaact
      661 taattttttg cgtttttctc ctgtgctata acatttaaat aaataagctt gtaataaaca
      721 aggaaatatg ataaatgtga ttactaaaaa aaacatagtt gcaaaggtta aaaatttaaa
      781 ataattacgc actctatatt cttgcggtga taatttttca atttctggag gatcaagtaa
      841 tacaagcgat ttataaaatt caagatcata gctaagataa aatatgataa caatagccat
      901 aaaaaagata ataaaagata ttaaaaaata agattttaca aattctttta tgttaatttt
      961 aatccaataa tttaaaatag aaaagacaac aagaacactt aaagttgtaa gataaaattt
     1021 tatattagta aaagcaagaa taaatccaaa taaaccccaa aaaatagaaa gt
//
LOCUS       DARGBD010000172         1047 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.172, whole genome shotgun sequence.
ACCESSION   DARGBD010000172 DARGBD010000000
VERSION     DARGBD010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1047)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.172"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(112..360)
                     /locus_tag="SFZ04_001816"
     CDS             complement(112..360)
                     /locus_tag="SFZ04_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEG8066045.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(371..970)
                     /locus_tag="SFZ04_001817"
     CDS             complement(371..970)
                     /locus_tag="SFZ04_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG8066046.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
BASE COUNT          334 a          156 c          128 g          429 t
ORIGIN      
        1 gaatcctaca tccggagcca cttttttaac tccattttta atattcataa atgtatttta
       61 atataaaaaa ttaataagtc tttatcacaa aaaaaattgt gataaagttt tttattttgt
      121 ttgtttaaga tttttgacaa ttttatctat ttttttactt gccttttgat aatccccatc
      181 tttaagttct tctagggcat taacagcaaa agaaaaatct tcaacttcat taagataagc
      241 ctctatggct tcttttacta tggttgattt tggtttagaa agatttttac ttaaattatc
      301 caaacgctcc ttaagctcta aaggcattct aaaagaataa gtttttacat tgcgtttcat
      361 tttatcctcc ttaagaatat tttttgtaaa attttatagc ttgtttacaa gttttacaag
      421 taaatttatg accttgtaat tctatttttt gatgaatgct ataaggaaca tcgtgaattt
      481 taccaggaca attacaggta taaagataaa attgtggatg ctcattatct tcatcttctg
      541 ctgcttcaaa gctaacatcg ccaccatcat ctgtagacaa agaagaactt ctccattttt
      601 caactttcat gtcttcatat agtatgtgtt ctaaaagcca ctttttagcc actatataaa
      661 gtttttcttt aagatcattg gttgatttga tatctttgat taaattaatc atggtttgga
      721 tgatttcttt atgtattttt cgatgttctt ctaaatttgg atagcctatt agctgcatgt
      781 atttttcttc atcattaaag tgatctttca tataattaaa aaattcagcc aaaagttctt
      841 tgacttcatt tttacttaca gatctatctg atacaacttc aacttttgca gcaagtttaa
      901 aaagcttttt atgctgctca tcaattttag cattgtgcac actatagctg ttatcccatt
      961 ttggaagcat tttaactcct taaggaaaaa tttatttgta tgaaaggatt atagataaaa
     1021 ataaattaaa taaaaatgaa attttat
//
LOCUS       DARGBD010000173          976 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.173, whole genome shotgun sequence.
ACCESSION   DARGBD010000173 DARGBD010000000
VERSION     DARGBD010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.173"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>976
                     /locus_tag="SFZ04_001818"
     CDS             <1..>976
                     /locus_tag="SFZ04_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8066047.1"
                     /translation="ALSTIDLSEELKVYKVVLFDCVAKDLEIQIAMIFDQQSILEYLS
                     LYEMFISSHYYLKYYETSILSLNELCIKSASVAIRNADITCFLPLLTHGQFLQNIPSM
                     LESIPFQRILSQRKNKFDNAIVVSAGPSLAKQLPLLKACQDKAVIFCADGALSMLEKE
                     GIVPDYVLNIDFKDCHAMKFFQNKENLKQSIIALECATHPNVARSLNAENCMIVLRNK
                     ALYQRFNLNDFGYIDTGTHVSHFSYALALALGFKNIIMIGQDLAFDEEGNSHSKGFDF
                     GEKFEEEHKKYKLKIPAYAGKGEVLTHITWNDYRIKLEYLFACNSKEA"
BASE COUNT          333 a          126 c          172 g          345 t
ORIGIN      
        1 tggctttaag cacgatagat ttgagtgaag agttgaaagt ttataaggtt gtattatttg
       61 actgtgttgc aaaggattta gaaattcaaa ttgctatgat ttttgatcag caaagtattt
      121 tagagtattt aagtttatat gaaatgttta ttagctcgca ttattatctt aaatactatg
      181 aaacttctat tttatctttg aatgaacttt gtattaaaag tgcaagtgta gcaataagga
      241 atgcagatat tacatgtttt ttacctttgc taacacatgg acagttttta caaaacatcc
      301 cttctatgct tgaaagcatt ccttttcaaa gaatcttaag ccaaagaaaa aacaaatttg
      361 ataatgctat agtagtttct gcaggaccta gtttagctaa acaactccct ttacttaaag
      421 cttgtcaaga taaagcagtg atcttttgtg ctgatggggc tttaagtatg cttgaaaaag
      481 aaggtatagt gcctgattat gttttaaata tcgattttaa agattgtcat gcaatgaaat
      541 tttttcaaaa taaagaaaat ttaaaacaaa gcattatcgc tcttgagtgt gctacgcatc
      601 ctaatgtcgc gcgtagttta aatgctgaaa attgtatgat tgttttaaga aataaagccc
      661 tttatcaacg ctttaacctt aatgactttg gctatataga tacgggtact catgtaagtc
      721 atttttctta tgctttagct ttggctttag gatttaaaaa tattattatg atagggcaag
      781 atttagcctt tgatgaagaa ggaaattcac actcaaaagg ttttgatttt ggggagaaat
      841 ttgaagaaga gcataaaaaa tataaactta aaatccccgc ttatgcaggt aaaggtgaag
      901 ttttaaccca tataacttgg aatgattatc gtataaaact tgaatatctt tttgcttgca
      961 acagtaaaga agctaa
//
LOCUS       DARGBD010000174          968 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.174, whole genome shotgun sequence.
ACCESSION   DARGBD010000174 DARGBD010000000
VERSION     DARGBD010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..968
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.174"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..462
                     /locus_tag="SFZ04_001819"
     CDS             <1..462
                     /locus_tag="SFZ04_001819"
                     /inference="COORDINATES: protein motif:HMM:NF025387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TNT domain-containing protein"
                     /protein_id="HEG8066048.1"
                     /translation="SDNILEDGEIDWPKKYGYKIPPIPKEITLKKGMKLDRYGDNSGS
                     FVCPFKEKKGVMPYEKRSLPYEDNEAMQKTYKRYEVLEDINMESVERKIKMSGDDKLI
                     EKIKELKEKNKFHSPKIGKISPYFEQEGGGTQIKLPISIENLIQLDFIKQI"
     gene            479..>968
                     /locus_tag="SFZ04_001820"
     CDS             479..>968
                     /locus_tag="SFZ04_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066049.1"
                     /translation="MTREQAELIIKEEKLIYITWRDYDNTAGEYHFTIWFNPNNNKYE
                     AVYIGERGGVELSYSFDSEKEAIDKMLQMNYKQKYFSVNEDYSMQNRKEVALRIIQEE
                     NLEVIWYDEALKPLCAGIKHDKQRDKYISFITNAKAEIIEWKSIEFDGDEEFEGKIYN
                     DES"
BASE COUNT          432 a           97 c          176 g          263 t
ORIGIN      
        1 tctgataata ttcttgaaga tggggagatt gattggccta aaaaatatgg ctataaaatc
       61 ccacctatac caaaagaaat cactttaaaa aaagggatga aactggacag atatggagat
      121 aattcaggta gctttgtttg tccttttaaa gagaaaaaag gagtgatgcc ttatgaaaaa
      181 agatcattgc cttatgaaga taatgaagcc atgcaaaaaa cctataaaag atatgaagta
      241 ttagaagata ttaacatgga gagtgttgaa agaaagatta aaatgagtgg ggatgataaa
      301 ttaatagaaa aaattaaaga gttaaaagaa aaaaacaaat tccattctcc aaaaataggt
      361 aaaatatctc catattttga acaagaaggt ggaggaacac agattaaact tcctatttcc
      421 atagaaaact taatacaatt agattttatc aaacaaatat aataataaag gatagaaaat
      481 gacaagagaa caagcagaac taattataaa agaagaaaag ttaatctata taacttggcg
      541 tgattatgat aatacagcag gagaatatca ttttacaatt tggtttaatc ctaacaataa
      601 taaatacgaa gctgtttata ttggagaaag aggaggtgtt gaacttagct attcttttga
      661 tagtgaaaaa gaagccattg ataaaatgtt acagatgaat tataaacaaa aatattttag
      721 tgtaaatgaa gactattcaa tgcaaaatag aaaagaagtg gcactaagaa tcatccaaga
      781 agaaaatcta gaagtgattt ggtatgatga agcacttaaa cctttatgtg caggtattaa
      841 acacgataaa caaagagata aatatatatc ttttatcact aatgctaaag cagagattat
      901 agaatggaaa agtattgagt ttgatggaga tgaagaattt gaaggaaaaa tatataatga
      961 tgaaagta
//
LOCUS       DARGBD010000175          964 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.175, whole genome shotgun sequence.
ACCESSION   DARGBD010000175 DARGBD010000000
VERSION     DARGBD010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.175"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>964
                     /locus_tag="SFZ04_001821"
     CDS             <1..>964
                     /locus_tag="SFZ04_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8066050.1"
                     /translation="ALSTIDLSEELCSGKIYLIDIKEERVDIQLLILFDMKDMFEYLS
                     LYEMFVNNVYYKKFYEDIWHKADELCEKNIKVVIRNLNSSLCIGFECYSHLLQNIPSM
                     LESIPFQRILNERKNKFENAIVVSAGPSLTKQLPLLKAYQEKAVIFCADGALSMLEKE
                     GIVPDYVTNLDFTDLAMKFFQNKENKTSLNVLSCATHLSLVHFLDNKSVVLRDDPLYQ
                     RFNLNDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHSKGFDFGEKF
                     SGEENIDKLKVPAYAGKGEVLTHITWNDYRIKLEYLFACNEQKA"
BASE COUNT          339 a          118 c          167 g          340 t
ORIGIN      
        1 tagctttaag cacgatagat ttgagtgagg aactttgtag tggaaaaatt tatcttatag
       61 atatcaaaga agaaagagtg gatattcaac tacttatact ttttgatatg aaagatatgt
      121 ttgagtatct aagtttatat gaaatgtttg taaataatgt ttattacaaa aagttttatg
      181 aagatatttg gcataaagca gatgagcttt gtgaaaaaaa tattaaagtt gtgataagaa
      241 atttaaattc cagtttatgt atcggttttg agtgttattc tcatctttta caaaacatcc
      301 cttctatgct tgaaagcatt ccttttcaaa gaatcttaaa tgaaagaaaa aacaaattcg
      361 aaaatgctat agtagtttct gcaggacctt ctcttactaa acaacttcct ttacttaaag
      421 cttatcaaga aaaagcagtg atcttttgtg ctgatggggc tttgagtatg cttgaaaaag
      481 aaggcatagt gcctgattat gtgacgaatt tagattttac tgatctagca atgaaatttt
      541 ttcaaaataa agaaaataaa acttctttaa atgtgctttc atgtgctact catcttagct
      601 tggttcattt tttagataat aaaagtgtag ttttaagaga tgacccttta tatcaacgct
      661 tcaatcttaa tgactttggt tatatagata caggcactca tgtgagtcat ttttcttata
      721 ctttagcttt ggctttagga tttaaaaata ttatcatgat aggacaggac ttagcctttg
      781 atgaagaagg aaattcacac tcaaaaggtt ttgattttgg agagaaattt agtggtgaag
      841 aaaatataga taaacttaaa gtccctgcct atgcaggtaa aggtgaagtt ttaactcata
      901 taacctggaa tgattatcgt ataaaacttg aatatctttt tgcttgcaat gaacaaaaag
      961 caaa
//
LOCUS       DARGBD010000176          919 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.176, whole genome shotgun sequence.
ACCESSION   DARGBD010000176 DARGBD010000000
VERSION     DARGBD010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.176"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..906)
                     /locus_tag="SFZ04_001822"
                     /pseudo
     CDS             complement(1..906)
                     /locus_tag="SFZ04_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
BASE COUNT          319 a          168 c          112 g          320 t
ORIGIN      
        1 gctaagaatg cttgcaaaaa caacaatcac agtttgtata aatgcaattt tataaactgg
       61 agcttctatt tgttctattg gctctccaac gcaagcagta taaattccag aaacctttgt
      121 gcatacagca aatctttcat taccatcttt tggtctagta tactcaaaag gttcaagatc
      181 ctctttagtt ttagcaagat ttgcaatagt actaatatca taaccttgtt gcaaaagagt
      241 tttgtctgta gaaacaaata ctttatttta ttcatcaaat acaaaagttc tacctggtaa
      301 attttcaaat tcagcttgca aatctgccgc aagaatatct acagccaaaa cccctataaa
      361 tttaccatct ttataaagcg gaatagaata tgtaaagcaa ggtaaatttg tagttacatc
      421 aatataagat ggggtaatat aaagtttatt tgttttaact gcttctatat aatactctct
      481 tgttctagca tcataattat cagcttttcc ataagttcca aaatctaaat ttttagcatc
      541 agagtctgga tcgcttacaa caagttcgcc atttggttga gcaatataaa ctgctaagaa
      601 tcttccagca tctctaaaat tctttaaatc ttttccaaca taatgcatta aagcatcttg
      661 actatctaac tgttctatag gatgctttaa aatactttta gctaaacttt caagagctaa
      721 agaatttctt gccttaaaag actctataga atttttagcc gttttaacat aatttatttc
      781 agcattcaca acttcatgaa aaattgcttg ctttacaaat ataaatgtta caacacctaa
      841 aattatcaaa cacactactg cgattaaatt tgcaatcagt gaaaccttca attttacact
      901 tttcataatt taagcgctc
//
LOCUS       DARGBD010000177          880 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.177, whole genome shotgun sequence.
ACCESSION   DARGBD010000177 DARGBD010000000
VERSION     DARGBD010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.177"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>880
                     /locus_tag="SFZ04_001823"
     CDS             <1..>880
                     /locus_tag="SFZ04_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066051.1"
                     /translation="KQADISNNTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDE
                     IERRAENNSYTSDIKKYLGIDKYYTNIDMAETIKQYYNQFNQIINHAFNDTNKTSFTE
                     ADINSMPKGISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAEQLGMFGHINIGLQ
                     SLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFMSFLKSTGVSPREG
                     SATLNPIAKSYAEAMTKESFDGSLTSLDDIMTGKVDFASLLKGYAQEGWLDADIYAME
                     KGVAWQNTSIGYGGAWF"
BASE COUNT          346 a          115 c          161 g          258 t
ORIGIN      
        1 aaacaagcag atataagtaa taatacagcc tatggttata gtgtagataa agatggttat
       61 atgggaagtg attttaacaa agctgcagga cttcctgaag attttaagat acataaatct
      121 actttggatg agatagagag gagggctgaa aataactctt atacttcaga tataaaaaaa
      181 tatttaggta tagataaata ttatacaaac atagatatgg ctgaaaccat aaaacaatac
      241 tataatcaat ttaatcaaat tattaatcat gcttttaatg ataccaataa aacaagcttc
      301 actgaagcag atataaattc tatgcctaag ggaattagtg aattatcatc tgataaaact
      361 ataggtatta tgccgaaaaa ttatgataag ctaacaataa caaactatta taatacacaa
      421 gagcaatata atgaagcaga acaattagga atgtttgggc atattaatat aggcttacaa
      481 tcattaaatt tcactccgca aagtatgcaa actcaaaatt tagataaaga cactgcaata
      541 gatactttta atcctgatat gtcagtttat ccacaaaatg aagatggaag ctactctaaa
      601 gaagctttgt ttatgagttt tttaaaatca acgggtgtat cgccaagaga aggtagtgca
      661 acattaaatc ctatagctaa gtcttatgct gaagctatga ctaaagaaag ctttgatgga
      721 tcattaactt ccttagacga catcatgaca ggcaaagtgg attttgcaag tttgttaaaa
      781 ggctatgcac aagagggttg gcttgatgca gatatatatg caatggaaaa aggagttgct
      841 tggcaaaata caagtatagg ttatggtgga gcttggtttg
//
LOCUS       DARGBD010000178          854 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.178, whole genome shotgun sequence.
ACCESSION   DARGBD010000178 DARGBD010000000
VERSION     DARGBD010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..854
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.178"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            45..455
                     /gene="perR"
                     /locus_tag="SFZ04_001824"
     CDS             45..455
                     /gene="perR"
                     /locus_tag="SFZ04_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEG8066052.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCAKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDSCKKCH"
     gene            501..>854
                     /locus_tag="SFZ04_001825"
     CDS             501..>854
                     /locus_tag="SFZ04_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066053.1"
                     /translation="MVYEIQKNFLLSDCTLLENLKKDNIPFRNSKFETFYTQITSNHS
                     VKFQSFCNEFYKITKFNNSILEQNQEEKISKKKFEKARKKIIGKSIKKERFEFKFCSL
                     KSYIDIYEEPKICILK"
BASE COUNT          357 a           89 c          114 g          294 t
ORIGIN      
        1 aattttatta ttatttttac ttaaaaaagt aaggaataaa taaaatggaa ttactacaaa
       61 tgcttaaaaa acatgagtta aaagctactc cgcaaagact atgtgtttta aaaattttaa
      121 aaagacatga gcatcctaat attgatgaat tatatacaga aattaaaaaa gaataccctt
      181 caatctcttt agcgacggtt tataaaaatc ttaatacttt acaagaacaa ggtttagttg
      241 ttgaaatcaa tgttttaaat caaaaaactt gttacgatat ctatgaagaa gaacatattc
      301 atgttgtttg cgccaaatgt ggtggtatag aggatttaag ttttaaagat gctaagcttt
      361 atgaatatca agagcattta gaaaaaaaga taggcaatct cgtcaatcat ctgtctgttt
      421 gtgcttatgt tgatagttgc aaaaagtgtc attaagcaaa ataaggttaa aataacccat
      481 atattttaag ggttatttta atggtttatg aaattcaaaa aaacttttta ctatctgatt
      541 gcactctttt agagaattta aaaaaagata atataccttt tcgaaattct aaatttgaaa
      601 ctttttatac tcaaataact tcaaatcata gtgttaaatt tcaaagtttt tgcaatgaat
      661 tttataaaat tacaaaattt aataattcaa ttttagaaca gaatcaagaa gagaaaattt
      721 ctaaaaaaaa atttgaaaaa gctcgaaaaa agattatagg aaagagtatt aaaaaagaac
      781 gcttcgaatt taaattttgc tctttaaaaa gttatattga tatttatgaa gagcctaaaa
      841 tttgtatttt aaaa
//
LOCUS       DARGBD010000179          830 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.179, whole genome shotgun sequence.
ACCESSION   DARGBD010000179 DARGBD010000000
VERSION     DARGBD010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.179"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(129..638)
                     /locus_tag="SFZ04_001826"
     CDS             complement(129..638)
                     /locus_tag="SFZ04_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEG8066054.1"
                     /translation="MHFTIFHIIVFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVNGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            complement(638..>830)
                     /locus_tag="SFZ04_001827"
     CDS             complement(638..>830)
                     /locus_tag="SFZ04_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEG8066055.1"
                     /translation="KIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQFQRIA
                     FENFNYENNYTIRLVSECF"
BASE COUNT          303 a           88 c          117 g          322 t
ORIGIN      
        1 tctagatttt tacttaaata taaaagtaat aaaaaatttt atttaaataa agctcgttag
       61 catatcaaaa aaaaataaaa ttaatataaa attatttttt atagatgttt taaaactatt
      121 taacaatatc aaatacattt taaggtgtga taaaattcag gattattaaa agttggagga
      181 aaaggaacgc tagctctaaa ttctttatag gtattacccg ggagtgtgtc tatgatttct
      241 atagtataag aaacacttgt attttgcatt ttagcgttac ggatattttt atcattgaaa
      301 atttcacctc ctacttgttg ttggtttaat atgctaagta tcaaatagca ttttttgatt
      361 tcaaatttag taagattttg aacttttcca tttactataa cgctttcatg tcttagatct
      421 cttgtatagg ttagtttgct aagatcggct tgagtggtga attgattgat tgtcagaaaa
      481 atagaatata tcaaaagtgc ggtaaaaata gtagctatgg tataagaaat caaagccatt
      541 tctttttgtt tgacttttag aaagattaaa atacaaatca aggcaaagca aataagtaaa
      601 atgataaaaa ctataatatg aaaaattgta aaatgcatta aaaacactcc gaaactaagc
      661 gtatggtata gttattttca tagttaaaat tttcaaaagc aattctttga aattgggttg
      721 cgtttttctt tagatcttta atttctctac ttttttgtct aaaagggata aatttctttt
      781 tatattcttc tatgatatta tcattaggta ttttatctgc aaaaatttta
//
LOCUS       DARGBD010000180          789 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.180, whole genome shotgun sequence.
ACCESSION   DARGBD010000180 DARGBD010000000
VERSION     DARGBD010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.180"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            72..764
                     /locus_tag="SFZ04_001828"
     CDS             72..764
                     /locus_tag="SFZ04_001828"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066056.1"
                     /translation="MDNAKEALKELFGISEVQAVVIEKLYFKAKTPKDILGFKKYYDL
                     TMLKKQFVGTSYEKLSLVCAFAELDLNLRYKNIESFLEWLFISFSNRFIFQTKKGDFS
                     YSFVLRYYDGNIVYDELGKPVLKHVDCGDNLYFINANKELCDEQRKPLNVGEFYNKLV
                     EYMFKNQDKIIFDNKIEISPVIKTQIPSQTKINKDYEQNYLEYKKNQNKLYNANIDKF
                     TSKLEQILKAKK"
BASE COUNT          324 a           91 c          121 g          253 t
ORIGIN      
        1 aagttagcga acaaatacaa aaataaagat aagcaaaaag ctttagcttc ttggctagaa
       61 gaggagtttt aatggataat gcaaaagagg cactaaaaga gctttttggt attagtgaag
      121 ttcaagcagt ggttatagaa aaactttatt ttaaagccaa aacaccaaaa gatatattag
      181 gctttaaaaa atactatgat ttaaccatgt taaaaaagca atttgttggt acaagctatg
      241 aaaaactttc tcttgtgtgc gcctttgcag agcttgattt aaacttaagg tacaaaaata
      301 tagagtcttt tttagaatgg cttttcattt cattttcaaa tcgttttatt tttcaaacaa
      361 aaaaaggaga tttctcatat tcttttgtac ttagatatta tgatggtaac attgtttatg
      421 atgagttagg aaagcctgtt ttaaagcatg ttgattgtgg agataatctt tattttatta
      481 atgctaataa agagctttgt gatgagcaaa gaaaaccact gaatgtagga gagttttata
      541 ataagctagt tgaatatatg tttaaaaacc aagataaaat tatttttgat aataaaattg
      601 aaataagccc tgttattaaa actcaaattc ctagccaaac taaaataaat aaagattacg
      661 agcaaaacta tttagaatac aaaaagaatc aaaataagct ttataatgca aatattgata
      721 aattcacttc aaaactagag caaattttaa aggctaaaaa atgaatactc aaaacacttt
      781 aaaaaagca
//
LOCUS       DARGBD010000181          741 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.181, whole genome shotgun sequence.
ACCESSION   DARGBD010000181 DARGBD010000000
VERSION     DARGBD010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.181"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>741
                     /locus_tag="SFZ04_001829"
     CDS             <1..>741
                     /locus_tag="SFZ04_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8066057.1"
                     /translation="SKYLSPLAAIQTGLTSFFDFINYKTKNVSTIEVKSNDEFGQISN
                     AINENILATKRGLEQDNQAVKESVQTVSVVEGGNLTARITANPRNPQLIELKNVLNRL
                     LDALQARVGSDMNEIQRVFNSYKSLDFTTEVKDANGAVEVTTNALGQEIIKMLKQSSD
                     FANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSSMQNVSVKTSDVITQS
                     EEIKNVTGIIGDIADQINLLALNAAIEA"
BASE COUNT          285 a          121 c          115 g          220 t
ORIGIN      
        1 tatcaaaata cctctcccca cttgcagcta tccaaacagg tttaacttca ttctttgatt
       61 ttatcaacta taaaacaaaa aatgtttcta ctatagaagt aaaaagcaat gatgaatttg
      121 gacaaatctc aaatgctatc aatgaaaaca ttcttgctac taaaagaggc ttagaacaag
      181 acaatcaagc cgttaaagaa tcagttcaaa ccgtatcagt tgtagaaggt ggtaatttaa
      241 cagcaagaat tactgctaat ccaagaaacc cacaattaat agaattaaaa aatgttctaa
      301 atagacttct tgatgcttta caggctagag taggttctga tatgaatgaa attcaaagag
      361 tatttaatag ttataaatct cttgacttta ctactgaagt aaaagatgcc aatggagctg
      421 tagaggtaac tactaatgca ctaggacaag aaatcattaa aatgctaaaa caaagttcag
      481 actttgctaa tgctttagct aatgaaagtg gaaaattaca aactgctgtt caaagcttaa
      541 ccacttcttc aaattctcaa gctcaatctt tagaagaaac tgcagcagct ttagaagaga
      601 tcacttcttc tatgcaaaat gtttcagtta aaactagtga tgttatcact caatctgaag
      661 agattaaaaa tgttacaggt attataggtg atattgcaga tcaaatcaat cttttagctt
      721 taaatgcagc tattgaagca g
//
LOCUS       DARGBD010000182          730 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.182, whole genome shotgun sequence.
ACCESSION   DARGBD010000182 DARGBD010000000
VERSION     DARGBD010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.182"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            26..>730
                     /locus_tag="SFZ04_001830"
     CDS             26..>730
                     /locus_tag="SFZ04_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8066058.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLS"
BASE COUNT          319 a          111 c           94 g          206 t
ORIGIN      
        1 aagcctggaa atatggtgat atttgatgat taatactcaa ctagcaagtc aaattgccaa
       61 tacgcaaaaa aatgatttaa aagtagataa ctctgcttca aaagataaaa caaatttaaa
      121 agacaatcca aaagaagcac ttgcacaagc tttaaagcaa aatttaggtt taagcaagga
      181 cgctagtagt gaggaaatac tagcaaaatt tgttcaaaat gaaacaggta ccaaattaaa
      241 agaacttgtt aataaacttt tagatcaaat caatgctcaa aaaaatcccg attcccctgt
      301 acttaaacaa ggaaaaaatt taaatttagc tcctaatttt gctaatgaat taaaaatctt
      361 aagtacagaa cttgcaaaaa gtgatacttt tacacaagtt ttagacagat taaatcaaat
      421 tttaaaacct gccagtgaaa taaaaaacaa taacttagct cctttgttta aaaattcagg
      481 cgtattttta gaagctaaat taaaagatgc cctaaacgaa gaattactac ccaaaagttt
      541 tcactctctt ttaagtacaa tcaaaggtct tagtagcgaa aaactaagcg ttcagatagc
      601 ccagcttgca aatacaaatt taagcccaaa agacacttta aaagaattaa aaaatattat
      661 taattctagc aaaaatgaaa ataagcaaat tttaaatcaa agttctttta aagcactttt
      721 aaatttaagt
//
LOCUS       DARGBD010000183          728 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.183, whole genome shotgun sequence.
ACCESSION   DARGBD010000183 DARGBD010000000
VERSION     DARGBD010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.183"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>728
                     /locus_tag="SFZ04_001831"
     CDS             <1..>728
                     /locus_tag="SFZ04_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG8066059.1"
                     /translation="DDLAVLNLKFENLSDEIKNNAREKLKALKQVEKYIEGGLKQKRA
                     LEICGISKIEIFRIRKAYKENGILGLIDTRGLHRKDKTKLSAWMQEYALREYRTFAAG
                     GFNFTELWWQIHKEAATKENYDFIGFDLGEVKPLFSVKTLQNFIKNYYKDKPLEHCII
                     TQGLDKAKSKFLPAQGNQRELYDMKNMCWQIDSSPADIIVRDDETLEPFRPHILSVVD
                     VFSGMGVATLVSKSNSLSLTRLLW"
BASE COUNT          263 a          102 c          143 g          220 t
ORIGIN      
        1 gatgatttgg ctgttttaaa tttaaaattt gaaaatttaa gcgatgagat taaaaacaat
       61 gctagagaaa agcttaaggc tttaaagcaa gtagaaaaat atattgaagg tggtttaaaa
      121 caaaaaagag ctttagagat atgtggtatt tctaaaatag aaatttttag aattcgcaaa
      181 gcatataaag aaaatggcat tctaggtctt atcgacactc gcggacttca tcgcaaagat
      241 aaaaccaagc ttagtgcttg gatgcaagag tatgctttaa gagaatatcg cacctttgca
      301 gcaggtggat ttaatttcac tgagctttgg tggcaaatcc acaaagaagc agccactaaa
      361 gaaaattatg attttatagg ttttgatttg ggagaggtaa aaccgctttt tagtgtaaaa
      421 accttgcaaa actttattaa aaactactac aaagataaac cattagaaca ttgcattatt
      481 actcaaggtt tagataaagc aaaaagtaag tttctacctg cacaaggtaa tcaaagagag
      541 ctttatgaca tgaaaaacat gtgttggcaa atcgatagct ctccagctga tattatagta
      601 agagatgatg aaaccttaga gcctttccgc cctcacatct taagtgtcgt tgatgtcttt
      661 agtggtatgg gtgtggctac tttagtaagt aaatcaaatt ctttaagttt gacgcgtctt
      721 ttatggaa
//
LOCUS       DARGBD010000184          727 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.184, whole genome shotgun sequence.
ACCESSION   DARGBD010000184 DARGBD010000000
VERSION     DARGBD010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.184"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            39..>727
                     /locus_tag="SFZ04_001832"
     CDS             39..>727
                     /locus_tag="SFZ04_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG8066060.1"
                     /translation="MNNIKIKLSVIANSIAIFALSILSIISFYFTKDSLYQSTLYTET
                     ELLKATQISIEDFRSRNISLLNTLEKDILKLPYEALNSQDNIVNNVGAILKYYRNSGN
                     LLAVYIGLDNGENIMSSDLSEKKNTNITINGKANNYNATTREWYKEARNSNQIYITPA
                     YIDAVSNEYCITYSKALYKDGKFIGVLGIDILLTSLQDQIARTPGNTFVFDNKDKIFA
                     ATNEALLDPSV"
BASE COUNT          281 a           97 c          103 g          246 t
ORIGIN      
        1 ttcttttaca aaaattaatt aaatttaaaa ggaaaaatat gaataatatc aaaataaaac
       61 tttctgttat tgcaaattca attgcaattt ttgctttaag tattttgagc atcattagct
      121 tttactttac aaaagattct ttgtatcaaa gtacgcttta tactgaaaca gaacttctta
      181 aagcaacaca aatttctata gaggatttta gatccagaaa tatatctttg cttaatactc
      241 ttgaaaaaga tatattaaaa ttaccctatg aagcactaaa ttctcaagat aacatagtta
      301 ataatgtagg ggccatatta aaatactacc gcaatagtgg aaatttgctt gctgtttata
      361 ttggtttaga taatggtgaa aatatcatga gtagtgatct aagcgagaaa aaaaatacta
      421 atataactat aaatggaaaa gccaacaact ataatgcaac tactagggaa tggtataaag
      481 aagctagaaa tagtaatcaa atctatataa ccccagctta tattgatgct gttagtaatg
      541 aatactgcat tacttactct aaagctcttt ataaggatgg taaatttatt ggtgttttag
      601 gaattgatat tttattaact agtttacaag atcaaatcgc tagaactcca ggcaatacct
      661 ttgtttttga taataaagat aaaatttttg cagccaccaa cgaagcttta ttagatcctt
      721 cggtaga
//
LOCUS       DARGBD010000185          721 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.185, whole genome shotgun sequence.
ACCESSION   DARGBD010000185 DARGBD010000000
VERSION     DARGBD010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.185"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            17..304
                     /locus_tag="SFZ04_001833"
     CDS             17..304
                     /locus_tag="SFZ04_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066061.1"
                     /translation="MSKVIVDIKKGFSKTFINAICNHNNELVLEYLKNGMSATKECMG
                     EEPMFYAITHNNFGAILLLLKYGAILDKEYLEESNKDFSKEALKFLSSLLK"
     gene            complement(332..>721)
                     /locus_tag="SFZ04_001834"
     CDS             complement(332..>721)
                     /locus_tag="SFZ04_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEG8066062.1"
                     /translation="MSKQRAPKRLCRDFSLHTKRLKNASIENKSFEYILKEYDYNEAL
                     FYLDPPYVGTENYYKNTGGFGLKEHELLCNLLKNIKGKFMLSYNDCELIRELYKDFNI
                     KELKVRYSLNNNVLKRKESKELLIMNF"
BASE COUNT          265 a          100 c           87 g          269 t
ORIGIN      
        1 aacaaaagga gataagatga gtaaagtaat agtagatatc aaaaaaggtt ttagcaagac
       61 ttttataaac gcaatttgca accataacaa tgaacttgtt ttagaatatc ttaaaaatgg
      121 tatgagtgca actaaagaat gcatgggcga agaacctatg ttttatgcaa taactcataa
      181 taattttgga gcgattttgc ttttattaaa atacggtgct attttagata aagagtatct
      241 agaagaaagc aataaagatt ttagcaaaga agctctaaag tttttaagct ctttactaaa
      301 ataaaagaga gtatttttac tctcttagct tttaaaaatt cataatcaaa agctctttac
      361 tttcttttct ttttaaaaca ttattattta aagaatacct tacttttaat tccttaatat
      421 taaaatcttt ataaagctct cttataagct cacaatcatt ataagaaagc ataaatttac
      481 ccttgatatt tttaagcaaa ttacataaaa gttcatgttc ttttagccca aaacctcctg
      541 tgtttttata ataattctca gttcctacat aaggtggatc taaataaaat aaagcttcat
      601 tgtaatcata ttcttttaaa atatattcaa agcttttatt ttcaatactg gcatttttaa
      661 gtctttttgt atgtaagcta aaatccctac ataatctctt tggtgctctt tgtttactca
      721 t
//
LOCUS       DARGBD010000186          699 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.186, whole genome shotgun sequence.
ACCESSION   DARGBD010000186 DARGBD010000000
VERSION     DARGBD010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.186"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>699)
                     /locus_tag="SFZ04_001835"
     CDS             complement(<1..>699)
                     /locus_tag="SFZ04_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8066063.1"
                     /translation="ALVSAINSVKDTTGVEASIDENGKLLLTSREGRGIKIEGNIGRG
                     AFINPNMLENYGRLSLVKNDGKDILISGTNLSAIGFGTGNMISQASVSLRESKGQIDA
                     NVADAMGFNSANKGNILGGYSSVSAYMSSTGSGFSSGSGFSVGSGKNYSTGFANTIAI
                     SAASQLSAVYNVSAGSGFSSGSNLSQFATMKTSAGNTLGVKDETAGVTTLKGAMAVMD
                     IAETAITNLDQIRAD"
BASE COUNT          225 a          154 c          106 g          214 t
ORIGIN      
        1 gtcggctctg atttgatcaa gatttgttat agccgtttca gctatatcca tcacagccat
       61 agcgccttta agtgtagtta cacctgctgt ttcatctttt acaccaagag tattccctgc
      121 tgaagttttc atggttgcaa actgagaaag atttgatccc gatgaaaaac ctgaacctgc
      181 agaaacatta tataccgcag aaagttgcga agcagctgaa atagctatag tgtttgcaaa
      241 acctgtagaa taatttttac cgctacctac agaaaaacct gaacctgaag aaaatccact
      301 tcctgtacta ctcatatagg cactaacaga agaataacct cctaaaatat ttcctttatt
      361 tgcggaatta aagcccatag catcagctac atttgcatcg atttgccctt tagactctct
      421 taaagaaacg gaagcttgag aaatcatatt gcctgttcca aaacctatag cagaaagatt
      481 tgttccactg attaaaatat ctttaccatc atttttaact aaagataaac gaccataatt
      541 ttccagcata tttggattga taaaagcacc tctgcctata ttaccttcaa ttttaatccc
      601 tcttccctct cttgaagtaa gtaaaagctt accattttca tcgatagaag cttcaactcc
      661 ggttgtatct ttaaccgaat tgattgcaga aaccaaggc
//
LOCUS       DARGBD010000187          698 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.187, whole genome shotgun sequence.
ACCESSION   DARGBD010000187 DARGBD010000000
VERSION     DARGBD010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.187"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            19..>698
                     /gene="ung"
                     /locus_tag="SFZ04_001836"
     CDS             19..>698
                     /gene="ung"
                     /locus_tag="SFZ04_001836"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEG8066064.1"
                     /translation="MEEITINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQN
                     IVIYPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNI
                     FKELQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHK
                     LSNEKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFL
                     KKVGKIPI"
BASE COUNT          278 a           92 c          110 g          218 t
ORIGIN      
        1 taaataatta gggataatat ggaagaaatt acaataaaca tagataagat taaaataaat
       61 gatgactgga aagaattttt aagagacgaa tttcaaaaaa aatattttct agaaatcaaa
      121 aaacaatacc taaatgcgat taatcaaaat atagttattt atccgcctgc aaatttaatc
      181 tttaatgctt ttaatttatg tcctttaaaa gaaattaaaa ttattatcct aggacaagat
      241 ccttatcatc aaccaaatca agcaatgggg cttagttttt cggttccaaa aaatgtaaaa
      301 atcccaccaa gtcttaataa tatttttaaa gaattgcaaa atgatttaaa catcactcca
      361 gcaaaaagcg gagatttaag ctcttgggca aaacaaggag ttttgctctt aaattctatt
      421 cttagcgttg aagcaaataa agcagctagc catagttcgt ggggttggca agaatttagt
      481 gatgctataa tacataaatt aagtaatgaa aaatcagggc ttgtttttat gctttgggga
      541 aattacgcaa aaaacaagga gattttgatt gataatacta agcatttgat tttaaaagca
      601 gctcacccaa gccctttagc tagaacagga tttttaggtt gtaagcattt ttcaaaggct
      661 aatgaatttt taaaaaaagt tggtaaaatt cctataga
//
LOCUS       DARGBD010000188          682 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.188, whole genome shotgun sequence.
ACCESSION   DARGBD010000188 DARGBD010000000
VERSION     DARGBD010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.188"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..405
                     /locus_tag="SFZ04_001837"
     CDS             <1..405
                     /locus_tag="SFZ04_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066065.1"
                     /translation="YKQNKEIQNKNFIIQEEISKLKQDKQKLLTNIQDLNFTLSNKIS
                     STQQQFHILSTITKEINLDKNKAIILNQIISWLNSNELKITNLEFEQTKIILSFIDEN
                     HFKRALENLNSTFKFLDKNEETLNIILEVIHE"
     gene            398..>682
                     /locus_tag="SFZ04_001838"
     CDS             398..>682
                     /locus_tag="SFZ04_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066066.1"
                     /translation="MNKIEVFLQNLNSREKFLFISFICLCALFLAFKIHDRFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIETKLTKQIKTEEEKLKYYKEKLHLFSY"
BASE COUNT          312 a           93 c           61 g          216 t
ORIGIN      
        1 tacaaacaaa ataaggaaat tcaaaataaa aattttatca tacaagaaga aatttctaaa
       61 ctaaaacaag ataagcaaaa attattaaca aacatacaag atttaaactt tactctttcc
      121 aataaaatat catctacaca acaacaattt catattttat ccaccataac aaaagaaatc
      181 aatttagata aaaataaggc aatcattcta aatcaaatca tatcatggct taattccaat
      241 gaacttaaaa tcacaaatct tgaatttgaa caaacaaaaa tcattctttc ttttatcgat
      301 gaaaaccact ttaaaagagc attagaaaat ctaaattcta cttttaaatt ccttgataaa
      361 aatgaagaaa cattgaatat catattagaa gtcatacatg aataaaatag aagtattttt
      421 gcaaaattta aattctaggg aaaaatttct ttttatttct tttatctgcc tttgtgcttt
      481 gtttttagct tttaaaattc acgatcgctt tttggaagat atttttcaaa aaacattagt
      541 agaacataat taccttgcat taaatgaagc aaaaatagaa aattcacatc ttaaagaaat
      601 agagacaaag ctaacaaaac agataaaaac agaggaagaa aaattaaaat actataaaga
      661 aaaattgcat ttattttctt at
//
LOCUS       DARGBD010000189          673 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.189, whole genome shotgun sequence.
ACCESSION   DARGBD010000189 DARGBD010000000
VERSION     DARGBD010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.189"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            108..428
                     /locus_tag="SFZ04_001839"
     CDS             108..428
                     /locus_tag="SFZ04_001839"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066067.1"
                     /translation="MKDIKNYTDKELKEKIIQDLESEFRILYKKLLKEKDYLARDNIL
                     ELMTIYNMGINSYSIAKRFEMNEDKSLIQVPLFERYIIGRKFVVKYNDEKQRYELKST
                     FCEF"
     gene            438..632
                     /locus_tag="SFZ04_001840"
     CDS             438..632
                     /locus_tag="SFZ04_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066068.1"
                     /translation="MKYPNVYVKLVGEDGNVFSILARVSKALKKAGVSKEEISKFQKE
                     AMSSDYNHLLNVVQDWVNTN"
BASE COUNT          294 a           68 c          120 g          191 t
ORIGIN      
        1 gtaattggag aactttctaa gatgtaacag tacacaataa gctaagtcaa gctaatctca
       61 cagagagtgt aaaacacaag gttgttctat caaaaaagga gataaacatg aaagatatca
      121 aaaattacac cgataaagaa ttaaaagaaa aaatcataca agatttagag agtgaattta
      181 ggattttgta caaaaagctt ttaaaagaaa aagattatct tgctagagat aatatattag
      241 agcttatgac tatttataat atgggcataa actcttattc aatcgctaaa agatttgaga
      301 tgaatgaaga taaaagtctt atacaagttc ctttgtttga aagatatatt ataggtagaa
      361 aatttgtagt taaatataat gatgaaaaac aaagatacga attaaaaagt accttttgtg
      421 aattttaagg agaaaagatg aaatacccta atgtttatgt gaaattagta ggagaagatg
      481 gcaatgtttt tagtatttta gcaagagtaa gcaaggcttt aaaaaaagca ggtgtaagca
      541 aagaagaaat aagtaaattt caaaaagaag ccatgagtag tgattataat catttattaa
      601 atgtggtgca agattgggtt aatacaaatt gatttcaaaa agatgtcaaa caacagcaca
      661 cattcagcca agc
//
LOCUS       DARGBD010000190          668 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.190, whole genome shotgun sequence.
ACCESSION   DARGBD010000190 DARGBD010000000
VERSION     DARGBD010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.190"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            14..193
                     /locus_tag="SFZ04_001841"
     CDS             14..193
                     /locus_tag="SFZ04_001841"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066069.1"
                     /translation="MSKRNGALRAFKTLLKDVLNDENGFYKHKNGKVNIAKLSRVSGL
                     SRSFLKKELYIRGLL"
     gene            190..618
                     /locus_tag="SFZ04_001842"
     CDS             190..618
                     /locus_tag="SFZ04_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066070.1"
                     /translation="MSPKQAMLRKQLLAKIHMHKEYLYYKENNAWQDFLALRFEVLSS
                     KDLSIDELKILLDIFDGKIKDDVNFTPDFKGRLMLKKASSNKQFFYLKALLKQTKMPI
                     FSFYKLCKKTLKKDIYSLQTLSKKDCTIMLVVLEKIAKTK"
BASE COUNT          277 a           73 c          100 g          218 t
ORIGIN      
        1 aaggaaagaa aagatgagta aaagaaatgg tgctttaagg gcttttaaaa cacttttaaa
       61 agatgtttta aatgatgaaa atggctttta taaacacaaa aatggcaaag taaatatagc
      121 caagctctct cgtgtaagtg ggcttagtag aagcttttta aaaaaagaac tctatataag
      181 aggtttgcta tgagtcctaa acaagcaatg ctaagaaaac aacttctagc taaaatacac
      241 atgcacaaag agtatttata ttataaagaa aataatgctt ggcaagattt tttagcttta
      301 agatttgagg ttttaagctc aaaagattta agcatagatg agcttaaaat cttgcttgat
      361 atttttgatg gtaagattaa agatgatgtg aattttactc ctgattttaa gggcagatta
      421 atgcttaaaa aagctagttc taataaacaa tttttttatt taaaagcttt attaaaacaa
      481 acaaaaatgc ctatttttag tttttacaaa ctttgtaaaa aaactttaaa aaaagatata
      541 tactcacttc aaactcttag caaaaaagac tgcactataa tgcttgtggt tttagaaaag
      601 attgctaaaa ctaaataaaa taattaaaaa tagatataat cctttaaaag cttttttaaa
      661 ggatttat
//
LOCUS       DARGBD010000191          663 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.191, whole genome shotgun sequence.
ACCESSION   DARGBD010000191 DARGBD010000000
VERSION     DARGBD010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.191"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..502
                     /locus_tag="SFZ04_001843"
     CDS             <1..502
                     /locus_tag="SFZ04_001843"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEG8066071.1"
                     /translation="NILIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRL
                     PFIKKRFGVLEPIDSFFKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHI
                     IFVQSIDALSQNNLTQKHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIF
                     SCKKNQ"
     gene            423..>663
                     /locus_tag="SFZ04_001844"
     CDS             423..>663
                     /locus_tag="SFZ04_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEG8066072.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKD"
BASE COUNT          284 a           81 c           90 g          208 t
ORIGIN      
        1 aaatatttta atttttattc ctttgcatta tgaaccaaac ttaataaaat ttcgccatat
       61 tcttaataaa aattacaaac tttttgttcc atttatgcaa gataaaagtt taaaaattgt
      121 aaaattaaga ttgcctttta ttaaaaaaag gtttggggtt ttagagccta tagattcttt
      181 ttttaaagca aaaattgatt tagctattgt gcctgtaatt ggcgtcgata aaaatttaaa
      241 aagaatagga catgggcaag gtttttatga tagatttttt gaaaatttaa attacaaacc
      301 tcatataata tttgtccaaa gtatagatgc tttaagtcaa aataatctaa cacaaaagca
      361 tgatatttca ggaaaattat acataaaccc ttataaaaaa tattacaaga aagaaagaaa
      421 aaatgataga atcacttatc gcacttatag ccgctatagt cggactcggt ataggatatt
      481 tagttgcaaa aaaaatcaat gatgccaaat atgaaatttt cgtagaacaa gccaaagcta
      541 aagccaaagc tatagaatac gaagcggagc ttattttaaa agatgcaaaa aattcaattc
      601 ttaatgcaga attagaagtt aaaaaaaaat acgaagaaaa aactcacaaa attcaaaaag
      661 att
//
LOCUS       DARGBD010000192          654 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.192, whole genome shotgun sequence.
ACCESSION   DARGBD010000192 DARGBD010000000
VERSION     DARGBD010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.192"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>654
                     /locus_tag="SFZ04_001845"
     CDS             <1..>654
                     /locus_tag="SFZ04_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG8066073.1"
                     /translation="KKIKSQVIDKLDFKEFENIKSQINETSCNPSKIISQKNANIKNN
                     SFVDLTQWAIRSVDLEKIEFTSLIDDFLDKGSISFLTSEANKGKTFLSFAICKHLLEF
                     NKIRKIIYFDGDNSKITIKSRIKKSMQIGGYYFLDYPAFNYIQTSNALECGTDEIEVD
                     FNFIVEKYLEPLMQSGGLVNVFIVFDSLFNFFNGDMNDNKKVAEFMKIIKKISHKGE"
BASE COUNT          274 a           54 c          103 g          223 t
ORIGIN      
        1 taaaaaaaat aaaaagccaa gttatagata aacttgactt taaagaattt gaaaatatta
       61 aaagtcaaat aaatgaaaca agttgcaacc ctagtaaaat tatatcacaa aaaaatgcaa
      121 atataaaaaa taattctttt gtagatttaa cacaatgggc tataagaagc gttgatttag
      181 aaaaaataga atttacatct ttaatcgatg attttttgga taaaggaagt attagttttt
      241 taacaagtga agctaataag ggtaaaactt ttttaagttt tgctatttgc aagcatttat
      301 tagaatttaa caagattaga aaaattattt attttgatgg tgataatagc aaaataacca
      361 ttaaaagcag gattaaaaaa agtatgcaaa tagggggata ttatttttta gattatcctg
      421 cttttaatta tatacaaaca agcaatgctt tagagtgtgg aactgatgag atagaagttg
      481 attttaactt tattgttgaa aaatatctag aacctttaat gcaaagcggt ggtttggtta
      541 atgtttttat cgtatttgat agccttttta acttttttaa tggtgatatg aatgataata
      601 aaaaagtagc tgaatttatg aaaataatta aaaaaataag tcataaaggc gaag
//
LOCUS       DARGBD010000193          625 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.193, whole genome shotgun sequence.
ACCESSION   DARGBD010000193 DARGBD010000000
VERSION     DARGBD010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.193"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(1..557)
                     /locus_tag="SFZ04_001846"
                     /pseudo
     CDS             complement(1..557)
                     /locus_tag="SFZ04_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
BASE COUNT          183 a          123 c          105 g          214 t
ORIGIN      
        1 ttatctatgg ctttccataa aagtctagtt aggcttaaag agtttgattt tcctaccaaa
       61 gtagctactc ccataccgct aaagacatca acgacactta agatatgagg gcggaaaggc
      121 tccaaggttt catcatctct tactataaca tcagctgggg aactatcgat ttgccaacac
      181 atgtttttca tgtcatatag ctctctttga tttccttgtg cagggagaaa cttagatttt
      241 gcacgatcta agccttgagt gataatacaa tgttctaatg gtttatcttt atagtagttt
      301 ttaatgaaat tttgtaaggt ttttacacta aagagtggct ttacttttcc caaatcaaaa
      361 cctataaagt cataattttc tttaatggct gcttccttgt gaatttgcca ccaaagctca
      421 gtgaaattaa atccacctgc tccaaaggtg cgatactctc ttaaggcata ttcttgcatc
      481 caagcactaa gtttagtttt atctttgcgg tgaagtccgc gagtgtcgac taagcctaga
      541 atgccatact ttttatagtc tgaacgccag ttagaataat ttctccattc tacattacat
      601 aaaaacaatg ctcttttgag tgtaa
//
LOCUS       DARGBD010000194          622 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.194, whole genome shotgun sequence.
ACCESSION   DARGBD010000194 DARGBD010000000
VERSION     DARGBD010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.194"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            4..489
                     /locus_tag="SFZ04_001847"
     CDS             4..489
                     /locus_tag="SFZ04_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HEG8066074.1"
                     /translation="MQINNLEDVNLALKKVAELSVKIEKINGEVTLACNEIKEARAGE
                     IKVLSDELKYIEQCITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKLEN
                     LIKALKSYGLNDCITYKEELNKDAIAELEDSTLVKLGLKRVVKDNFRIEPKIESLEIE
                     K"
BASE COUNT          261 a           70 c          116 g          175 t
ORIGIN      
        1 tagatgcaaa taaataattt agaagatgtt aacttagcac ttaaaaaagt ggcagaactt
       61 agcgtaaaaa tagaaaagat taatggcgag gtgactttag cttgtaatga gattaaagaa
      121 gctcgtgcag gagagattaa ggttttaagt gatgaactta aatatataga gcagtgcatt
      181 acaacctttt gtgaaaataa taaacacgag tttgcagaaa aaagaagcaa agaatttacc
      241 tttggcaaga ttggctatcg cttaagtaaa agtgtatctt taccacgtgt gaaagaaaaa
      301 ctagaaaact taatcaaagc tttaaaaagc tatggactta atgattgcat tacttataaa
      361 gaagaactta ataaagatgc tattgcagag cttgaagata gcaccttagt aaagctagga
      421 cttaaaagag ttgtaaaaga taattttaga atagagccaa agattgaaag cttggagatt
      481 gaaaaatgag agagctttcc ttagcgactt ttaaactttt aaatagtgtt tttaaaacaa
      541 aaacagctca ttttaatggc tttttagaac ttgattttaa aaataagcct aagctaaaaa
      601 agcaaagctt taaaagaaaa aa
//
LOCUS       DARGBD010000195          613 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.195, whole genome shotgun sequence.
ACCESSION   DARGBD010000195 DARGBD010000000
VERSION     DARGBD010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.195"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            192..>613
                     /locus_tag="SFZ04_001848"
     CDS             192..>613
                     /locus_tag="SFZ04_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HEG8066075.1"
                     /translation="MQMQEVIEKLKDILASEGKCNLKTKDIAKELGIHPDTFNSMKFR
                     NSIPYPQILNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDSSDLIIDEKVLNFFGSKECEFITCYGESMEPIIKDGS"
BASE COUNT          246 a           68 c           83 g          216 t
ORIGIN      
        1 caattttaaa attaccttgc aaagttaaag ctttattctt tgactttaat ttctaataca
       61 aaattaagta tatttttatt tataaattta taattttaac ttaaaaaatt aaccttttaa
      121 aacaaaagtt tttaattgcc ttttgtaatt ttttgttaaa tttctttgaa attaaaatca
      181 aaggatttaa catgcaaatg caagaagtga ttgaaaagtt aaaagatata ttagccagtg
      241 aaggtaagtg taatttaaaa acaaaagata tagccaaaga actaggaatt catcctgata
      301 cttttaattc catgaaattt agaaactcca ttccatatcc acaaatccta aactttttaa
      361 atcaaagaaa tataagcatt aattatttct tctatggaag ttccccaaaa gatcaattag
      421 aatgtgaaaa caagtataaa attttaaagc tttataaaac aaatgcaagt ttaggcggag
      481 gtggtataaa tgatttgatt gatagctctg atttaatcat cgacgaaaag gttttaaact
      541 tttttggaag taaagaatgt gagtttatta cttgttacgg agagagtatg gaaccaataa
      601 taaaagatgg ttc
//
LOCUS       DARGBD010000196          609 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.196, whole genome shotgun sequence.
ACCESSION   DARGBD010000196 DARGBD010000000
VERSION     DARGBD010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.196"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>609
                     /locus_tag="SFZ04_001849"
     CDS             <1..>609
                     /locus_tag="SFZ04_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8066076.1"
                     /translation="IARTLKIEKINRRFYERIRKAYKENGILGLIDTRGLHRKDKTKL
                     STWMQEYALREYRTFAAGGFNFTELWWQIHKEAAIKENYDFIGFDLGKVKPLFSVKTL
                     QNFIKNYYKDKPLEHCIITQGLDKAKSKFLPAQGNQRELYDMKNMCWQIDSSPADIIV
                     RDDETLEPFRPHILSVVDVFSGMGVATLVSKSNSLSLTRLLW"
BASE COUNT          215 a           98 c          116 g          180 t
ORIGIN      
        1 cattgctcgt actttaaaaa tagaaaagat taacagaaga ttttatgaaa gaattcgcaa
       61 agcatataaa gaaaatggca ttctaggtct tatcgacact cgcggacttc accgcaaaga
      121 taaaactaaa cttagcactt ggatgcaaga atacgcttta agagaatatc gcacctttgc
      181 agcaggtgga tttaatttca ctgagctttg gtggcaaatt cacaaggaag cagccattaa
      241 agaaaattat gattttatag gttttgattt gggaaaagta aagccactct ttagtgtaaa
      301 aaccttacaa aatttcatta aaaactatta taaagacaag cctttggagc attgtattat
      361 cacacaaggt ttagataaag caaaaagtaa gtttctacct gcacaaggta atcaaagaga
      421 gctttatgac atgaaaaaca tgtgttggca aatcgatagc tctccagctg atattatagt
      481 aagagacgat gaaaccttag agcctttccg ccctcacatc ttaagtgtcg ttgatgtctt
      541 tagtggtatg ggtgtggcta ctttagtaag taaatcaaat tctttaagtt tgacgcgtct
      601 tttatggaa
//
LOCUS       DARGBD010000197          590 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.197, whole genome shotgun sequence.
ACCESSION   DARGBD010000197 DARGBD010000000
VERSION     DARGBD010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.197"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>590
                     /locus_tag="SFZ04_001850"
     CDS             <1..>590
                     /locus_tag="SFZ04_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG8066077.1"
                     /translation="KITPIANKILKELNSIKNDFFKALNKPENLMIKDPNILKQTATA
                     FEKLENTLKNILGNQASKIQDKENILENLLSNKENIKEEKLNHNTKNQDEEKYIKVSK
                     EETLADDAKTNIKQDVKNEENLPKKEVNANLDSSTKTHEENIKENPKFYETKTESKTS
                     INTNTNTNNTQNLNNSQNIQSNNNQTMQNIFKNQEF"
BASE COUNT          308 a           89 c           53 g          140 t
ORIGIN      
        1 aaaaaatcac ccctatagct aataaaattt taaaagaatt aaattccatc aaaaatgatt
       61 ttttcaaagc tcttaataag ccagaaaatt taatgataaa agatccaaac atccttaagc
      121 aaactgctac cgcctttgaa aaacttgaaa atactttaaa aaatatacta ggcaatcaag
      181 cttctaaaat acaagataaa gaaaatattt tagaaaatct tttaagtaac aaagaaaata
      241 tcaaagaaga aaaacttaat cataacacaa aaaaccaaga tgaagaaaaa tatataaaag
      301 tatcaaaaga agaaactctc gcagatgatg ctaaaaccaa tattaagcaa gatgtaaaaa
      361 acgaagaaaa tttacctaaa aaagaagtta atgcaaattt agattctagc acaaaaactc
      421 acgaagaaaa tatcaaagaa aatccaaaat tttatgaaac aaaaacagaa agcaaaactt
      481 caatcaatac aaatactaac acaaacaaca cgcaaaattt aaataattct caaaatattc
      541 aatctaacaa taaccaaact atgcaaaata tttttaaaaa tcaggaattt
//
LOCUS       DARGBD010000198          560 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.200, whole genome shotgun sequence.
ACCESSION   DARGBD010000198 DARGBD010000000
VERSION     DARGBD010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.200"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..467
                     /locus_tag="SFZ04_001851"
     CDS             <1..467
                     /locus_tag="SFZ04_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8066078.1"
                     /translation="KDLNKPFDFPKFLDKKLAKEKLEKTKKYLQKSMLESKEFIKKTQ
                     TQLQKLRYTLEKNDKNFQTLEKIKNDLLNLFKEFKKLKLFNELCQAIYFHNECEILKF
                     EVLNTNKQKENLIDFLKIQHNWFIQGLGYLDTQNKTIEKSLENWNFDDIAKK"
BASE COUNT          261 a           74 c           57 g          168 t
ORIGIN      
        1 ataaagattt aaataaacct tttgattttc caaaatttct agataaaaaa ctagccaaag
       61 aaaaattaga aaaaacaaaa aaatatctcc aaaaaagcat gttagaatcc aaagaattta
      121 taaaaaaaac ccaaactcag cttcaaaagc ttagatacac tttagaaaaa aatgacaaga
      181 attttcaaac tcttgaaaaa atcaaaaatg atcttttaaa tctttttaaa gaatttaaaa
      241 aactcaagct ttttaatgaa ctttgtcaag ctatttattt tcataacgaa tgtgaaattt
      301 taaaatttga agttttaaac acaaataagc aaaaagaaaa tttaatagac tttttgaaaa
      361 tacaacacaa ttggtttatc caaggtttag gatatcttga tactcaaaac aaaaccatag
      421 aaaaaagttt agaaaattgg aattttgacg atatagctaa aaaataatta ggatttccaa
      481 tgaccttcac ccctacccaa aaagaactct ttaacaaaaa tattgaagct ttaggtaata
      541 ttcttttaaa agaaagttta
//
LOCUS       DARGBD010000199          548 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.201, whole genome shotgun sequence.
ACCESSION   DARGBD010000199 DARGBD010000000
VERSION     DARGBD010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.201"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..213)
                     /locus_tag="SFZ04_001852"
     CDS             complement(<1..213)
                     /locus_tag="SFZ04_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8066079.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDA"
     gene            complement(358..>548)
                     /locus_tag="SFZ04_001853"
     CDS             complement(358..>548)
                     /locus_tag="SFZ04_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8066080.1"
                     /translation="TSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGS
                     YAMAQANSVQQNVLRLLQ"
BASE COUNT          168 a           95 c           98 g          187 t
ORIGIN      
        1 agcatcatta ccattgttta tagcttgacc taaagtagct gcttgtgaac gcaaagaatc
       61 tgctatagcc atccctgaag catcatctgc tgcggagttg attctaagac ctgaactaag
      121 tctgcttaaa gacttatcca gctctctagc attaacaact gaatttgcat gtgcgtttaa
      181 tgcaccgatg ttggtgttta tcctaaaacc cattttaaat cctttcaaaa tattgcatcg
      241 aaaagattaa agcaagaagt gttccaagtt ttagtttaat taaaaatttt agagtttaaa
      301 ataaaaaagc ctagtttaaa ctaggcttgg atttgtatat attgcagctt ttgtaaacta
      361 ctgtagtaat cttaaaacat tttgctgaac agaattagcc tgtgccatgg cataagagcc
      421 actttgagct aagatatttg ctttagagta gtttgcactc tcagctgcaa agtctacatc
      481 acggatttgt gattctgctg ctttaacatt tacttgagta acagtgatgt tgtttatcgt
      541 tgatgtaa
//
LOCUS       DARGBD010000200          522 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.202, whole genome shotgun sequence.
ACCESSION   DARGBD010000200 DARGBD010000000
VERSION     DARGBD010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.202"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..467)
                     /locus_tag="SFZ04_001854"
     CDS             complement(<1..467)
                     /locus_tag="SFZ04_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8066081.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDLKAIVFVI
                     GGYGANANIYFLDSYRNYIAKNFDVATINVFYHCFCQRRSDVEKYSAYKYFQEEDIEN
                     IKNLLNQFHFSYGEINNDNALFLANSLVKHVENLKMQNKLDHNFKLNFTSTFIP"
BASE COUNT          190 a           77 c           51 g          204 t
ORIGIN      
        1 gggataaaag ttgaagtaaa atttagttta aagttatgat cgagtttatt ttgcattttt
       61 aaattttcta catgtttcac taaagaattc gctaaaaaaa gcgcattatc attatttatt
      121 tcaccataag aaaaatgaaa ctgatttaat aaatttttaa tattttcaat atcttcctct
      181 tgaaaatatt tgtatgcact atatttctca acatctgaac gcctttggca aaaacaatga
      241 taaaaaacat ttattgtcgc tacatcaaaa tttttagcaa tataatttct ataagaatct
      301 aaaaaatata tatttgcatt agctccataa cctcctatga caaaaactat agctttgaga
      361 tctttttcat catcataact tatgcgatat tcaagcttac tggttctttt aatacctagt
      421 tctacatcat cacaagaatc aatttcaaag gtttggttta taagcatata ttttcctttt
      481 taattaataa tcaattttaa ctgattttct acatctttaa aa
//
LOCUS       DARGBD010000201          518 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.203, whole genome shotgun sequence.
ACCESSION   DARGBD010000201 DARGBD010000000
VERSION     DARGBD010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.203"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>518
                     /locus_tag="SFZ04_001855"
     CDS             <1..>518
                     /locus_tag="SFZ04_001855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066082.1"
                     /translation="SPKNDLQINEKILNLKKNMFYKEYCFRVHKDITISLSRKNQNYK
                     IIASHSWTDNGKKNPFKFYSSLIFFNNADNFIETCATPSYNAFAAIYDDFVIGDNSKI
                     YLGNNRNINYYDLVNLMLYKDEGKIQVAVDDIKETVIKQEYNFSHLFPDVVFIKEILE
                     EYLNSTSNISIQ"
BASE COUNT          200 a           54 c           72 g          192 t
ORIGIN      
        1 tctcctaaaa atgatttgca gataaatgaa aaaattttaa atttaaaaaa gaacatgttt
       61 tataaagagt attgctttcg ggttcataaa gatataacaa tttctttatc aagaaaaaac
      121 caaaattata aaattatagc aagtcactct tggactgata atggaaaaaa aaatcctttt
      181 aaattttatt cttctttgat tttttttaat aatgctgata attttattga aacgtgtgca
      241 actccttcat ataatgcatt tgcagcaatt tatgatgatt ttgttatcgg agacaatagt
      301 aaaatttatt taggaaataa tcgcaatatc aattattacg acttggttaa cttaatgctt
      361 tataaagatg agggaaaaat acaagtagct gtagatgata ttaaggaaac agtaattaag
      421 caagaatata atttttctca tttatttcca gatgtggttt ttattaagga aattttggag
      481 gaatatttaa attctacatc taatatttcg attcagat
//
LOCUS       DARGBD010000202          511 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.204, whole genome shotgun sequence.
ACCESSION   DARGBD010000202 DARGBD010000000
VERSION     DARGBD010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.204"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..476)
                     /locus_tag="SFZ04_001856"
     CDS             complement(<1..476)
                     /locus_tag="SFZ04_001856"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEG8066083.1"
                     /translation="MSKAYAIYSPKVSAFSRAAMMISGKDILIAYEDIFNVQERFDII
                     QRNLFSLGLNDLQIARSLFYQYTLSLKLKMPLNICLEILKKALYFDRDNDAYRIYIID
                     NLFQTYQHELINRYLKIILNNRYDCFLKTLCDNSLNVFCDYYKKYLNQSKNNFFYI"
BASE COUNT          212 a           62 c           50 g          187 t
ORIGIN      
        1 tttatataaa aaaaattatt tttagattga tttaaatatt ttttataata atcacagaaa
       61 acattcaaag aattatcaca taaagttttt aaaaaacaat catatctatt atttaaaatt
      121 atttttaaat aacgatttat aagttcatgt tgataagttt gaaataagtt atctattata
      181 tagatcctat aagcatcatt atctctatca aaataaagtg cttttttcaa aatttccaag
      241 catatattta aaggcatttt caattttaaa gataaagtat attgataaaa gagagatcta
      301 gctatttgca aatcatttaa tcccaaagaa aataaattcc tttgaattat atcaaatcgt
      361 tcttgtacgt taaatatatc ttcatacgca atcaatatat ctttcccaga aatcatcata
      421 gcagctctag aaaaggctga tactttagga gaataaatag cataagcttt agacattaaa
      481 tttatctcaa aaaaaactct ttgaagtgaa g
//
LOCUS       DARGBD010000203          469 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.205, whole genome shotgun sequence.
ACCESSION   DARGBD010000203 DARGBD010000000
VERSION     DARGBD010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.205"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            57..443
                     /locus_tag="SFZ04_001857"
     CDS             57..443
                     /locus_tag="SFZ04_001857"
                     /inference="COORDINATES: protein motif:HMM:NF019388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066084.1"
                     /translation="MPLDTPLNTKNFKLKDKLGLNIKEQIEICNKYGITHKLYVKRKE
                     KGWSLKEILETPKGDKRFKYIIIDDIRRNKQAVSLNSHSKFGRNVLHLGNMSKKANLH
                     FKYSKLDHLALQNNLYQDKNGVIKAY"
BASE COUNT          215 a           48 c           74 g          132 t
ORIGIN      
        1 agaaagggaa aaatgcagtt aagttattat tgttttaaag atagaaaaaa agaaaaatgc
       61 ctttagatac accattaaat actaaaaatt ttaaacttaa agataagctt ggtttaaaca
      121 taaaagaaca aatagaaatt tgtaataaat atgggattac ccacaagctt tatgtgaaaa
      181 gaaaagaaaa aggttggagc ttaaaagaaa ttttagaaac tccaaaagga gacaagcgtt
      241 ttaaatatat tattatcgat gatatcagaa gaaacaaaca agcagttagc ctaaacagtc
      301 atagtaaatt tggtagaaat gttttacatt taggaaatat gagcaaaaaa gctaacttgc
      361 attttaaata ttcaaaactt gatcatctag ccttgcaaaa taatttatat caagataaaa
      421 atggagtaat taaggcgtat tagaaaattt aacaaatcta ctaaggtgg
//
LOCUS       DARGBD010000204          448 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.206, whole genome shotgun sequence.
ACCESSION   DARGBD010000204 DARGBD010000000
VERSION     DARGBD010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.206"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>448
                     /locus_tag="SFZ04_001858"
     CDS             <1..>448
                     /locus_tag="SFZ04_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG8066085.1"
                     /translation="GARINFTEELSFKECCEKLLTKEKPQFELPKSLTKNRSDKLLVK
                     FKEKIQKDQDNAKRFLDDALALKQILENILSKDFILPLEFLEKVYQNIENFNHSLDED
                     EFIQDEVLRGAFAYRGKMIADVLKLHIKDETHFITAYIKAYDEWLIY"
BASE COUNT          186 a           52 c           65 g          145 t
ORIGIN      
        1 ggagcaagga ttaatttcac tgaagaactt tcctttaaag aatgttgtga aaaactcctt
       61 acaaaagaaa aacctcaatt tgaacttcca aaaagtttaa ctaaaaatag aagtgataaa
      121 ctcctagtta aattcaaaga aaaaatacaa aaagatcaag ataatgctaa aagattttta
      181 gacgatgctt tagctttaaa acaaatttta gaaaatatac tcagtaaaga ttttatttta
      241 cctttagaat ttttagaaaa agtctatcaa aatatagaaa attttaatca ctctttagat
      301 gaagatgagt ttatacagga tgaagtttta agaggagctt ttgcttatcg tggaaaaatg
      361 attgctgatg tattgaaact tcatataaaa gatgaaacac attttatcac agcctatatc
      421 aaagcttatg atgaatggtt gatttatt
//
LOCUS       DARGBD010000205          444 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.207, whole genome shotgun sequence.
ACCESSION   DARGBD010000205 DARGBD010000000
VERSION     DARGBD010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.207"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>444)
                     /locus_tag="SFZ04_001859"
     CDS             complement(<1..>444)
                     /locus_tag="SFZ04_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HEG8066086.1"
                     /translation="AKQDKIPIFIQNVILYELFWQVQELVNHPEKLSFIDQAKIHKYL
                     DLLDQICYFIDSENIIKFNFNSFLFLHKMGFLHCFKKEKVLIDKVFIEQIDDKNDEIL
                     IKFYTADVNDEIKMLFDDRLAKIICSKIRQYDFLNRVFIYERRIW"
BASE COUNT          168 a           63 c           44 g          169 t
ORIGIN      
        1 gccaaattct tctttcatag ataaaaactc ggtttaaaaa atcatactgt ctgatttttg
       61 aacaaatgat tttggctaat ctatcgtcaa aaagcatttt aatttcatcg ttaacatctg
      121 ccgtataaaa tttaattaaa atttcatcat ttttatcatc tatttgctcg ataaaaactt
      181 tgtctataag cactttttct tttttaaaac aatgcaaaaa tcccattttg tgtaaaaaca
      241 aaaaagaatt aaaattaaat tttattatat tttcactatc aataaaataa caaatttgat
      301 cgagtaaatc aagatattta tgaattttag cttgatctat aaaagacaat ttttcaggat
      361 gattaaccag ttcttgcacc tgccaaaata gttcatacaa aataacattt tgtatgaaaa
      421 taggaatttt atcttgcttt gcta
//
LOCUS       DARGBD010000206          440 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.208, whole genome shotgun sequence.
ACCESSION   DARGBD010000206 DARGBD010000000
VERSION     DARGBD010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.208"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(28..>440)
                     /locus_tag="SFZ04_001860"
     CDS             complement(28..>440)
                     /locus_tag="SFZ04_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066087.1"
                     /translation="LSKDESFQKFLNEDFLKLYKNNGYLINENLQNLKNTMQDIMIYY
                     KLRYSFSKDVKDMSKNKNLDILNIDEKDGGTLLYKINNQACVGIELTRHDSRMAMKIY
                     GIENLDKECKLFIQSPSFKDLSYTKKDFKWYYLE"
BASE COUNT          149 a           60 c           40 g          191 t
ORIGIN      
        1 tttttattta aaaattaaag catttattta ttctaaataa taccacttaa aatccttttt
       61 tgtataggaa agatctttaa aagaaggtga ttggataaat agtttgcact ctttatccaa
      121 attttctatc ccgtatattt tcatagccat tcttgagtca tgtcttgtaa gttctattcc
      181 aacacaagct tgattgttga ttttgtaaag taaagtgcca ccatcttttt catctatatt
      241 taaaatatcc aaattcttat ttttactcat atcttttaca tctttactaa aagaatatcg
      301 gagtttataa tatatcataa tatcctgcat ggtatttttc aaattttgta aattttcatt
      361 aatcaaatat ccattatttt tataaagttt taaaaaatct tcattaagaa atttttgaaa
      421 actttcatct ttagataatt
//
LOCUS       DARGBD010000207          433 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.209, whole genome shotgun sequence.
ACCESSION   DARGBD010000207 DARGBD010000000
VERSION     DARGBD010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.209"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>433
                     /locus_tag="SFZ04_001861"
     CDS             <1..>433
                     /locus_tag="SFZ04_001861"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066088.1"
                     /translation="AKKRTILIPRIEDINISPDTSCMHPILEDNTLVCLHGGRVKLKA
                     KKAKRIKSDNVPIMLDNEIQGASISGCLNPPILGGPCTKVAMVFAYTYSDHKVNNKHS
                     VLQMGLIGMSIKGYPIFAIPKKNKIKFALAKIQASPLAKIKF"
BASE COUNT          169 a           56 c           69 g          139 t
ORIGIN      
        1 ggctaaaaaa agaacaatcc ttattcctag aatagaagat attaatataa gtcctgatac
       61 ttcttgtatg catcctatct tagaagataa tactttagta tgcttacatg gaggtagagt
      121 taagttaaaa gcaaaaaaag ctaaaagaat aaaatcagac aatgttccta ttatgcttga
      181 taatgaaata caaggagcta gtataagtgg atgtttaaat ccacctatac taggaggacc
      241 ttgtactaaa gtagctatgg tatttgctta tacttattca gatcataaag ttaataataa
      301 acattctgta ttacaaatgg gtttgatagg aatgagtata aaaggttatc ctatatttgc
      361 tatacccaaa aagaataaga ttaaatttgc tttagctaaa atacaagcta gtcctcttgc
      421 taagattaaa ttt
//
LOCUS       DARGBD010000208          427 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.210, whole genome shotgun sequence.
ACCESSION   DARGBD010000208 DARGBD010000000
VERSION     DARGBD010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.210"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>427
                     /locus_tag="SFZ04_001862"
     CDS             <1..>427
                     /locus_tag="SFZ04_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8066089.1"
                     /translation="LFGNSYGGYLANLCAKIAPWSIDFILDNSSFVNLFGNIFRLIGF
                     GKEIDFTRYHGTYDDTLFKNIFLYLSDKTYWNNNKFSKNYFSNARKIIREPLNKEHLI
                     IQSLYPNPKYILYHSIFDERSPFKNKENFVHILKELNFKV"
BASE COUNT          171 a           37 c           51 g          168 t
ORIGIN      
        1 ttttgtttgg aaattcatat ggcggatatt tagcaaattt atgtgcaaaa atagctcctt
       61 ggagtattga ttttatatta gataattctt cttttgttaa tttgtttgga aatattttta
      121 gacttatagg ttttggaaaa gaaatcgatt ttactagata tcatggaaca tatgatgata
      181 ctttatttaa aaatatattt ttatatttaa gtgataaaac ttattggaat aataataaat
      241 tttcaaaaaa ttatttttca aatgctagaa aaatcataag agaaccatta aacaaagaac
      301 atctaataat acaaagctta tacccaaatc caaaatatat tttatatcat agtatttttg
      361 atgaaagatc tccttttaaa aataaggaaa attttgtaca tattttaaaa gaattaaatt
      421 ttaaagt
//
LOCUS       DARGBD010000209          413 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.211, whole genome shotgun sequence.
ACCESSION   DARGBD010000209 DARGBD010000000
VERSION     DARGBD010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.211"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..171
                     /locus_tag="SFZ04_001863"
     CDS             <1..171
                     /locus_tag="SFZ04_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-70"
                     /protein_id="HEG8066090.1"
                     /translation="KELNLSVTRVHQIYTEALRKLKSPKNKDKWMAIFETIDLIKKEK
                     AKKENLIQGEKK"
     gene            168..353
                     /locus_tag="SFZ04_001864"
     CDS             168..353
                     /locus_tag="SFZ04_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066091.1"
                     /translation="MIPMIKGEKADYSASLFEIKGVSIIYKESGVFVDVLKGIYPDYI
                     AKKIIRFHLGKKLNKSA"
BASE COUNT          172 a           43 c           75 g          123 t
ORIGIN      
        1 aaagaactta atcttagcgt gacacgcgtt catcaaatct atactgaagc tcttagaaag
       61 ttaaagagtc ctaaaaataa agacaagtgg atggctatct ttgaaacgat tgacttaatc
      121 aaaaaagaaa aagcaaagaa agaaaactta atacaaggag agaaaaaatg ataccaatga
      181 ttaaaggtga gaaagctgat tatagtgctt cgctttttga gataaagggt gtaagcatta
      241 tttataaaga aagtggagtg tttgtagatg ttttaaaagg aatttatcct gattatattg
      301 caaaaaaaat cattcgtttt catttgggta aaaagcttaa caaaagtgct taaattaaag
      361 cactttgatt aagtttttta aaacttaaat ttattagaaa ggattaacaa tgg
//
LOCUS       DARGBD010000210          408 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.212, whole genome shotgun sequence.
ACCESSION   DARGBD010000210 DARGBD010000000
VERSION     DARGBD010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.212"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>408)
                     /locus_tag="SFZ04_001865"
     CDS             complement(<1..>408)
                     /locus_tag="SFZ04_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8066092.1"
                     /translation="VIDNSGTVLPLLECIIGKDLSRPEFFFSDLNKLVGMFIKTYWTR
                     EDERLSYFFTNENYMIRSLLNSSHLTIQASVNKNIILVSYHSLKDPFNTAKDKQTLFL
                     AYKELGYDATLHLIKDESEIDGRFIKDLNHGMRI"
BASE COUNT          149 a           66 c           41 g          152 t
ORIGIN      
        1 aatcctcata ccatgattta aatcttttat aaatcttcca tcaatctcac tttcgtcttt
       61 tattaaatgt aaagtggcgt catatcctag ctctttatac gctaaaaaaa gagtttgttt
      121 atcttttgct gtattaaatg gatcttttaa actatgataa gatactaaaa taatattttt
      181 attgacacta gcttgtatag ttaaatggga agaatttaac aaagaacgaa tcatataatt
      241 ttcattagta aaaaaataag ataatctttc atcttctcta gtccagtacg ttttaataaa
      301 catgcctacc aatttattta aatcactaaa aaaaaattcg ggtctactta aatcttttcc
      361 tattatacat tccaataatg gcaaaacagt tcctgaatta tcaatcac
//
LOCUS       DARGBD010000211          395 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.213, whole genome shotgun sequence.
ACCESSION   DARGBD010000211 DARGBD010000000
VERSION     DARGBD010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.213"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..174
                     /locus_tag="SFZ04_001866"
     CDS             <1..174
                     /locus_tag="SFZ04_001866"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066093.1"
                     /translation="GINLKKFAQKHNLHYMSLFRVVNGLYSEKYKAKTNTKAVYEKLF
                     ELKIIDEMPRACS"
     gene            171..>395
                     /locus_tag="SFZ04_001867"
     CDS             171..>395
                     /locus_tag="SFZ04_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8066094.1"
                     /translation="MSYFLETKEAAQTFNVSTGALRLAVSRNSNKYEWLKVDNEKGGR
                     GGKKLLFKISKDELLTAFNQELISKNTLIYD"
BASE COUNT          154 a           55 c           69 g          117 t
ORIGIN      
        1 ggtatcaatc ttaaaaaatt tgctcaaaaa cataatcttc actatatgag tttatttcgt
       61 gtagttaatg gactttattc tgaaaaatac aaagcaaaaa ctaacacaaa agctgtttat
      121 gagaagcttt ttgagcttaa aatcattgat gaaatgccta gggcttgttc atgagttact
      181 tcttagaaac caaagaagcc gcacaaactt ttaatgtaag cacaggagct ttgaggcttg
      241 cagtaagtag aaactcaaat aaatatgagt ggttaaaagt ggataacgaa aaaggtggac
      301 gcggtggtaa aaaactacta tttaaaatca gtaaagatga gcttttaacc gcctttaacc
      361 aagaattaat cagtaaaaat actttaattt atgat
//
LOCUS       DARGBD010000212          390 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.214, whole genome shotgun sequence.
ACCESSION   DARGBD010000212 DARGBD010000000
VERSION     DARGBD010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.214"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..174
                     /locus_tag="SFZ04_001868"
     CDS             <1..174
                     /locus_tag="SFZ04_001868"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066095.1"
                     /translation="GINLKKFAQKHNLHYMSLFRVVNGLYSEKYKAKANTKAVFEKLL
                     ELKIIDKLPEVCV"
     gene            171..>390
                     /locus_tag="SFZ04_001869"
     CDS             171..>390
                     /locus_tag="SFZ04_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8066096.1"
                     /translation="MIYFLETKEAAQAFSVSTGALRLAVSRNSNKYEWLKVDNEKGGR
                     GGKKLLFKISKDGLLTAFNKQLISKNTLI"
BASE COUNT          152 a           48 c           70 g          120 t
ORIGIN      
        1 ggtattaatc ttaaaaaatt tgcccaaaaa cataatcttc attatatgag cttatttcgc
       61 gtagtgaatg gactttattc tgaaaaatat aaagcaaaag ctaatactaa agccgtattt
      121 gaaaaactct tagaacttaa aattattgat aaacttcctg aggtttgtgt gtgatttatt
      181 tcttagaaac caaagaagca gcacaagctt ttagtgtaag tacaggagct ttgaggcttg
      241 cagtaagtag aaactcaaat aaatacgagt ggttaaaagt ggataatgaa aaaggcggca
      301 ggggtggtaa aaaactacta tttaaaataa gtaaagatgg gcttttaact gcctttaata
      361 agcaattaat cagtaaaaat actttaattt
//
LOCUS       DARGBD010000213          376 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.215, whole genome shotgun sequence.
ACCESSION   DARGBD010000213 DARGBD010000000
VERSION     DARGBD010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.215"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>376
                     /locus_tag="SFZ04_001870"
     CDS             <1..>376
                     /locus_tag="SFZ04_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEG8066097.1"
                     /translation="LIIILIISFGTYAISSYFISKNNKEFEKSQNTLRSLQLLLKDQD
                     YQNLNIKQKADFLIELRNILNTYPELWQDNNIFQYLNLNLSYKGFKEAKQLYYKLNED
                     VLKNTLLKEMEYTLLTDTNKENL"
BASE COUNT          168 a           42 c           35 g          131 t
ORIGIN      
        1 tttaattata attttaatca taagctttgg aacatatgct atatcttctt attttataag
       61 taaaaataat aaagaatttg aaaaaagcca aaacacctta agatctttac aattgcttct
      121 taaagatcaa gattatcaaa atttaaatat taaacaaaaa gctgacttct taattgaatt
      181 gagaaatatt ttaaatactt atcctgaact ttggcaagat aataatatat ttcaatattt
      241 aaatctaaat ctctcataca aaggatttaa agaagctaaa caactttatt ataaactgaa
      301 tgaagatgtg ttaaaaaata ctttattaaa agaaatggaa tatactttac ttaccgatac
      361 aaataaagaa aattta
//
LOCUS       DARGBD010000214          374 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.216, whole genome shotgun sequence.
ACCESSION   DARGBD010000214 DARGBD010000000
VERSION     DARGBD010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.216"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>374
                     /locus_tag="SFZ04_001871"
     CDS             <1..>374
                     /locus_tag="SFZ04_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HEG8066098.1"
                     /translation="SNGAASPIKVQSDTPIGIAGAIKGASKEMIYTKAGYESVDSFPI
                     FAFSNVSKAKEFVNDLIKENNLQDFRLLDTLECINLQNVSNVIIISFFEESEESENTL
                     THIVNAIEAFKKAKHKTGFSPD"
BASE COUNT          142 a           52 c           68 g          112 t
ORIGIN      
        1 agcaatggtg cagcaagtcc tattaaagtg caaagtgata cgcctatagg tattgctggg
       61 gctataaaag gtgcaagtaa agaaatgatt tacacaaagg ctggttatga aagcgtggat
      121 agctttccaa tctttgcctt ttcaaatgta agcaaagcaa aagaatttgt aaacgattta
      181 atcaaagaaa ataacttaca agattttaga cttttagata ctttagaatg tatcaattta
      241 caaaatgttt ctaatgtcat aattatcagc ttttttgaag aaagcgagga aagtgaaaac
      301 actttaaccc atattgttaa tgccatagaa gcttttaaaa aagcaaagca taaaacaggt
      361 tttagccctg attt
//
LOCUS       DARGBD010000215          374 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.217, whole genome shotgun sequence.
ACCESSION   DARGBD010000215 DARGBD010000000
VERSION     DARGBD010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.217"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>374
                     /locus_tag="SFZ04_001872"
     CDS             <1..>374
                     /locus_tag="SFZ04_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HEG8066099.1"
                     /translation="SNGAASPIKVQSDTPIGIAGAIKGASKEMIYTKAGYESVEAMPI
                     FAFSNVNKAKEFVNDLIKENNLQDFRLLDTLECINLQNVNNVIIVSFFEESEESENTL
                     THIVNAIGAFKKAKHKTGFSPD"
BASE COUNT          144 a           53 c           70 g          107 t
ORIGIN      
        1 agcaatggtg cggcaagtcc tattaaagtg caaagtgata cgcctattgg tattgctggg
       61 gctataaaag gtgcaagtaa agaaatgatt tacacaaagg ctggttatga aagcgtggaa
      121 gctatgccaa tctttgcctt ttcaaatgta aataaagcaa aagaatttgt aaacgattta
      181 atcaaagaaa ataacttaca agattttaga cttttagata ctttagaatg tatcaattta
      241 caaaatgtaa acaatgttat aatcgtcagc ttttttgaag aaagcgagga aagtgaaaac
      301 actttaaccc atattgttaa tgccatagga gcctttaaaa aagccaaaca taaaacaggc
      361 tttagtcctg atat
//
LOCUS       DARGBD010000216          364 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.219, whole genome shotgun sequence.
ACCESSION   DARGBD010000216 DARGBD010000000
VERSION     DARGBD010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.219"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>364
                     /locus_tag="SFZ04_001873"
     CDS             <1..>364
                     /locus_tag="SFZ04_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HEG8066100.1"
                     /translation="LLTFSEACEFLEAEVIKWNMSKVRRKKGVKTPLELWNSCDRAIV
                     KISYEEFLFNAGNKELRVVGKKGINFESRVYKSALMPSVGTKIKCVQNIDNIKELFIY
                     DLSGNFLCLALDESIAKL"
BASE COUNT          125 a           47 c           76 g          116 t
ORIGIN      
        1 tacttcttac ctttagcgaa gcttgtgagt ttttagaagc tgaagtgatc aagtggaaca
       61 tgagtaaagt tcgccgcaaa aaaggcgtta aaactccact tgagctttgg aactcgtgcg
      121 atagagctat tgtaaaaata tcttatgaag aatttttgtt taatgctgga aataaagaac
      181 ttagggtcgt gggcaaaaaa ggcattaact ttgaaagtag agtttataaa agtgctttaa
      241 tgccaagtgt tggcacaaaa attaaatgtg tgcaaaatat cgataatatt aaagaacttt
      301 tcatttatga tttaagcgga aactttcttt gtctagctct tgatgaaagt atagctaagc
      361 ttag
//
LOCUS       DARGBD010000217          363 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.220, whole genome shotgun sequence.
ACCESSION   DARGBD010000217 DARGBD010000000
VERSION     DARGBD010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.220"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(109..184)
                     /locus_tag="SFZ04_001874"
     tRNA            complement(109..184)
                     /locus_tag="SFZ04_001874"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(149..151),aa:Val,seq:tac)
     gene            complement(191..266)
                     /locus_tag="SFZ04_001875"
     tRNA            complement(191..266)
                     /locus_tag="SFZ04_001875"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(231..233),aa:Arg,seq:tct)
     gene            complement(286..361)
                     /locus_tag="SFZ04_001876"
     tRNA            complement(286..361)
                     /locus_tag="SFZ04_001876"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(326..328),aa:Lys,seq:ttt)
BASE COUNT          108 a           91 c           83 g           81 t
ORIGIN      
        1 gaacccgcga cctccgccgt gacagggcgg cattctaacc agctgaacta ccgctgcatc
       61 caaagtaaag aagtagagat tataaaacct atttatgatt ttataaaatg gtggtcacta
      121 taagactcga acttatgaca tccaccttgt aagggtggcg ctctaccaac tgagctaagc
      181 gacctatgat tggcgacccc tagaggattt gaacctctgt ttccacacag agagagtgtt
      241 gtcctgggcc actagacgaa agggtcataa ccctaacaat aaaaatggtg tcccgtgttg
      301 gattcgaacc aacggccccc tccttaaaag ggagatgctc taccggctga gctaacgaga
      361 caa
//
LOCUS       DARGBD010000218          353 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.221, whole genome shotgun sequence.
ACCESSION   DARGBD010000218 DARGBD010000000
VERSION     DARGBD010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.221"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>353
                     /locus_tag="SFZ04_001877"
     CDS             <1..>353
                     /locus_tag="SFZ04_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8066101.1"
                     /translation="FVLIDMKHIKEANEKYILIKKAKESNIICRNALIYYYILNADNP
                     NSQIIKYLVNRGAKFEVHDEGAYGWTPMHFWARRNNYQLLELAIKGGANVDMQTLLDP
                     KSEYNETLLFEAVEEA"
BASE COUNT          134 a           52 c           60 g          107 t
ORIGIN      
        1 tttgttctta ttgacatgaa acacatcaaa gaagctaatg aaaaatatat tttaataaaa
       61 aaagcaaaag aaagcaacat tatttgtcga aacgctctaa tctattatta tatactcaat
      121 gctgataatc caaattctca aatcattaag tatctagtca atcgtggagc taaatttgaa
      181 gtgcatgatg aaggggctta tggttggact cctatgcatt tttgggctag acgcaataat
      241 tatcaattat tagaactagc tattaaagga ggagctaatg tagatatgca aaccttgctt
      301 gatccaaaaa gcgaatacaa tgaaaccctt ttatttgaag ctgtagaaga agc
//
LOCUS       DARGBD010000219          350 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.222, whole genome shotgun sequence.
ACCESSION   DARGBD010000219 DARGBD010000000
VERSION     DARGBD010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.222"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>350)
                     /locus_tag="SFZ04_001878"
     CDS             complement(<1..>350)
                     /locus_tag="SFZ04_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG8066102.1"
                     /translation="FAFHDMKHIKEANDKYILMKEVEDDPCIYQNALIYDYILSADNP
                     NSQIIKYLVNRGAKFEVHDEDTNWTPMHFWARRNNYELLELAIKGGANVDMQTFSKLR
                     KCNNETLLFEAVSEP"
BASE COUNT          111 a           59 c           47 g          133 t
ORIGIN      
        1 ggttcgctta cagcttcaaa taaaagggtt tcattgttgc attttcttaa tttactaaaa
       61 gtttgcatat ctacattagc tcctccttta atagctagtt ctaataattc ataattattg
      121 cgtctagccc aaaaatgcat aggggtccaa tttgtatctt catcatgcac ttcaaattta
      181 gccccacgat tgactagata cttaatgatt tgagaatttg gattatcagc acttaatata
      241 taatcataga ttagagcgtt ttgataaata caaggatcat cttctacttc tttcattaaa
      301 atatatttat cattagcttc tttgatgtgt ttcatatcat gaaaagcaaa
//
LOCUS       DARGBD010000220          348 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.223, whole genome shotgun sequence.
ACCESSION   DARGBD010000220 DARGBD010000000
VERSION     DARGBD010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.223"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>348
                     /locus_tag="SFZ04_001879"
     CDS             <1..>348
                     /locus_tag="SFZ04_001879"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066103.1"
                     /translation="SPKNDFKIENKMKEFIVSDLFHNEYCYRITEIDKYLFPTFLIGY
                     KILATHSWTHGKKGLKTWKQYENTLSSIMIRNNQGKFICGTSSHYNSFTCIYDNILID
                     NHTIISLSDVNNHV"
BASE COUNT          136 a           35 c           46 g          131 t
ORIGIN      
        1 tctcctaaaa atgattttaa aatagaaaat aagatgaaag aatttattgt atctgattta
       61 tttcataatg agtattgtta tagaattaca gaaatagata aatatctttt tcctactttt
      121 ttaataggtt ataagatatt ggctactcat tcttggactc atggaaaaaa aggtttaaaa
      181 acatggaaac aatatgaaaa taccttatct agtataatga tacggaataa tcaagggaaa
      241 tttatttgtg gcacatcttc acattataat agttttactt gtatttatga taatatatta
      301 attgataacc atacaataat ttctttgagt gatgtaaata accatgtt
//
LOCUS       DARGBD010000221          346 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.224, whole genome shotgun sequence.
ACCESSION   DARGBD010000221 DARGBD010000000
VERSION     DARGBD010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.224"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>346)
                     /locus_tag="SFZ04_001880"
     CDS             complement(<1..>346)
                     /locus_tag="SFZ04_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG8066104.1"
                     /translation="KAIVFIVGGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCA
                     RQSIDQKYNPKLIPNQDDLERVNGILKNINLGHLSVNKDNFEQIIPLIEQKVNKMKQA
                     GLVDESQKIELSC"
BASE COUNT          127 a           62 c           33 g          124 t
ORIGIN      
        1 cacaagaaag ttctattttt tggctttcat caaccaaacc tgcttgtttc attttattaa
       61 ctttttgctc tataagagga ataatttgtt caaaattatc tttattaacc gataaatgtc
      121 ctaaattaat attttttaaa atgccattta cacgctctaa atcatcttga ttgggaataa
      181 gctttggatt atacttttga tcaatacttt gtcttgcaca aaaacaatga taaaaaacat
      241 gtaccactac aacatcaaaa tttttagcaa tatattccct atcaaaatct aaaaaagaaa
      301 tatttgcatt agctccaaaa ccacccacta taaaaactat ggcttt
//
LOCUS       DARGBD010000222          338 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.225, whole genome shotgun sequence.
ACCESSION   DARGBD010000222 DARGBD010000000
VERSION     DARGBD010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.225"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            65..>338
                     /locus_tag="SFZ04_001881"
     CDS             65..>338
                     /locus_tag="SFZ04_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066105.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDS"
BASE COUNT          129 a           20 c           53 g          136 t
ORIGIN      
        1 ttgcttggta acgattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaatgctt attattggac ataaattatt aaaaaattta gatttttctt ttattgaaag
      121 tgttgaagaa gttaaagata ataaagttta ttgtattgtt tatgatgaaa aattgatttc
      181 ttatttaagt caaaatgatt ttgaatttgc tattttagtt caaaataaag atgagatatt
      241 tttagccaat gctttaggag ctaagttttt gctttgtaat gataaaaaac ttgcaaaatt
      301 tgctagtaag gttgcagaat tttatgtttt tgatagta
//
LOCUS       DARGBD010000223          334 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.226, whole genome shotgun sequence.
ACCESSION   DARGBD010000223 DARGBD010000000
VERSION     DARGBD010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 334)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 334)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.226"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..213)
                     /locus_tag="SFZ04_001882"
     CDS             complement(<1..213)
                     /locus_tag="SFZ04_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8066106.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDA"
BASE COUNT          111 a           63 c           46 g          114 t
ORIGIN      
        1 agcatcgtta ccattagata tagcttgacc taaagtatta gcttgagatc ttaaactatc
       61 tgctatcgcc atccctgaag catcatctgc tgcggagttg attctaagac ctgaactaag
      121 tctgcttaaa gaagcatcca aacttttact atttaaatca gcgtttgctt tagcatttaa
      181 agctgcaaca ttggtgttaa tacgaaatcc cattttaaat ccttttaaaa aatttcaagc
      241 ccatccatga acttgttaaa tgctatatcg tgcaatcaaa aaaatatttt atactttggt
      301 aataaaattt catacttttg acaaagactt gtat
//
LOCUS       DARGBD010000224          331 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.227, whole genome shotgun sequence.
ACCESSION   DARGBD010000224 DARGBD010000000
VERSION     DARGBD010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.227"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            108..290
                     /locus_tag="SFZ04_001883"
     CDS             108..290
                     /locus_tag="SFZ04_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG8066107.1"
                     /translation="MQDTNKDFLTIQEVITLYSLSKDTQNKYRMQKKIPYIKIGKKIF
                     YEKVKLDEWFKNHTIN"
BASE COUNT          152 a           41 c           41 g           97 t
ORIGIN      
        1 aagagccata gtttaagccc ttaaaagaaa ttgtaataaa tttaaactta ctaattcctt
       61 tttaatggct ttattaattg cattaataaa attagaaagg acacaaaatg caagacacaa
      121 acaaagactt tttaactata caagaagtaa ttacacttta cagcttaagc aaagatactc
      181 aaaataaata cagaatgcaa aagaaaatac cttatattaa aataggtaaa aaaatctttt
      241 atgaaaaagt taagcttgat gagtggttta aaaaccatac tatcaattaa ggcggtagtt
      301 atgaataata aacaagcctt agaatattta a
//
LOCUS       DARGBD010000225          322 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.228, whole genome shotgun sequence.
ACCESSION   DARGBD010000225 DARGBD010000000
VERSION     DARGBD010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.228"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>322
                     /locus_tag="SFZ04_001884"
     CDS             <1..>322
                     /locus_tag="SFZ04_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066108.1"
                     /translation="LVYVASPYKALAVRESQRKAQAISVAQQECLKIMRECEGFTPVS
                     PILQFSYLDENKHRDKALQMGLELLKASDYIYMSNHKDAKYSKGMQEELALAKKLGIK
                     ELVLE"
BASE COUNT          120 a           46 c           64 g           92 t
ORIGIN      
        1 attagtttat gtagcctctc cttacaaagc tttagctgta agagaaagtc aaagaaaagc
       61 tcaggctatt agtgtagccc agcaagaatg cttaaaaatt atgcgtgaat gtgaaggctt
      121 tacacctgtt tcacccatac tacaatttag ttatttggat gaaaacaaac acagagacaa
      181 agctttacaa atgggattag agcttttaaa agcaagtgat tatatttata tgagcaatca
      241 taaagatgct aagtattcta agggaatgca agaagaatta gcattagcta aaaagcttgg
      301 cattaaagag ctagttttgg ag
//
LOCUS       DARGBD010000226          319 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.229, whole genome shotgun sequence.
ACCESSION   DARGBD010000226 DARGBD010000000
VERSION     DARGBD010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.229"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>319
                     /locus_tag="SFZ04_001885"
     CDS             <1..>319
                     /locus_tag="SFZ04_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG8066109.1"
                     /translation="NHFKTFSTAKQRIQNQLPYRLGQAMIINSKNFLGYIFLPYILLS
                     IVILYKQEQKNYKHKIKLNPESTLPPLETYPDYNEALKEKRCFTYKLGLALIEANKKW
                     YGGG"
BASE COUNT          135 a           42 c           39 g          103 t
ORIGIN      
        1 aatcatttta aaactttttc aacagctaaa caaaggattc aaaaccaact tccatataga
       61 ttaggccaag caatgataat aaattctaaa aattttttag gttatatatt tttaccgtat
      121 attttattaa gtattgttat actatataaa caagagcaaa aaaattataa acataaaatt
      181 aaattaaacc cagaatcaac cttacctcca ttagaaactt atcctgatta taatgaagct
      241 ttaaaagaaa aaagatgctt cacttataaa ttaggacttg ctttaattga agctaataaa
      301 aaatggtatg ggggggggt
//
LOCUS       DARGBD010000227          318 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.230, whole genome shotgun sequence.
ACCESSION   DARGBD010000227 DARGBD010000000
VERSION     DARGBD010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.230"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>318
                     /locus_tag="SFZ04_001886"
     CDS             <1..>318
                     /locus_tag="SFZ04_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEG8066110.1"
                     /translation="VLALGEFEFKALNFDNLERSLEYNIQSQNRLNNHNALFASSKES
                     EKIKIQGKTLPLKGDRNTYLDKLENMAKEQKSYILTGANGKYYGKFVILALNENRSAF
                     VDGS"
BASE COUNT          133 a           30 c           57 g           98 t
ORIGIN      
        1 gttttagctt taggagaatt tgagtttaaa gctttaaatt ttgataattt agaaagaagc
       61 ttagaataca acatacaaag tcaaaatagg cttaacaatc acaatgcttt atttgcaagt
      121 tctaaagaaa gtgaaaagat taaaatacaa ggcaaaacct tacctttaaa aggagataga
      181 aatacttatt tagataaact tgagaatatg gcaaaagaac aaaaatctta tatcttaaca
      241 ggggctaatg gaaagtatta tggtaagttt gtgattttag ctttaaatga aaatagaagt
      301 gcatttgtag atggaagt
//
LOCUS       DARGBD010000228          288 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.231, whole genome shotgun sequence.
ACCESSION   DARGBD010000228 DARGBD010000000
VERSION     DARGBD010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.231"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>288
                     /locus_tag="SFZ04_001887"
     CDS             <1..>288
                     /locus_tag="SFZ04_001887"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066111.1"
                     /translation="IFSLYCTLREKNKDIVNKADLVILESNIIDMIHGIDLYGKIHLI
                     LRNIFLTYNELSKLNKKFLVLLLPLLEKHSDYNVVETINNAHRMCCNQYGF"
BASE COUNT          119 a           30 c           35 g          104 t
ORIGIN      
        1 aatattttct ttatattgca ccttaagaga aaaaaacaaa gatatagtaa ataaggcaga
       61 tttagttatt ttggaatcaa atattataga tatgatacat ggtatagatc tctatggaaa
      121 aattcactta atactcagaa atattttttt aacatacaat gaattatcta aattaaataa
      181 aaaattttta gttttattgc ttccactttt agaaaaacat agtgattata atgtagttga
      241 aactattaac aatgcccata gaatgtgttg caaccaatat ggatttaa
//
LOCUS       DARGBD010000229          266 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.232, whole genome shotgun sequence.
ACCESSION   DARGBD010000229 DARGBD010000000
VERSION     DARGBD010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..266
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.232"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            60..>266
                     /locus_tag="SFZ04_001888"
     CDS             60..>266
                     /locus_tag="SFZ04_001888"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066112.1"
                     /translation="MRLSSMLIGMYLAEKLGFNFGFVWDNITETQDESILGVNEKFIG
                     INLEKKENIFNFNFIKKYSLDDFNI"
BASE COUNT          103 a           21 c           45 g           97 t
ORIGIN      
        1 ttacattaca acttggagaa aagccttata ttatatctgc aaaaccagat ggatttggaa
       61 tgagattatc gagcatgctt ataggtatgt atttggctga aaaactagga tttaattttg
      121 gttttgtatg ggataatatc actgaaactc aagatgaaag tattcttggt gttaatgaaa
      181 aatttattgg aataaattta gaaaaaaaag agaatatttt taattttaac tttataaaaa
      241 aatatagttt agatgacttt aatatt
//
LOCUS       DARGBD010000230          259 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.233, whole genome shotgun sequence.
ACCESSION   DARGBD010000230 DARGBD010000000
VERSION     DARGBD010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.233"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>259
                     /locus_tag="SFZ04_001889"
     CDS             <1..>259
                     /locus_tag="SFZ04_001889"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066113.1"
                     /translation="WYSAGIEGGLPSNWILNCNEIECLIDLKRIFYNLDFKENLRYII
                     NQVINLVKTFGEDFIALHIRGADIIYGDYYKKWSLQDFVGDK"
BASE COUNT           95 a           16 c           50 g           98 t
ORIGIN      
        1 atggtattca gctggaatag aaggtggatt accttcaaat tggattttaa attgtaatga
       61 gattgaatgc ttgattgatt taaaaagaat attttataat ttagatttta aagagaattt
      121 aagatatatt ataaatcaag taattaattt agttaaaaca tttggtgaag attttatagc
      181 gctacatatt agaggtgctg atatcattta tggagattat tataaaaagt ggtctttgca
      241 agattttgta ggcgataag
//
LOCUS       DARGBD010000231          252 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.234, whole genome shotgun sequence.
ACCESSION   DARGBD010000231 DARGBD010000000
VERSION     DARGBD010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.234"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>252
                     /locus_tag="SFZ04_001890"
     CDS             <1..>252
                     /locus_tag="SFZ04_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HEG8066114.1"
                     /translation="KGDNGKDYLSKDFQSLLDGLNITYDAAIAYAGEQKALVERRFGT
                     LQHAGISKMHGHIGNSLAKREMIEQKTPKKERKAKDEYGF"
BASE COUNT          100 a           33 c           53 g           66 t
ORIGIN      
        1 aaaggggata atggaaaaga ttatctttct aaagattttc aaagcttgct tgatgggctt
       61 aatattacct atgatgcagc tattgcttat gcaggagaac aaaaagcttt agttgaaaga
      121 cgctttggga cacttcaaca tgcaggaatt tctaaaatgc atggacatat tggaaatagc
      181 ttagctaaaa gagaaatgat agagcaaaaa actcctaaga aagaaagaaa agctaaagat
      241 gaatacggct tt
//
LOCUS       DARGBD010000232          252 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.235, whole genome shotgun sequence.
ACCESSION   DARGBD010000232 DARGBD010000000
VERSION     DARGBD010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.235"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>252)
                     /locus_tag="SFZ04_001891"
     CDS             complement(<1..>252)
                     /locus_tag="SFZ04_001891"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066115.1"
                     /translation="WGWYSTDIPPYYWLKDCKKEEFLCIVRDIYNNKFIFSSDYQQIF
                     DNVNVINEKINNFIALHIRGGDIVYSSLRKHAGRKVLEER"
BASE COUNT           97 a           48 c           21 g           86 t
ORIGIN      
        1 tctttcttct aaaactttgc gaccagcatg ctttctcaaa ctagaatata cgatatctcc
       61 acccctgata tgcaaagcaa taaaattatt aattttttca ttaatcacat taacattatc
      121 aaaaatttgc tgataatcag aagaaaaaat aaatttatta ttataaatat ctcgaactat
      181 acatagaaat tcttcttttt tacaatcttt caaccaataa tacggaggaa tatcagttga
      241 ataccatccc ca
//
LOCUS       DARGBD010000233          239 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.236, whole genome shotgun sequence.
ACCESSION   DARGBD010000233 DARGBD010000000
VERSION     DARGBD010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.236"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            complement(<1..>239)
                     /locus_tag="SFZ04_001892"
     CDS             complement(<1..>239)
                     /locus_tag="SFZ04_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HEG8066116.1"
                     /translation="KRLIATWPQVQILNTQGKYAYVPQSPIIAGLIAHTDGDKEYGFS
                     DSYSNRVMNGVTGTEHFIEFINGFDCDADRLRNAH"
BASE COUNT           72 a           48 c           37 g           82 t
ORIGIN      
        1 atatgagcat ttcttaatct atctgcatca caatcaaaac cattgataaa ctctataaaa
       61 tgctctgtgc cagtaacccc attcatcact ctatttgagt aagaatcact aaagccatat
      121 tctttatccc catctgtatg ggctattaaa cctgcgatga taggagattg tggaacataa
      181 gcgtattttc cttgtgtatt taagatttgt acctgtggcc aagtggcaat taatctttt
//
LOCUS       DARGBD010000234          237 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.237, whole genome shotgun sequence.
ACCESSION   DARGBD010000234 DARGBD010000000
VERSION     DARGBD010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.237"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..171
                     /locus_tag="SFZ04_001893"
     CDS             <1..171
                     /locus_tag="SFZ04_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066117.1"
                     /translation="NEKTKVLKTIKSDTNERFRRCLKCGYTFMSIELIKVDNWAKYYI
                     KETQKGLFDEAL"
BASE COUNT          108 a           24 c           38 g           67 t
ORIGIN      
        1 aatgaaaaaa ctaaagtctt aaaaactata aaatcagata ccaatgaaag atttagaaga
       61 tgtcttaagt gcggatacac ttttatgtct attgaactta tcaaagtaga taattgggca
      121 aaatactata taaaagaaac tcaaaaagga ctttttgatg aagcgctttg aattaaaggg
      181 tcttgagaat tttttaaaaa aatgtgaaaa tctagaaaaa gaacaaaagc agattat
//
LOCUS       DARGBD010000235          237 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.238, whole genome shotgun sequence.
ACCESSION   DARGBD010000235 DARGBD010000000
VERSION     DARGBD010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.238"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..171
                     /locus_tag="SFZ04_001894"
     CDS             <1..171
                     /locus_tag="SFZ04_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG8066118.1"
                     /translation="NEKTKVLKTIKSDTNERFRRCIKCGYTFMSIELIKVDNWAKYYI
                     KETQKGLFDETL"
BASE COUNT          110 a           23 c           37 g           67 t
ORIGIN      
        1 aatgaaaaaa ctaaagtttt aaaaactata aaatcagaca ccaatgaaag atttagaaga
       61 tgtattaagt gcggatacac ttttatgtct attgaactta taaaagtaga taattgggca
      121 aaatactata taaaagaaac tcaaaaagga ctttttgatg aaacgctttg aattaaaggg
      181 tcttgaaaat cttttaaaga aatgtgaaaa tttagaaaac gaacaaaagc agattat
//
LOCUS       DARGBD010000236          230 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.239, whole genome shotgun sequence.
ACCESSION   DARGBD010000236 DARGBD010000000
VERSION     DARGBD010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..230
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.239"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
BASE COUNT           94 a           25 c           17 g           94 t
ORIGIN      
        1 tttttttaaa atcatttttg atgtaaggca acagtaaaac taaaaatttt ttatttaatt
       61 tagataattc attatatgtt aaaaaaatat ttctgagtat taaattttta aaatctggta
      121 aatcaataat atgatcaata tccactatat tagattctaa aattattaag tccgccgcaa
      181 taactatact ttcatttcta aatcttaaaa attcatataa tatatgcaat
//
LOCUS       DARGBD010000237          228 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.240, whole genome shotgun sequence.
ACCESSION   DARGBD010000237 DARGBD010000000
VERSION     DARGBD010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..228
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.240"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>228
                     /locus_tag="SFZ04_001895"
     CDS             <1..>228
                     /locus_tag="SFZ04_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG8066119.1"
                     /translation="ERTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQINDSVAQ
                     IDQTTKDNVEIANESAIISSTVSDIANNILED"
BASE COUNT           94 a           31 c           34 g           69 t
ORIGIN      
        1 gaaagaactc aaaagtcttt atcagaaatt gaagctaata ctaatttact tgttcaatct
       61 atcaatgata tggcagaaag tattaaagaa caaactgcag gtatcactca aatcaatgat
      121 agcgtagctc aaattgatca aactactaaa gataatgttg aaattgctaa tgaatcagct
      181 attatttcta gtacagtaag tgatatagct aataatatct tagaagat
//
LOCUS       DARGBD010000238          212 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.242, whole genome shotgun sequence.
ACCESSION   DARGBD010000238 DARGBD010000000
VERSION     DARGBD010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..212
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.242"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            <1..>212
                     /locus_tag="SFZ04_001896"
     CDS             <1..>212
                     /locus_tag="SFZ04_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG8066120.1"
                     /translation="KAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEEL
                     DNIANTTSFNGKQLLSGNFINQEFQI"
BASE COUNT           88 a           37 c           33 g           54 t
ORIGIN      
        1 ataaggctat ggatgagcaa cttaaaatct tagatacaat caaaactaag gcaactcaag
       61 cggctcaaga tggacaaagt ttaaaaacaa gaaccatgct tcaagcagat atcaaccgtt
      121 taatggaaga acttgacaat atcgcaaata ctacttcatt taacggtaag caacttttaa
      181 gtggaaattt tatcaatcaa gaatttcaaa tc
//
LOCUS       DARGBD010000239          210 bp    DNA     linear   BCT 10-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate MattSeq37A_S11
            SAMN11268299-rid18065323.denovo.243, whole genome shotgun sequence.
ACCESSION   DARGBD010000239 DARGBD010000000
VERSION     DARGBD010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11268299
            Sequence Read Archive: SRR8796910
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 19-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001741853.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001741853.1
            Genome Coverage       :: 112x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/19/2023 19:24:08
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,897
            CDSs (total)                      :: 1,856
            Genes (coding)                    :: 1,791
            CDSs (with protein)               :: 1,791
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 52 of 65
            Pseudo Genes (incomplete)         :: 11 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11268299-rid18065323.denovo.243"
                     /isolate="MattSeq37A_S11"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /country="United Kingdom: Swansea"
                     /lat_lon="51.36 N 3.58 W"
                     /collection_date="2015"
                     /collected_by="Lisa K. Williams"
     gene            1..210
                     /locus_tag="SFZ04_001897"
                     /pseudo
     CDS             1..210
                     /locus_tag="SFZ04_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2920 family protein"
BASE COUNT           62 a           25 c           51 g           72 t
ORIGIN      
        1 aaaatttgca gatttaccaa aaatttatgg ggggggggtc ttatggagga tacttagcct
       61 tgctcatagc aaagatagct ccttggtatg tggatggtgt gattgataat tcgggttcgg
      121 ctttgccacc tttaaattat attttaggaa gagaaatgga acatagttac ggtgattatt
      181 atgaagattt tccacataat aggattattt
//
